Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64877.t1 | XP_003612350.1 | 94.2 | 311 | 18 | 0 | 1 | 311 | 20 | 330 | 6.80E-161 | 576.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64877.t1 | O81791 | 49.2 | 309 | 129 | 7 | 1 | 294 | 59 | 354 | 1.0e-64 | 248.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64877.t1 | G7K041 | 94.2 | 311 | 18 | 0 | 1 | 311 | 20 | 330 | 4.9e-161 | 576.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64877.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64877.t1 | MTR_5g024070 | 94.212 | 311 | 18 | 0 | 1 | 311 | 20 | 330 | 0.0 | 599 |
| MS.gene64877.t1 | MTR_3g435550 | 36.296 | 135 | 78 | 2 | 162 | 295 | 38 | 165 | 8.91e-22 | 91.3 |
| MS.gene64877.t1 | MTR_3g091700 | 37.600 | 125 | 60 | 2 | 171 | 295 | 148 | 254 | 3.37e-19 | 85.5 |
| MS.gene64877.t1 | MTR_3g104830 | 48.276 | 87 | 40 | 2 | 180 | 264 | 393 | 476 | 1.70e-13 | 71.2 |
| MS.gene64877.t1 | MTR_3g115400 | 45.122 | 82 | 41 | 2 | 158 | 237 | 570 | 649 | 1.39e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64877.t1 | AT4G35590 | 50.809 | 309 | 124 | 9 | 1 | 294 | 9 | 304 | 4.97e-86 | 261 |
| MS.gene64877.t1 | AT4G35590 | 50.809 | 309 | 124 | 9 | 1 | 294 | 59 | 354 | 3.97e-85 | 261 |
| MS.gene64877.t1 | AT1G74480 | 45.217 | 115 | 58 | 2 | 180 | 292 | 131 | 242 | 2.89e-22 | 94.7 |
| MS.gene64877.t1 | AT1G18790 | 43.802 | 121 | 62 | 3 | 175 | 293 | 120 | 236 | 3.93e-22 | 94.0 |
| MS.gene64877.t1 | AT5G66990 | 41.818 | 110 | 60 | 2 | 187 | 295 | 164 | 270 | 7.35e-20 | 87.8 |
| MS.gene64877.t1 | AT5G53040 | 41.739 | 115 | 54 | 1 | 181 | 295 | 147 | 248 | 1.24e-19 | 86.7 |
| MS.gene64877.t1 | AT5G16100 | 50.000 | 64 | 32 | 0 | 174 | 237 | 346 | 409 | 1.46e-13 | 71.2 |
Find 56 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5.3:-13945455 | MS.gene64877:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5.3:-13945367 | MS.gene64877:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5.3:-13947382 | MS.gene64877:CDS |
| AGAAGACGAGGCTGAGTTAC+TGG | 0.328138 | 5.3:-13945798 | MS.gene64877:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5.3:-13945305 | MS.gene64877:intron |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 5.3:+13945415 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5.3:+13945989 | None:intergenic |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5.3:-13945999 | MS.gene64877:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5.3:-13945900 | MS.gene64877:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5.3:+13947247 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5.3:+13947371 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5.3:-13945345 | MS.gene64877:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5.3:-13947325 | MS.gene64877:CDS |
| AGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5.3:+13944540 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.387896 | 5.3:-13945843 | MS.gene64877:CDS |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5.3:+13945905 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.397862 | 5.3:+13945971 | None:intergenic |
| CATAGAGAAGAGGCTCTTCA+TGG | 0.402183 | 5.3:-13944658 | MS.gene64877:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5.3:+13947456 | None:intergenic |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5.3:-13945402 | MS.gene64877:CDS |
| TTGCCTTCTTATCACTGCCA+TGG | 0.457172 | 5.3:+13944707 | None:intergenic |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5.3:-13944685 | MS.gene64877:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5.3:-13945384 | MS.gene64877:CDS |
| TCAGCCTCGTCTTCTTCATA+AGG | 0.476498 | 5.3:+13945806 | None:intergenic |
| AACATCTTGTCTGAATCTCT+TGG | 0.478887 | 5.3:+13944620 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5.3:-13945354 | MS.gene64877:CDS |
| CAGCCATGGCAGTGATAAGA+AGG | 0.499451 | 5.3:-13944710 | MS.gene64877:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 5.3:-13944751 | MS.gene64877:intron |
| GATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5.3:-13944697 | MS.gene64877:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 5.3:+13945976 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 5.3:+13945432 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5.3:-13947453 | MS.gene64877:CDS |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5.3:+13945471 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5.3:+13947270 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5.3:-13945942 | MS.gene64877:CDS |
| TCACGTGGAGATCATTAAGC+AGG | 0.532780 | 5.3:+13945966 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5.3:-13944745 | MS.gene64877:CDS |
