AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64867

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64867.t1 MTR_5g023910 91.810 232 14 2 1 227 1 232 1.25e-145 407
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64867.t1 AT4G35700 32.086 187 96 8 75 241 98 273 6.53e-18 80.9
MS.gene64867.t1 AT4G35610 54.000 50 23 0 106 155 129 178 1.50e-13 68.9

Find 95 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTTCATCATCCTCTTC+TGG 0.204274 5.3:-13786626 None:intergenic
GTGGCTGGTGTGGTGTTGTT+TGG 0.232681 5.3:-13785242 None:intergenic
GCAAACTCCCTCTTGCATTC+TGG 0.298308 5.3:-13785563 None:intergenic
GCCACTTGGAAAGCTGCGTT+TGG 0.307541 5.3:+13785584 MS.gene64867:CDS
TCTTGCATTCTGGACATGTT+GGG 0.316539 5.3:-13785553 None:intergenic
CAGATGAACCGTCGGCGGTT+AGG 0.343790 5.3:-13785451 None:intergenic
TGGCTGGTGTGGTGTTGTTT+GGG 0.349412 5.3:-13785241 None:intergenic
AGATGAACCGTCGGCGGTTA+GGG 0.352002 5.3:-13785450 None:intergenic
CTCTTGCATTCTGGACATGT+TGG 0.358689 5.3:-13785554 None:intergenic
GTTGTTTGGGCTTGACTCAT+TGG 0.370557 5.3:-13785228 None:intergenic
TACCCTCATCACCACCATTT+GGG 0.382708 5.3:-13785391 None:intergenic
TTCGCAGCCGGTGCAGGTGC+AGG 0.386846 5.3:-13786557 None:intergenic
CTGATGGAGGGTCTTTCACT+TGG 0.398758 5.3:-13785526 None:intergenic
TCTTCATTCGCAGCCGGTGC+AGG 0.409609 5.3:-13786563 None:intergenic
CCACTTGGAAAGCTGCGTTT+GGG 0.412825 5.3:+13785585 MS.gene64867:CDS
CAGAGGACCCTGCGGTTGAT+TGG 0.413835 5.3:-13786493 None:intergenic
TTACCCTCATCACCACCATT+TGG 0.414014 5.3:-13785392 None:intergenic
TTTGGGCTTGACTCATTGGC+AGG 0.414848 5.3:-13785224 None:intergenic
ATCATCATCGTCAGTTAGTT+CGG 0.423637 5.3:-13785360 None:intergenic
AACCCTCGATGAGCACGCTC+TGG 0.432515 5.3:-13785623 None:intergenic
GGGTCCTCTGCAGGTGGTAG+TGG 0.433493 5.3:+13786506 MS.gene64867:CDS
GACCATCAGAACCAACTTGT+TGG 0.435442 5.3:-13785478 None:intergenic
GTGCAGGTGCAGGTGCTGCT+TGG 0.440372 5.3:-13786547 None:intergenic
TCCTCAGTGTTTGTCACAGC+GGG 0.444401 5.3:-13785302 None:intergenic
TCATCATCCTCTTCTGGAGG+TGG 0.459723 5.3:-13786620 None:intergenic
ATGGTCAAGTCTTCAAGAAA+AGG 0.463536 5.3:+13785495 MS.gene64867:CDS
GTTCAGCCAAGGTGCGTTGA+GGG 0.469269 5.3:-13785268 None:intergenic
TTGTTTACAGGTGATGGTCT+TGG 0.469520 5.3:+13786404 MS.gene64867:intron
ATCCAACAAGTTGGTTCTGA+TGG 0.472826 5.3:+13785476 MS.gene64867:CDS
GAAAACACCGGAGGAAGTCC+TGG 0.473695 5.3:+13785337 MS.gene64867:CDS
CAAGGTGCGTTGAGGGGAAG+TGG 0.482830 5.3:-13785261 None:intergenic
TATATACCCTCAGCAGGAAC+GGG 0.491670 5.3:-13785677 None:intergenic
