Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64898.t1 | XP_003612379.1 | 92.5 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 7.50E-219 | 769.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64898.t1 | F4IXE7 | 30.9 | 427 | 261 | 6 | 3 | 419 | 621 | 1023 | 3.5e-55 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64898.t1 | G7K198 | 92.5 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 5.4e-219 | 769.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64898.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64898.t1 | MTR_5g024390 | 93.692 | 428 | 27 | 0 | 1 | 428 | 1 | 428 | 0.0 | 829 |
| MS.gene64898.t1 | MTR_5g024500 | 92.523 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 0.0 | 820 |
| MS.gene64898.t1 | MTR_3g103110 | 68.103 | 464 | 108 | 4 | 3 | 428 | 339 | 800 | 0.0 | 652 |
| MS.gene64898.t1 | MTR_7g109640 | 70.776 | 438 | 91 | 4 | 3 | 428 | 384 | 796 | 0.0 | 639 |
| MS.gene64898.t1 | MTR_3g103120 | 66.743 | 439 | 112 | 3 | 2 | 428 | 425 | 841 | 0.0 | 581 |
| MS.gene64898.t1 | MTR_5g071340 | 42.725 | 433 | 209 | 8 | 3 | 421 | 679 | 1086 | 3.95e-111 | 352 |
| MS.gene64898.t1 | MTR_3g464550 | 42.824 | 432 | 210 | 8 | 1 | 419 | 601 | 1008 | 5.49e-108 | 343 |
| MS.gene64898.t1 | MTR_3g103160 | 37.441 | 422 | 172 | 10 | 2 | 421 | 107 | 438 | 3.96e-71 | 231 |
| MS.gene64898.t1 | MTR_2g078040 | 34.426 | 427 | 248 | 8 | 3 | 419 | 762 | 1166 | 7.51e-71 | 243 |
| MS.gene64898.t1 | MTR_1g103830 | 35.129 | 427 | 247 | 5 | 3 | 419 | 606 | 1012 | 3.16e-68 | 235 |
| MS.gene64898.t1 | MTR_1g072130 | 32.353 | 408 | 244 | 6 | 3 | 398 | 812 | 1199 | 1.99e-60 | 213 |
| MS.gene64898.t1 | MTR_7g095140 | 31.579 | 304 | 196 | 5 | 125 | 425 | 13 | 307 | 7.63e-49 | 170 |
| MS.gene64898.t1 | MTR_1g068930 | 25.161 | 465 | 249 | 15 | 4 | 419 | 478 | 892 | 1.33e-39 | 152 |
| MS.gene64898.t1 | MTR_1g068930 | 25.161 | 465 | 249 | 15 | 4 | 419 | 441 | 855 | 1.40e-39 | 151 |
| MS.gene64898.t1 | MTR_4g099530 | 27.209 | 430 | 258 | 12 | 3 | 419 | 111 | 498 | 2.12e-39 | 148 |
| MS.gene64898.t1 | MTR_4g056990 | 24.274 | 482 | 268 | 15 | 2 | 428 | 189 | 628 | 1.42e-31 | 127 |
| MS.gene64898.t1 | MTR_4g057290 | 25.822 | 426 | 211 | 10 | 37 | 394 | 126 | 514 | 2.41e-30 | 123 |
| MS.gene64898.t1 | MTR_7g102610 | 24.468 | 470 | 237 | 15 | 29 | 426 | 527 | 950 | 4.03e-30 | 124 |
| MS.gene64898.t1 | MTR_4g050090 | 23.673 | 490 | 251 | 13 | 12 | 422 | 199 | 644 | 1.55e-28 | 119 |
| MS.gene64898.t1 | MTR_1g062330 | 23.007 | 439 | 264 | 15 | 37 | 421 | 386 | 804 | 3.95e-21 | 96.7 |