| ATCAGAAGATGCTAATTGCT+AGG | 0.535738 | 5.3:+13944534 | None:intergenic |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 5.3:-13945403 | MS.gene64877:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5.3:+13947269 | None:intergenic |
| TCTCCACGTGATATACAAGT+TGG | 0.555482 | 5.3:-13945954 | MS.gene64877:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5.3:-13944746 | MS.gene64877:CDS |
| AAAAGGAAAACATAGAGAAG+AGG | 0.578123 | 5.3:-13944668 | MS.gene64877:CDS |
| TTGAGATCCTGATTAAGCAC+AGG | 0.580889 | 5.3:+13945836 | None:intergenic |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5.3:-13944724 | MS.gene64877:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5.3:+13945331 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5.3:-13944742 | MS.gene64877:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5.3:-13945909 | MS.gene64877:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5.3:-13947464 | MS.gene64877:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5.3:-13945910 | MS.gene64877:CDS |
| TCTTCCTTATGAAGAAGACG+AGG | 0.662936 | 5.3:-13945810 | MS.gene64877:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5.3:+13945464 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5.3:+13945340 | None:intergenic |
| GTTCCAACTTGTATATCACG+TGG | 0.670645 | 5.3:+13945951 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5.3:-13945896 | MS.gene64877:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5.3:-13947461 | MS.gene64877:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAATAAATAAAAAAG+TGG | + | chr5.3:13946749-13946768 | None:intergenic | 10.0% |
| !!! | TATACACTTATTTTATTAAT+AGG | - | chr5.3:13946374-13946393 | MS.gene64877:intron | 10.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5.3:13944814-13944833 | None:intergenic | 15.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5.3:13944813-13944832 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5.3:13944841-13944860 | MS.gene64877:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | - | chr5.3:13946382-13946401 | MS.gene64877:intron | 15.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5.3:13946566-13946585 | MS.gene64877:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5.3:13945322-13945341 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5.3:13945396-13945415 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5.3:13946934-13946953 | MS.gene64877:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5.3:13944840-13944859 | MS.gene64877:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | + | chr5.3:13946369-13946388 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5.3:13945397-13945416 | None:intergenic | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5.3:13946909-13946928 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | + | chr5.3:13947162-13947181 | None:intergenic | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5.3:13947060-13947079 | None:intergenic | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5.3:13945964-13945983 | MS.gene64877:CDS | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5.3:13945581-13945600 | MS.gene64877:intron | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5.3:13946524-13946543 | MS.gene64877:intron | 20.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5.3:13945539-13945558 | None:intergenic | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5.3:13946560-13946579 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5.3:13946898-13946917 | MS.gene64877:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5.3:13945323-13945342 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | + | chr5.3:13946848-13946867 | None:intergenic | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | + | chr5.3:13946458-13946477 | None:intergenic | 25.0% |
| ! | GTACAGAAAATATTTGTACA+AGG | + | chr5.3:13946977-13946996 | None:intergenic | 25.0% |
| ! | GTTGTCAATTAGTATATGTT+TGG | - | chr5.3:13947001-13947020 | MS.gene64877:intron | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5.3:13946823-13946842 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5.3:13944689-13944708 | MS.gene64877:CDS | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5.3:13946006-13946025 | MS.gene64877:intron | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | - | chr5.3:13944905-13944924 | MS.gene64877:intron | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5.3:13946523-13946542 | MS.gene64877:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5.3:13944678-13944697 | MS.gene64877:CDS | 25.0% |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5.3:13947353-13947372 | MS.gene64877:CDS | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5.3:13947336-13947355 | MS.gene64877:CDS | 30.0% | |