TCAACCGCAGGGTCCTCTGC+AGG 0.492863 5.3:+13786497 MS.gene64867:CDS
CGTCTTTCTTCATTCGCAGC+CGG 0.495573 5.3:-13786569 None:intergenic
GAATGAAGAAAGACGGAGAC+GGG 0.497570 5.3:+13786577 MS.gene64867:CDS
CACTTCCCCTCAACGCACCT+TGG 0.498843 5.3:+13785262 MS.gene64867:CDS
CATGTTGGGGATCCTGATGG+AGG 0.503638 5.3:-13785539 None:intergenic
GGACATGTTGGGGATCCTGA+TGG 0.504468 5.3:-13785542 None:intergenic
CTTGCATTCTGGACATGTTG+GGG 0.506162 5.3:-13785552 None:intergenic
CAAGTGAAAGACCCTCCATC+AGG 0.513855 5.3:+13785527 MS.gene64867:CDS
GTGCGTTGAGGGGAAGTGGC+TGG 0.516360 5.3:-13785257 None:intergenic
CTTGGCGACAAGATCAATGA+AGG 0.517419 5.3:+13786422 MS.gene64867:CDS
AGCAGCACCTGCACCTGCAC+CGG 0.523537 5.3:+13786550 MS.gene64867:CDS
CGTTGCACCCGTTCCTGCTG+AGG 0.526903 5.3:+13785670 MS.gene64867:CDS
GTAATATATATACCCTCAGC+AGG 0.531989 5.3:-13785683 None:intergenic
GATGATGATTTGATCCCAAA+TGG 0.535324 5.3:+13785377 MS.gene64867:CDS
TCATCTGTTATCCAACAAGT+TGG 0.537358 5.3:+13785467 MS.gene64867:CDS
GTTTCATCATCCTCTTCTGG+AGG 0.539642 5.3:-13786623 None:intergenic
ATGTTGGGGATCCTGATGGA+GGG 0.546248 5.3:-13785538 None:intergenic
ATATATACCCTCAGCAGGAA+CGG 0.548442 5.3:-13785678 None:intergenic
AGTTCGGCCAGGACTTCCTC+CGG 0.548973 5.3:-13785344 None:intergenic
ATCCAGAGCGTGCTCATCGA+GGG 0.552627 5.3:+13785621 MS.gene64867:CDS
CATCGTCAGTTAGTTCGGCC+AGG 0.555694 5.3:-13785355 None:intergenic
TTGAGGGGAAGTGGCTGGTG+TGG 0.560312 5.3:-13785252 None:intergenic
ATGAGGGTAACGAAGACGAT+GGG 0.560313 5.3:+13785405 MS.gene64867:CDS
GCAAGAGGGAGTTTGCCACT+TGG 0.560976 5.3:+13785570 MS.gene64867:CDS
AGATCGATCCAATCAACCGC+AGG 0.563542 5.3:+13786485 MS.gene64867:CDS
CGAGTTGCCACCTCCAGAAG+AGG 0.565350 5.3:+13786613 MS.gene64867:CDS
GGTGCAACGGTGCTAAAAGT+TGG 0.571929 5.3:-13785656 None:intergenic
CTCAGCAGGAACGGGTGCAA+CGG 0.574361 5.3:-13785669 None:intergenic
GTTGCACCCGTTCCTGCTGA+GGG 0.581395 5.3:+13785671 MS.gene64867:CDS
CAAGTCTTCAAGAAAAGGAA+AGG 0.585799 5.3:+13785500 MS.gene64867:CDS
TCAGTGTTTGTCACAGCGGG+TGG 0.591498 5.3:-13785299 None:intergenic
GCAACGGTGCTAAAAGTTGG+TGG 0.591524 5.3:-13785653 None:intergenic
ACGGTGCTAAAAGTTGGTGG+AGG 0.599469 5.3:-13785650 None:intergenic
TTCAGCCAAGGTGCGTTGAG+GGG 0.602294 5.3:-13785267 None:intergenic
TTGGGCTTGACTCATTGGCA+GGG 0.602976 5.3:-13785223 None:intergenic
TGTTCAGCCAAGGTGCGTTG+AGG 0.606127 5.3:-13785269 None:intergenic
ATCCCAAATGGTGGTGATGA+GGG 0.607792 5.3:+13785389 MS.gene64867:CDS
TGGTAGTGGTCATATCACTA+AGG 0.608602 5.3:+13786520 MS.gene64867:CDS