| MS.gene64898.t1 | MTR_6g061000 | 51.136 | 88 | 32 | 2 | 90 | 177 | 25 | 101 | 3.60e-19 | 82.8 |
| MS.gene64898.t1 | MTR_2g084425 | 31.111 | 180 | 115 | 4 | 245 | 423 | 847 | 1018 | 4.12e-18 | 87.4 |
| MS.gene64898.t1 | MTR_2g084425 | 23.129 | 294 | 144 | 6 | 7 | 251 | 465 | 725 | 2.10e-14 | 75.9 |
| MS.gene64898.t1 | MTR_2g084425 | 23.129 | 294 | 144 | 6 | 7 | 251 | 465 | 725 | 2.86e-14 | 75.5 |
| MS.gene64898.t1 | MTR_3g109988 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 3.41e-13 | 70.9 |
| MS.gene64898.t1 | MTR_3g110005 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 3.41e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64898.t1 | AT5G58610 | 40.783 | 434 | 216 | 7 | 3 | 419 | 368 | 777 | 5.52e-98 | 312 |
| MS.gene64898.t1 | AT5G58610 | 40.783 | 434 | 216 | 7 | 3 | 419 | 599 | 1008 | 1.77e-96 | 311 |
| MS.gene64898.t1 | AT5G58610 | 40.783 | 434 | 216 | 7 | 3 | 419 | 599 | 1008 | 1.77e-96 | 311 |
| MS.gene64898.t1 | AT5G58610 | 40.625 | 448 | 219 | 9 | 3 | 428 | 590 | 1012 | 3.59e-96 | 311 |
| MS.gene64898.t1 | AT5G58610 | 40.625 | 448 | 219 | 9 | 3 | 428 | 590 | 1012 | 3.61e-96 | 311 |
| MS.gene64898.t1 | AT5G58610 | 40.625 | 448 | 219 | 9 | 3 | 428 | 599 | 1021 | 3.61e-96 | 311 |
| MS.gene64898.t1 | AT5G58610 | 38.902 | 437 | 216 | 8 | 3 | 428 | 590 | 986 | 6.18e-86 | 283 |
| MS.gene64898.t1 | AT5G58610 | 38.902 | 437 | 216 | 8 | 3 | 428 | 590 | 986 | 6.87e-86 | 283 |
| MS.gene64898.t1 | AT5G58610 | 40.576 | 382 | 186 | 7 | 3 | 367 | 599 | 956 | 1.86e-81 | 270 |
| MS.gene64898.t1 | AT5G58610 | 40.576 | 382 | 186 | 7 | 3 | 367 | 590 | 947 | 1.97e-81 | 270 |
| MS.gene64898.t1 | AT5G58610 | 39.826 | 344 | 166 | 7 | 3 | 329 | 590 | 909 | 1.58e-67 | 231 |
| MS.gene64898.t1 | AT5G36740 | 32.168 | 429 | 255 | 7 | 3 | 419 | 545 | 949 | 1.34e-66 | 230 |
| MS.gene64898.t1 | AT5G36740 | 32.168 | 429 | 255 | 7 | 3 | 419 | 545 | 949 | 1.34e-66 | 230 |
| MS.gene64898.t1 | AT3G14980 | 31.871 | 433 | 261 | 6 | 3 | 425 | 621 | 1029 | 5.22e-65 | 225 |
| MS.gene64898.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 576 | 984 | 9.09e-65 | 225 |
| MS.gene64898.t1 | AT3G14980 | 31.871 | 433 | 261 | 6 | 3 | 425 | 621 | 1029 | 1.13e-64 | 225 |
| MS.gene64898.t1 | AT3G14980 | 31.871 | 433 | 261 | 6 | 3 | 425 | 621 | 1029 | 1.13e-64 | 225 |
| MS.gene64898.t1 | AT3G14980 | 31.871 | 433 | 261 | 6 | 3 | 425 | 621 | 1029 | 1.13e-64 | 225 |
| MS.gene64898.t1 | AT1G05380 | 32.787 | 427 | 256 | 6 | 3 | 419 | 520 | 925 | 1.69e-63 | 221 |
| MS.gene64898.t1 | AT1G05380 | 32.787 | 427 | 256 | 6 | 3 | 419 | 520 | 925 | 1.69e-63 | 221 |
