Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64901.t1 | XP_003612390.1 | 95.3 | 902 | 24 | 1 | 23 | 924 | 21 | 904 | 0.00E+00 | 1690.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64901.t1 | Q9C5S2 | 62.3 | 506 | 157 | 5 | 430 | 921 | 352 | 837 | 3.2e-175 | 617.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64901.t1 | G7K1A9 | 95.3 | 902 | 24 | 1 | 23 | 924 | 21 | 904 | 0.0e+00 | 1690.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64901.t1 | MTR_5g024510 | 95.455 | 902 | 23 | 1 | 23 | 924 | 21 | 904 | 0.0 | 1771 |
| MS.gene64901.t1 | MTR_5g024510 | 95.346 | 795 | 19 | 1 | 130 | 924 | 6 | 782 | 0.0 | 1559 |
| MS.gene64901.t1 | MTR_5g024510 | 94.828 | 754 | 21 | 1 | 23 | 776 | 21 | 756 | 0.0 | 1464 |
| MS.gene64901.t1 | MTR_8g073190 | 55.978 | 895 | 286 | 16 | 51 | 920 | 33 | 844 | 0.0 | 920 |
| MS.gene64901.t1 | MTR_8g072590 | 39.418 | 756 | 302 | 23 | 67 | 809 | 36 | 648 | 7.31e-145 | 445 |
| MS.gene64901.t1 | MTR_6g065690 | 63.248 | 117 | 5 | 2 | 352 | 468 | 1 | 79 | 1.37e-34 | 129 |
| MS.gene64901.t1 | MTR_7g113490 | 27.465 | 284 | 141 | 11 | 510 | 787 | 106 | 330 | 6.92e-15 | 79.3 |
| MS.gene64901.t1 | MTR_1g105290 | 24.476 | 286 | 151 | 9 | 509 | 788 | 92 | 318 | 5.08e-14 | 76.6 |
| MS.gene64901.t1 | MTR_1g105290 | 24.476 | 286 | 151 | 9 | 509 | 788 | 92 | 318 | 5.11e-14 | 76.6 |
| MS.gene64901.t1 | MTR_1g105290 | 24.476 | 286 | 151 | 9 | 509 | 788 | 92 | 318 | 7.94e-14 | 75.5 |
| MS.gene64901.t1 | MTR_8g093730 | 27.273 | 286 | 139 | 12 | 523 | 802 | 347 | 569 | 1.58e-12 | 72.0 |
| MS.gene64901.t1 | MTR_4g107280 | 31.707 | 164 | 76 | 7 | 619 | 776 | 202 | 335 | 3.47e-11 | 67.0 |
| MS.gene64901.t1 | MTR_4g107280 | 31.707 | 164 | 76 | 7 | 619 | 776 | 163 | 296 | 3.59e-11 | 66.6 |
| MS.gene64901.t1 | MTR_4g080030 | 23.368 | 291 | 158 | 9 | 499 | 783 | 561 | 792 | 8.94e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64901.t1 | AT2G17520 | 65.227 | 463 | 130 | 4 | 470 | 921 | 395 | 837 | 0.0 | 622 |
| MS.gene64901.t1 | AT5G24360 | 43.709 | 906 | 402 | 28 | 57 | 919 | 35 | 875 | 0.0 | 613 |
| MS.gene64901.t1 | AT5G24360 | 43.590 | 897 | 401 | 26 | 63 | 919 | 50 | 881 | 0.0 | 609 |
| MS.gene64901.t1 | AT5G24360 | 43.722 | 892 | 397 | 26 | 68 | 919 | 35 | 861 | 0.0 | 608 |
| MS.gene64901.t1 | AT3G11870 | 40.552 | 471 | 212 | 14 | 482 | 920 | 119 | 553 | 4.78e-91 | 300 |
| MS.gene64901.t1 | AT1G54960 | 24.165 | 389 | 193 | 16 | 490 | 861 | 74 | 377 | 3.71e-15 | 80.5 |
| MS.gene64901.t1 | AT1G54960 | 24.165 | 389 | 193 | 16 | 490 | 861 | 74 | 377 | 3.71e-15 | 80.5 |
| MS.gene64901.t1 | AT1G09000 | 25.714 | 315 | 158 | 12 | 490 | 787 | 75 | 330 | 1.18e-14 | 79.0 |
