AlfalfaGEDB | MS.gene65017

M. sativa cultivar XinJiangDaYe / MS.gene65017

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65017.t1	XP_024636633.1	78.8	736	18	1	1	598	1	736	0.00E+00	1135.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65017.t1	Q9SWG3	36.1	710	287	7	3	560	8	702	7.3e-120	432.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65017.t1	A0A2K3NBU0	63.0	702	118	3	4	567	3	700	1.2e-245	858.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65017.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65017.t1	MTR_1g008290	69.286	140	40	1	94	233	8	144	7.58e-67	214
MS.gene65017.t1	MTR_5g032260	64.486	107	38	0	68	174	299	405	5.49e-39	148
MS.gene65017.t1	MTR_4g035820	27.960	397	257	10	2	374	33	424	7.71e-31	128
MS.gene65017.t1	MTR_1g070355	27.413	259	166	8	4	248	36	286	4.00e-22	100
MS.gene65017.t1	MTR_5g076070	27.237	257	157	10	25	264	33	276	2.91e-21	94.7
MS.gene65017.t1	MTR_6g051425	24.576	236	154	5	43	264	19	244	3.35e-21	95.5
MS.gene65017.t1	MTR_0402s0040	24.906	265	142	5	41	298	26	240	9.37e-21	96.3
MS.gene65017.t1	MTR_7g446520	28.685	251	149	7	10	251	58	287	1.78e-20	93.6
MS.gene65017.t1	MTR_2g098880	35.849	106	62	1	40	139	60	165	3.75e-18	84.7
MS.gene65017.t1	MTR_2g098880	35.849	106	62	1	40	139	72	177	4.30e-18	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65017.t1	AT4G15090	41.899	358	179	8	217	560	360	702	2.20e-83	278
MS.gene65017.t1	AT4G15090	44.487	263	128	4	3	251	8	266	1.28e-62	221
MS.gene65017.t1	AT4G15090	41.899	358	179	8	217	560	360	702	2.20e-83	278
MS.gene65017.t1	AT4G15090	44.487	263	128	4	3	251	8	266	1.28e-62	221
MS.gene65017.t1	AT4G15090	41.899	358	179	8	217	560	360	702	2.20e-83	278
MS.gene65017.t1	AT4G15090	44.487	263	128	4	3	251	8	266	1.28e-62	221
MS.gene65017.t1	AT4G15090	41.899	358	179	8	217	560	360	702	2.20e-83	278
MS.gene65017.t1	AT4G15090	44.487	263	128	4	3	251	8	266	1.28e-62	221
MS.gene65017.t1	AT4G15090	41.899	358	179	8	217	560	360	702	2.20e-83	278
MS.gene65017.t1	AT4G15090	44.487	263	128	4	3	251	8	266	1.28e-62	221

