Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64875.t1 | XP_003612350.1 | 94.9 | 312 | 15 | 1 | 1 | 312 | 20 | 330 | 3.60E-162 | 580.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64875.t1 | O81791 | 49.0 | 314 | 132 | 7 | 1 | 299 | 59 | 359 | 5.4e-66 | 252.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64875.t1 | G7K041 | 94.9 | 312 | 15 | 1 | 1 | 312 | 20 | 330 | 2.6e-162 | 580.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64875.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64875.t1 | MTR_5g024070 | 94.872 | 312 | 15 | 1 | 1 | 312 | 20 | 330 | 0.0 | 603 |
| MS.gene64875.t1 | MTR_3g435550 | 37.037 | 135 | 77 | 2 | 162 | 295 | 38 | 165 | 1.76e-23 | 95.5 |
| MS.gene64875.t1 | MTR_3g091700 | 38.400 | 125 | 59 | 2 | 171 | 295 | 148 | 254 | 8.45e-21 | 90.1 |
| MS.gene64875.t1 | MTR_3g104830 | 48.276 | 87 | 40 | 2 | 180 | 264 | 393 | 476 | 1.88e-13 | 70.9 |
| MS.gene64875.t1 | MTR_3g115400 | 45.122 | 82 | 41 | 2 | 158 | 237 | 570 | 649 | 1.32e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64875.t1 | AT4G35590 | 50.485 | 309 | 125 | 8 | 1 | 294 | 9 | 304 | 1.40e-87 | 265 |
| MS.gene64875.t1 | AT4G35590 | 51.133 | 309 | 123 | 9 | 1 | 294 | 59 | 354 | 9.58e-87 | 265 |
| MS.gene64875.t1 | AT1G74480 | 46.087 | 115 | 57 | 2 | 180 | 292 | 131 | 242 | 7.58e-24 | 99.4 |
| MS.gene64875.t1 | AT1G18790 | 44.628 | 121 | 61 | 3 | 175 | 293 | 120 | 236 | 8.28e-24 | 98.6 |
| MS.gene64875.t1 | AT5G66990 | 42.727 | 110 | 59 | 2 | 187 | 295 | 164 | 270 | 1.87e-21 | 92.4 |
| MS.gene64875.t1 | AT5G53040 | 42.609 | 115 | 53 | 1 | 181 | 295 | 147 | 248 | 3.61e-21 | 90.9 |
| MS.gene64875.t1 | AT5G16100 | 50.000 | 64 | 32 | 0 | 174 | 237 | 346 | 409 | 1.48e-13 | 71.2 |
Find 58 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5.3:-13900253 | MS.gene64875:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5.3:-13900165 | MS.gene64875:CDS |
| AGAAGACGAGGCTGAGTTAC+TGG | 0.328138 | 5.3:-13900596 | MS.gene64875:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5.3:-13900103 | MS.gene64875:intron |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 5.3:+13900213 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5.3:+13900787 | None:intergenic |
| GATTTCAACAATCTAAGAAT+TGG | 0.356192 | 5.3:+13902169 | None:intergenic |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5.3:-13900797 | MS.gene64875:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5.3:-13900698 | MS.gene64875:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5.3:+13902045 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.377748 | 5.3:+13900769 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5.3:-13900143 | MS.gene64875:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5.3:-13902123 | MS.gene64875:CDS |
| TGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5.3:+13899342 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.387896 | 5.3:-13900641 | MS.gene64875:CDS |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5.3:+13900703 | None:intergenic |
| CATAGAGAAGAGGCCCTTCA+TGG | 0.404040 | 5.3:-13899463 | MS.gene64875:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5.3:+13902254 | None:intergenic |
| AAATTGAGACCAAGAGATTC+AGG | 0.445679 | 5.3:-13899434 | MS.gene64875:CDS |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5.3:-13900200 | MS.gene64875:CDS |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5.3:-13899490 | MS.gene64875:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5.3:-13900182 | MS.gene64875:CDS |
| TTGCCTTCTTATAACTGCCA+TGG | 0.468291 | 5.3:+13899512 | None:intergenic |
| TCAGCCTCGTCTTCTTCATA+AGG | 0.476498 | 5.3:+13900604 | None:intergenic |
| AACATCTTGCCTGAATCTCT+TGG | 0.476779 | 5.3:+13899425 | None:intergenic |
| CTCAATTTGTATGTCCATGA+AGG | 0.479972 | 5.3:+13899449 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5.3:-13900152 | MS.gene64875:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.497528 | 5.3:-13899556 | MS.gene64875:intron |
| TATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5.3:-13899502 | MS.gene64875:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 5.3:+13900774 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 5.3:+13900230 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5.3:-13902251 | MS.gene64875:CDS |
| TCATGTGGAGATCATTAAGC+AGG | 0.525296 | 5.3:+13900764 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5.3:+13900269 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5.3:+13902068 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5.3:-13900740 | MS.gene64875:CDS |
| ATCAGATGATGCTAATTGCT+AGG | 0.533299 | 5.3:+13899336 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5.3:-13899550 | MS.gene64875:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 5.3:-13900201 | MS.gene64875:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5.3:+13902067 | None:intergenic |