| AAGTATGTTGTAGAACAGTT+AGG | + | chr5.3:13945813-13945832 | None:intergenic | 30.0% | |
| AGTATGTTGTAGAACAGTTA+GGG | + | chr5.3:13945812-13945831 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5.3:13944777-13944796 | None:intergenic | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5.3:13946002-13946021 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | + | chr5.3:13946441-13946460 | None:intergenic | 30.0% | |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5.3:13946619-13946638 | MS.gene64877:intron | 30.0% | |
| GATTTCAACAACCTAAGAAT+TGG | + | chr5.3:13944653-13944672 | None:intergenic | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5.3:13946335-13946354 | None:intergenic | 30.0% | |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5.3:13945607-13945626 | None:intergenic | 30.0% | |
| TAAGGAGTTCACTTAAAGAT+CGG | + | chr5.3:13947231-13947250 | None:intergenic | 30.0% | |
| TAGCCGCTATTTAAAAACAT+TGG | + | chr5.3:13944911-13944930 | None:intergenic | 30.0% | |
| TATAGGCTTCAGTGTATATT+TGG | + | chr5.3:13947145-13947164 | None:intergenic | 30.0% | |
| TTATACAAAACAGTGTATCG+TGG | + | chr5.3:13944987-13945006 | None:intergenic | 30.0% | |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5.3:13944754-13944773 | None:intergenic | 30.0% | |
| TTGGAGAAGTTAGAATTTGA+GGG | - | chr5.3:13945833-13945852 | MS.gene64877:CDS | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | - | chr5.3:13945011-13945030 | MS.gene64877:intron | 30.0% | |
| TTTGGAGAAGTTAGAATTTG+AGG | - | chr5.3:13945832-13945851 | MS.gene64877:CDS | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5.3:13946592-13946611 | None:intergenic | 30.0% |
| ! | ACTGAAGCCTATAAAGTATT+TGG | - | chr5.3:13947152-13947171 | MS.gene64877:intron | 30.0% |
| ! | ACTGTTCTACAACATACTTT+TGG | - | chr5.3:13945814-13945833 | MS.gene64877:CDS | 30.0% |
| ! | TTATGTATTCTGGGTTTGTT+TGG | - | chr5.3:13944850-13944869 | MS.gene64877:intron | 30.0% |
| ! | TTTTTAAATAGCGGCTATAG+CGG | - | chr5.3:13944914-13944933 | MS.gene64877:intron | 30.0% |
| !! | ACAAATTTTGAAAGTTCAGC+AGG | - | chr5.3:13946254-13946273 | MS.gene64877:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5.3:13945174-13945193 | None:intergenic | 30.0% |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5.3:13944677-13944696 | MS.gene64877:CDS | 30.0% |
| AACATCTTGTCTGAATCTCT+TGG | + | chr5.3:13947404-13947423 | None:intergenic | 35.0% | |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5.3:13945267-13945286 | MS.gene64877:intron | 35.0% | |
| AGAGTTTGATAAAACCACAG+TGG | - | chr5.3:13947032-13947051 | MS.gene64877:intron | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5.3:13945740-13945759 | None:intergenic | 35.0% | |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5.3:13946693-13946712 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5.3:13946048-13946067 | None:intergenic | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5.3:13945268-13945287 | MS.gene64877:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | + | chr5.3:13945722-13945741 | None:intergenic | 35.0% | |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5.3:13944773-13944792 | None:intergenic | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5.3:13945646-13945665 | MS.gene64877:intron | 35.0% | |
| GAACAACGTGATAATTGACT+GGG | + | chr5.3:13946313-13946332 | None:intergenic | 35.0% | |
| GATAAGAAGGCAAAAGATGT+TGG | - | chr5.3:13947324-13947343 | MS.gene64877:CDS | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5.3:13945630-13945649 | MS.gene64877:intron | 35.0% | |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5.3:13946618-13946637 | MS.gene64877:intron | 35.0% | |
| GCTTCAGTGTATATTTGGAT+TGG | + | chr5.3:13947140-13947159 | None:intergenic | 35.0% | |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5.3:13944755-13944774 | None:intergenic | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | - | chr5.3:13945444-13945463 | MS.gene64877:CDS | 35.0% | |
| TGAAAGCTACTCCAATTCTT+AGG | - | chr5.3:13944639-13944658 | MS.gene64877:CDS | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5.3:13945588-13945607 | MS.gene64877:intron | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5.3:13946501-13946520 | MS.gene64877:intron | 35.0% | |
