Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64900.t1 | XP_003612379.1 | 50.7 | 428 | 78 | 4 | 1 | 295 | 1 | 428 | 7.30E-96 | 360.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64900.t1 | F4IXE7 | 38.8 | 85 | 52 | 0 | 202 | 286 | 939 | 1023 | 9.8e-09 | 62.4 |
| MS.gene64900.t1 | F4IXE7 | 30.5 | 82 | 55 | 1 | 3 | 82 | 621 | 702 | 4.6e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64900.t1 | G7K198 | 50.7 | 428 | 78 | 4 | 1 | 295 | 1 | 428 | 5.2e-96 | 360.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64900.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64900.t1 | MTR_5g024390 | 93.750 | 128 | 8 | 0 | 1 | 128 | 1 | 128 | 3.39e-78 | 244 |
| MS.gene64900.t1 | MTR_5g024390 | 56.219 | 201 | 19 | 2 | 164 | 295 | 228 | 428 | 1.01e-62 | 204 |
| MS.gene64900.t1 | MTR_5g024500 | 92.188 | 128 | 10 | 0 | 1 | 128 | 1 | 128 | 1.54e-76 | 239 |
| MS.gene64900.t1 | MTR_5g024500 | 54.726 | 201 | 22 | 2 | 164 | 295 | 228 | 428 | 1.71e-60 | 198 |
| MS.gene64900.t1 | MTR_3g103110 | 55.696 | 158 | 38 | 2 | 3 | 128 | 339 | 496 | 2.14e-48 | 172 |
| MS.gene64900.t1 | MTR_3g103110 | 71.717 | 99 | 27 | 1 | 197 | 295 | 703 | 800 | 3.03e-44 | 160 |
| MS.gene64900.t1 | MTR_7g109640 | 73.737 | 99 | 25 | 1 | 197 | 295 | 699 | 796 | 2.20e-42 | 155 |
| MS.gene64900.t1 | MTR_7g109640 | 67.308 | 104 | 31 | 1 | 3 | 106 | 384 | 484 | 2.55e-41 | 152 |
| MS.gene64900.t1 | MTR_3g103120 | 68.421 | 95 | 30 | 0 | 201 | 295 | 747 | 841 | 1.53e-39 | 147 |
| MS.gene64900.t1 | MTR_3g103120 | 61.905 | 105 | 40 | 0 | 2 | 106 | 425 | 529 | 7.20e-39 | 145 |
| MS.gene64900.t1 | MTR_3g103160 | 56.522 | 92 | 39 | 1 | 197 | 288 | 348 | 438 | 8.15e-29 | 114 |
| MS.gene64900.t1 | MTR_3g103160 | 38.931 | 131 | 50 | 3 | 2 | 130 | 107 | 209 | 8.58e-15 | 74.7 |
| MS.gene64900.t1 | MTR_5g071340 | 50.000 | 92 | 45 | 1 | 197 | 288 | 996 | 1086 | 1.03e-23 | 101 |
| MS.gene64900.t1 | MTR_5g071340 | 34.454 | 119 | 67 | 3 | 3 | 117 | 679 | 790 | 1.44e-13 | 71.6 |
| MS.gene64900.t1 | MTR_3g464550 | 48.837 | 86 | 44 | 0 | 201 | 286 | 923 | 1008 | 7.25e-23 | 99.0 |
| MS.gene64900.t1 | MTR_3g464550 | 34.167 | 120 | 69 | 3 | 1 | 117 | 601 | 713 | 2.92e-13 | 70.5 |
| MS.gene64900.t1 | MTR_2g078040 | 35.294 | 85 | 55 | 0 | 202 | 286 | 1082 | 1166 | 5.68e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64900.t1 | AT5G63900 | 43.820 | 89 | 50 | 0 | 200 | 288 | 454 | 542 | 2.69e-20 | 91.3 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 691 | 777 | 7.49e-17 | 81.3 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 368 | 449 | 3.63e-14 | 73.2 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 922 | 1008 | 8.46e-17 | 81.3 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 599 | 