| MS.gene64901.t1 | AT1G09000 | 25.714 | 315 | 158 | 12 | 490 | 787 | 75 | 330 | 1.33e-14 | 78.6 |
| MS.gene64901.t1 | AT3G59410 | 26.140 | 329 | 213 | 13 | 488 | 799 | 429 | 744 | 1.06e-12 | 72.8 |
| MS.gene64901.t1 | AT3G59410 | 26.140 | 329 | 213 | 13 | 488 | 799 | 430 | 745 | 1.19e-12 | 72.8 |
| MS.gene64901.t1 | AT3G59410 | 26.140 | 329 | 213 | 13 | 488 | 799 | 453 | 768 | 1.24e-12 | 72.8 |
| MS.gene64901.t1 | AT3G59410 | 26.140 | 329 | 213 | 13 | 488 | 799 | 429 | 744 | 1.24e-12 | 72.8 |
| MS.gene64901.t1 | AT3G59410 | 26.140 | 329 | 213 | 13 | 488 | 799 | 429 | 744 | 1.24e-12 | 72.8 |
| MS.gene64901.t1 | AT1G61950 | 24.308 | 325 | 163 | 13 | 486 | 792 | 100 | 359 | 5.52e-11 | 66.6 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCATCATCCTCTATTT+TGG | 0.157470 | 5.3:-14193050 | MS.gene64901:CDS |
| CATCCTTCTGTGCCTCTATT+TGG | 0.161498 | 5.3:+14198871 | None:intergenic |
| CCATACCATCGAACAATATT+TGG | 0.183296 | 5.3:+14199035 | None:intergenic |
| ACTAACAGGGATGTGGTTTC+TGG | 0.184634 | 5.3:-14198029 | MS.gene64901:intron |
| ATGTGCCAAACTTTCTGATA+TGG | 0.210133 | 5.3:-14194741 | MS.gene64901:CDS |
| TATCTTGTTGAAAGTGCTTC+TGG | 0.224454 | 5.3:-14201225 | MS.gene64901:CDS |
| CACTGGCTTTAGGTGCAAAA+TGG | 0.234573 | 5.3:-14192921 | MS.gene64901:CDS |
| CAAGAAGAAACCTGAATTTC+TGG | 0.245839 | 5.3:+14192775 | None:intergenic |
| TGAATTGTCAATGTCATTAT+TGG | 0.250222 | 5.3:-14199453 | MS.gene64901:CDS |
| AGCGCCAGAGCAGCTTCTTC+AGG | 0.253007 | 5.3:-14194293 | MS.gene64901:CDS |
| CAATCTGTGGGTTCTGGTTC+AGG | 0.254138 | 5.3:-14199950 | MS.gene64901:CDS |
| TTGCCAACATTGGTCGTTAC+AGG | 0.255444 | 5.3:-14192873 | MS.gene64901:CDS |
| AGTCAGAAGCAATGAGGTTT+TGG | 0.260881 | 5.3:+14199063 | None:intergenic |
| GGAATTGCCTCCAGAAATTC+AGG | 0.269943 | 5.3:-14192785 | MS.gene64901:intron |
| GTGCTTCTGGGAGGGTAATT+TGG | 0.274259 | 5.3:-14201212 | MS.gene64901:CDS |
| TTGCACTATAATAATGTTAA+TGG | 0.279884 | 5.3:-14199233 | MS.gene64901:CDS |
| ATCCTTCTGTGCCTCTATTT+GGG | 0.283774 | 5.3:+14198872 | None:intergenic |
| TTCAAATACAGTGCTCCTTT+TGG | 0.285333 | 5.3:+14200177 | None:intergenic |
| GCCAATACTCCTCCGTCTTC+TGG | 0.291254 | 5.3:-14201153 | MS.gene64901:CDS |
| CTTGAAGACATGTCTTCTTT+AGG | 0.296981 | 5.3:-14194701 | MS.gene64901:CDS |
| GAAGAGAGAGTTGTTGGGAT+TGG | 0.304464 | 5.3:+14201367 | None:intergenic |
| CAGCAGCACCATAGCTTCTA+AGG | 0.306346 | 5.3:+14200131 | None:intergenic |
| TCTGGTAAATTAAGCTTTGC+TGG | 0.311021 | 5.3:+14200010 | None:intergenic |
| TCAAATCTGAGTCACTGATT+TGG | 0.321448 | 5.3:+14199360 | None:intergenic |
| CGACTTCCGTGCAAATAATA+AGG | 0.322120 | 5.3:-14200044 | MS.gene64901:CDS |
