Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64916.t1 | XP_024630856.1 | 79.2 | 766 | 35 | 2 | 1 | 669 | 14 | 752 | 0.00E+00 | 1176.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64916.t1 | Q9SWG3 | 28.9 | 660 | 362 | 12 | 3 | 560 | 57 | 711 | 2.4e-79 | 298.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64916.t1 | A0A2Z6P9Q3 | 68.0 | 765 | 138 | 7 | 1 | 663 | 66 | 825 | 5.6e-287 | 996.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64916.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64916.t1 | MTR_7g446060 | 77.174 | 92 | 20 | 1 | 73 | 164 | 1 | 91 | 5.33e-42 | 149 |
| MS.gene64916.t1 | MTR_6g051425 | 37.000 | 200 | 126 | 0 | 64 | 263 | 92 | 291 | 3.63e-40 | 150 |
| MS.gene64916.t1 | MTR_2g090105 | 44.271 | 192 | 80 | 7 | 479 | 665 | 16 | 185 | 3.52e-35 | 132 |
| MS.gene64916.t1 | MTR_7g031620 | 61.728 | 81 | 31 | 0 | 3 | 83 | 2 | 82 | 1.88e-28 | 109 |
| MS.gene64916.t1 | MTR_5g023310 | 40.764 | 157 | 26 | 2 | 129 | 285 | 16 | 105 | 3.09e-27 | 106 |
| MS.gene64916.t1 | MTR_0558s0020 | 27.481 | 262 | 157 | 5 | 1 | 234 | 40 | 296 | 2.28e-24 | 104 |
| MS.gene64916.t1 | MTR_1g008290 | 35.616 | 146 | 89 | 4 | 46 | 190 | 3 | 144 | 2.53e-21 | 91.3 |
| MS.gene64916.t1 | MTR_0856s0010 | 38.710 | 124 | 74 | 2 | 1 | 123 | 38 | 160 | 5.77e-20 | 87.8 |
| MS.gene64916.t1 | MTR_4g035820 | 30.435 | 253 | 150 | 9 | 3 | 238 | 81 | 324 | 6.92e-20 | 94.7 |
| MS.gene64916.t1 | MTR_8g446020 | 28.177 | 181 | 125 | 2 | 57 | 234 | 78 | 256 | 1.04e-19 | 89.7 |
| MS.gene64916.t1 | MTR_6g090505 | 28.333 | 180 | 124 | 2 | 57 | 233 | 53 | 230 | 9.67e-17 | 82.8 |
| MS.gene64916.t1 | MTR_1g083640 | 25.322 | 233 | 141 | 5 | 1 | 205 | 55 | 282 | 1.04e-16 | 81.6 |
| MS.gene64916.t1 | MTR_7g446510 | 30.488 | 164 | 114 | 0 | 79 | 242 | 166 | 329 | 2.63e-16 | 81.3 |
| MS.gene64916.t1 | MTR_1g070355 | 27.350 | 234 | 160 | 6 | 2 | 228 | 79 | 309 | 3.06e-16 | 82.8 |
| MS.gene64916.t1 | MTR_7g446480 | 30.488 | 164 | 114 | 0 | 79 | 242 | 151 | 314 | 4.53e-15 | 77.0 |
| MS.gene64916.t1 | MTR_7g446520 | 24.066 | 241 | 161 | 4 | 1 | 236 | 92 | 315 | 3.85e-12 | 68.6 |
| MS.gene64916.t1 | MTR_1g013060 | 26.601 | 203 | 135 | 4 | 3 | 194 | 30 | 229 | 9.67e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64916.t1 | AT4G15090 | 34.606 | 419 | 265 | 6 | 1 | 411 | 55 | 472 | 1.16e-84 | 284 |
| MS.gene64916.t1 | AT4G15090 | 34.606 | 419 | 265 | 6 | 1 | 411 | 55 | 472 | 1.16e-84 | 284 |
| MS.gene64916.t1 | AT4G15090 | 34.606 | 419 | 265 | 6 | 1 | 411 | 55 | 472 | 1.16e-84 | 284 |
| MS.gene64916.t1 | AT4G15090 | 34.606 | 419 | 265 | 6 | 1 | 411 | 55 | 472 | 1.16e-84 | 284 |
| MS.gene64916.t1 | AT4G15090 | 34.606 | 419 | 265 | 6 | 1 | 411 | 55 | 472 | 1.16e-84 | 284 |
| MS.gene64916.t1 | AT4G38180 | 35.468 | 406 | 253 | 5 | 1 | 398 | 77 | 481 | 1.84e-84 | 282 |
| MS.gene64916.t1 | AT1G76320 | 35.980 | 403 | 244 | 6 | 1 | 398 | 1 | 394 | 3.49e-80 | 268 |
| MS.gene64916.t1 | AT1G76320 | 35.980 | 403 | 244 | 6 | 1 | 398 | 1 | 394 | 6.17e-80 | 269 |
| MS.gene64916.t1 | AT1G76320 | 35.980 | 403 | 244 | 6 | 1 | 398 | 1 | 394 | 6.22e-80 | 269 |
| MS.gene64916.t1 | AT1G76320 | 35.980 | 403 | 244 | 6 | 1 | 398 | 1 | 394 | 6.22e-80 | 269 |
| MS.gene64916.t1 | AT1G52520 | 34.321 | 405 | 243 | 7 | 1 | 398 | 89 | 477 | 7.58e-75 | 254 |
| MS.gene64916.t1 | AT1G80010 | 35.000 | 400 | 238 | 8 | 1 | 386 | 99 | 490 | 8.62e-74 | 252 |
| MS.gene64916.t1 | AT3G22170 | 32.933 | 416 | 238 | 7 | 1 | 398 | 74 | 466 | 2.65e-72 | 250 |