| MS.gene64898.t1 | AT1G05380 | 32.787 | 427 | 256 | 6 | 3 | 419 | 520 | 925 | 1.69e-63 | 221 |
| MS.gene64898.t1 | AT5G36740 | 31.207 | 439 | 256 | 8 | 3 | 419 | 392 | 806 | 3.88e-63 | 220 |
| MS.gene64898.t1 | AT5G63900 | 36.556 | 331 | 191 | 8 | 94 | 421 | 228 | 542 | 2.35e-62 | 211 |
| MS.gene64898.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 2.63e-59 | 209 |
| MS.gene64898.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 3.28e-59 | 209 |
| MS.gene64898.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 3.28e-59 | 209 |
| MS.gene64898.t1 | AT5G36670 | 30.112 | 445 | 257 | 9 | 3 | 419 | 545 | 963 | 2.85e-58 | 206 |
| MS.gene64898.t1 | AT5G36670 | 30.112 | 445 | 257 | 9 | 3 | 419 | 545 | 963 | 2.85e-58 | 206 |
| MS.gene64898.t1 | AT5G36740 | 32.075 | 371 | 216 | 7 | 3 | 361 | 545 | 891 | 1.86e-56 | 200 |
| MS.gene64898.t1 | AT5G36740 | 32.075 | 371 | 216 | 7 | 3 | 361 | 545 | 891 | 1.86e-56 | 200 |
| MS.gene64898.t1 | AT5G36670 | 32.075 | 371 | 216 | 7 | 3 | 361 | 545 | 891 | 1.86e-56 | 200 |
| MS.gene64898.t1 | AT5G36670 | 29.231 | 455 | 258 | 10 | 3 | 419 | 392 | 820 | 1.35e-54 | 196 |
| MS.gene64898.t1 | AT5G36670 | 29.231 | 455 | 258 | 10 | 3 | 419 | 545 | 973 | 4.17e-54 | 194 |
| MS.gene64898.t1 | AT3G14980 | 30.769 | 338 | 200 | 6 | 3 | 330 | 621 | 934 | 2.21e-43 | 163 |
| MS.gene64898.t1 | AT3G53680 | 28.571 | 469 | 231 | 17 | 4 | 417 | 411 | 830 | 7.33e-42 | 158 |
| MS.gene64898.t1 | AT3G53680 | 28.571 | 469 | 231 | 17 | 4 | 417 | 409 | 828 | 7.65e-42 | 158 |
| MS.gene64898.t1 | AT2G37520 | 26.050 | 476 | 235 | 14 | 4 | 417 | 392 | 812 | 2.59e-40 | 154 |
| MS.gene64898.t1 | AT2G36720 | 25.000 | 484 | 247 | 13 | 13 | 423 | 533 | 973 | 3.03e-38 | 148 |
| MS.gene64898.t1 | AT2G36720 | 25.000 | 484 | 247 | 13 | 13 | 423 | 533 | 973 | 3.03e-38 | 148 |
| MS.gene64898.t1 | AT2G27980 | 24.440 | 491 | 261 | 15 | 6 | 422 | 606 | 1060 | 9.94e-32 | 129 |
Find 67 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTATCTGCAACCTTAAT+TGG | 0.181951 | 5.3:+14170850 | None:intergenic |
| TTCACATTCTTGTTTGCATT+TGG | 0.183779 | 5.3:+14171035 | None:intergenic |
| TGGTTTCTATAATGTAATTT+TGG | 0.224054 | 5.3:-14170635 | MS.gene64898:CDS |
| GTTTGTTCAGTTTGTGGTTT+TGG | 0.236361 | 5.3:-14171180 | MS.gene64898:CDS |
| GTGGCAACTATAAGGATTTA+TGG | 0.245404 | 5.3:-14170589 | MS.gene64898:CDS |
| ATCAACTCTCTTCCTGATAA+AGG | 0.280267 | 5.3:+14170709 | None:intergenic |
| TCACATTCTTGTTTGCATTT+GGG | 0.312904 | 5.3:+14171036 | None:intergenic |