| AATAATCAGTCCTAACTATC+TGG | 0.327755 | 5.3:+14199978 | None:intergenic |
| AAGAGAGAGTTGTTGGGATT+GGG | 0.331180 | 5.3:+14201368 | None:intergenic |
| TTTGCAGGCTGTGGCAGTTC+GGG | 0.343692 | 5.3:-14194322 | MS.gene64901:intron |
| TTGGGATTGGGAGGTGGGGA+TGG | 0.357454 | 5.3:+14201380 | None:intergenic |
| GAAATTAGATCCTCTGCTTC+AGG | 0.359545 | 5.3:+14194121 | None:intergenic |
| GAGTTGTTGGGATTGGGAGG+TGG | 0.362318 | 5.3:+14201374 | None:intergenic |
| AATCCCCATATCAGAAAGTT+TGG | 0.368474 | 5.3:+14194736 | None:intergenic |
| TGCTGTCAAACGTCTTGTTC+AGG | 0.374660 | 5.3:-14199114 | MS.gene64901:CDS |
| ATTTGCAGGCTGTGGCAGTT+CGG | 0.379266 | 5.3:-14194323 | MS.gene64901:intron |
| TAAACCCTGACCCCAATCTA+AGG | 0.380736 | 5.3:-14194090 | MS.gene64901:intron |
| CTAACAGGGATGTGGTTTCT+GGG | 0.381173 | 5.3:-14198028 | MS.gene64901:intron |
| TGTGCCAAACTTTCTGATAT+GGG | 0.386739 | 5.3:-14194740 | MS.gene64901:CDS |
| AGCACTGCTCCACTGGCTTT+AGG | 0.386884 | 5.3:-14192931 | MS.gene64901:CDS |
| AGTTGTTGGGATTGGGAGGT+GGG | 0.387353 | 5.3:+14201375 | None:intergenic |
| AGGATGATATGCAATGTCTT+TGG | 0.391060 | 5.3:-14198854 | MS.gene64901:CDS |
| TGTACTCACCAGTAGAACTA+TGG | 0.395638 | 5.3:+14194678 | None:intergenic |
| TCTTTAGGCCATAGTTCTAC+TGG | 0.397728 | 5.3:-14194686 | MS.gene64901:intron |
| CCAGCCACCAGTGCCGTAAC+AGG | 0.398229 | 5.3:+14201264 | None:intergenic |
| GCCGTTAGTTTCGAATTCAT+TGG | 0.398371 | 5.3:-14201295 | MS.gene64901:CDS |
| CTCATCAACTTTAGTAAAAG+TGG | 0.398970 | 5.3:+14198810 | None:intergenic |
| GGGAGAAATCTATCACTCTT+AGG | 0.405694 | 5.3:+14199626 | None:intergenic |
| TGGAAGCATCAGCTTTAAAT+CGG | 0.409181 | 5.3:+14199655 | None:intergenic |
| CCAAATATTGTTCGATGGTA+TGG | 0.409739 | 5.3:-14199035 | MS.gene64901:CDS |
| TGCAATACTTCAATCGCCTT+TGG | 0.414925 | 5.3:+14193066 | None:intergenic |
| GCTGTAGATTTGTTTAGTTT+AGG | 0.415194 | 5.3:-14194256 | MS.gene64901:CDS |
| GGTGGAAGAGCGGGAGGAGA+GGG | 0.416619 | 5.3:+14201327 | None:intergenic |
| CGCTCAAGTCGCTCTCCAAA+TGG | 0.417649 | 5.3:+14194196 | None:intergenic |
| CGTCCCTGAAGAAGCTGCTC+TGG | 0.418016 | 5.3:+14194289 | None:intergenic |
| ATCTTGTTGAAAGTGCTTCT+GGG | 0.421491 | 5.3:-14201224 | MS.gene64901:CDS |
| TTATTCCTAGTTCATGCAAA+TGG | 0.423327 | 5.3:+14198000 | None:intergenic |
| TCATTGAATCCTTCCGGAAC+AGG | 0.425832 | 5.3:+14192437 | None:intergenic |
| AAGTAGTCATTGAATCCTTC+CGG | 0.429425 | 5.3:+14192431 | None:intergenic |
| GGAACTGATAGGACCTGTTC+CGG | 0.436582 | 5.3:-14192450 | MS.gene64901:CDS |
| TGCATTACCATTACTATCAT+AGG | 0.440736 | 5.3:+14199541 | None:intergenic |
| CAAACAGAAAATTCTTTCGT+TGG | 0.441930 | 5.3:+14199744 | None:intergenic |
| CAAGGGAAGTTGATCTGAGC+AGG | 0.442572 | 5.3:-14199481 | MS.gene64901:CDS |