| MS.gene64916.t1 | AT3G22170 | 32.933 | 416 | 238 | 7 | 1 | 398 | 74 | 466 | 2.65e-72 | 250 |
| MS.gene64916.t1 | AT2G27110 | 33.419 | 389 | 235 | 4 | 1 | 388 | 53 | 418 | 1.08e-66 | 235 |
| MS.gene64916.t1 | AT2G27110 | 33.419 | 389 | 235 | 4 | 1 | 388 | 53 | 418 | 1.08e-66 | 235 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 1 | 384 | 4.67e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 1 | 384 | 4.95e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 42 | 425 | 5.83e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 42 | 425 | 8.64e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 42 | 425 | 8.64e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 42 | 425 | 8.64e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 42 | 425 | 9.59e-63 | 223 |
| MS.gene64916.t1 | AT2G32250 | 32.706 | 425 | 238 | 8 | 1 | 418 | 42 | 425 | 9.59e-63 | 223 |
| MS.gene64916.t1 | AT2G27110 | 38.433 | 268 | 156 | 2 | 122 | 388 | 14 | 273 | 1.40e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 30.995 | 442 | 226 | 8 | 2 | 411 | 26 | 420 | 2.62e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 30.995 | 442 | 226 | 8 | 2 | 411 | 26 | 420 | 2.71e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 30.995 | 442 | 226 | 8 | 2 | 411 | 26 | 420 | 2.71e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 30.995 | 442 | 226 | 8 | 2 | 411 | 40 | 434 | 2.95e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 30.995 | 442 | 226 | 8 | 2 | 411 | 26 | 420 | 3.46e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 30.995 | 442 | 226 | 8 | 2 | 411 | 26 | 420 | 3.46e-60 | 216 |
| MS.gene64916.t1 | AT4G19990 | 32.648 | 389 | 211 | 7 | 27 | 411 | 22 | 363 | 6.41e-59 | 211 |
| MS.gene64916.t1 | AT3G06250 | 30.829 | 386 | 226 | 7 | 1 | 384 | 194 | 540 | 4.17e-57 | 207 |
| MS.gene64916.t1 | AT3G06250 | 30.829 | 386 | 226 | 7 | 1 | 384 | 194 | 540 | 4.17e-57 | 207 |
| MS.gene64916.t1 | AT3G06250 | 30.829 | 386 | 226 | 7 | 1 | 384 | 194 | 540 | 4.17e-57 | 207 |
| MS.gene64916.t1 | AT5G18960 | 31.008 | 387 | 227 | 11 | 1 | 384 | 215 | 564 | 3.93e-55 | 201 |
| MS.gene64916.t1 | AT5G18960 | 31.008 | 387 | 227 | 11 | 1 | 384 | 215 | 564 | 3.93e-55 | 201 |
| MS.gene64916.t1 | AT1G10240 | 29.455 | 404 | 249 | 12 | 11 | 391 | 62 | 452 | 9.47e-49 | 182 |
| MS.gene64916.t1 | AT1G10240 | 29.455 | 404 | 249 | 12 | 11 | 391 | 62 | 452 | 9.47e-49 | 182 |
| MS.gene64916.t1 | AT4G38170 | 36.864 | 236 | 143 | 3 | 169 | 402 | 19 | 250 | 1.28e-47 | 176 |
| MS.gene64916.t1 | AT5G28530 | 25.362 | 414 | 271 | 9 | 3 | 388 | 61 | 464 | 3.09e-38 | 151 |
| MS.gene64916.t1 | AT5G28530 | 25.362 | 414 | 271 | 9 | 3 | 388 | 61 | 464 | 3.09e-38 | 151 |
| MS.gene64916.t1 | AT5G28530 | 25.362 | 414 | 271 | 9 | 3 | 388 | 61 | 464 | 3.32e-38 | 151 |
| MS.gene64916.t1 | AT5G28530 | 29.139 | 151 | 104 | 2 | 240 | 388 | 252 | 401 | 8.72e-17 | 84.7 |
| MS.gene64916.t1 | AT5G28530 | 29.139 | 151 | 104 | 2 | 240 | 388 | 252 | 401 | 9.43e-17 | 84.7 |
Find 90 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGTTTATTTGAGTTTA+AGG | 0.126982 | 5.3:+14431203 | MS.gene64916:CDS |
| TCCATCTTGGTCAGTAATTA+TGG | 0.221359 | 5.3:-14430491 | None:intergenic |
| AAGAATTATGCAAGATGTTT+AGG | 0.244212 | 5.3:+14429695 | MS.gene64916:CDS |
| TATGCAAGATGTTTAGGTTT+TGG | 0.256539 | 5.3:+14429701 | MS.gene64916:CDS |
| TTTGAGCATAAGTGATTTCA+TGG | 0.262311 | 5.3:+14430663 | MS.gene64916:CDS |
| TGTATGTGAGAGACACATTT+TGG | 0.270477 | 5.3:+14430776 | MS.gene64916:CDS |