| TTGTAGAACAGTTAGGGAAA+TGG | + | chr5.3:13945806-13945825 | None:intergenic | 35.0% | |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5.3:13945630-13945649 | None:intergenic | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5.3:13946654-13946673 | MS.gene64877:intron | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | - | chr5.3:13944696-13944715 | MS.gene64877:CDS | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5.3:13944953-13944972 | MS.gene64877:intron | 35.0% |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5.3:13946095-13946114 | None:intergenic | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5.3:13944938-13944957 | MS.gene64877:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5.3:13947084-13947103 | MS.gene64877:intron | 35.0% |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5.3:13946948-13946967 | MS.gene64877:intron | 35.0% |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5.3:13944763-13944782 | MS.gene64877:intron | 35.0% |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5.3:13944771-13944790 | MS.gene64877:intron | 35.0% |
| !! | GACAAGATGTTTTCAAGAGA+AGG | - | chr5.3:13947413-13947432 | MS.gene64877:CDS | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5.3:13944602-13944621 | MS.gene64877:CDS | 35.0% |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5.3:13945608-13945627 | MS.gene64877:intron | 35.0% |
| !!! | ACAGGCAAGACTTTTTTTAG+TGG | + | chr5.3:13946170-13946189 | None:intergenic | 35.0% |
| !!! | GCAAGACTTTTTTTAGTGGT+TGG | + | chr5.3:13946166-13946185 | None:intergenic | 35.0% |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5.3:13946510-13946529 | MS.gene64877:intron | 35.0% |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5.3:13947275-13947294 | MS.gene64877:CDS | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5.3:13946553-13946572 | None:intergenic | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5.3:13945994-13946013 | None:intergenic | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5.3:13947276-13947295 | MS.gene64877:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5.3:13946716-13946735 | MS.gene64877:intron | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5.3:13945838-13945857 | MS.gene64877:CDS | 40.0% | |
| GAGTTCACTTAAAGATCGGT+AGG | + | chr5.3:13947227-13947246 | None:intergenic | 40.0% | |
| GCGATGTTGTCATGTGTATA+AGG | + | chr5.3:13947249-13947268 | None:intergenic | 40.0% | |
| GGAACAACGTGATAATTGAC+TGG | + | chr5.3:13946314-13946333 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5.3:13945369-13945388 | MS.gene64877:CDS | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5.3:13945652-13945671 | MS.gene64877:intron | 40.0% | |
| GTTCCAACTTGTATATCACG+TGG | + | chr5.3:13946073-13946092 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5.3:13946356-13946375 | None:intergenic | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | - | chr5.3:13945753-13945772 | MS.gene64877:intron | 40.0% | |
| TCTCCACGTGATATACAAGT+TGG | - | chr5.3:13946067-13946086 | MS.gene64877:intron | 40.0% | |
| TCTTCCTTATGAAGAAGACG+AGG | - | chr5.3:13946211-13946230 | MS.gene64877:intron | 40.0% | |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5.3:13945313-13945332 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5.3:13945637-13945656 | None:intergenic | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | + | chr5.3:13946053-13946072 | None:intergenic | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5.3:13945629-13945648 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | + | chr5.3:13946609-13946628 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5.3:13946188-13946207 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5.3:13946637-13946656 | MS.gene64877:intron | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5.3:13946022-13946041 | MS.gene64877:intron | 40.0% | |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5.3:13944568-13944587 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5.3:13946079-13946098 | MS.gene64877:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+CGG | + | chr5.3:13946292-13946311 | None:intergenic | 40.0% |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5.3:13944568-13944587 | MS.gene64877:CDS | 40.0% |
| AGCAGGTTTGAAAGTTCACC+GGG | - | chr5.3:13946271-13946290 | MS.gene64877:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5.3:13946178-13946197 | MS.gene64877:intron | 45.0% | |
| CAGCAGGTTTGAAAGTTCAC+CGG | - | chr5.3:13946270-13946289 | MS.gene64877:intron | 45.0% | |
| CATAGAGAAGAGGCTCTTCA+TGG | - | chr5.3:13947363-13947382 | MS.gene64877:CDS | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5.3:13944557-13944576 | MS.gene64877:CDS | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5.3:13946667-13946686 | MS.gene64877:intron | 45.0% | |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5.3:13945453-13945472 | None:intergenic | 45.0% | |
| TCACGTGGAGATCATTAAGC+AGG | + | chr5.3:13946058-13946077 | None:intergenic | 45.0% | |