| CAGCCATGGCAGTTATAAGA+AGG | 0.552518 | 5.3:-13899515 | MS.gene64875:CDS |
| TCTCCACATGATATACAAGT+TGG | 0.555482 | 5.3:-13900752 | MS.gene64875:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5.3:-13899551 | MS.gene64875:CDS |
| GTTCCAACTTGTATATCATG+TGG | 0.569302 | 5.3:+13900749 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.580889 | 5.3:+13900634 | None:intergenic |
| AAAAGGAAAACATAGAGAAG+AGG | 0.595516 | 5.3:-13899473 | MS.gene64875:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5.3:-13899529 | MS.gene64875:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5.3:+13900129 | None:intergenic |
| TCAATTTGTATGTCCATGAA+GGG | 0.616363 | 5.3:+13899450 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5.3:-13899547 | MS.gene64875:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5.3:-13900707 | MS.gene64875:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5.3:-13902262 | MS.gene64875:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5.3:-13900708 | MS.gene64875:CDS |
| TCTTCCTTATGAAGAAGACG+AGG | 0.662936 | 5.3:-13900608 | MS.gene64875:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5.3:+13900262 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5.3:+13900138 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5.3:-13900694 | MS.gene64875:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5.3:-13902259 | MS.gene64875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAATAAATAAAAAAG+TGG | + | chr5.3:13901551-13901570 | None:intergenic | 10.0% |
| !!! | TATACACTTATTTTATTAAT+AGG | - | chr5.3:13901176-13901195 | MS.gene64875:intron | 10.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5.3:13899616-13899635 | None:intergenic | 15.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5.3:13899615-13899634 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5.3:13899643-13899662 | MS.gene64875:intron | 15.0% |
| !! | TTATAGACCAAATAATTTAT+AGG | + | chr5.3:13901957-13901976 | None:intergenic | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | - | chr5.3:13901184-13901203 | MS.gene64875:intron | 15.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5.3:13901368-13901387 | MS.gene64875:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5.3:13900124-13900143 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5.3:13900198-13900217 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5.3:13901732-13901751 | MS.gene64875:intron | 20.0% |
| !! | CTAAATATTAGTTCAATAGT+TGG | + | chr5.3:13901646-13901665 | None:intergenic | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5.3:13899642-13899661 | MS.gene64875:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | + | chr5.3:13901171-13901190 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5.3:13900199-13900218 | None:intergenic | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5.3:13901707-13901726 | None:intergenic | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5.3:13901858-13901877 | None:intergenic | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5.3:13900766-13900785 | MS.gene64875:CDS | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5.3:13900383-13900402 | MS.gene64875:intron | 20.0% |
| !!! | TTGAAAAACAGAATTTTCTA+CGG | - | chr5.3:13902247-13902266 | MS.gene64875:CDS | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5.3:13901326-13901345 | MS.gene64875:intron | 20.0% |
| ! | ACTGAAGCCTATAAATTATT+TGG | - | chr5.3:13901947-13901966 | MS.gene64875:intron | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5.3:13900341-13900360 | None:intergenic | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5.3:13901362-13901381 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5.3:13901696-13901715 | MS.gene64875:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5.3:13900125-13900144 | None:intergenic | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | + | chr5.3:13901260-13901279 | None:intergenic | 25.0% |
| ! | GATTTCAACAATCTAAGAAT+TGG | + | chr5.3:13899455-13899474 | None:intergenic | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | + | chr5.3:13901775-13901794 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5.3:13901621-13901640 | None:intergenic | 25.0% |