| CACCATCGATGGCGAGCTTT+CGG | 0.279320 | 5.3:-14430544 | None:intergenic |
| ACACTTATTAAAAGTGGTTT+TGG | 0.290751 | 5.3:+14431336 | MS.gene64916:CDS |
| TGGAACAATTACTATTTCTA+AGG | 0.295449 | 5.3:+14429889 | MS.gene64916:CDS |
| TAGTATCCTCCTTCGACAAT+AGG | 0.312589 | 5.3:-14430408 | None:intergenic |
| AGGGCTGCTTATGAGTATTT+TGG | 0.315150 | 5.3:+14430277 | MS.gene64916:CDS |
| TGAAGAAGCAAATCCGTAAA+AGG | 0.325895 | 5.3:-14431409 | None:intergenic |
| TGCTGTTTATTTGAGTTTAA+GGG | 0.334665 | 5.3:+14431204 | MS.gene64916:CDS |
| CTAAAATATCTTGATTTGCT+TGG | 0.342688 | 5.3:-14429944 | None:intergenic |
| CATTCTTCATTGCTCCATCT+TGG | 0.348218 | 5.3:-14430504 | None:intergenic |
| ATATAGACCCTAGTATAAAA+AGG | 0.351811 | 5.3:+14429978 | MS.gene64916:CDS |
| ACGCTGCAACTCTTCATTTC+CGG | 0.353530 | 5.3:-14431367 | None:intergenic |
| TTTCTTGGTTGTTCACTACT+TGG | 0.357896 | 5.3:+14430437 | MS.gene64916:CDS |
| ACCATCGATGGCGAGCTTTC+GGG | 0.381382 | 5.3:-14430543 | None:intergenic |
| AAAATATCTTGATGTTAATC+AGG | 0.381504 | 5.3:+14431922 | MS.gene64916:CDS |
| TTGTGTTACAGAAAGTAAAA+AGG | 0.383201 | 5.3:+14431110 | MS.gene64916:intron |
| CATGGTCAGTCAGTTCTGTT+AGG | 0.383640 | 5.3:+14430379 | MS.gene64916:CDS |
| CTTGTGGCATATAATGAAAA+AGG | 0.386165 | 5.3:+14430567 | MS.gene64916:CDS |
| TAGAATAGAGAACTTAAAAC+TGG | 0.390920 | 5.3:+14431470 | MS.gene64916:CDS |
| AGTATCCTCCTTCGACAATA+GGG | 0.392582 | 5.3:-14430407 | None:intergenic |
| ATGATGAATGATCATTTATA+TGG | 0.403678 | 5.3:-14432180 | None:intergenic |
| GGATATGATAACCTTACATT+CGG | 0.409109 | 5.3:+14430073 | MS.gene64916:CDS |
| CCTTTACTTCGAGTCGCTAC+AGG | 0.409218 | 5.3:-14431573 | None:intergenic |
| AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 5.3:+14431592 | MS.gene64916:CDS |
| GTTTGATGAGCGTCATCGTT+GGG | 0.431278 | 5.3:+14430747 | MS.gene64916:CDS |
| AAGTGAGGCGGCTTCGACTT+GGG | 0.432744 | 5.3:+14430125 | MS.gene64916:CDS |
| ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | 5.3:-14430320 | None:intergenic |
| TTAATATCCTTCCTCCATCT+TGG | 0.438245 | 5.3:-14431303 | None:intergenic |
| CTTGTTATATATTGCCAAGA+TGG | 0.439590 | 5.3:+14431289 | MS.gene64916:CDS |
| AAGAAGCTTGCTGGAAAGAA+AGG | 0.445180 | 5.3:+14431645 | MS.gene64916:CDS |
| CATGATAATGAATGGTTGAA+AGG | 0.452805 | 5.3:+14430721 | MS.gene64916:CDS |
| GATATGATAACCTTACATTC+GGG | 0.457280 | 5.3:+14430074 | MS.gene64916:CDS |
| ATGATCATTCATCATCATGA+TGG | 0.461994 | 5.3:+14432188 | MS.gene64916:CDS |
| TCTATGCTTTGAGAAGAATA+TGG | 0.462169 | 5.3:-14432034 | None:intergenic |
| ATATATACACTTATTAAAAG+TGG | 0.471649 | 5.3:+14431330 | MS.gene64916:CDS |
| ACTCCAACAAAAGGAGCAAA+AGG | 0.476605 | 5.3:-14430349 | None:intergenic |
| TCTTGAACTTTAGATATACT+AGG | 0.479097 | 5.3:-14431797 | None:intergenic |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 5.3:+14430257 | MS.gene64916:CDS |
| TACTTACATTAATCCCAGCT+TGG | 0.488151 | 5.3:-14430018 | None:intergenic |
| CCTGTAGCGACTCGAAGTAA+AGG | 0.488591 | 5.3:+14431573 | MS.gene64916:CDS |
| TAGCATGAAAACACACTGTA+AGG | 0.490277 | 5.3:+14429838 | MS.gene64916:CDS |
| AGTTAAAGACATAATGTTCA+AGG | 0.493487 | 5.3:+14431143 | MS.gene64916:CDS |
| CTGTAGCGACTCGAAGTAAA+GGG | 0.498287 | 5.3:+14431574 | MS.gene64916:CDS |
| TCCCGAAAGCTCGCCATCGA+TGG | 0.503126 | 5.3:+14430542 | MS.gene64916:CDS |
| TTTGTTGGAGTAAATCATCA+TGG | 0.506547 | 5.3:+14430361 | MS.gene64916:CDS |
| AGGCGGCTTCGACTTGGGAC+AGG | 0.507987 | 5.3:+14430130 | MS.gene64916:CDS |