| GAGAATGACATACCTTAGAT+TGG | 0.442945 | 5.3:+14194078 | None:intergenic |
| GACCTTCATATATCCCTTCA+AGG | 0.444624 | 5.3:+14199144 | None:intergenic |
| ACAAATCTACAGCCCGTGTT+TGG | 0.446120 | 5.3:+14194266 | None:intergenic |
| AGAATGACATACCTTAGATT+GGG | 0.447622 | 5.3:+14194079 | None:intergenic |
| TTGTTTGGGGTTTCAAATCC+CGG | 0.448162 | 5.3:+14197973 | None:intergenic |
| TGCAAAATGGGACGAAAAGA+TGG | 0.452150 | 5.3:-14192908 | MS.gene64901:CDS |
| ATCAGCTTTAAATCGGGCAT+TGG | 0.453000 | 5.3:+14199662 | None:intergenic |
| ACCAGAAGACGGAGGAGTAT+TGG | 0.457722 | 5.3:+14201152 | None:intergenic |
| TTTGAAGTGGATGCTAAAAC+AGG | 0.459175 | 5.3:-14200160 | MS.gene64901:CDS |
| ATCTTTCATGATCCCCACTT+TGG | 0.459310 | 5.3:-14201099 | MS.gene64901:CDS |
| CCTGTTACGGCACTGGTGGC+TGG | 0.460610 | 5.3:-14201264 | MS.gene64901:CDS |
| TCAGCTTTAAATCGGGCATT+GGG | 0.460946 | 5.3:+14199663 | None:intergenic |
| GCGCCAGAGCAGCTTCTTCA+GGG | 0.464230 | 5.3:-14194292 | MS.gene64901:CDS |
| TGTGGAGAAGAGAGAGTTGT+TGG | 0.464412 | 5.3:+14201361 | None:intergenic |
| GTTGTTGGGATTGGGAGGTG+GGG | 0.464952 | 5.3:+14201376 | None:intergenic |
| TTATTGAATGTGGTGATGAC+TGG | 0.466806 | 5.3:-14201128 | MS.gene64901:CDS |
| ACATACCTTAGATTGGGGTC+AGG | 0.467825 | 5.3:+14194085 | None:intergenic |
| CCTTGGTGCAGTGATCTCCA+TGG | 0.468092 | 5.3:+14199499 | None:intergenic |
| GACAGGACACTTCACTGTTC+CGG | 0.468413 | 5.3:-14202227 | MS.gene64901:intron |
| ACTAAGTGGGGTCGGCTACA+TGG | 0.470126 | 5.3:-14197918 | MS.gene64901:CDS |
| CTGGTTCAGGAATAGTGTTA+TGG | 0.471457 | 5.3:-14199937 | MS.gene64901:CDS |
| CTTGTCCATTTGCATGAACT+AGG | 0.476007 | 5.3:-14198005 | MS.gene64901:CDS |
| ATTAGAGAGCACTGCTCCAC+TGG | 0.476795 | 5.3:-14192938 | MS.gene64901:CDS |
| GACGATGACGGTGGAAGAGC+GGG | 0.477305 | 5.3:+14201318 | None:intergenic |
| CTGGTTTATCAGGAACTGAT+AGG | 0.478342 | 5.3:-14192461 | MS.gene64901:intron |
| GTGGAGAAGAGAGAGTTGTT+GGG | 0.481274 | 5.3:+14201362 | None:intergenic |
| TGATCCCCACTTTGGTAAAA+CGG | 0.481566 | 5.3:-14201091 | MS.gene64901:intron |
| CTGCTCAGATCAACTTCCCT+TGG | 0.482122 | 5.3:+14199482 | None:intergenic |
| GCTCCATCTTTCGACACAAT+AGG | 0.482665 | 5.3:+14200214 | None:intergenic |
| CAGGCTGTGGCAGTTCGGGT+TGG | 0.484799 | 5.3:-14194318 | MS.gene64901:CDS |
| CGGTGGAAGAGCGGGAGGAG+AGG | 0.487007 | 5.3:+14201326 | None:intergenic |
| CATCATATTACCACCATGAC+CGG | 0.489087 | 5.3:+14199604 | None:intergenic |
| ACAGCAGGAAGACATCCATT+TGG | 0.490940 | 5.3:-14194211 | MS.gene64901:CDS |
| ACGCCTATTGTGTCGAAAGA+TGG | 0.491151 | 5.3:-14200217 | MS.gene64901:CDS |
| ATCTCAGAACTCCAAAATAG+AGG | 0.492786 | 5.3:+14193039 | None:intergenic |