680 | 5.24e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 922 | 1008 | 8.46e-17 | 81.3 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 599 | 680 | 5.24e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 913 | 999 | 9.17e-17 | 81.3 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 590 | 671 | 5.28e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 922 | 1008 | 9.61e-17 | 80.9 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 599 | 680 | 4.31e-14 | 73.2 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 913 | 999 | 9.96e-17 | 80.9 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 590 | 671 | 5.03e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 887 | 973 | 1.02e-16 | 80.9 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 590 | 671 | 5.35e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 42.529 | 87 | 50 | 0 | 200 | 286 | 887 | 973 | 1.04e-16 | 80.9 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 590 | 671 | 5.01e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 599 | 680 | 4.67e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 590 | 671 | 5.04e-14 | 72.8 |
| MS.gene64900.t1 | AT5G58610 | 46.341 | 82 | 42 | 1 | 3 | 82 | 590 | 671 | 5.34e-14 | 72.8 |
| MS.gene64900.t1 | AT5G36740 | 40.698 | 86 | 51 | 0 | 201 | 286 | 864 | 949 | 1.01e-13 | 72.0 |
| MS.gene64900.t1 | AT5G36740 | 40.698 | 86 | 51 | 0 | 201 | 286 | 864 | 949 | 1.01e-13 | 72.0 |
| MS.gene64900.t1 | AT5G36740 | 40.698 | 86 | 51 | 0 | 201 | 286 | 721 | 806 | 1.09e-13 | 72.0 |
| MS.gene64900.t1 | AT3G14980 | 37.363 | 91 | 57 | 0 | 202 | 292 | 939 | 1029 | 1.56e-11 | 65.5 |
| MS.gene64900.t1 | AT3G14980 | 37.363 | 91 | 57 | 0 | 202 | 292 | 939 | 1029 | 1.56e-11 | 65.5 |
| MS.gene64900.t1 | AT3G14980 | 37.363 | 91 | 57 | 0 | 202 | 292 | 939 | 1029 | 1.56e-11 | 65.5 |
| MS.gene64900.t1 | AT3G14980 | 37.363 | 91 | 57 | 0 | 202 | 292 | 894 | 984 | 1.58e-11 | 65.5 |
| MS.gene64900.t1 | AT3G14980 | 37.363 | 91 | 57 | 0 | 202 | 292 | 939 | 1029 | 1.80e-11 | 65.1 |
| MS.gene64900.t1 | AT1G05380 | 35.556 | 90 | 58 | 0 | 197 | 286 | 836 | 925 | 3.49e-11 | 64.3 |
| MS.gene64900.t1 | AT1G05380 | 35.556 | 90 | 58 | 0 | 197 | 286 | 836 | 925 | 3.49e-11 | 64.3 |
| MS.gene64900.t1 | AT1G05380 | 35.556 | 90 | 58 | 0 | 197 | 286 | 836 | 925 | 3.49e-11 | 64.3 |
Find 44 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTATCTGCAACCTTAAT+TGG | 0.181951 | 5.3:-14190539 | None:intergenic |
| TTCACATTCTTGTTTGCATT+TGG | 0.183779 | 5.3:-14190467 | None:intergenic |
| GTTAATAAAGAATCAAGTTT+TGG | 0.295706 | 5.3:+14189958 | MS.gene64900:CDS |
| TCACATTCTTGTTTGCATTT+GGG | 0.312904 | 5.3:-14190466 | None:intergenic |
| TTATGTCTAAAGAAGTTGTT+AGG | 0.333993 | 5.3:+14190512 | MS.gene64900:CDS |