| GTCAATCACATCAAGATCAA+TGG | 0.511334 | 5.3:-14431846 | None:intergenic |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 5.3:+14430258 | MS.gene64916:CDS |
| TGATGATTTACTCCAACAAA+AGG | 0.515106 | 5.3:-14430358 | None:intergenic |
| TGTTTGATGAGCGTCATCGT+TGG | 0.518510 | 5.3:+14430746 | MS.gene64916:CDS |
| AAAGTGAGGCGGCTTCGACT+TGG | 0.518819 | 5.3:+14430124 | MS.gene64916:CDS |
| TTGGAGGTTAATGACCAAGC+TGG | 0.528235 | 5.3:+14430004 | MS.gene64916:CDS |
| ATGATAATGAATGGTTGAAA+GGG | 0.531139 | 5.3:+14430722 | MS.gene64916:CDS |
| AAATGATTTATCAAAAGTAA+TGG | 0.531224 | 5.3:+14431446 | MS.gene64916:CDS |
| TGGAGGTTAATGACCAAGCT+GGG | 0.539674 | 5.3:+14430005 | MS.gene64916:CDS |
| CTCGCCATCGATGGTGCTTG+TGG | 0.540244 | 5.3:+14430551 | MS.gene64916:CDS |
| TACTCACATAGCTTCTTGCA+CGG | 0.540398 | 5.3:-14429787 | None:intergenic |
| ATGAACTTCATGATAATGAA+TGG | 0.543870 | 5.3:+14430713 | MS.gene64916:CDS |
| TGGTCAGTAATTATGGCTTG+TGG | 0.548697 | 5.3:-14430484 | None:intergenic |
| AAGTGATTTCATGGAGAAGT+GGG | 0.549527 | 5.3:+14430672 | MS.gene64916:CDS |
| AAATCCGTAAAAGGCATCGC+AGG | 0.562477 | 5.3:-14431400 | None:intergenic |
| TAAGTGATTTCATGGAGAAG+TGG | 0.562788 | 5.3:+14430671 | MS.gene64916:CDS |
| ATGGCGAGCTTTCGGGAAGA+CGG | 0.568527 | 5.3:-14430536 | None:intergenic |
| AATGTATGTGTGTCTTCAGA+TGG | 0.571681 | 5.3:+14429869 | MS.gene64916:CDS |
| GTTATATATTGCCAAGATGG+AGG | 0.585753 | 5.3:+14431292 | MS.gene64916:CDS |
| AGGTTGCGCCCTATTGTCGA+AGG | 0.587751 | 5.3:+14430399 | MS.gene64916:CDS |
| GCCATAATTACTGACCAAGA+TGG | 0.588574 | 5.3:+14430490 | MS.gene64916:CDS |
| TGTTAAGTAAGTGGTGTCGA+AGG | 0.588670 | 5.3:-14430311 | None:intergenic |
| GAAACTACATTGACAAAGTG+AGG | 0.593331 | 5.3:+14430110 | MS.gene64916:CDS |
| TATATTGCCAAGATGGAGGA+AGG | 0.599926 | 5.3:+14431296 | MS.gene64916:CDS |
| CACTTATCAAAGTCAAGAAG+AGG | 0.608354 | 5.3:+14431692 | MS.gene64916:CDS |
| TCTTGGCAATATATAACAAG+AGG | 0.613918 | 5.3:-14431286 | None:intergenic |
| CATGAAATTTAATTCTACAG+AGG | 0.616241 | 5.3:+14429655 | None:intergenic |
| GTTCTAAATATGAAACATTG+TGG | 0.622522 | 5.3:-14432057 | None:intergenic |
| ACTTGGTTAGAATGTATGCG+TGG | 0.623148 | 5.3:+14430454 | MS.gene64916:CDS |
| AGCAATGAAGAATGCAGTTG+AGG | 0.631682 | 5.3:+14430513 | MS.gene64916:CDS |
| AATGTGTCTCTCACATACAC+AGG | 0.631924 | 5.3:-14430772 | None:intergenic |
| TCTATGGTTGTTGAAGCAAG+TGG | 0.641961 | 5.3:+14430052 | MS.gene64916:CDS |
| CTTGGTTAGAATGTATGCGT+GGG | 0.645599 | 5.3:+14430455 | MS.gene64916:CDS |
| CTTGGCAATATATAACAAGA+GGG | 0.647143 | 5.3:-14431285 | None:intergenic |
| TATGCCACAAGCACCATCGA+TGG | 0.658002 | 5.3:-14430555 | None:intergenic |
| TTGCGCCCTATTGTCGAAGG+AGG | 0.658239 | 5.3:+14430402 | MS.gene64916:CDS |
| CTGTGAGCTTAAGAACACAA+AGG | 0.694006 | 5.3:-14431245 | None:intergenic |
| ATATGATAACCTTACATTCG+GGG | 0.715139 | 5.3:+14430075 | MS.gene64916:CDS |
| ACTACATTGACAAAGTGAGG+CGG | 0.739143 | 5.3:+14430113 | MS.gene64916:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATGTGTAAATAAAAT+TGG | - | chr5.3:14431968-14431987 | None:intergenic | 10.0% |
| !!! | ATTTATTTATTTTTATGTAG+GGG | + | chr5.3:14431774-14431793 | MS.gene64916:intron | 10.0% |
| !! | AAATGATTTATCAAAAGTAA+TGG | + | chr5.3:14431446-14431465 | MS.gene64916:CDS | 15.0% |
| !! | ATATATACACTTATTAAAAG+TGG | + | chr5.3:14431330-14431349 | MS.gene64916:CDS | 15.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | + | chr5.3:14430906-14430925 | MS.gene64916:intron | 15.0% |