| !!! | ATTCTGTTTTTCAATAACTC+TGG | + | chr5.3:13902241-13902260 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5.3:13899491-13899510 | MS.gene64875:CDS | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5.3:13900808-13900827 | MS.gene64875:intron | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | - | chr5.3:13899707-13899726 | MS.gene64875:intron | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5.3:13901325-13901344 | MS.gene64875:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5.3:13899480-13899499 | MS.gene64875:CDS | 25.0% |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5.3:13902148-13902167 | MS.gene64875:CDS | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5.3:13902131-13902150 | MS.gene64875:CDS | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5.3:13899579-13899598 | None:intergenic | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5.3:13900804-13900823 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | + | chr5.3:13901243-13901262 | None:intergenic | 30.0% | |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5.3:13901421-13901440 | MS.gene64875:intron | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5.3:13901137-13901156 | None:intergenic | 30.0% | |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5.3:13900409-13900428 | None:intergenic | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | - | chr5.3:13901799-13901818 | MS.gene64875:intron | 30.0% | |
| TAGCCGCTATTTAAAAACAT+TGG | + | chr5.3:13899713-13899732 | None:intergenic | 30.0% | |
| TATAAGAAGGCAAAAGATGT+TGG | - | chr5.3:13902119-13902138 | MS.gene64875:CDS | 30.0% | |
| TCAATTTGTATGTCCATGAA+GGG | + | chr5.3:13902174-13902193 | None:intergenic | 30.0% | |
| TTATACAAAACAGTGTATCG+TGG | + | chr5.3:13899789-13899808 | None:intergenic | 30.0% | |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5.3:13899556-13899575 | None:intergenic | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | - | chr5.3:13900635-13900654 | MS.gene64875:CDS | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | - | chr5.3:13899813-13899832 | MS.gene64875:intron | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | - | chr5.3:13900634-13900653 | MS.gene64875:CDS | 30.0% | |
| ! | AAAACAGAATTTTCTACGGT+TGG | - | chr5.3:13902251-13902270 | MS.gene64875:CDS | 30.0% |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5.3:13901394-13901413 | None:intergenic | 30.0% |
| ! | TTATGTATTCTGGGTTTGTT+TGG | - | chr5.3:13899652-13899671 | MS.gene64875:intron | 30.0% |
| ! | TTTTTAAATAGCGGCTATAG+CGG | - | chr5.3:13899716-13899735 | MS.gene64875:intron | 30.0% |
| !! | ACAAATTTTGAAAGTTCAGC+AGG | - | chr5.3:13901056-13901075 | MS.gene64875:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5.3:13899976-13899995 | None:intergenic | 30.0% |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5.3:13899479-13899498 | MS.gene64875:CDS | 30.0% |
| AAATTGAGACCAAGAGATTC+AGG | - | chr5.3:13902187-13902206 | MS.gene64875:CDS | 35.0% | |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5.3:13900069-13900088 | MS.gene64875:intron | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5.3:13900542-13900561 | None:intergenic | 35.0% | |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5.3:13901495-13901514 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5.3:13900850-13900869 | None:intergenic | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5.3:13900070-13900089 | MS.gene64875:intron | 35.0% | |
| CTCAATTTGTATGTCCATGA+AGG | + | chr5.3:13902175-13902194 | None:intergenic | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | + | chr5.3:13900524-13900543 | None:intergenic | 35.0% | |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5.3:13899575-13899594 | None:intergenic | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5.3:13900448-13900467 | MS.gene64875:intron | 35.0% | |
| GAACAACGTGATAATTGACT+GGG | + | chr5.3:13901115-13901134 | None:intergenic | 35.0% | |
| GAGATGTTGCAATGTGTATA+AGG | + | chr5.3:13902044-13902063 | None:intergenic | 35.0% | |
| GAGTTCACTTGAAGATTGTT+AGG | + | chr5.3:13902022-13902041 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5.3:13900432-13900451 | MS.gene64875:intron | 35.0% | |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5.3:13901420-13901439 | MS.gene64875:intron | 35.0% | |
| GTTCCAACTTGTATATCATG+TGG | + | chr5.3:13900875-13900894 | None:intergenic | 35.0% | |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5.3:13899557-13899576 | None:intergenic | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | - | chr5.3:13900246-13900265 | MS.gene64875:CDS | 35.0% | |