| GAACGATGGGTATTGTTTCT+TGG | 0.374323 | 5.3:+14189936 | None:intergenic |
| CTGGGTTCGCATGATCATAT+AGG | 0.387880 | 5.3:+14190187 | MS.gene64900:CDS |
| GGATTGTCAAAGGGAAGCTC+TGG | 0.400874 | 5.3:+14190168 | MS.gene64900:CDS |
| AACACTTGGACAAGATCATT+TGG | 0.403595 | 5.3:+14190977 | MS.gene64900:CDS |
| TGAAGAGGAGTTTAATCAAA+AGG | 0.404213 | 5.3:+14190598 | MS.gene64900:CDS |
| AAGCACTGAAAAGACCTATA+TGG | 0.410177 | 5.3:+14191083 | MS.gene64900:CDS |
| ACCATCCACAAGTATCTTGT+TGG | 0.424383 | 5.3:+14190126 | MS.gene64900:CDS |
| GTTGTTAGGAAAACCAATTA+AGG | 0.435095 | 5.3:+14190526 | MS.gene64900:CDS |
| ATCGAGTTCCGCTTGGTGAA+TGG | 0.464422 | 5.3:+14190407 | MS.gene64900:CDS |
| CAAGCAATGCAAGGCCATAT+AGG | 0.465235 | 5.3:-14191097 | None:intergenic |
| ACAAGTATCTTGTTGGAAGA+TGG | 0.480189 | 5.3:+14190133 | MS.gene64900:CDS |
| TTGTCTTCGATACTGTTCCT+TGG | 0.482098 | 5.3:-14190861 | None:intergenic |
| GGAAGATGGAAGGTCGTTGT+TGG | 0.488980 | 5.3:+14190147 | MS.gene64900:CDS |
| TGGGTTCGCATGATCATATA+GGG | 0.493127 | 5.3:+14190188 | MS.gene64900:CDS |
| GAGAAACAGTTAACTCGCTT+AGG | 0.495020 | 5.3:+14190914 | MS.gene64900:CDS |
| AGGAATGTGTCATTTGTTGA+TGG | 0.496868 | 5.3:+14190883 | MS.gene64900:CDS |
| CAGAGGATGCTATGAACACT+TGG | 0.500216 | 5.3:+14190963 | MS.gene64900:CDS |
| GTCGTTGTTGGATTGTCAAA+GGG | 0.517227 | 5.3:+14190159 | MS.gene64900:CDS |
| TCTTCGATACTGTTCCTTGG+TGG | 0.524421 | 5.3:-14190858 | None:intergenic |
| GGTCGTTGTTGGATTGTCAA+AGG | 0.528790 | 5.3:+14190158 | MS.gene64900:CDS |
| AGCAACAAAGTTGTCAAAAG+AGG | 0.543182 | 5.3:+14190010 | MS.gene64900:CDS |
| CACCGGGTTTGAGTCTCATG+CGG | 0.547073 | 5.3:+14190087 | MS.gene64900:CDS |
| ATCTTCCAACAAGATACTTG+TGG | 0.550941 | 5.3:-14190131 | None:intergenic |
| GGTCTCAATCGAGTTCCGCT+TGG | 0.551276 | 5.3:+14190400 | MS.gene64900:intron |
| ACCGGGTTTGAGTCTCATGC+GGG | 0.553599 | 5.3:+14190088 | MS.gene64900:CDS |
| TGTGAATAGTGTTGATGAAG+AGG | 0.557314 | 5.3:+14190583 | MS.gene64900:CDS |
| GATTGTCAAAGGGAAGCTCT+GGG | 0.597706 | 5.3:+14190169 | MS.gene64900:CDS |
| TTTCAGTGCTTTGAGACACA+TGG | 0.604056 | 5.3:-14191071 | None:intergenic |
| AGATAATCTAACATGGACAT+TGG | 0.607457 | 5.3:+14190553 | MS.gene64900:CDS |
| CTCCAACATCAAGCAATGCA+AGG | 0.609626 | 5.3:-14191106 | None:intergenic |
| TCCAACAAGATACTTGTGGA+TGG | 0.616702 | 5.3:-14190127 | None:intergenic |
| GTATCTTGTTGGAAGATGGA+AGG | 0.629827 | 5.3:+14190137 | MS.gene64900:CDS |
| ATTACTTCTGCATTCCTCAG+AGG | 0.633654 | 5.3:+14190946 | MS.gene64900:CDS |
| ACAAGAATGTGAAGATCACA+AGG | 0.637763 | 5.3:+14190477 | MS.gene64900:CDS |
| AGGTTGCAGATAATCTAACA+TGG | 0.665981 | 5.3:+14190546 | MS.gene64900:CDS |
| GGACAAAACCATTCACCAAG+CGG | 0.675521 | 5.3:-14190415 | None:intergenic |