| !! | TAAAATTGAAAAGGAAAATA+TGG | + | chr5.3:14430915-14430934 | MS.gene64916:intron | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr5.3:14430323-14430342 | None:intergenic | 15.0% |
| !!! | TAGTGAATTTTATTATGTAA+TGG | + | chr5.3:14430201-14430220 | MS.gene64916:CDS | 15.0% |
| !!! | TCTAACAAAATAATTTTGAA+TGG | - | chr5.3:14430167-14430186 | None:intergenic | 15.0% |
| !!! | TTAATGTAAGTAGAAATTTT+CGG | + | chr5.3:14430029-14430048 | MS.gene64916:CDS | 15.0% |
| !! | AAAATATCTTGATGTTAATC+AGG | + | chr5.3:14431922-14431941 | MS.gene64916:CDS | 20.0% |
| !! | ATAACTCATTCAAAATCTAT+TGG | + | chr5.3:14432002-14432021 | MS.gene64916:intron | 20.0% |
| !! | ATGATGAATGATCATTTATA+TGG | - | chr5.3:14432183-14432202 | None:intergenic | 20.0% |
| !! | ATTTGAATCTCAATTTCAAA+AGG | + | chr5.3:14430987-14431006 | MS.gene64916:intron | 20.0% |
| !! | TATACAAGCAATAATTCTAT+TGG | - | chr5.3:14430956-14430975 | None:intergenic | 20.0% |
| !!! | ACATCAAGATATTTTTGATT+TGG | - | chr5.3:14431917-14431936 | None:intergenic | 20.0% |
| !!! | ATACATTTTATTACGTGTAA+AGG | - | chr5.3:14431749-14431768 | None:intergenic | 20.0% |
| !!! | ATATTTTTGATTTGGATTGA+AGG | - | chr5.3:14431909-14431928 | None:intergenic | 20.0% |
| !!! | ATTCAAAATCTATTGGTTTT+AGG | + | chr5.3:14432009-14432028 | MS.gene64916:intron | 20.0% |
| !!! | ATTTGGCTTTAAAAGATTTT+TGG | - | chr5.3:14429816-14429835 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | + | chr5.3:14430207-14430226 | MS.gene64916:CDS | 20.0% |
| !!! | GAAAAAAGTATTTTACTCTA+GGG | + | chr5.3:14429759-14429778 | MS.gene64916:CDS | 20.0% |
| !!! | TATTTTTGATTTGGATTGAA+GGG | - | chr5.3:14431908-14431927 | None:intergenic | 20.0% |
| !!! | TTCATATTTAGAACTTTTAC+AGG | + | chr5.3:14432066-14432085 | MS.gene64916:CDS | 20.0% |
| !!! | TTGATAAATCATTTTCAGTA+TGG | - | chr5.3:14431440-14431459 | None:intergenic | 20.0% |
| ! | AAGAATTATGCAAGATGTTT+AGG | + | chr5.3:14429695-14429714 | MS.gene64916:CDS | 25.0% |
| ! | AGTTAAAGACATAATGTTCA+AGG | + | chr5.3:14431143-14431162 | MS.gene64916:CDS | 25.0% |
| ! | ATATAGACCCTAGTATAAAA+AGG | + | chr5.3:14429978-14429997 | MS.gene64916:CDS | 25.0% |
| ! | TAGAATAGAGAACTTAAAAC+TGG | + | chr5.3:14431470-14431489 | MS.gene64916:CDS | 25.0% |
| ! | TCTTGAACTTTAGATATACT+AGG | - | chr5.3:14431800-14431819 | None:intergenic | 25.0% |
| ! | TTGTGTTACAGAAAGTAAAA+AGG | + | chr5.3:14431110-14431129 | MS.gene64916:intron | 25.0% |
| !! | AAACTCTTTGAATTTTGCAT+TGG | - | chr5.3:14431019-14431038 | None:intergenic | 25.0% |
| !! | ACACTTATTAAAAGTGGTTT+TGG | + | chr5.3:14431336-14431355 | MS.gene64916:CDS | 25.0% |
| !! | ATGAACTTCATGATAATGAA+TGG | + | chr5.3:14430713-14430732 | MS.gene64916:CDS | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | + | chr5.3:14430722-14430741 | MS.gene64916:CDS | 25.0% |
| !! | ATGCTGTTTATTTGAGTTTA+AGG | + | chr5.3:14431203-14431222 | MS.gene64916:CDS | 25.0% |
| !! | ATTGCTTGTATAAGTCATTT+TGG | + | chr5.3:14430964-14430983 | MS.gene64916:intron | 25.0% |
| !! | GTTCTAAATATGAAACATTG+TGG | - | chr5.3:14432060-14432079 | None:intergenic | 25.0% |
| !! | TGCTGTTTATTTGAGTTTAA+GGG | + | chr5.3:14431204-14431223 | MS.gene64916:CDS | 25.0% |
| !!! | AGGATACTAAAACTTTTTCT+TGG | + | chr5.3:14430422-14430441 | MS.gene64916:CDS | 25.0% |
| !!! | CTAAAATATCTTGATTTGCT+TGG | - | chr5.3:14429947-14429966 | None:intergenic | 25.0% |
| !!! | GGAAAAAAGTATTTTACTCT+AGG | + | chr5.3:14429758-14429777 | MS.gene64916:CDS | 25.0% |
| !!! | TCGTTTACGAAATGTTTTTT+GGG | + | chr5.3:14430240-14430259 | MS.gene64916:CDS | 25.0% |