| GCATTCCACCTCCGTTGTTT+AGG | 0.320877 | 5.3:-14171123 | MS.gene64898:CDS |
| GTTGATAAAGAATCAAGTTT+TGG | 0.324712 | 5.3:-14171544 | MS.gene64898:CDS |
| TGATTTCAGTGGCAACTATA+AGG | 0.339394 | 5.3:-14170597 | MS.gene64898:CDS |
| TTATGTCTAAAGAAGTTGTT+AGG | 0.347395 | 5.3:-14170877 | MS.gene64898:CDS |
| AAAGGAGAGTAAGTTGAATA+TGG | 0.354999 | 5.3:-14170773 | MS.gene64898:CDS |
| AATTTAATCACATGGAGAAT+TGG | 0.356404 | 5.3:-14170930 | MS.gene64898:CDS |
| AAACGATGGGTATTGTTTCT+TGG | 0.373623 | 5.3:-14171566 | None:intergenic |
| GATAGTGTTTGTTCAGTTTG+TGG | 0.378867 | 5.3:-14171186 | MS.gene64898:CDS |
| CTGGGTTCGCATGATCATAT+AGG | 0.387880 | 5.3:-14171315 | MS.gene64898:CDS |
| GGATTGTCAAAGGGAAGCTC+TGG | 0.400874 | 5.3:-14171334 | MS.gene64898:CDS |
| AACACTTGGACAAGATCATT+TGG | 0.403595 | 5.3:-14170418 | MS.gene64898:CDS |
| AAGCACTGAAAAGACCTATA+TGG | 0.410177 | 5.3:-14170312 | MS.gene64898:CDS |
| CAAGCTCGCTTGAACTTTCG+TGG | 0.419956 | 5.3:-14170655 | MS.gene64898:CDS |
| GGCTCTTGGTGTATTGTATG+AGG | 0.423950 | 5.3:-14170752 | MS.gene64898:CDS |
| GTTGTTAGGAAAACCAATTA+AGG | 0.435095 | 5.3:-14170863 | MS.gene64898:CDS |
| AGTAACAAAGTTGTCAAAAG+AGG | 0.441397 | 5.3:-14171492 | MS.gene64898:CDS |
| TGAAAAGGAGTTTAATCAAA+AGG | 0.444347 | 5.3:-14170791 | MS.gene64898:CDS |
| CATGGACATTGGTGAAGAAT+GGG | 0.446661 | 5.3:-14170825 | MS.gene64898:CDS |
| ACATGGACATTGGTGAAGAA+TGG | 0.448317 | 5.3:-14170826 | MS.gene64898:CDS |
| ATCGAGTTCCGCTTGGTGAA+TGG | 0.464422 | 5.3:-14171095 | MS.gene64898:CDS |
| CAAGCAATGCAAGGCCATAT+AGG | 0.465235 | 5.3:+14170298 | None:intergenic |
| TGGGAATAGTGTTGATGAAA+AGG | 0.465280 | 5.3:-14170806 | MS.gene64898:CDS |
| CCTGATAAAGGATCAAAAGT+TGG | 0.477884 | 5.3:+14170721 | None:intergenic |
| TTGTCTTCGATACTGTTCCT+TGG | 0.482098 | 5.3:+14170534 | None:intergenic |
| TGGGTTCGCATGATCATATA+GGG | 0.493127 | 5.3:-14171314 | MS.gene64898:CDS |
| GCTCTTGGTGTATTGTATGA+GGG | 0.493509 | 5.3:-14170751 | MS.gene64898:CDS |
| GGAAGACGGAAGGTCGTTGT+TGG | 0.494542 | 5.3:-14171355 | MS.gene64898:CDS |
| GAGAAACAGTTAACTCGCTT+AGG | 0.496257 | 5.3:-14170481 | MS.gene64898:CDS |
| AGGAATGTGTCATTTGTTGA+TGG | 0.496868 | 5.3:-14170512 | MS.gene64898:CDS |
| CAGAGGATGCTATGAACACT+TGG | 0.500216 | 5.3:-14170432 | MS.gene64898:CDS |
| TCCAACAAAATACTAGTAGA+TGG | 0.510261 | 5.3:+14171375 | None:intergenic |
| GTGATTAAATTCAATTCCTA+CGG | 0.512914 | 5.3:+14170942 | None:intergenic |
| GTCGTTGTTGGATTGTCAAA+GGG | 0.517227 | 5.3:-14171343 | MS.gene64898:CDS |
| TCTTCGATACTGTTCCTTGG+TGG | 0.524421 | 5.3:+14170537 | None:intergenic |