CAACATGTCCAGAATGCAAG+AGG 0.611183 5.3:+13785555 MS.gene64867:CDS
TGGCTGATCATGTTCAGCCA+AGG 0.612094 5.3:-13785279 None:intergenic
ACCGCAGGGTCCTCTGCAGG+TGG 0.618162 5.3:+13786500 MS.gene64867:CDS
TGAAACCTCTCTGAAAACAC+CGG 0.622863 5.3:+13785325 MS.gene64867:CDS
TTGGCGACAAGATCAATGAA+GGG 0.623712 5.3:+13786423 MS.gene64867:CDS
GATCCCAAATGGTGGTGATG+AGG 0.627502 5.3:+13785388 MS.gene64867:CDS
ATCCTCAGTGTTTGTCACAG+CGG 0.628423 5.3:-13785303 None:intergenic
CGGCTGCGAATGAAGAAAGA+CGG 0.631768 5.3:+13786570 MS.gene64867:CDS
GTTATCGCCCTAACCGCCGA+CGG 0.632104 5.3:+13785443 MS.gene64867:CDS
CGGTGCTAAAAGTTGGTGGA+GGG 0.635586 5.3:-13785649 None:intergenic
CGAATGAAGAAAGACGGAGA+CGG 0.650910 5.3:+13786576 MS.gene64867:CDS
GATAACAGATGAACCGTCGG+CGG 0.660015 5.3:-13785456 None:intergenic
GATCGATCCAATCAACCGCA+GGG 0.660372 5.3:+13786486 MS.gene64867:CDS
ATGACCACTACCACCTGCAG+AGG 0.660468 5.3:-13786510 None:intergenic
CCCAAACGCAGCTTTCCAAG+TGG 0.661193 5.3:-13785585 None:intergenic
TTGGATAACAGATGAACCGT+CGG 0.663771 5.3:-13785459 None:intergenic
TGGCGACAAGATCAATGAAG+GGG 0.669025 5.3:+13786424 MS.gene64867:CDS
CATCCAGAGCGTGCTCATCG+AGG 0.670033 5.3:+13785620 MS.gene64867:CDS
GATGAGGGTAACGAAGACGA+TGG 0.673127 5.3:+13785404 MS.gene64867:CDS
AACATGTCCAGAATGCAAGA+GGG 0.691308 5.3:+13785556 MS.gene64867:CDS
TGAGGGTAACGAAGACGATG+GGG 0.697277 5.3:+13785406 MS.gene64867:CDS
ACCACCTGCAGAGGACCCTG+CGG 0.702134 5.3:-13786501 None:intergenic
AACCTCTCTGAAAACACCGG+AGG 0.709220 5.3:+13785328 MS.gene64867:CDS
GATGATTTGATCCCAAATGG+TGG 0.741325 5.3:+13785380 MS.gene64867:CDS
ACCCGCTGTGACAAACACTG+AGG 0.799006 5.3:+13785301 MS.gene64867:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAGATCTAAATCA+TGG - chr5.3:13785864-13785883 None:intergenic 15.0%
!! AAATGATTTGAAAAAAACTT+AGG + chr5.3:13786257-13786276 MS.gene64867:intron 15.0%
!! ATAAGACTATATATATAGTT+AGG - chr5.3:13785714-13785733 None:intergenic 15.0%
!! TAAGACTATATATATAGTTA+GGG - chr5.3:13785713-13785732 None:intergenic 15.0%
!! CTAAAACATTCAATTTGAAT+AGG - chr5.3:13786107-13786126 None:intergenic 20.0%
!!! AAAACATCTCAATTATCTTT+TGG - chr5.3:13785895-13785914 None:intergenic 20.0%
!!! AAATCATTTTGTTAAAAGAG+TGG - chr5.3:13786246-13786265 None:intergenic 20.0%
!!! AGATTTTGATGTTTTAGTTA+TGG + chr5.3:13785758-13785777 MS.gene64867:intron 20.0%
!!! GAGAAGTTTTATGAAAAGTA+TGG + chr5.3:13785834-13785853 MS.gene64867:intron 25.0%
ATAAAGCACACACTCATATA+AGG - chr5.3:13786369-13786388 None:intergenic 30.0%
TTACGTCGTTAATTGTTTAC+AGG + chr5.3:13786392-13786411 MS.gene64867:intron 30.0%