| TCTCCACATGATATACAAGT+TGG | - | chr5.3:13900869-13900888 | MS.gene64875:intron | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5.3:13900390-13900409 | MS.gene64875:intron | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5.3:13901303-13901322 | MS.gene64875:intron | 35.0% | |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5.3:13900432-13900451 | None:intergenic | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5.3:13901456-13901475 | MS.gene64875:intron | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | - | chr5.3:13899498-13899517 | MS.gene64875:CDS | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5.3:13899755-13899774 | MS.gene64875:intron | 35.0% |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5.3:13900897-13900916 | None:intergenic | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5.3:13899740-13899759 | MS.gene64875:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5.3:13901882-13901901 | MS.gene64875:intron | 35.0% |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5.3:13901746-13901765 | MS.gene64875:intron | 35.0% |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5.3:13899565-13899584 | MS.gene64875:intron | 35.0% |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5.3:13899573-13899592 | MS.gene64875:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5.3:13899404-13899423 | MS.gene64875:CDS | 35.0% |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5.3:13900410-13900429 | MS.gene64875:intron | 35.0% |
| !!! | ACAGGCAAGACTTTTTTTAG+TGG | + | chr5.3:13900972-13900991 | None:intergenic | 35.0% |
| !!! | GCAAGACTTTTTTTAGTGGT+TGG | + | chr5.3:13900968-13900987 | None:intergenic | 35.0% |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5.3:13901312-13901331 | MS.gene64875:intron | 35.0% |
| AACATCTTGCCTGAATCTCT+TGG | + | chr5.3:13902199-13902218 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5.3:13902070-13902089 | MS.gene64875:CDS | 40.0% | |
| AAGTATGCTGTGGAACAGTT+AGG | + | chr5.3:13900615-13900634 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5.3:13901355-13901374 | None:intergenic | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5.3:13900796-13900815 | None:intergenic | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5.3:13902071-13902090 | MS.gene64875:CDS | 40.0% | |
| AGTATGCTGTGGAACAGTTA+GGG | + | chr5.3:13900614-13900633 | None:intergenic | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5.3:13901518-13901537 | MS.gene64875:intron | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5.3:13900640-13900659 | MS.gene64875:CDS | 40.0% | |
| GGAACAACGTGATAATTGAC+TGG | + | chr5.3:13901116-13901135 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5.3:13900171-13900190 | MS.gene64875:CDS | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5.3:13900454-13900473 | MS.gene64875:intron | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5.3:13901158-13901177 | None:intergenic | 40.0% | |
| TATAGGCTTCAGTGCATGTT+TGG | + | chr5.3:13901940-13901959 | None:intergenic | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | - | chr5.3:13900555-13900574 | MS.gene64875:intron | 40.0% | |
| TCATGTGGAGATCATTAAGC+AGG | + | chr5.3:13900860-13900879 | None:intergenic | 40.0% | |
| TCTTCCTTATGAAGAAGACG+AGG | - | chr5.3:13901013-13901032 | MS.gene64875:intron | 40.0% | |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5.3:13900115-13900134 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5.3:13900439-13900458 | None:intergenic | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | + | chr5.3:13900855-13900874 | None:intergenic | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5.3:13900431-13900450 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | + | chr5.3:13901411-13901430 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5.3:13900990-13901009 | None:intergenic | 40.0% | |
| TTGCCTTCTTATAACTGCCA+TGG | + | chr5.3:13902112-13902131 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5.3:13901439-13901458 | MS.gene64875:intron | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5.3:13900824-13900843 | MS.gene64875:intron | 40.0% | |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5.3:13899370-13899389 | None:intergenic | 40.0% | |
| ! | ACTGTTCCACAGCATACTTT+TGG | - | chr5.3:13900616-13900635 | MS.gene64875:CDS | 40.0% |
| ! | ACTTCACCAAAAGTATGCTG+TGG | + | chr5.3:13900625-13900644 | None:intergenic | 40.0% |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5.3:13900881-13900900 | MS.gene64875:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+CGG | + | chr5.3:13901094-13901113 | None:intergenic | 40.0% |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5.3:13899370-13899389 | MS.gene64875:CDS | 40.0% |
| !! | GGCAAGATGTTTTCAAGAGA+AGG | - | chr5.3:13902208-13902227 | MS.gene64875:CDS | 40.0% |
| ACACATTGCAACATCTCTGC+AGG | - | chr5.3:13902047-13902066 | MS.gene64875:intron | 45.0% | |
| AGCAGGTTTGAAAGTTCACC+GGG | - | chr5.3:13901073-13901092 | MS.gene64875:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5.3:13900980-13900999 | MS.gene64875:intron | 45.0% | |
| CAGCAGGTTTGAAAGTTCAC+CGG | - | chr5.3:13901072-13901091 | MS.gene64875:intron | 45.0% | |
| CAGCCATGGCAGTTATAAGA+AGG | - | chr5.3:13902106-13902125 | MS.gene64875:CDS | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5.3:13899359-13899378 | MS.gene64875:CDS | 45.0% | |