| GGTCGTTGTTGGATTGTCAA+AGG | 0.528790 | 5.3:-14171344 | MS.gene64898:CDS |
| AGTAAGTTGAATATGGCTCT+TGG | 0.540429 | 5.3:-14170766 | MS.gene64898:CDS |
| GGTCTCAATCGAGTTCCGCT+TGG | 0.551276 | 5.3:-14171102 | MS.gene64898:CDS |
| ATATCACTTTGGATGCGTAA+AGG | 0.554258 | 5.3:-14170965 | MS.gene64898:CDS |
| CACCGGCTTCGAGTCTCATG+CGG | 0.565673 | 5.3:-14171415 | MS.gene64898:CDS |
| ACCGGCTTCGAGTCTCATGC+GGG | 0.580291 | 5.3:-14171414 | MS.gene64898:CDS |
| GTAACAAAGTTGTCAAAAGA+GGG | 0.581494 | 5.3:-14171491 | MS.gene64898:CDS |
| TGAGACCTAAACAACGGAGG+TGG | 0.586505 | 5.3:+14171118 | None:intergenic |
| GATTGTCAAAGGGAAGCTCT+GGG | 0.597706 | 5.3:-14171333 | MS.gene64898:CDS |
| AGGAATTGAATTTAATCACA+TGG | 0.598130 | 5.3:-14170938 | MS.gene64898:CDS |
| TTTCAGTGCTTTGAGACACA+TGG | 0.604056 | 5.3:+14170324 | None:intergenic |
| AGATAATCTAACATGGACAT+TGG | 0.607457 | 5.3:-14170836 | MS.gene64898:CDS |
| CTCCAACATCAAGCAATGCA+AGG | 0.609626 | 5.3:+14170289 | None:intergenic |
| CAACGGAGGTGGAATGCAGA+AGG | 0.622944 | 5.3:+14171129 | None:intergenic |
| ACCCGCATGAGACTCGAAGC+CGG | 0.625739 | 5.3:+14171413 | None:intergenic |
| ATTACTTCTGCATTCCTCAG+AGG | 0.633654 | 5.3:-14170449 | MS.gene64898:CDS |
| ACAAGAATGTGAAGATCACA+AGG | 0.637763 | 5.3:-14171025 | MS.gene64898:CDS |
| AATGGGTGAAGTGATTTCAG+TGG | 0.642896 | 5.3:-14170608 | MS.gene64898:CDS |
| TTTGGATGCGTAAAGGCCGT+AGG | 0.643030 | 5.3:-14170958 | MS.gene64898:CDS |
| AGGTTGCAGATAATCTAACA+TGG | 0.665981 | 5.3:-14170843 | MS.gene64898:CDS |
| GGACAAAACCATTCACCAAG+CGG | 0.675521 | 5.3:+14171087 | None:intergenic |
| CTCGATTGAGACCTAAACAA+CGG | 0.677857 | 5.3:+14171112 | None:intergenic |
| AAGGAACAGTATCGAAGACA+AGG | 0.678537 | 5.3:-14170532 | MS.gene64898:CDS |
| ACTACCCTGACAGAAAACAT+TGG | 0.690433 | 5.3:+14171512 | None:intergenic |
| AGTGTTCATAGCATCCTCTG+AGG | 0.736105 | 5.3:+14170435 | None:intergenic |
| GATTGAGACCTAAACAACGG+AGG | 0.762353 | 5.3:+14171115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTAATTTTGGAGAAAAT+GGG | - | chr5.3:14171233-14171252 | MS.gene64898:CDS | 20.0% |
| !!! | ACTTTTTTAGAATTTGAGAA+TGG | - | chr5.3:14171509-14171528 | MS.gene64898:CDS | 20.0% |
| !!! | TAATGTAATTTTGGAGAAAA+TGG | - | chr5.3:14171232-14171251 | MS.gene64898:CDS | 20.0% |
| !!! | TGGTTTCTATAATGTAATTT+TGG | - | chr5.3:14171223-14171242 | MS.gene64898:CDS | 20.0% |
| ! | AATTTAATCACATGGAGAAT+TGG | - | chr5.3:14170928-14170947 | MS.gene64898:CDS | 25.0% |
| ! | AGGAATTGAATTTAATCACA+TGG | - | chr5.3:14170920-14170939 | MS.gene64898:CDS | 25.0% |
| ! | GTGATTAAATTCAATTCCTA+CGG | + | chr5.3:14170919-14170938 | None:intergenic | 25.0% |