| ACTGGCTTTAGGTGCAAAAT+GGG | 0.494715 | 5.3:-14192920 | MS.gene64901:CDS |
| TTCTTCAGGGACGCCAAACA+CGG | 0.496323 | 5.3:-14194279 | MS.gene64901:CDS |
| AATGGCACCATTGTCCTTGA+AGG | 0.500351 | 5.3:-14199158 | MS.gene64901:CDS |
| GGAGAATATACGAATTCATA+AGG | 0.500634 | 5.3:-14199276 | MS.gene64901:CDS |
| AAAGATGGAGCTGTTATACT+TGG | 0.504620 | 5.3:-14200202 | MS.gene64901:CDS |
| CTATCACTCTTAGGTTGTGA+TGG | 0.506586 | 5.3:+14199635 | None:intergenic |
| ATGTAGCCGACCCCACTTAG+TGG | 0.509347 | 5.3:+14197920 | None:intergenic |
| CGACCCCACTTAGTGGGATA+AGG | 0.509377 | 5.3:+14197927 | None:intergenic |
| CAGAAAACCTGTTACGGCAC+TGG | 0.509659 | 5.3:-14201271 | MS.gene64901:CDS |
| ACAGCGTCCGAGACTTGTTG+AGG | 0.510213 | 5.3:-14192837 | MS.gene64901:CDS |
| CCAGCTTTCATTGCCAACAT+TGG | 0.511232 | 5.3:-14192883 | MS.gene64901:CDS |
| CCAATGTTGGCAATGAAAGC+TGG | 0.511372 | 5.3:+14192883 | None:intergenic |
| AAGATGAAGACAACGGAAAG+TGG | 0.512535 | 5.3:-14202278 | MS.gene64901:CDS |
| GGAAAGCTCCTTAGAAGCTA+TGG | 0.513931 | 5.3:-14200139 | MS.gene64901:CDS |
| TTCAGATTTGTCAGAAAACT+CGG | 0.515086 | 5.3:-14198934 | MS.gene64901:CDS |
| GGAGCGTTGTGCATGCAACT+TGG | 0.515887 | 5.3:-14198976 | MS.gene64901:CDS |
| AGAGAGTTGTTGGGATTGGG+AGG | 0.517951 | 5.3:+14201371 | None:intergenic |
| GAACAGTGAAGTGTCCTGTC+GGG | 0.520223 | 5.3:+14202230 | None:intergenic |
| ACTTTGCAAGTCGATTTCCT+AGG | 0.520525 | 5.3:-14192412 | MS.gene64901:CDS |
| TTAAATAAAGAAATCGCAAA+GGG | 0.522398 | 5.3:-14199185 | MS.gene64901:CDS |
| ATTGGACAGAAAACCTGTTA+CGG | 0.523174 | 5.3:-14201277 | MS.gene64901:CDS |
| CATACCTTAGATTGGGGTCA+GGG | 0.524041 | 5.3:+14194086 | None:intergenic |
| GATAGATTTCTCCCCGGTCA+TGG | 0.524362 | 5.3:-14199617 | MS.gene64901:CDS |
| AACTTTAGTAAAAGTGGAGA+TGG | 0.524497 | 5.3:+14198816 | None:intergenic |
| TTTGTCCACTAACAGGGATG+TGG | 0.525132 | 5.3:-14198036 | MS.gene64901:intron |
| ATCATATTACCACCATGACC+GGG | 0.528935 | 5.3:+14199605 | None:intergenic |
| ATATAATTTGGCACAGTCAC+AGG | 0.530450 | 5.3:+14199578 | None:intergenic |
| TTCATCCAAATATTGTTCGA+TGG | 0.531830 | 5.3:-14199040 | MS.gene64901:CDS |
| CTGTTATACTTGGATCCAAA+AGG | 0.532478 | 5.3:-14200192 | MS.gene64901:CDS |
| CTTGGTGCAGTGATCTCCAT+GGG | 0.533813 | 5.3:+14199500 | None:intergenic |
| GAAATCGCAAAGGGAAGTAA+TGG | 0.534963 | 5.3:-14199176 | MS.gene64901:CDS |
| GTTGATGCTTATCAAGAGAA+AGG | 0.535298 | 5.3:-14199692 | MS.gene64901:CDS |
| TCATTTAATTGTCAGGCCAA+AGG | 0.535570 | 5.3:-14193082 | MS.gene64901:intron |
| GGCCCAAATAGAGGCACAGA+AGG | 0.535622 | 5.3:-14198874 | MS.gene64901:CDS |
| GCACTGGTGGCTGGTTTAGA+CGG | 0.536256 | 5.3:-14201255 | MS.gene64901:CDS |
