AlfalfaGEDB | MS.gene64862

M. sativa cultivar XinJiangDaYe / MS.gene64862

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64862.t1	AES95288.1	57.7	182	36	4	1	156	1	167	5.60E-40	174.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64862.t1	G7K021	57.7	182	36	4	1	156	1	167	4.1e-40	174.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene64862.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64862.t1	MTR_5g023880	57.692	182	36	4	1	156	1	167	1.89e-59	183
MS.gene64862.t1	MTR_5g023900	54.286	175	60	2	1	155	1	175	1.08e-57	179
MS.gene64862.t1	MTR_5g023870	68.182	132	25	3	1	128	1	119	3.17e-55	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 66 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAACACTGGACCAG+AGG	0.583233	5.3:+13750763	MS.gene64862:CDS
AAAGAACTCTGAAGGGTAGT+TGG	0.416606	5.3:-13749950	None:intergenic
AACAACACTGGACCAGAGGA+AGG	0.595528	5.3:+13750767	MS.gene64862:CDS
AAGAACTCTGAAGGGTAGTT+GGG	0.429468	5.3:-13749949	None:intergenic
AAGCCAGCCAATAGAGATAG+AGG	0.474391	5.3:+13750694	MS.gene64862:CDS
AAGCTGGCAGCTGATGGCGA+AGG	0.613924	5.3:+13749992	MS.gene64862:CDS
AAGTGATGGTCAAGCTATGA+AGG	0.473835	5.3:+13750018	MS.gene64862:CDS
AATGGGAAGCTGGCAGCTGA+TGG	0.610197	5.3:+13749986	MS.gene64862:CDS
ACAATGTCAAGTCAGGAAGA+GGG	0.642713	5.3:+13750725	MS.gene64862:CDS
ACACTGGACCAGAGGAAGGA+AGG	0.561168	5.3:+13750771	MS.gene64862:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATCTTGGACATGATATAT+AGG	-	chr5.3:13750339-13750358	None:intergenic	30.0%
TATATAGGCAATAAAACCCT+AGG	-	chr5.3:13750324-13750343	None:intergenic	30.0%
AAGTGATGGTCAAGCTATGA+AGG	+	chr5.3:13750018-13750037	MS.gene64862:CDS	40.0%
ACAATGTCAAGTCAGGAAGA+GGG	+	chr5.3:13750725-13750744	MS.gene64862:CDS	40.0%
ACCTCAACCTGATCAATATG+AGG	+	chr5.3:13750201-13750220	MS.gene64862:CDS	40.0%
AGTGATGGTCAAGCTATGAA+GGG	+	chr5.3:13750019-13750038	MS.gene64862:CDS	40.0%
CAAACATGTGTTTCCCACTT+GGG	+	chr5.3:13750072-13750091	MS.gene64862:CDS	40.0%
CCTCAACCTGATCAATATGA+GGG	+	chr5.3:13750202-13750221	MS.gene64862:CDS	40.0%
CTCTGATACAATGTCAAGTC+AGG	+	chr5.3:13750718-13750737	MS.gene64862:CDS	40.0%
TACAATGTCAAGTCAGGAAG+AGG	+	chr5.3:13750724-13750743	MS.gene64862:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	13749854	13750832	13749854	ID=MS.gene64862
chr5.3	mRNA	13749854	13750832	13749854	ID=MS.gene64862.t1;Parent=MS.gene64862
chr5.3	exon	13749854	13750223	13749854	ID=MS.gene64862.t1.exon1;Parent=MS.gene64862.t1
chr5.3	CDS	13749854	13750223	13749854	ID=cds.MS.gene64862.t1;Parent=MS.gene64862.t1
chr5.3	exon	13750684	13750832	13750684	ID=MS.gene64862.t1.exon2;Parent=MS.gene64862.t1
chr5.3	CDS	13750684	13750832	13750684	ID=cds.MS.gene64862.t1;Parent=MS.gene64862.t1

Gene Sequence

>MS.gene64862

ATGCAGAACCCTAACCCTTCCGAGAATTCAACCCCCACCAACAACAAGTCCCCTCATGACCCTCCCTCTGATGATGAATCCCTCAAAGAAACCAACCCAACTACCCTTCAGAGTTCTTTTAGAGCTCGTGAGAATGGGAAGCTGGCAGCTGATGGCGAAGGAGTAAGTGATGGTCAAGCTATGAAGGGGAGGAAGAGTAATATTTGTTGTCATAGATGCAAACATGTGTTTCCCACTTGGGCTACTTTGATGAAGCATTATCAAGAACACTATATTTGTTGTCATCCTCATGGTTATTCAGCACCTCCTGGTTTTTCTCCACTTCCTTCCACATCAACAGCCACCCCACCTCAACCTGATCAATATGAGGGTAAAACTAAAACCTAATTTCCTATCTCAAAACTATTTATTGTCATGTCTTTTTTTTTTTTTTTCACACTATAATTTTTAGGTCAACACTCCAGTGACCTAGGGTTTTATTGCCTATATATCATGTCCAAGATTCAATTATTTAATGTTATATAATTATTATTTTTTTCATTTAATTATTTTGATTTCAAAGTACTTGTGTATAGATCATTCATAAAATACTTGTGTATAGATCATTCATAAAAGATTGCACCATAGACACAAACATATATATGTTCACTTTGAGTGTTGCTTAATTTTATGAGATCTAATTCATGTAGGCATCTATATATATATCTTTAATTTTTTATATAACTTATTGGTTTTTAATTTAACAATTTGTTTTTTTTTTCTTTCAAACTAATGATTTTACAATGAAGCAATTATAATTATAATTTTGAATGTTTTTCTTTTGTTACTAGGTGATGATCAAAGCCAGCCAATAGAGATAGAGGACTCTGATACAATGTCAAGTCAGGAAGAGGGAAGGAACCAAGGCGCAAACAACAACACTGGACCAGAGGAAGGAAGGCCCAAGAGGACGATCAAGAAGCCCAGCCGATACAACTGA

Protein sequence

>MS.gene64862.t1

MQNPNPSENSTPTNNKSPHDPPSDDESLKETNPTTLQSSFRARENGKLAADGEGVSDGQAMKGRKSNICCHRCKHVFPTWATLMKHYQEHYICCHPHGYSAPPGFSPLPSTSTATPPQPDQYEGDDQSQPIEIEDSDTMSSQEEGRNQGANNNTGPEEGRPKRTIKKPSRYN