! ACATCTCAATTATCTTTTGG+TGG - chr5.3:13785892-13785911 None:intergenic 30.0%
ATCATCATCGTCAGTTAGTT+CGG - chr5.3:13785363-13785382 None:intergenic 35.0%
ATGGTCAAGTCTTCAAGAAA+AGG + chr5.3:13785495-13785514 MS.gene64867:CDS 35.0%
CAAGTCTTCAAGAAAAGGAA+AGG + chr5.3:13785500-13785519 MS.gene64867:CDS 35.0%
CGTTAATTGTTTACAGGTGA+TGG + chr5.3:13786398-13786417 MS.gene64867:intron 35.0%
GATGATGATTTGATCCCAAA+TGG + chr5.3:13785377-13785396 MS.gene64867:CDS 35.0%
GTAATATATATACCCTCAGC+AGG - chr5.3:13785686-13785705 None:intergenic 35.0%
TCATCTGTTATCCAACAAGT+TGG + chr5.3:13785467-13785486 MS.gene64867:CDS 35.0%
AACATGTCCAGAATGCAAGA+GGG + chr5.3:13785556-13785575 MS.gene64867:CDS 40.0%
ATATATACCCTCAGCAGGAA+CGG - chr5.3:13785681-13785700 None:intergenic 40.0%
GATGATTTGATCCCAAATGG+TGG + chr5.3:13785380-13785399 MS.gene64867:CDS 40.0%
TCTGTTTCATCATCCTCTTC+TGG - chr5.3:13786629-13786648 None:intergenic 40.0%
TCTTGCATTCTGGACATGTT+GGG - chr5.3:13785556-13785575 None:intergenic 40.0%
TTGGATAACAGATGAACCGT+CGG - chr5.3:13785462-13785481 None:intergenic 40.0%
TTGGCGACAAGATCAATGAA+GGG + chr5.3:13786423-13786442 MS.gene64867:CDS 40.0%
! TGAAACCTCTCTGAAAACAC+CGG + chr5.3:13785325-13785344 MS.gene64867:CDS 40.0%
! TTGTTTACAGGTGATGGTCT+TGG + chr5.3:13786404-13786423 MS.gene64867:intron 40.0%
!! ATCCAACAAGTTGGTTCTGA+TGG + chr5.3:13785476-13785495 MS.gene64867:CDS 40.0%
!! TGGTAGTGGTCATATCACTA+AGG + chr5.3:13786520-13786539 MS.gene64867:CDS 40.0%
ATCCTCAGTGTTTGTCACAG+CGG - chr5.3:13785306-13785325 None:intergenic 45.0%
ATGAGGGTAACGAAGACGAT+GGG + chr5.3:13785405-13785424 MS.gene64867:CDS 45.0%
CAACATGTCCAGAATGCAAG+AGG + chr5.3:13785555-13785574 MS.gene64867:CDS 45.0%
CGAATGAAGAAAGACGGAGA+CGG + chr5.3:13786576-13786595 MS.gene64867:CDS 45.0%
CTCTTGCATTCTGGACATGT+TGG - chr5.3:13785557-13785576 None:intergenic 45.0%
CTTGCATTCTGGACATGTTG+GGG - chr5.3:13785555-13785574 None:intergenic 45.0%
CTTGGCGACAAGATCAATGA+AGG + chr5.3:13786422-13786441 MS.gene64867:CDS 45.0%
GAATGAAGAAAGACGGAGAC+GGG + chr5.3:13786577-13786596 MS.gene64867:CDS 45.0%
GACCATCAGAACCAACTTGT+TGG - chr5.3:13785481-13785500 None:intergenic 45.0%
GTTGTTTGGGCTTGACTCAT+TGG - chr5.3:13785231-13785250 None:intergenic 45.0%
GTTTCATCATCCTCTTCTGG+AGG - chr5.3:13786626-13786645 None:intergenic 45.0%
TACCCTCATCACCACCATTT+GGG - chr5.3:13785394-13785413 None:intergenic 45.0%
TATATACCCTCAGCAGGAAC+GGG - chr5.3:13785680-13785699 None:intergenic 45.0%
TGGCGACAAGATCAATGAAG+GGG + chr5.3:13786424-13786443 MS.gene64867:CDS 45.0%