| TCAGCCTCGTCTTCTTCATA+AGG | + | chr5.3:13946218-13946237 | None:intergenic | 45.0% | |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5.3:13946125-13946144 | MS.gene64877:intron | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5.3:13945454-13945473 | None:intergenic | 45.0% | |
| TTGCCTTCTTATCACTGCCA+TGG | + | chr5.3:13947317-13947336 | None:intergenic | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5.3:13945294-13945313 | None:intergenic | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5.3:13947087-13947106 | MS.gene64877:intron | 45.0% |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5.3:13945777-13945796 | MS.gene64877:CDS | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5.3:13945849-13945868 | MS.gene64877:CDS | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5.3:13946035-13946054 | None:intergenic | 45.0% |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5.3:13945293-13945312 | MS.gene64877:intron | 45.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5.3:13945308-13945327 | None:intergenic | 50.0% | |
| ACACATGACAACATCGCTGC+AGG | - | chr5.3:13947252-13947271 | MS.gene64877:CDS | 50.0% | |
| AGAAGACGAGGCTGAGTTAC+TGG | - | chr5.3:13946223-13946242 | MS.gene64877:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5.3:13946111-13946130 | MS.gene64877:intron | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5.3:13945348-13945367 | MS.gene64877:CDS | 50.0% | |
| CAGCCATGGCAGTGATAAGA+AGG | - | chr5.3:13947311-13947330 | MS.gene64877:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5.3:13945284-13945303 | None:intergenic | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5.3:13946121-13946140 | MS.gene64877:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5.3:13947270-13947289 | MS.gene64877:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5.3:13947297-13947316 | MS.gene64877:CDS | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5.3:13947279-13947298 | MS.gene64877:CDS | 50.0% | |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5.3:13945853-13945872 | MS.gene64877:CDS | 50.0% | |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5.3:13944560-13944579 | MS.gene64877:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5.3:13946112-13946131 | MS.gene64877:intron | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | - | chr5.3:13945019-13945038 | MS.gene64877:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | - | chr5.3:13945776-13945795 | MS.gene64877:CDS | 50.0% |
| !! | ACAAAATCACGGTGCCACTG+TGG | + | chr5.3:13947049-13947068 | None:intergenic | 50.0% |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5.3:13945282-13945301 | MS.gene64877:intron | 50.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5.3:13946684-13946703 | None:intergenic | 55.0% | |
| CGTTGAGACTGCCCGAATCA+CGG | + | chr5.3:13947117-13947136 | None:intergenic | 55.0% | |
| GACAACATCGCTGCAGGAAG+AGG | - | chr5.3:13947258-13947277 | MS.gene64877:CDS | 55.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | + | chr5.3:13945760-13945779 | None:intergenic | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5.3:13946119-13946138 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | + | chr5.3:13947098-13947117 | None:intergenic | 55.0% |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5.3:13946676-13946695 | MS.gene64877:intron | 55.0% |
| ACGGTGGCTCACCGTGATTC+GGG | - | chr5.3:13947103-13947122 | MS.gene64877:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | - | chr5.3:13947102-13947121 | MS.gene64877:intron | 60.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | - | chr5.3:13945032-13945051 | MS.gene64877:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 13944545 | 13947498 | 13944545 | ID=MS.gene64877 |
| chr5.3 | mRNA | 13944545 | 13947498 | 13944545 | ID=MS.gene64877.t1;Parent=MS.gene64877 |
| chr5.3 | exon | 13947251 | 13947498 | 13947251 | ID=MS.gene64877.t1.exon1;Parent=MS.gene64877.t1 |
| chr5.3 | CDS | 13947251 | 13947498 | 13947251 | ID=cds.MS.gene64877.t1;Parent=MS.gene64877.t1 |
| chr5.3 | exon | 13945768 | 13946015 | 13945768 | ID=MS.gene64877.t1.exon2;Parent=MS.gene64877.t1 |
| chr5.3 | CDS | 13945768 | 13946015 | 13945768 | ID=cds.MS.gene64877.t1;Parent=MS.gene64877.t1 |
| chr5.3 | exon | 13945306 | 13945520 | 13945306 | ID=MS.gene64877.t1.exon3;Parent=MS.gene64877.t1 |
| chr5.3 | CDS | 13945306 | 13945520 | 13945306 | ID=cds.MS.gene64877.t1;Parent=MS.gene64877.t1 |
| chr5.3 | exon | 13944545 | 13944769 | 13944545 | ID=MS.gene64877.t1.exon4;Parent=MS.gene64877.t1 |
| chr5.3 | CDS | 13944545 | 13944769 | 13944545 | ID=cds.MS.gene64877.t1;Parent=MS.gene64877.t1 |
| Gene Sequence |
| Protein sequence |