| AAGGAACAGTATCGAAGACA+AGG | 0.678537 | 5.3:+14190863 | MS.gene64900:CDS |
| ACCCGCATGAGACTCAAACC+CGG | 0.691985 | 5.3:-14190089 | None:intergenic |
| AGTGTTCATAGCATCCTCTG+AGG | 0.736105 | 5.3:-14190960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTAGAATTTGAGAA+TGG | + | chr5.3:14191046-14191065 | MS.gene64900:CDS | 20.0% |
| !!! | CTAATTCTATAATGTGATTT+TGG | + | chr5.3:14190760-14190779 | MS.gene64900:intron | 20.0% |
| !!! | GTTAATAAAGAATCAAGTTT+TGG | + | chr5.3:14189958-14189977 | MS.gene64900:CDS | 20.0% |
| ! | CATTATAGAATTAGAAACCA+CGG | - | chr5.3:14190754-14190773 | None:intergenic | 25.0% |
| ! | TTATGTCTAAAGAAGTTGTT+AGG | + | chr5.3:14190512-14190531 | MS.gene64900:CDS | 25.0% |
| !!! | AATGTGATTTTGGAGAAAAT+GGG | + | chr5.3:14190770-14190789 | MS.gene64900:intron | 25.0% |
| !!! | TAATGTGATTTTGGAGAAAA+TGG | + | chr5.3:14190769-14190788 | MS.gene64900:intron | 25.0% |
| AGATAATCTAACATGGACAT+TGG | + | chr5.3:14190553-14190572 | MS.gene64900:CDS | 30.0% | |
| AGATTATCTGCAACCTTAAT+TGG | - | chr5.3:14190542-14190561 | None:intergenic | 30.0% | |
| GTTGTTAGGAAAACCAATTA+AGG | + | chr5.3:14190526-14190545 | MS.gene64900:CDS | 30.0% | |
| TGAAGAGGAGTTTAATCAAA+AGG | + | chr5.3:14190598-14190617 | MS.gene64900:CDS | 30.0% | |
| ! | AAAGGAGAGTAAGTTGAATA+TGG | + | chr5.3:14190616-14190635 | MS.gene64900:intron | 30.0% |
| ! | CATATTTTGCAACAACAAGT+TGG | - | chr5.3:14190439-14190458 | None:intergenic | 30.0% |
| ! | TCACATTCTTGTTTGCATTT+GGG | - | chr5.3:14190469-14190488 | None:intergenic | 30.0% |
| ! | TTCACATTCTTGTTTGCATT+TGG | - | chr5.3:14190470-14190489 | None:intergenic | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+AGG | + | chr5.3:14189965-14189984 | MS.gene64900:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCA+GGG | + | chr5.3:14189966-14189985 | MS.gene64900:CDS | 30.0% |
| AACACTTGGACAAGATCATT+TGG | + | chr5.3:14190977-14190996 | MS.gene64900:CDS | 35.0% | |
| ACAAGAATGTGAAGATCACA+AGG | + | chr5.3:14190477-14190496 | MS.gene64900:CDS | 35.0% | |
| ACAAGTATCTTGTTGGAAGA+TGG | + | chr5.3:14190133-14190152 | MS.gene64900:CDS | 35.0% | |
| AGCAACAAAGTTGTCAAAAG+AGG | + | chr5.3:14190010-14190029 | MS.gene64900:CDS | 35.0% | |
| AGGTTGCAGATAATCTAACA+TGG | + | chr5.3:14190546-14190565 | MS.gene64900:CDS | 35.0% | |
| ATCAACTCTCTTCCTGATAA+AGG | - | chr5.3:14190683-14190702 | None:intergenic | 35.0% | |
| ATCTTCCAACAAGATACTTG+TGG | - | chr5.3:14190134-14190153 | None:intergenic | 35.0% | |
| CCTGATAAAGGATCAAAAGT+TGG | - | chr5.3:14190671-14190690 | None:intergenic | 35.0% | |
| GATAGTGTTTGTTCAGTTTG+TGG | + | chr5.3:14190316-14190335 | MS.gene64900:intron | 35.0% | |