TTACCCTCATCACCACCATT+TGG - chr5.3:13785395-13785414 None:intergenic 45.0%
! ATCCCAAATGGTGGTGATGA+GGG + chr5.3:13785389-13785408 MS.gene64867:CDS 45.0%
!! AAAAAATCTAAAAATTATTT+AGG + chr5.3:13785970-13785989 MS.gene64867:intron 5.0%
!! AAAAATCTAAAAATTATTTA+GGG + chr5.3:13785971-13785990 MS.gene64867:intron 5.0%
AGATCGATCCAATCAACCGC+AGG + chr5.3:13786485-13786504 MS.gene64867:CDS 50.0%
ATGTTGGGGATCCTGATGGA+GGG - chr5.3:13785541-13785560 None:intergenic 50.0%
CAAGTGAAAGACCCTCCATC+AGG + chr5.3:13785527-13785546 MS.gene64867:CDS 50.0%
CCACTTGGAAAGCTGCGTTT+GGG + chr5.3:13785585-13785604 MS.gene64867:CDS 50.0%
CGGCTGCGAATGAAGAAAGA+CGG + chr5.3:13786570-13786589 MS.gene64867:CDS 50.0%
CGTCTTTCTTCATTCGCAGC+CGG - chr5.3:13786572-13786591 None:intergenic 50.0%
CTGATGGAGGGTCTTTCACT+TGG - chr5.3:13785529-13785548 None:intergenic 50.0%
GATAACAGATGAACCGTCGG+CGG - chr5.3:13785459-13785478 None:intergenic 50.0%
GATCGATCCAATCAACCGCA+GGG + chr5.3:13786486-13786505 MS.gene64867:CDS 50.0%
GATGAGGGTAACGAAGACGA+TGG + chr5.3:13785404-13785423 MS.gene64867:CDS 50.0%
GCAAACTCCCTCTTGCATTC+TGG - chr5.3:13785566-13785585 None:intergenic 50.0%
TCCTCAGTGTTTGTCACAGC+GGG - chr5.3:13785305-13785324 None:intergenic 50.0%
TGAGGGTAACGAAGACGATG+GGG + chr5.3:13785406-13785425 MS.gene64867:CDS 50.0%
TGGCTGATCATGTTCAGCCA+AGG - chr5.3:13785282-13785301 None:intergenic 50.0%
TTGGGCTTGACTCATTGGCA+GGG - chr5.3:13785226-13785245 None:intergenic 50.0%
TTTGGGCTTGACTCATTGGC+AGG - chr5.3:13785227-13785246 None:intergenic 50.0%
! AACCTCTCTGAAAACACCGG+AGG + chr5.3:13785328-13785347 MS.gene64867:CDS 50.0%
! ACGAAGACGATGGGGCTTTT+AGG + chr5.3:13785414-13785433 MS.gene64867:CDS 50.0%
! GATCCCAAATGGTGGTGATG+AGG + chr5.3:13785388-13785407 MS.gene64867:CDS 50.0%
! GCAACGGTGCTAAAAGTTGG+TGG - chr5.3:13785656-13785675 None:intergenic 50.0%
! GGTGCAACGGTGCTAAAAGT+TGG - chr5.3:13785659-13785678 None:intergenic 50.0%
! TCATCATCCTCTTCTGGAGG+TGG - chr5.3:13786623-13786642 None:intergenic 50.0%
! TTCCTCCGGTGTTTTCAGAG+AGG - chr5.3:13785333-13785352 None:intergenic 50.0%
!! ACGGTGCTAAAAGTTGGTGG+AGG - chr5.3:13785653-13785672 None:intergenic 50.0%
!! CGGTGCTAAAAGTTGGTGGA+GGG - chr5.3:13785652-13785671 None:intergenic 50.0%
!! TGGCTGGTGTGGTGTTGTTT+GGG - chr5.3:13785244-13785263 None:intergenic 50.0%
ACCCGCTGTGACAAACACTG+AGG + chr5.3:13785301-13785320 MS.gene64867:CDS 55.0%
AGATGAACCGTCGGCGGTTA+GGG - chr5.3:13785453-13785472 None:intergenic 55.0%
ATCCAGAGCGTGCTCATCGA+GGG + chr5.3:13785621-13785640 MS.gene64867:CDS 55.0%