| ! | TGAAAAGGAGTTTAATCAAA+AGG | - | chr5.3:14171067-14171086 | MS.gene64898:CDS | 25.0% |
| ! | TTATGTCTAAAGAAGTTGTT+AGG | - | chr5.3:14170981-14171000 | MS.gene64898:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | - | chr5.3:14170314-14170333 | MS.gene64898:CDS | 25.0% |
| AGATAATCTAACATGGACAT+TGG | - | chr5.3:14171022-14171041 | MS.gene64898:CDS | 30.0% | |
| AGATTATCTGCAACCTTAAT+TGG | + | chr5.3:14171011-14171030 | None:intergenic | 30.0% | |
| AGTAACAAAGTTGTCAAAAG+AGG | - | chr5.3:14170366-14170385 | MS.gene64898:CDS | 30.0% | |
| GTAACAAAGTTGTCAAAAGA+GGG | - | chr5.3:14170367-14170386 | MS.gene64898:CDS | 30.0% | |
| GTTGTTAGGAAAACCAATTA+AGG | - | chr5.3:14170995-14171014 | MS.gene64898:CDS | 30.0% | |
| TCCAACAAAATACTAGTAGA+TGG | + | chr5.3:14170486-14170505 | None:intergenic | 30.0% | |
| TGTGAGCAAAAATATCACTT+TGG | - | chr5.3:14170882-14170901 | MS.gene64898:CDS | 30.0% | |
| ! | AAAGGAGAGTAAGTTGAATA+TGG | - | chr5.3:14171085-14171104 | MS.gene64898:CDS | 30.0% |
| ! | ACCATCTACTAGTATTTTGT+TGG | - | chr5.3:14170482-14170501 | MS.gene64898:CDS | 30.0% |
| ! | ACTAGTATTTTGTTGGAAGA+CGG | - | chr5.3:14170489-14170508 | MS.gene64898:CDS | 30.0% |
| ! | CATATTTTGCAACAACAAGT+TGG | + | chr5.3:14170795-14170814 | None:intergenic | 30.0% |
| ! | TCACATTCTTGTTTGCATTT+GGG | + | chr5.3:14170825-14170844 | None:intergenic | 30.0% |
| ! | TTCACATTCTTGTTTGCATT+TGG | + | chr5.3:14170826-14170845 | None:intergenic | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+AGG | - | chr5.3:14170321-14170340 | MS.gene64898:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCA+GGG | - | chr5.3:14170322-14170341 | MS.gene64898:CDS | 30.0% |
| AACACTTGGACAAGATCATT+TGG | - | chr5.3:14171440-14171459 | MS.gene64898:CDS | 35.0% | |
| ACAAGAATGTGAAGATCACA+AGG | - | chr5.3:14170833-14170852 | MS.gene64898:CDS | 35.0% | |
| AGGTTGCAGATAATCTAACA+TGG | - | chr5.3:14171015-14171034 | MS.gene64898:CDS | 35.0% | |
| ATATCACTTTGGATGCGTAA+AGG | - | chr5.3:14170893-14170912 | MS.gene64898:CDS | 35.0% | |
| ATCAACTCTCTTCCTGATAA+AGG | + | chr5.3:14171152-14171171 | None:intergenic | 35.0% | |
| CCTGATAAAGGATCAAAAGT+TGG | + | chr5.3:14171140-14171159 | None:intergenic | 35.0% | |
| GATAGTGTTTGTTCAGTTTG+TGG | - | chr5.3:14170672-14170691 | MS.gene64898:CDS | 35.0% | |
| GTGGCAACTATAAGGATTTA+TGG | - | chr5.3:14171269-14171288 | MS.gene64898:CDS | 35.0% | |
| TGATTTCAGTGGCAACTATA+AGG | - | chr5.3:14171261-14171280 | MS.gene64898:CDS | 35.0% | |