| GTGATCTCCATGGGAGGCTG+CGG | 0.539014 | 5.3:+14199509 | None:intergenic |
| GTGCCAAACTTTCTGATATG+GGG | 0.540780 | 5.3:-14194739 | MS.gene64901:CDS |
| TGCATCAAGTGAAGCTGTCA+AGG | 0.545531 | 5.3:+14199856 | None:intergenic |
| AATGTTAATGGACGCAGGAT+CGG | 0.546974 | 5.3:-14199221 | MS.gene64901:CDS |
| CAACGCCTTATCCCACTAAG+TGG | 0.551576 | 5.3:-14197932 | MS.gene64901:CDS |
| CAAGCTCCTTATTATTTGCA+CGG | 0.551838 | 5.3:+14200038 | None:intergenic |
| TCATGACCCTCAACAAGTCT+CGG | 0.551931 | 5.3:+14192830 | None:intergenic |
| GGAAGCATCAGCTTTAAATC+GGG | 0.552574 | 5.3:+14199656 | None:intergenic |
| CAATGTCTTTGGAAATCGAA+TGG | 0.553385 | 5.3:-14198843 | MS.gene64901:CDS |
| GTCCTTGAAGGGATATATGA+AGG | 0.553647 | 5.3:-14199146 | MS.gene64901:CDS |
| AAAATCACCTATGATAGTAA+TGG | 0.555445 | 5.3:-14199548 | MS.gene64901:CDS |
| TCTTCAGGGACGCCAAACAC+GGG | 0.556320 | 5.3:-14194278 | MS.gene64901:CDS |
| ATTATTGGTTGTATTATCTG+TGG | 0.560576 | 5.3:-14199438 | MS.gene64901:CDS |
| AGAGTTTCTTCCTGAAGCAG+AGG | 0.562454 | 5.3:-14194131 | MS.gene64901:CDS |
| TATGCTTCCGCAGCCTCCCA+TGG | 0.564293 | 5.3:-14199516 | MS.gene64901:CDS |
| TCATAAGGAAGCAGAAAATG+AGG | 0.565601 | 5.3:-14199261 | MS.gene64901:CDS |
| TTATGATGTTGACAGTGGCT+TGG | 0.565769 | 5.3:-14199819 | MS.gene64901:CDS |
| CGGAAAGTGGAAACATGAGA+TGG | 0.566239 | 5.3:-14202265 | MS.gene64901:CDS |
| TACACTTCAATCAAGAGCCT+AGG | 0.567714 | 5.3:+14192395 | None:intergenic |
| AAGGAGCACTGTATTTGAAG+TGG | 0.567852 | 5.3:-14200173 | MS.gene64901:CDS |
| AACGCCTTATCCCACTAAGT+GGG | 0.569166 | 5.3:-14197931 | MS.gene64901:CDS |
| AGACGGAGGAGTATTGGCAG+AGG | 0.569421 | 5.3:+14201158 | None:intergenic |
| ACAGCTTCACTTGATGCAGA+AGG | 0.569623 | 5.3:-14199851 | MS.gene64901:CDS |
| TTGAAACCTGCAGAGACTCA+AGG | 0.571885 | 5.3:-14200266 | MS.gene64901:intron |
| TGTTGAAAGTGCTTCTGGGA+GGG | 0.574803 | 5.3:-14201220 | MS.gene64901:CDS |
| TTTCTGTCAGGACACGCATA+CGG | 0.575186 | 5.3:+14199785 | None:intergenic |
| CAGCGTCCGAGACTTGTTGA+GGG | 0.579276 | 5.3:-14192836 | MS.gene64901:CDS |
| TCGCCTGTAACGACCAATGT+TGG | 0.582138 | 5.3:+14192870 | None:intergenic |
| GGGTGTGTTTACTACCCGAC+AGG | 0.584271 | 5.3:-14202244 | MS.gene64901:CDS |
| GAGGAGTATTGGCAGAGGAA+TGG | 0.586760 | 5.3:+14201163 | None:intergenic |
| TATTGAATGTGGTGATGACT+GGG | 0.590060 | 5.3:-14201127 | MS.gene64901:CDS |
| TCAAGTGAAGCTGTCAAGGT+AGG | 0.598978 | 5.3:+14199860 | None:intergenic |
| CGACGATGACGGTGGAAGAG+CGG | 0.602144 | 5.3:+14201317 | None:intergenic |
| TCTTCTGGTCTTATTGAATG+TGG | 0.602348 | 5.3:-14201138 | MS.gene64901:CDS |
| ATGGCACCATTGTCCTTGAA+GGG | 0.603709 | 5.3:-14199157 | MS.gene64901:CDS |
| CATGGAGATCACTGCACCAA+GGG | 0.603861 | 5.3:-14199498 | MS.gene64901:CDS |