ATGACCACTACCACCTGCAG+AGG - chr5.3:13786513-13786532 None:intergenic 55.0%
CATCGTCAGTTAGTTCGGCC+AGG - chr5.3:13785358-13785377 None:intergenic 55.0%
CATGTTGGGGATCCTGATGG+AGG - chr5.3:13785542-13785561 None:intergenic 55.0%
CCCAAACGCAGCTTTCCAAG+TGG - chr5.3:13785588-13785607 None:intergenic 55.0%
GAAAACACCGGAGGAAGTCC+TGG + chr5.3:13785337-13785356 MS.gene64867:CDS 55.0%
GCAAGAGGGAGTTTGCCACT+TGG + chr5.3:13785570-13785589 MS.gene64867:CDS 55.0%
GCCACTTGGAAAGCTGCGTT+TGG + chr5.3:13785584-13785603 MS.gene64867:CDS 55.0%
GGACATGTTGGGGATCCTGA+TGG - chr5.3:13785545-13785564 None:intergenic 55.0%
GTTCAGCCAAGGTGCGTTGA+GGG - chr5.3:13785271-13785290 None:intergenic 55.0%
TCAGTGTTTGTCACAGCGGG+TGG - chr5.3:13785302-13785321 None:intergenic 55.0%
TGTTCAGCCAAGGTGCGTTG+AGG - chr5.3:13785272-13785291 None:intergenic 55.0%
TTCAGCCAAGGTGCGTTGAG+GGG - chr5.3:13785270-13785289 None:intergenic 55.0%
!! GTGGCTGGTGTGGTGTTGTT+TGG - chr5.3:13785245-13785264 None:intergenic 55.0%
!!! CGATGGGGCTTTTAGGACGA+TGG + chr5.3:13785421-13785440 MS.gene64867:CDS 55.0%
AACCCTCGATGAGCACGCTC+TGG - chr5.3:13785626-13785645 None:intergenic 60.0%
AGTTCGGCCAGGACTTCCTC+CGG - chr5.3:13785347-13785366 None:intergenic 60.0%
CAAGGTGCGTTGAGGGGAAG+TGG - chr5.3:13785264-13785283 None:intergenic 60.0%
CACTTCCCCTCAACGCACCT+TGG + chr5.3:13785262-13785281 MS.gene64867:CDS 60.0%
CAGAGGACCCTGCGGTTGAT+TGG - chr5.3:13786496-13786515 None:intergenic 60.0%
CAGATGAACCGTCGGCGGTT+AGG - chr5.3:13785454-13785473 None:intergenic 60.0%
CATCCAGAGCGTGCTCATCG+AGG + chr5.3:13785620-13785639 MS.gene64867:CDS 60.0%
CGAGTTGCCACCTCCAGAAG+AGG + chr5.3:13786613-13786632 MS.gene64867:CDS 60.0%
CTCAGCAGGAACGGGTGCAA+CGG - chr5.3:13785672-13785691 None:intergenic 60.0%
GTTATCGCCCTAACCGCCGA+CGG + chr5.3:13785443-13785462 MS.gene64867:CDS 60.0%
GTTGCACCCGTTCCTGCTGA+GGG + chr5.3:13785671-13785690 MS.gene64867:CDS 60.0%
TCTTCATTCGCAGCCGGTGC+AGG - chr5.3:13786566-13786585 None:intergenic 60.0%
TTGAGGGGAAGTGGCTGGTG+TGG - chr5.3:13785255-13785274 None:intergenic 60.0%
ACCACCTGCAGAGGACCCTG+CGG - chr5.3:13786504-13786523 None:intergenic 65.0%
AGCAGCACCTGCACCTGCAC+CGG + chr5.3:13786550-13786569 MS.gene64867:CDS 65.0%
CGTTGCACCCGTTCCTGCTG+AGG + chr5.3:13785670-13785689 MS.gene64867:CDS 65.0%
GGGTCCTCTGCAGGTGGTAG+TGG + chr5.3:13786506-13786525 MS.gene64867:CDS 65.0%
GTGCGTTGAGGGGAAGTGGC+TGG - chr5.3:13785260-13785279 None:intergenic 65.0%
TCAACCGCAGGGTCCTCTGC+AGG + chr5.3:13786497-13786516 MS.gene64867:CDS 65.0%