| ! | AGTAAGTTGAATATGGCTCT+TGG | - | chr5.3:14171092-14171111 | MS.gene64898:CDS | 35.0% |
| ! | CCAACTTTTGATCCTTTATC+AGG | - | chr5.3:14171137-14171156 | MS.gene64898:CDS | 35.0% |
| ! | GTTTGTTCAGTTTGTGGTTT+TGG | - | chr5.3:14170678-14170697 | MS.gene64898:CDS | 35.0% |
| !! | AAGCACTGAAAAGACCTATA+TGG | - | chr5.3:14171546-14171565 | MS.gene64898:CDS | 35.0% |
| !! | AGGAATGTGTCATTTGTTGA+TGG | - | chr5.3:14171346-14171365 | MS.gene64898:CDS | 35.0% |
| !! | TGGGAATAGTGTTGATGAAA+AGG | - | chr5.3:14171052-14171071 | MS.gene64898:CDS | 35.0% |
| !!! | CAAGATCATTTGGTTTTGCA+AGG | - | chr5.3:14171450-14171469 | MS.gene64898:CDS | 35.0% |
| !!! | CGTGTTACTTTTACTATCAC+CGG | - | chr5.3:14170426-14170445 | MS.gene64898:CDS | 35.0% |
| AATGGGTGAAGTGATTTCAG+TGG | - | chr5.3:14171250-14171269 | MS.gene64898:CDS | 40.0% | |
| ACATGGACATTGGTGAAGAA+TGG | - | chr5.3:14171032-14171051 | MS.gene64898:CDS | 40.0% | |
| ACTACCCTGACAGAAAACAT+TGG | + | chr5.3:14170349-14170368 | None:intergenic | 40.0% | |
| ATTACTTCTGCATTCCTCAG+AGG | - | chr5.3:14171409-14171428 | MS.gene64898:CDS | 40.0% | |
| CATGGACATTGGTGAAGAAT+GGG | - | chr5.3:14171033-14171052 | MS.gene64898:CDS | 40.0% | |
| CTCGATTGAGACCTAAACAA+CGG | + | chr5.3:14170749-14170768 | None:intergenic | 40.0% | |
| GAGAAACAGTTAACTCGCTT+AGG | - | chr5.3:14171377-14171396 | MS.gene64898:CDS | 40.0% | |
| GTCGTTGTTGGATTGTCAAA+GGG | - | chr5.3:14170515-14170534 | MS.gene64898:CDS | 40.0% | |
| TGGGTTCGCATGATCATATA+GGG | - | chr5.3:14170544-14170563 | MS.gene64898:CDS | 40.0% | |
| TTGTCTTCGATACTGTTCCT+TGG | + | chr5.3:14171327-14171346 | None:intergenic | 40.0% | |
| ! | AAGGAACAGTATCGAAGACA+AGG | - | chr5.3:14171326-14171345 | MS.gene64898:CDS | 40.0% |
| ! | AGTTGCAGAGATAGTTTTCG+TGG | - | chr5.3:14171298-14171317 | MS.gene64898:CDS | 40.0% |
| ! | GCTCTTGGTGTATTGTATGA+GGG | - | chr5.3:14171107-14171126 | MS.gene64898:CDS | 40.0% |
| ! | GTATTTTGTTGGAAGACGGA+AGG | - | chr5.3:14170493-14170512 | MS.gene64898:CDS | 40.0% |
| !! | GGTTTTGCAGTGTAGTTTGT+GGG | - | chr5.3:14170949-14170968 | MS.gene64898:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+TGG | - | chr5.3:14170948-14170967 | MS.gene64898:CDS | 40.0% |
| !! | TTTCAGTGCTTTGAGACACA+TGG | + | chr5.3:14171537-14171556 | None:intergenic | 40.0% |
| !!! | TGTTCAGTTTGTGGTTTTGG+AGG | - | chr5.3:14170681-14170700 | MS.gene64898:CDS | 40.0% |
| AGTGTTCATAGCATCCTCTG+AGG | + | chr5.3:14171426-14171445 | None:intergenic | 45.0% | |
| CAAGCAATGCAAGGCCATAT+AGG | + | chr5.3:14171563-14171582 | None:intergenic | 45.0% | |