| TATGTCAGTAGCTGAATTTG+AGG | 0.604011 | 5.3:-14199912 | MS.gene64901:CDS |
| GAAACTAACGGCGACGATGA+CGG | 0.605860 | 5.3:+14201306 | None:intergenic |
| ATTAAATAAAGAAATCGCAA+AGG | 0.608576 | 5.3:-14199186 | MS.gene64901:CDS |
| ATATATCCCTTCAAGGACAA+TGG | 0.611274 | 5.3:+14199151 | None:intergenic |
| TCCAATGAATTCGAAACTAA+CGG | 0.611494 | 5.3:+14201294 | None:intergenic |
| GATGAAAGTCAGAAGCAATG+AGG | 0.611513 | 5.3:+14199057 | None:intergenic |
| TTGGCAGAGGAATGGTAGAT+CGG | 0.614229 | 5.3:+14201171 | None:intergenic |
| AGAGAGAAAGATGAAGACAA+CGG | 0.614887 | 5.3:-14202285 | None:intergenic |
| ATGCACAACGCTCCAGAGCA+AGG | 0.615402 | 5.3:+14198985 | None:intergenic |
| ATAATAATGTTAATGGACGC+AGG | 0.616006 | 5.3:-14199226 | MS.gene64901:CDS |
| AGTTATCTGCAACTACTGCA+AGG | 0.617433 | 5.3:-14192369 | MS.gene64901:CDS |
| ATGAACTAGGAATAATACAC+CGG | 0.621550 | 5.3:-14197992 | MS.gene64901:CDS |
| GGAACAGTGAAGTGTCCTGT+CGG | 0.622731 | 5.3:+14202229 | None:intergenic |
| CTGATAGGACCTGTTCCGGA+AGG | 0.623740 | 5.3:-14192446 | MS.gene64901:CDS |
| TGTAGCCGACCCCACTTAGT+GGG | 0.623805 | 5.3:+14197921 | None:intergenic |
| AAAACCTGTTACGGCACTGG+TGG | 0.625351 | 5.3:-14201268 | MS.gene64901:CDS |
| GAGAGGGAGAGAAACCGTTG+TGG | 0.628592 | 5.3:+14201343 | None:intergenic |
| TCTACTACTGCAATGTGGAG+TGG | 0.629640 | 5.3:-14200094 | MS.gene64901:CDS |
| TTGAAGGGATATATGAAGGT+CGG | 0.632387 | 5.3:-14199142 | MS.gene64901:CDS |
| GGAAAGTGGAAACATGAGAT+GGG | 0.633440 | 5.3:-14202264 | MS.gene64901:CDS |
| AACAGCAACATAATCAGCAA+CGG | 0.639691 | 5.3:+14200240 | None:intergenic |
| GATGACGGTGGAAGAGCGGG+AGG | 0.641097 | 5.3:+14201321 | None:intergenic |
| TGCAATGTGGAGTGGTGACA+AGG | 0.646125 | 5.3:-14200086 | MS.gene64901:CDS |
| GGTGCAGTGATCTCCATGGG+AGG | 0.646808 | 5.3:+14199503 | None:intergenic |
| AAGGGAAGTTGATCTGAGCA+GGG | 0.657506 | 5.3:-14199480 | MS.gene64901:CDS |
| CTTATCCCACTAAGTGGGGT+CGG | 0.658324 | 5.3:-14197926 | MS.gene64901:CDS |
| TTGTTGAAAGTGCTTCTGGG+AGG | 0.658498 | 5.3:-14201221 | MS.gene64901:CDS |
| CCATGGAGATCACTGCACCA+AGG | 0.661190 | 5.3:-14199499 | MS.gene64901:CDS |
| GAATGACATACCTTAGATTG+GGG | 0.664281 | 5.3:+14194080 | None:intergenic |
| AAGAGTGATAGATTTCTCCC+CGG | 0.666927 | 5.3:-14199623 | MS.gene64901:CDS |
| GAAGAAACCTGAATTTCTGG+AGG | 0.674226 | 5.3:+14192778 | None:intergenic |
| AGGAAGCAGAAAATGAGGCA+CGG | 0.679814 | 5.3:-14199256 | MS.gene64901:CDS |
| ACGCCTTATCCCACTAAGTG+GGG | 0.680454 | 5.3:-14197930 | MS.gene64901:CDS |
| AGATTTCTCCCCGGTCATGG+TGG | 0.682682 | 5.3:-14199614 | MS.gene64901:CDS |
| TCGCGACGTTAGTGACAGAG+TGG | 0.683668 | 5.3:-14193001 | MS.gene64901:CDS |