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Find 91 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAAAGTTGCTTTAC+AGG	0.207491	8.4:+40065048	MS.gene65017:CDS
AAAATCGACAAGGAAAACGT+TGG	0.622612	8.4:+40065646	MS.gene65017:CDS
AAAGAATCTGTGATGGAAAA+TGG	0.261591	8.4:+40064033	MS.gene65017:CDS
AAATCCACGTCCTTGTTTGA+AGG	0.523815	8.4:+40063983	MS.gene65017:CDS
AACAACAATTTGAAGATAAG+TGG	0.469819	8.4:+40064828	MS.gene65017:intron
AACAATGTGCAACTATCAAC+CGG	0.485541	8.4:+40065617	MS.gene65017:CDS
AACAGCTGCATTGCCAAGAA+TGG	0.484562	8.4:+40065944	MS.gene65017:CDS
AACGCCGATCTTTATCTAAA+TGG	0.218779	8.4:-40064268	None:intergenic
AATACCTCAAATGTTCTCAA+TGG	0.509038	8.4:+40065915	MS.gene65017:CDS
AATGGAGAACATTCTATTGA+TGG	0.437522	8.4:+40063699	MS.gene65017:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATGGCTTAGAGCAAT+GGG	+	chr8.4:40064605-40064624	MS.gene65017:intron	30.0%
AATACCTCAAATGTTCTCAA+TGG	+	chr8.4:40065915-40065934	MS.gene65017:CDS	30.0%
AATGAAAGAGGCTATTAAAG+AGG	+	chr8.4:40064670-40064689	MS.gene65017:intron	30.0%
AATGGAGAACATTCTATTGA+TGG	+	chr8.4:40063699-40063718	MS.gene65017:CDS	30.0%
ACAAGGATAATGAAAGAAGA+TGG	+	chr8.4:40065475-40065494	MS.gene65017:CDS	30.0%
ATAATGTGTCATACCATTCT+TGG	-	chr8.4:40065960-40065979	None:intergenic	30.0%
ATATGAAGAACGTGAACATT+GGG	+	chr8.4:40064904-40064923	MS.gene65017:CDS	30.0%
ATGGAGAACATTCTATTGAT+GGG	+	chr8.4:40063700-40063719	MS.gene65017:CDS	30.0%
ATTGACATTTGCTTCTCAAA+AGG	-	chr8.4:40065145-40065164	None:intergenic	30.0%
CAAGGATAATGAAAGAAGAT+GGG	+	chr8.4:40065476-40065495	MS.gene65017:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	40063681	40066077	40063681	ID=MS.gene65017
chr8.4	mRNA	40063681	40066077	40063681	ID=MS.gene65017.t1;Parent=MS.gene65017
chr8.4	exon	40063681	40064428	40063681	ID=MS.gene65017.t1.exon1;Parent=MS.gene65017.t1
chr8.4	CDS	40063681	40064428	40063681	ID=cds.MS.gene65017.t1;Parent=MS.gene65017.t1
chr8.4	exon	40064843	40065795	40064843	ID=MS.gene65017.t1.exon2;Parent=MS.gene65017.t1
chr8.4	CDS	40064843	40065795	40064843	ID=cds.MS.gene65017.t1;Parent=MS.gene65017.t1
chr8.4	exon	40065888	40065965	40065888	ID=MS.gene65017.t1.exon3;Parent=MS.gene65017.t1
chr8.4	CDS	40065888	40065965	40065888	ID=cds.MS.gene65017.t1;Parent=MS.gene65017.t1
chr8.4	exon	40066060	40066077	40066060	ID=MS.gene65017.t1.exon4;Parent=MS.gene65017.t1
chr8.4	CDS	40066060	40066077	40066060	ID=cds.MS.gene65017.t1;Parent=MS.gene65017.t1