!! GTGCAGGTGCAGGTGCTGCT+TGG - chr5.3:13786550-13786569 None:intergenic 65.0%
ACCGCAGGGTCCTCTGCAGG+TGG + chr5.3:13786500-13786519 MS.gene64867:CDS 70.0%
TTCGCAGCCGGTGCAGGTGC+AGG - chr5.3:13786560-13786579 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 13785212 13786658 13785212 ID=MS.gene64867
chr5.3 mRNA 13785212 13786658 13785212 ID=MS.gene64867.t1;Parent=MS.gene64867
chr5.3 exon 13785212 13785692 13785212 ID=MS.gene64867.t1.exon1;Parent=MS.gene64867.t1
chr5.3 CDS 13785212 13785692 13785212 ID=cds.MS.gene64867.t1;Parent=MS.gene64867.t1
chr5.3 exon 13786414 13786658 13786414 ID=MS.gene64867.t1.exon2;Parent=MS.gene64867.t1
chr5.3 CDS 13786414 13786658 13786414 ID=cds.MS.gene64867.t1;Parent=MS.gene64867.t1
Gene Sequence

>MS.gene64867

ATGGAAAACGTCCCTGCCAATGAGTCAAGCCCAAACAACACCACACCAGCCACTTCCCCTCAACGCACCTTGGCTGAACATGATCAGCCACCCGCTGTGACAAACACTGAGGATGAAACCTCTCTGAAAACACCGGAGGAAGTCCTGGCCGAACTAACTGACGATGATGATGATTTGATCCCAAATGGTGGTGATGAGGGTAACGAAGACGATGGGGCTTTTAGGACGATGGTTATCGCCCTAACCGCCGACGGTTCATCTGTTATCCAACAAGTTGGTTCTGATGGTCAAGTCTTCAAGAAAAGGAAAGGCAACCAAGTGAAAGACCCTCCATCAGGATCCCCAACATGTCCAGAATGCAAGAGGGAGTTTGCCACTTGGAAAGCTGCGTTTGGGCATATGCGCAAGCATCCAGAGCGTGCTCATCGAGGGTTTTTCCCTCCACCAACTTTTAGCACCGTTGCACCCGTTCCTGCTGAGGGTATATATATTACTAAACCCTAACTATATATATAGTCTTATAATATAGATCTGAAATTTTGTTTAAGATTTTGATGTTTTAGTTATGGTTATGAGTGAAAGAATATTTAAAAAAAAAAAACATTTTGATATAAATAATTTAGAGAAGTTTTATGAAAAGTATGGTACTCCATGATTTAGATCTATTTTTTTTAGATCCACCAAAAGATAATTGAGATGTTTTAGTTGTTTAAAAAAAATATTTTTGATGTTTTAGCTATGTTTGTGTGTAATTTAAAAAAAAATCTAAAAATTATTTAGGGATTATTTTTCAGAAACATTCAAGAAAAATATATTATGTTGTGTTTGTTTTAAATTGTAAAAAAGATTTTGTAAAAGTGATTTTCTTGAAAAGCTAATGAAAATAGCTTTTCCTATTCAAATTGAATGTTTTAGTGTTTAAGAAAAATATGTTATTTTGTGTTTGTCTAACTAAACTTAAAAAAAGAGATTTTATATTTCTCACTTATTTAAAAGCAAATAGAAATAGCTTTTCATTTTCAACATACAAACCACTCTTTTAACAAAATGATTTGAAAAAAACTTAGGCATGCAAACTTAATTAAATCATAAAGAATAATTTTTTACTAATCTTAAATAAACAAATCAGACTGATTAACAAATCAACTTTTTAACCTTATATGAGTGTGTGCTTTATTTGTTACGTCGTTAATTGTTTACAGGTGATGGTCTTGGCGACAAGATCAATGAAGGGGTGAGCTCATTAGCTCGCGAGCTTGTGTTCGATCTGAATAGATCGATCCAATCAACCGCAGGGTCCTCTGCAGGTGGTAGTGGTCATATCACTAAGGAAATCCAAGCAGCACCTGCACCTGCACCGGCTGCGAATGAAGAAAGACGGAGACGGGACTTTGATCTGAACGAGTTGCCACCTCCAGAAGAGGATGATGAAACAGAAGAGAAATGA
Protein sequence

>MS.gene64867.t1

MENVPANESSPNNTTPATSPQRTLAEHDQPPAVTNTEDETSLKTPEEVLAELTDDDDDLIPNGGDEGNEDDGAFRTMVIALTADGSSVIQQVGSDGQVFKKRKGNQVKDPPSGSPTCPECKREFATWKAAFGHMRKHPERAHRGFFPPPTFSTVAPVPAEGDGLGDKINEGVSSLARELVFDLNRSIQSTAGSSAGGSGHITKEIQAAPAPAPAANEERRRRDFDLNELPPPEEDDETEEK