| !!! | TGGAACAATTACTATTTCTA+AGG | + | chr5.3:14429889-14429908 | MS.gene64916:CDS | 25.0% |
| AGCACAATCAGTACAAAAAA+GGG | + | chr5.3:14429728-14429747 | MS.gene64916:CDS | 30.0% | |
| ATATGATAACCTTACATTCG+GGG | + | chr5.3:14430075-14430094 | MS.gene64916:CDS | 30.0% | |
| CTTGGCAATATATAACAAGA+GGG | - | chr5.3:14431288-14431307 | None:intergenic | 30.0% | |
| CTTGTGGCATATAATGAAAA+AGG | + | chr5.3:14430567-14430586 | MS.gene64916:CDS | 30.0% | |
| GATATGATAACCTTACATTC+GGG | + | chr5.3:14430074-14430093 | MS.gene64916:CDS | 30.0% | |
| GGATATGATAACCTTACATT+CGG | + | chr5.3:14430073-14430092 | MS.gene64916:CDS | 30.0% | |
| TAGCACAATCAGTACAAAAA+AGG | + | chr5.3:14429727-14429746 | MS.gene64916:CDS | 30.0% | |
| TAGTATAAAAAGGAGATTGG+AGG | + | chr5.3:14429988-14430007 | MS.gene64916:CDS | 30.0% | |
| TCTTGGCAATATATAACAAG+AGG | - | chr5.3:14431289-14431308 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | - | chr5.3:14430361-14430380 | None:intergenic | 30.0% | |
| TTTGAGCATAAGTGATTTCA+TGG | + | chr5.3:14430663-14430682 | MS.gene64916:CDS | 30.0% | |
| TTTGTTGGAGTAAATCATCA+TGG | + | chr5.3:14430361-14430380 | MS.gene64916:CDS | 30.0% | |
| ! | AAGTAGAAATTTTCGGTCTA+TGG | + | chr5.3:14430036-14430055 | MS.gene64916:CDS | 30.0% |
| ! | CAAAATACTTTTGCATGATG+CGG | + | chr5.3:14430630-14430649 | MS.gene64916:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | + | chr5.3:14430721-14430740 | MS.gene64916:CDS | 30.0% |
| ! | CCAATCTCCTTTTTATACTA+GGG | - | chr5.3:14429988-14430007 | None:intergenic | 30.0% |
| ! | CTTGTTATATATTGCCAAGA+TGG | + | chr5.3:14431289-14431308 | MS.gene64916:CDS | 30.0% |
| ! | GACATGTCAAGAAAGTTTTT+CGG | + | chr5.3:14431497-14431516 | MS.gene64916:CDS | 30.0% |
| ! | TCCAATCTCCTTTTTATACT+AGG | - | chr5.3:14429989-14430008 | None:intergenic | 30.0% |
| !! | TATGCAAGATGTTTAGGTTT+TGG | + | chr5.3:14429701-14429720 | MS.gene64916:CDS | 30.0% |
| !! | TCTATGCTTTGAGAAGAATA+TGG | - | chr5.3:14432037-14432056 | None:intergenic | 30.0% |
| !!! | AGTATGAACGCATTTTTTGA+TGG | + | chr5.3:14430829-14430848 | MS.gene64916:intron | 30.0% |
| !!! | GTCGTTTACGAAATGTTTTT+TGG | + | chr5.3:14430239-14430258 | MS.gene64916:CDS | 30.0% |
| AAGTGATTTCATGGAGAAGT+GGG | + | chr5.3:14430672-14430691 | MS.gene64916:CDS | 35.0% | |
| AATGTATGTGTGTCTTCAGA+TGG | + | chr5.3:14429869-14429888 | MS.gene64916:CDS | 35.0% | |
| AGTACAAAAAAGGGAGATGA+TGG | + | chr5.3:14429737-14429756 | MS.gene64916:CDS | 35.0% | |
| ATTGTGAAAAAGAAGCTTGC+TGG | + | chr5.3:14431636-14431655 | MS.gene64916:CDS | 35.0% | |
| CACTTATCAAAGTCAAGAAG+AGG | + | chr5.3:14431692-14431711 | MS.gene64916:CDS | 35.0% | |
| CCCTAGTATAAAAAGGAGAT+TGG | + | chr5.3:14429985-14430004 | MS.gene64916:CDS | 35.0% | |
| GAAACTACATTGACAAAGTG+AGG | + | chr5.3:14430110-14430129 | MS.gene64916:CDS | 35.0% | |
| GTCAATCACATCAAGATCAA+TGG | - | chr5.3:14431849-14431868 | None:intergenic | 35.0% | |
| GTTATATATTGCCAAGATGG+AGG | + | chr5.3:14431292-14431311 | MS.gene64916:CDS | 35.0% | |
| TAAGTGATTTCATGGAGAAG+TGG | + | chr5.3:14430671-14430690 | MS.gene64916:CDS | 35.0% | |
| TACTTACATTAATCCCAGCT+TGG | - | chr5.3:14430021-14430040 | None:intergenic | 35.0% | |
| TAGCATGAAAACACACTGTA+AGG | + | chr5.3:14429838-14429857 | MS.gene64916:CDS | 35.0% | |
| TCCATCTTGGTCAGTAATTA+TGG | - | chr5.3:14430494-14430513 | None:intergenic | 35.0% | |
| TGAAGAAGCAAATCCGTAAA+AGG | - | chr5.3:14431412-14431431 | None:intergenic | 35.0% | |
| TTAATATCCTTCCTCCATCT+TGG | - | chr5.3:14431306-14431325 | None:intergenic | 35.0% | |