| CTGTGGAACAGTTAGGGAAA+TGG | + | chr5.3:13900608-13900627 | None:intergenic | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5.3:13901469-13901488 | MS.gene64875:intron | 45.0% | |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5.3:13900255-13900274 | None:intergenic | 45.0% | |
| GCTTCAGTGCATGTTTGGAT+TGG | + | chr5.3:13901935-13901954 | None:intergenic | 45.0% | |
| TCAGCCTCGTCTTCTTCATA+AGG | + | chr5.3:13901020-13901039 | None:intergenic | 45.0% | |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5.3:13900927-13900946 | MS.gene64875:intron | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5.3:13900256-13900275 | None:intergenic | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5.3:13900096-13900115 | None:intergenic | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5.3:13901885-13901904 | MS.gene64875:intron | 45.0% |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5.3:13900579-13900598 | MS.gene64875:CDS | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5.3:13900651-13900670 | MS.gene64875:CDS | 45.0% |
| ! | TTGCTGCAAATGTTGACTGC+AGG | - | chr5.3:13900578-13900597 | MS.gene64875:CDS | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5.3:13900837-13900856 | None:intergenic | 45.0% |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5.3:13900095-13900114 | MS.gene64875:intron | 45.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5.3:13900110-13900129 | None:intergenic | 50.0% | |
| AGAAGACGAGGCTGAGTTAC+TGG | - | chr5.3:13901025-13901044 | MS.gene64875:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5.3:13900913-13900932 | MS.gene64875:intron | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5.3:13900150-13900169 | MS.gene64875:CDS | 50.0% | |
| CATAGAGAAGAGGCCCTTCA+TGG | - | chr5.3:13902158-13902177 | MS.gene64875:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5.3:13900086-13900105 | None:intergenic | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5.3:13900923-13900942 | MS.gene64875:intron | 50.0% | |
| GCAACCGCAATTGCAACTGT+AGG | + | chr5.3:13900562-13900581 | None:intergenic | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5.3:13902065-13902084 | MS.gene64875:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5.3:13902092-13902111 | MS.gene64875:CDS | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5.3:13902074-13902093 | MS.gene64875:CDS | 50.0% | |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5.3:13900655-13900674 | MS.gene64875:CDS | 50.0% | |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5.3:13899362-13899381 | MS.gene64875:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5.3:13900914-13900933 | MS.gene64875:intron | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | - | chr5.3:13899821-13899840 | MS.gene64875:intron | 50.0% | |
| TGCAACATCTCTGCAGGAAG+AGG | - | chr5.3:13902053-13902072 | MS.gene64875:CDS | 50.0% | |
| ! | TGGCATTGAGACCCGAATCA+CGG | + | chr5.3:13901915-13901934 | None:intergenic | 50.0% |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5.3:13900084-13900103 | MS.gene64875:intron | 50.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5.3:13901486-13901505 | None:intergenic | 55.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | - | chr5.3:13899837-13899856 | MS.gene64875:intron | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5.3:13900921-13900940 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | + | chr5.3:13901896-13901915 | None:intergenic | 55.0% |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5.3:13901478-13901497 | MS.gene64875:intron | 55.0% |
| ACGGTGGCTCACCGTGATTC+GGG | - | chr5.3:13901901-13901920 | MS.gene64875:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | - | chr5.3:13901900-13901919 | MS.gene64875:intron | 60.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | - | chr5.3:13899834-13899853 | MS.gene64875:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 13899347 | 13902296 | 13899347 | ID=MS.gene64875 |
| chr5.3 | mRNA | 13899347 | 13902296 | 13899347 | ID=MS.gene64875.t1;Parent=MS.gene64875 |
| chr5.3 | exon | 13902049 | 13902296 | 13902049 | ID=MS.gene64875.t1.exon1;Parent=MS.gene64875.t1 |
| chr5.3 | CDS | 13902049 | 13902296 | 13902049 | ID=cds.MS.gene64875.t1;Parent=MS.gene64875.t1 |
| chr5.3 | exon | 13900566 | 13900813 | 13900566 | ID=MS.gene64875.t1.exon2;Parent=MS.gene64875.t1 |
| chr5.3 | CDS | 13900566 | 13900813 | 13900566 | ID=cds.MS.gene64875.t1;Parent=MS.gene64875.t1 |
| chr5.3 | exon | 13900104 | 13900318 | 13900104 | ID=MS.gene64875.t1.exon3;Parent=MS.gene64875.t1 |
| chr5.3 | CDS | 13900104 | 13900318 | 13900104 | ID=cds.MS.gene64875.t1;Parent=MS.gene64875.t1 |
| chr5.3 | exon | 13899347 | 13899574 | 13899347 | ID=MS.gene64875.t1.exon4;Parent=MS.gene64875.t1 |
| chr5.3 | CDS | 13899347 | 13899574 | 13899347 | ID=cds.MS.gene64875.t1;Parent=MS.gene64875.t1 |
| Gene Sequence |
| Protein sequence |