| CAGAGGATGCTATGAACACT+TGG | - | chr5.3:14171426-14171445 | MS.gene64898:CDS | 45.0% | |
| CTGGGTTCGCATGATCATAT+AGG | - | chr5.3:14170543-14170562 | MS.gene64898:CDS | 45.0% | |
| GATTGAGACCTAAACAACGG+AGG | + | chr5.3:14170746-14170765 | None:intergenic | 45.0% | |
| GATTGTCAAAGGGAAGCTCT+GGG | - | chr5.3:14170525-14170544 | MS.gene64898:CDS | 45.0% | |
| GGACAAAACCATTCACCAAG+CGG | + | chr5.3:14170774-14170793 | None:intergenic | 45.0% | |
| GGTCGTTGTTGGATTGTCAA+AGG | - | chr5.3:14170514-14170533 | MS.gene64898:CDS | 45.0% | |
| TCTTCGATACTGTTCCTTGG+TGG | + | chr5.3:14171324-14171343 | None:intergenic | 45.0% | |
| ! | AGGGACCAATGTTTTCTGTC+AGG | - | chr5.3:14170341-14170360 | MS.gene64898:CDS | 45.0% |
| ! | GGCTCTTGGTGTATTGTATG+AGG | - | chr5.3:14171106-14171125 | MS.gene64898:CDS | 45.0% |
| ! | GGGACCAATGTTTTCTGTCA+GGG | - | chr5.3:14170342-14170361 | MS.gene64898:CDS | 45.0% |
| !!! | TTGTGGTTTTGGAGGTGACT+TGG | - | chr5.3:14170689-14170708 | MS.gene64898:CDS | 45.0% |
| CAAGCTCGCTTGAACTTTCG+TGG | - | chr5.3:14171203-14171222 | MS.gene64898:CDS | 50.0% | |
| GCATTCCACCTCCGTTGTTT+AGG | - | chr5.3:14170735-14170754 | MS.gene64898:CDS | 50.0% | |
| GGATTGTCAAAGGGAAGCTC+TGG | - | chr5.3:14170524-14170543 | MS.gene64898:CDS | 50.0% | |
| TGAGACCTAAACAACGGAGG+TGG | + | chr5.3:14170743-14170762 | None:intergenic | 50.0% | |
| TTTGGATGCGTAAAGGCCGT+AGG | - | chr5.3:14170900-14170919 | MS.gene64898:CDS | 50.0% | |
| ! | ATCGAGTTCCGCTTGGTGAA+TGG | - | chr5.3:14170763-14170782 | MS.gene64898:CDS | 50.0% |
| ! | GATAGTTTTCGTGGCCACCA+AGG | - | chr5.3:14171307-14171326 | MS.gene64898:CDS | 50.0% |
| CAACGGAGGTGGAATGCAGA+AGG | + | chr5.3:14170732-14170751 | None:intergenic | 55.0% | |
| GGAAGACGGAAGGTCGTTGT+TGG | - | chr5.3:14170503-14170522 | MS.gene64898:CDS | 55.0% | |
| GGTCTCAATCGAGTTCCGCT+TGG | - | chr5.3:14170756-14170775 | MS.gene64898:CDS | 55.0% | |
| ACCCGCATGAGACTCGAAGC+CGG | + | chr5.3:14170448-14170467 | None:intergenic | 60.0% | |
| ! | ACCGGCTTCGAGTCTCATGC+GGG | - | chr5.3:14170444-14170463 | MS.gene64898:CDS | 60.0% |
| !! | CACCGGCTTCGAGTCTCATG+CGG | - | chr5.3:14170443-14170462 | MS.gene64898:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14170297 | 14171583 | 14170297 | ID=MS.gene64898 |
| chr5.3 | mRNA | 14170297 | 14171583 | 14170297 | ID=MS.gene64898.t1;Parent=MS.gene64898 |
| chr5.3 | exon | 14170297 | 14171583 | 14170297 | ID=MS.gene64898.t1.exon1;Parent=MS.gene64898.t1 |
| chr5.3 | CDS | 14170297 | 14171583 | 14170297 | ID=cds.MS.gene64898.t1;Parent=MS.gene64898.t1 |
| Gene Sequence |
| Protein sequence |