| TTTCTTGGTTGTTCACTACT+TGG | + | chr5.3:14430437-14430456 | MS.gene64916:CDS | 35.0% | |
| ! | CAAAGAGTTTCAAGTAGAAG+TGG | + | chr5.3:14431029-14431048 | MS.gene64916:intron | 35.0% |
| ! | GAGAGTCTACTCAATTTTTC+TGG | - | chr5.3:14430595-14430614 | None:intergenic | 35.0% |
| ! | GTATGTGAGAGACACATTTT+GGG | + | chr5.3:14430777-14430796 | MS.gene64916:CDS | 35.0% |
| ! | TCATGCTTTCTTTGAGAGAA+TGG | + | chr5.3:14431068-14431087 | MS.gene64916:intron | 35.0% |
| ! | TGTATGTGAGAGACACATTT+TGG | + | chr5.3:14430776-14430795 | MS.gene64916:CDS | 35.0% |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | chr5.3:14429833-14429852 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | chr5.3:14429839-14429858 | None:intergenic | 35.0% |
| ! | TTAGAAGCCTTCCTTTTTGA+AGG | - | chr5.3:14431606-14431625 | None:intergenic | 35.0% |
| AATGTGTCTCTCACATACAC+AGG | - | chr5.3:14430775-14430794 | None:intergenic | 40.0% | |
| ACTACATTGACAAAGTGAGG+CGG | + | chr5.3:14430113-14430132 | MS.gene64916:CDS | 40.0% | |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr5.3:14430352-14430371 | None:intergenic | 40.0% | |
| ACTTGGTTAGAATGTATGCG+TGG | + | chr5.3:14430454-14430473 | MS.gene64916:CDS | 40.0% | |
| AGCAATGAAGAATGCAGTTG+AGG | + | chr5.3:14430513-14430532 | MS.gene64916:CDS | 40.0% | |
| AGTATCCTCCTTCGACAATA+GGG | - | chr5.3:14430410-14430429 | None:intergenic | 40.0% | |
| CATTCTTCATTGCTCCATCT+TGG | - | chr5.3:14430507-14430526 | None:intergenic | 40.0% | |
| CTGTGAGCTTAAGAACACAA+AGG | - | chr5.3:14431248-14431267 | None:intergenic | 40.0% | |
| CTTGGTTAGAATGTATGCGT+GGG | + | chr5.3:14430455-14430474 | MS.gene64916:CDS | 40.0% | |
| GCCATAATTACTGACCAAGA+TGG | + | chr5.3:14430490-14430509 | MS.gene64916:CDS | 40.0% | |
| TACTCACATAGCTTCTTGCA+CGG | - | chr5.3:14429790-14429809 | None:intergenic | 40.0% | |
| TAGTATCCTCCTTCGACAAT+AGG | - | chr5.3:14430411-14430430 | None:intergenic | 40.0% | |
| TATATTGCCAAGATGGAGGA+AGG | + | chr5.3:14431296-14431315 | MS.gene64916:CDS | 40.0% | |
| TCTATGGTTGTTGAAGCAAG+TGG | + | chr5.3:14430052-14430071 | MS.gene64916:CDS | 40.0% | |
| TGGTCAGTAATTATGGCTTG+TGG | - | chr5.3:14430487-14430506 | None:intergenic | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr5.3:14430277-14430296 | MS.gene64916:CDS | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr5.3:14430346-14430365 | MS.gene64916:CDS | 40.0% |
| ! | CATCTTTTTCCCCGAATGTA+AGG | - | chr5.3:14430087-14430106 | None:intergenic | 40.0% |
| ! | TGCTTTCTTTGAGAGAATGG+AGG | + | chr5.3:14431071-14431090 | MS.gene64916:intron | 40.0% |
| ! | TGTTAAGTAAGTGGTGTCGA+AGG | - | chr5.3:14430314-14430333 | None:intergenic | 40.0% |
| !! | AAGAAGCTTGCTGGAAAGAA+AGG | + | chr5.3:14431645-14431664 | MS.gene64916:CDS | 40.0% |
| !! | AGTTTTTCGGAGATCACTGA+AGG | + | chr5.3:14431510-14431529 | MS.gene64916:CDS | 40.0% |
| !! | CATTCGTGTGTACTTTTTGC+AGG | + | chr5.3:14432150-14432169 | MS.gene64916:intron | 40.0% |
| !!! | AGTGGTTTTGGTCAATTAGC+CGG | + | chr5.3:14431348-14431367 | MS.gene64916:CDS | 40.0% |
| ACGCTGCAACTCTTCATTTC+CGG | - | chr5.3:14431370-14431389 | None:intergenic | 45.0% | |
| CATGGTCAGTCAGTTCTGTT+AGG | + | chr5.3:14430379-14430398 | MS.gene64916:CDS | 45.0% | |
| CTGTAGCGACTCGAAGTAAA+GGG | + | chr5.3:14431574-14431593 | MS.gene64916:CDS | 45.0% | |
| GTTTGATGAGCGTCATCGTT+GGG | + | chr5.3:14430747-14430766 | MS.gene64916:CDS | 45.0% | |
| TGGAGGTTAATGACCAAGCT+GGG | + | chr5.3:14430005-14430024 | MS.gene64916:CDS | 45.0% | |