| CAACTCTCTCTTCTCCACAA+CGG | 0.685419 | 5.3:-14201357 | MS.gene64901:CDS |
| TGAACTAGGAATAATACACC+GGG | 0.688701 | 5.3:-14197991 | MS.gene64901:CDS |
| ATGTTTCTACTACTGCAATG+TGG | 0.690754 | 5.3:-14200099 | MS.gene64901:CDS |
| TCATATTACCACCATGACCG+GGG | 0.691294 | 5.3:+14199606 | None:intergenic |
| TATTGTTCGATGGTATGGTG+TGG | 0.697518 | 5.3:-14199030 | MS.gene64901:CDS |
| ACTAACGGCGACGATGACGG+TGG | 0.698087 | 5.3:+14201309 | None:intergenic |
| CATTCAATAAGACCAGAAGA+CGG | 0.705732 | 5.3:+14201141 | None:intergenic |
| TATGCTTATGATGTTGACAG+TGG | 0.706219 | 5.3:-14199824 | MS.gene64901:CDS |
| GAGTGGTGACAAGGACAGTG+AGG | 0.708835 | 5.3:-14200077 | MS.gene64901:CDS |
| TCAATAAGACCAGAAGACGG+AGG | 0.754525 | 5.3:+14201144 | None:intergenic |
| AGTGGTGACAAGGACAGTGA+GGG | 0.770404 | 5.3:-14200076 | MS.gene64901:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14192328 | 14202297 | 14192328 | ID=MS.gene64901 |
| chr5.3 | mRNA | 14192328 | 14202297 | 14192328 | ID=MS.gene64901.t1;Parent=MS.gene64901 |
| chr5.3 | exon | 14202228 | 14202297 | 14202228 | ID=MS.gene64901.t1.exon1;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14202228 | 14202297 | 14202228 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14201092 | 14201408 | 14201092 | ID=MS.gene64901.t1.exon2;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14201092 | 14201408 | 14201092 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14198810 | 14200275 | 14198810 | ID=MS.gene64901.t1.exon3;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14198810 | 14200275 | 14198810 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14197900 | 14198043 | 14197900 | ID=MS.gene64901.t1.exon4;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14197900 | 14198043 | 14197900 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14194687 | 14194769 | 14194687 | ID=MS.gene64901.t1.exon5;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14194687 | 14194769 | 14194687 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14194091 | 14194337 | 14194091 | ID=MS.gene64901.t1.exon6;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14194091 | 14194337 | 14194091 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14192786 | 14193089 | 14192786 | ID=MS.gene64901.t1.exon7;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14192786 | 14193089 | 14192786 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| chr5.3 | exon | 14192328 | 14192471 | 14192328 | ID=MS.gene64901.t1.exon8;Parent=MS.gene64901.t1 |
| chr5.3 | CDS | 14192328 | 14192471 | 14192328 | ID=cds.MS.gene64901.t1;Parent=MS.gene64901.t1 |
| Gene Sequence |
| Protein sequence |