Gene Sequence

>MS.gene65017

ATGGAAGTTGTTGATGGGAATGGAGAACATTCTATTGATGGGAATGAAGAGCAAGTTGTCAAGGAGATTGATGACAATGATTCATGTACCGTTGATTTAGAGGCTAACGGTGGTCAAGAACCTAACATTGGAATGGAGTTTGATTCACAAGAAAATGCTTATTCATTCTACACTCATTATGCTAAGTCAGTTGGATTTGGGATATCAATTAAAAATAGTCGTCGTTCAAAGATTTCTAGAGAGTTTATTGATGTAAGTTATGCTTGCACAAGATACGGCAAGAAGCGAGAATCCAGTTCACAAAATCCACGTCCTTGTTTGAAGGTGGGATGTGAGGCTAGTTTACGTGTTAAAAGAATCTGTGATGGAAAATGGATTGTTCATAGCTTCATTAAAGACCACAATCACGAACTTTTTCCAGCATATGCACATTATTTTCCTTGCCATAGAGGAATCAATAAAGCTCAAAAGCATTCTATTGAAACTTTGCACCATGTTGGAGTGAGAACAAGCAAAATTTTTGCCACAATGGCCAAAGAATATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATGTAAGAAACCATTTAGATAAAGATCGGCGTTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGATTGTTTTATACTCATGCAAGAAAAAAATCCAGGATTCTTTTATGCAATTGATATGGATGATGAGGGTCGCATGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAAGACTATCAAGAGTTTGGAGATGTGATTTCATTTGATACTACATATATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGTTACTTGGCTGTGCATTACTCTCAGATGAGACCAAGAACACTTTCATATGGTTGATGAAAATATGGCTTAGAGCAATGGGTGGAAAACCTCCAAATGCAATCATAACTGATCAAGATAGAGCAATGAAAGAGGCTATTAAAGAGGTATTTCCAAATTCTCGACATCGATTTTGTCTTTGGCATATACTTAGAAAGGTGCCTGAGAAGCTTAGTCATGTTTTAAGGGATGACGAAGACTTCATGAGATATCTCAACATATGCATATATAAGTCTTGGTCAAAACAACAATTTGAAGATAAGTGGCATGAAATGGTGGAAAAATTTGATCTATTTGGAGATGATTGGATTCACTCTTTATATGAAGAACGTGAACATTGGGTTCCTGTTTACATGAATGATACATTTTTTGGTGGCTTGTCAACAACTCAAAGATCAGAGAGCATTAATTCTTTTTTTGACAAATATGTATGTAAGAAAACTACATTAAAGGAATTTGTCGAAAAATATAAAGTTGCTTTACAGGATAGAGAAGAGGCGGAAAGGCAAGCTGATTTTAAGACATGGCACAAGCAACCTGTTCTTAGGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATATATACACATGAAATCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTATCTGGATGTCGTATTGTGAAAGAACATAATGATAATCTTACTGTCACTTTTACAATTTTCGACTTTCATAGAAATGACGAGTTTATTGTAGAGTGTGATGTCTCGAAGAAGGAAATATCATGTCTGTGTCGCTTTTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCATTCCAAGCTATTGGTGTCTGTGTTGTCCCATCACACTATATTTTAAGAAGATGGACCAAGGATGTTAGAAGCAAGCATCATACAAGGATAATGAAAGAAGATGGGTGTTCTAGTAAGGAGAGATATGATTCTTTATATCAAAAGGCTATTGAATTTCTCGAAGAAGGATCACTAAGTTTTGAGAGTTACAATTTGTCTTGCCATGCACTTGAAGAAACTTTGAAACAATGTGCAACTATCAACCGGTCTTTGAAAATCGACAAGGAAAACGTTGGTCAGAGCAGTTTACGTGTGAAACTAGTGCGTGATCCTAAAAGAGCAAATACAAAAGGGGCTCCAAGAAGAATAAAGAGTGGGATCGAGAGAGGTCGTAAGAGAACATCTAGTTGTAAAGTAAAAAAGGTTAGAAGATTTTAACTTGATCAAAATTTGTATAATGTTTTTTTTTATTTTAGCATTATTTCTCATTGCTATGTATTTGTTGTGATTTTAAGTCTGCTATTGTCCAAAGAGAAGCAGTAAATACCTCAAATGTTCTCAATGGTGAAGTAACAGCTGCATTGCCAAGAATGGTATGACACATTATTCTTAGGTGATTTAATATTAAGTTAGTAGATACATTTTGAGTTTTCAACTAATTGTCTTTTGTTTTCTTATTTTTCACAGGAAAGTCATCAGGGTTGA

Protein sequence

>MS.gene65017.t1

MEVVDGNGEHSIDGNEEQVVKEIDDNDSCTVDLEANGGQEPNIGMEFDSQENAYSFYTHYAKSVGFGISIKNSRRSKISREFIDVSYACTRYGKKRESSSQNPRPCLKVGCEASLRVKRICDGKWIVHSFIKDHNHELFPAYAHYFPCHRGINKAQKHSIETLHHVGVRTSKIFATMAKEYGGYENIGCLEKDVRNHLDKDRRLALESGDANAMLDCFILMQEKNPGFFYAIDMDDEGRMKNVFWVDAKDKWHEMVEKFDLFGDDWIHSLYEEREHWVPVYMNDTFFGGLSTTQRSESINSFFDKYVCKKTTLKEFVEKYKVALQDREEAERQADFKTWHKQPVLRTPSPFEKQMSMIYTHEIFKKFQVEVLGLSGCRIVKEHNDNLTVTFTIFDFHRNDEFIVECDVSKKEISCLCRFFEYNGYLCRHSLMAFQAIGVCVVPSHYILRRWTKDVRSKHHTRIMKEDGCSSKERYDSLYQKAIEFLEEGSLSFESYNLSCHALEETLKQCATINRSLKIDKENVGQSSLRVKLVRDPKRANTKGAPRRIKSGIERGRKRTSSCKVKKSAIVQREAVNTSNVLNGEVTAALPRMESHQG