| TGTTTGATGAGCGTCATCGT+TGG | + | chr5.3:14430746-14430765 | MS.gene64916:CDS | 45.0% | |
| TTGGAGGTTAATGACCAAGC+TGG | + | chr5.3:14430004-14430023 | MS.gene64916:CDS | 45.0% | |
| ! | AAAGCCTGCGATGCCTTTTA+CGG | + | chr5.3:14431396-14431415 | MS.gene64916:CDS | 45.0% |
| !! | AAATCCGTAAAAGGCATCGC+AGG | - | chr5.3:14431403-14431422 | None:intergenic | 45.0% |
| !! | GAAGCCTTCCTTTTTGAAGG+AGG | - | chr5.3:14431603-14431622 | None:intergenic | 45.0% |
| !!! | AATTTATTTATTTTTATGTA+GGG | + | chr5.3:14431773-14431792 | MS.gene64916:intron | 5.0% |
| !!! | TAATTTATTTATTTTTATGT+AGG | + | chr5.3:14431772-14431791 | MS.gene64916:intron | 5.0% |
| CCTGTAGCGACTCGAAGTAA+AGG | + | chr5.3:14431573-14431592 | MS.gene64916:CDS | 50.0% | |
| CCTTTACTTCGAGTCGCTAC+AGG | - | chr5.3:14431576-14431595 | None:intergenic | 50.0% | |
| GCGTCCTCCTTCAAAAAGGA+AGG | + | chr5.3:14431596-14431615 | MS.gene64916:CDS | 50.0% | |
| TATGCCACAAGCACCATCGA+TGG | - | chr5.3:14430558-14430577 | None:intergenic | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr5.3:14430258-14430277 | MS.gene64916:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr5.3:14430257-14430276 | MS.gene64916:CDS | 50.0% | |
| ! | GTGAGAGACACATTTTGGGC+TGG | + | chr5.3:14430781-14430800 | MS.gene64916:CDS | 50.0% |
| !! | AAGGGCGTCCTCCTTCAAAA+AGG | + | chr5.3:14431592-14431611 | MS.gene64916:CDS | 50.0% |
| AAAGTGAGGCGGCTTCGACT+TGG | + | chr5.3:14430124-14430143 | MS.gene64916:CDS | 55.0% | |
| AAGTGAGGCGGCTTCGACTT+GGG | + | chr5.3:14430125-14430144 | MS.gene64916:CDS | 55.0% | |
| ACCATCGATGGCGAGCTTTC+GGG | - | chr5.3:14430546-14430565 | None:intergenic | 55.0% | |
| AGGTTGCGCCCTATTGTCGA+AGG | + | chr5.3:14430399-14430418 | MS.gene64916:CDS | 55.0% | |
| ATGGCGAGCTTTCGGGAAGA+CGG | - | chr5.3:14430539-14430558 | None:intergenic | 55.0% | |
| CACCATCGATGGCGAGCTTT+CGG | - | chr5.3:14430547-14430566 | None:intergenic | 55.0% | |
| TTGCGCCCTATTGTCGAAGG+AGG | + | chr5.3:14430402-14430421 | MS.gene64916:CDS | 55.0% | |
| CTCGCCATCGATGGTGCTTG+TGG | + | chr5.3:14430551-14430570 | MS.gene64916:CDS | 60.0% | |
| TCCCGAAAGCTCGCCATCGA+TGG | + | chr5.3:14430542-14430561 | MS.gene64916:CDS | 60.0% | |
| !! | AGGCGGCTTCGACTTGGGAC+AGG | + | chr5.3:14430130-14430149 | MS.gene64916:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14429656 | 14432207 | 14429656 | ID=MS.gene64916 |
| chr5.3 | mRNA | 14429656 | 14432207 | 14429656 | ID=MS.gene64916.t1;Parent=MS.gene64916 |
| chr5.3 | exon | 14429656 | 14430829 | 14429656 | ID=MS.gene64916.t1.exon1;Parent=MS.gene64916.t1 |
| chr5.3 | CDS | 14429656 | 14430829 | 14429656 | ID=cds.MS.gene64916.t1;Parent=MS.gene64916.t1 |
| chr5.3 | exon | 14431121 | 14431713 | 14431121 | ID=MS.gene64916.t1.exon2;Parent=MS.gene64916.t1 |
| chr5.3 | CDS | 14431121 | 14431713 | 14431121 | ID=cds.MS.gene64916.t1;Parent=MS.gene64916.t1 |
| chr5.3 | exon | 14431794 | 14431943 | 14431794 | ID=MS.gene64916.t1.exon3;Parent=MS.gene64916.t1 |
| chr5.3 | CDS | 14431794 | 14431943 | 14431794 | ID=cds.MS.gene64916.t1;Parent=MS.gene64916.t1 |
| chr5.3 | exon | 14432031 | 14432087 | 14432031 | ID=MS.gene64916.t1.exon4;Parent=MS.gene64916.t1 |
| chr5.3 | CDS | 14432031 | 14432087 | 14432031 | ID=cds.MS.gene64916.t1;Parent=MS.gene64916.t1 |
| chr5.3 | exon | 14432172 | 14432207 | 14432172 | ID=MS.gene64916.t1.exon5;Parent=MS.gene64916.t1 |
| chr5.3 | CDS | 14432172 | 14432207 | 14432172 | ID=cds.MS.gene64916.t1;Parent=MS.gene64916.t1 |
| Gene Sequence |
| Protein sequence |