| GTGGCAACTATAAGGATTTA+TGG | + | chr5.3:14190806-14190825 | MS.gene64900:intron | 35.0% | |
| TGATTTCAGTGGCAACTATA+AGG | + | chr5.3:14190798-14190817 | MS.gene64900:intron | 35.0% | |
| ! | AGTAAGTTGAATATGGCTCT+TGG | + | chr5.3:14190623-14190642 | MS.gene64900:intron | 35.0% |
| ! | CCAACTTTTGATCCTTTATC+AGG | + | chr5.3:14190668-14190687 | MS.gene64900:intron | 35.0% |
| ! | GTTTGTTCAGTTTGTGGTTT+TGG | + | chr5.3:14190322-14190341 | MS.gene64900:intron | 35.0% |
| !! | AAGCACTGAAAAGACCTATA+TGG | + | chr5.3:14191083-14191102 | MS.gene64900:CDS | 35.0% |
| !! | AGGAATGTGTCATTTGTTGA+TGG | + | chr5.3:14190883-14190902 | MS.gene64900:CDS | 35.0% |
| !! | TGTGAATAGTGTTGATGAAG+AGG | + | chr5.3:14190583-14190602 | MS.gene64900:CDS | 35.0% |
| !!! | CAAGATCATTTGGTTTTGCA+AGG | + | chr5.3:14190987-14191006 | MS.gene64900:CDS | 35.0% |
| !!! | CGTGTTACTTTTACTATCAC+CGG | + | chr5.3:14190070-14190089 | MS.gene64900:CDS | 35.0% |
| !!! | GTGTTACTTTTACTATCACC+GGG | + | chr5.3:14190071-14190090 | MS.gene64900:CDS | 35.0% |
| AATGGGTGAAGTGATTTCAG+TGG | + | chr5.3:14190787-14190806 | MS.gene64900:intron | 40.0% | |
| ACCATCCACAAGTATCTTGT+TGG | + | chr5.3:14190126-14190145 | MS.gene64900:CDS | 40.0% | |
| ATTACTTCTGCATTCCTCAG+AGG | + | chr5.3:14190946-14190965 | MS.gene64900:CDS | 40.0% | |
| CAAAAACGCTTAAACTTCCG+TGG | + | chr5.3:14190734-14190753 | MS.gene64900:intron | 40.0% | |
| CTCGATTGAGACCTAAACAA+CGG | - | chr5.3:14190393-14190412 | None:intergenic | 40.0% | |
| GAGAAACAGTTAACTCGCTT+AGG | + | chr5.3:14190914-14190933 | MS.gene64900:CDS | 40.0% | |
| GTATCTTGTTGGAAGATGGA+AGG | + | chr5.3:14190137-14190156 | MS.gene64900:CDS | 40.0% | |
| GTCGTTGTTGGATTGTCAAA+GGG | + | chr5.3:14190159-14190178 | MS.gene64900:CDS | 40.0% | |
| TCCAACAAGATACTTGTGGA+TGG | - | chr5.3:14190130-14190149 | None:intergenic | 40.0% | |
| TGGGTTCGCATGATCATATA+GGG | + | chr5.3:14190188-14190207 | MS.gene64900:CDS | 40.0% | |
| TTGTCTTCGATACTGTTCCT+TGG | - | chr5.3:14190864-14190883 | None:intergenic | 40.0% | |
| ! | AAGGAACAGTATCGAAGACA+AGG | + | chr5.3:14190863-14190882 | MS.gene64900:CDS | 40.0% |
| ! | AGGGACTAATGTTTTCTGTC+AGG | + | chr5.3:14189985-14190004 | MS.gene64900:CDS | 40.0% |
| ! | AGTTGCAGAGATAGTTTTCG+TGG | + | chr5.3:14190835-14190854 | MS.gene64900:intron | 40.0% |
| ! | GCTCTTGGTGTATTGTATGA+GGG | + | chr5.3:14190638-14190657 | MS.gene64900:intron | 40.0% |
| ! | GGGACTAATGTTTTCTGTCA+GGG | + | chr5.3:14189986-14190005 | MS.gene64900:CDS | 40.0% |
| !! | TTTCAGTGCTTTGAGACACA+TGG | - | chr5.3:14191074-14191093 | None:intergenic | 40.0% |
| !!! | TGTTCAGTTTGTGGTTTTGG+AGG | + | chr5.3:14190325-14190344 | MS.gene64900:intron | 40.0% |
| AGTGTTCATAGCATCCTCTG+AGG | - | chr5.3:14190963-14190982 | None:intergenic | 45.0% | |
| CAAGCAATGCAAGGCCATAT+AGG | - | chr5.3:14191100-14191119 | None:intergenic | 45.0% | |
| CAGAGGATGCTATGAACACT+TGG | + | chr5.3:14190963-14190982 | MS.gene64900:CDS | 45.0% | |
| CTGGGTTCGCATGATCATAT+AGG | + | chr5.3:14190187-14190206 | MS.gene64900:CDS | 45.0% | |
| GATTGAGACCTAAACAACGG+AGG | - | chr5.3:14190390-14190409 | None:intergenic | 45.0% | |
| GATTGTCAAAGGGAAGCTCT+GGG | + | chr5.3:14190169-14190188 | MS.gene64900:CDS | 45.0% | |
| GGACAAAACCATTCACCAAG+CGG | - | chr5.3:14190418-14190437 | None:intergenic | 45.0% | |
| GGTCGTTGTTGGATTGTCAA+AGG | + | chr5.3:14190158-14190177 | MS.gene64900:CDS | 45.0% | |
| TCTTCGATACTGTTCCTTGG+TGG | - | chr5.3:14190861-14190880 | None:intergenic | 45.0% | |
| ! | GGCTCTTGGTGTATTGTATG+AGG | + | chr5.3:14190637-14190656 | MS.gene64900:intron | 45.0% |
| !!! | TTGTGGTTTTGGAGGTGACT+TGG | + | chr5.3:14190333-14190352 | MS.gene64900:intron | 45.0% |
| GCATTCCACCTCCGTTGTTT+AGG | + | chr5.3:14190379-14190398 | MS.gene64900:intron | 50.0% | |
| GGAAGATGGAAGGTCGTTGT+TGG | + | chr5.3:14190147-14190166 | MS.gene64900:CDS | 50.0% | |
| GGATTGTCAAAGGGAAGCTC+TGG | + | chr5.3:14190168-14190187 | MS.gene64900:CDS | 50.0% | |
| TGAGACCTAAACAACGGAGG+TGG | - | chr5.3:14190387-14190406 | None:intergenic | 50.0% | |
| ! | ATCGAGTTCCGCTTGGTGAA+TGG | + | chr5.3:14190407-14190426 | MS.gene64900:CDS | 50.0% |
| ! | GATAGTTTTCGTGGCCACCA+AGG | + | chr5.3:14190844-14190863 | MS.gene64900:CDS | 50.0% |
| ACCCGCATGAGACTCAAACC+CGG | - | chr5.3:14190092-14190111 | None:intergenic | 55.0% | |
| ACCGGGTTTGAGTCTCATGC+GGG | + | chr5.3:14190088-14190107 | MS.gene64900:CDS | 55.0% | |
| CAACGGAGGTGGAATGCAGA+AGG | - | chr5.3:14190376-14190395 | None:intergenic | 55.0% | |
| CACCGGGTTTGAGTCTCATG+CGG | + | chr5.3:14190087-14190106 | MS.gene64900:CDS | 55.0% | |
| GGTCTCAATCGAGTTCCGCT+TGG | + | chr5.3:14190400-14190419 | MS.gene64900:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14189941 | 14191120 | 14189941 | ID=MS.gene64900 |
| chr5.3 | mRNA | 14189941 | 14191120 | 14189941 | ID=MS.gene64900.t1;Parent=MS.gene64900 |
| chr5.3 | exon | 14189941 | 14190321 | 14189941 | ID=MS.gene64900.t1.exon1;Parent=MS.gene64900.t1 |
| chr5.3 | CDS | 14189941 | 14190321 | 14189941 | ID=cds.MS.gene64900.t1;Parent=MS.gene64900.t1 |
| chr5.3 | exon | 14190401 | 14190623 | 14190401 | ID=MS.gene64900.t1.exon2;Parent=MS.gene64900.t1 |
| chr5.3 | CDS | 14190401 | 14190623 | 14190401 | ID=cds.MS.gene64900.t1;Parent=MS.gene64900.t1 |
| chr5.3 | exon | 14190837 | 14191120 | 14190837 | ID=MS.gene64900.t1.exon3;Parent=MS.gene64900.t1 |
| chr5.3 | CDS | 14190837 | 14191120 | 14190837 | ID=cds.MS.gene64900.t1;Parent=MS.gene64900.t1 |
| Gene Sequence |
| Protein sequence |
