AlfalfaGEDB | MS.gene65055

M. sativa cultivar XinJiangDaYe / MS.gene65055

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65055.t1	XP_003622913.2	89	228	25	0	1	228	430	657	8.40E-108	399.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65055.t1	Q9FYR7	54.2	240	94	4	1	227	403	639	7.5e-65	248.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65055.t1	G7L175	89.0	228	25	0	1	228	430	657	6.0e-108	399.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65055.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65055.t1	MTR_7g057230	89.035	228	25	0	1	228	430	657	2.93e-144	417
MS.gene65055.t1	MTR_6g047750	55.508	236	90	3	2	227	431	661	1.69e-82	259
MS.gene65055.t1	MTR_3g089055	46.262	214	113	2	16	227	351	564	3.43e-60	198
MS.gene65055.t1	MTR_3g089055	46.262	214	113	2	16	227	356	569	4.26e-60	198
MS.gene65055.t1	MTR_1g029420	46.445	211	111	2	19	227	381	591	4.90e-56	187
MS.gene65055.t1	MTR_4g133660	42.991	214	120	2	16	227	329	542	4.89e-52	176
MS.gene65055.t1	MTR_2g082090	41.667	216	124	2	14	227	363	578	3.18e-49	169
MS.gene65055.t1	MTR_3g056110	38.222	225	135	3	6	227	318	541	1.19e-45	159
MS.gene65055.t1	MTR_5g097480	41.546	207	119	2	23	227	337	543	1.29e-45	159
MS.gene65055.t1	MTR_2g026250	39.336	211	126	2	19	227	385	595	2.21e-45	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65055.t1	AT5G52510	54.167	240	94	4	1	227	403	639	7.59e-81	254
MS.gene65055.t1	AT1G21450	42.326	215	121	2	16	227	378	592	5.59e-50	172
MS.gene65055.t1	AT5G48150	43.128	211	118	2	19	227	279	489	6.30e-48	164
MS.gene65055.t1	AT5G48150	43.128	211	118	2	19	227	279	489	6.30e-48	164
MS.gene65055.t1	AT5G48150	43.128	211	118	2	19	227	279	489	6.30e-48	164
MS.gene65055.t1	AT5G48150	43.128	211	118	2	19	227	279	489	6.30e-48	164
MS.gene65055.t1	AT2G04890	38.596	228	135	3	2	227	188	412	1.17e-47	162
MS.gene65055.t1	AT1G50600	41.121	214	124	2	16	227	312	525	4.12e-47	163
MS.gene65055.t1	AT1G50600	41.706	211	121	2	19	227	386	596	8.25e-47	163
MS.gene65055.t1	AT1G50600	41.706	211	121	2	19	227	390	600	9.20e-47	163

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Find 42 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTGAGAGTTTAGGAATC+GGG	0.432375	7.1:+43955786	MS.gene65055:CDS
AAGGGAGGGATCGTGTGGGA+AGG	0.540426	7.1:+43956179	MS.gene65055:CDS
ACCAGACGAGAGCGTGTCAA+CGG	0.534077	7.1:+43955919	MS.gene65055:CDS
ACTGTGCATGAAGAGAATGG+TGG	0.760237	7.1:+43956319	MS.gene65055:CDS
AGAAATGCAGTTGCTTGTGA+AGG	0.600882	7.1:+43956160	MS.gene65055:CDS
AGAATCTATTGAATTCGCGA+TGG	0.614659	7.1:+43956084	MS.gene65055:CDS
AGCACCATTAGTTTCACGCG+TGG	0.655950	7.1:+43956030	MS.gene65055:CDS
ATAACTTCAAGACTCATCCA+AGG	0.671136	7.1:+43956286	MS.gene65055:CDS
ATGCAGTTGCTTGTGAAGGG+AGG	0.602267	7.1:+43956164	MS.gene65055:CDS
ATGGTGGAGTTTGCTTTGGT+TGG	0.406060	7.1:+43956335	MS.gene65055:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGATTAAAGCTTGAAAA+AGG	+	chr7.1:43956121-43956140	MS.gene65055:CDS	30.0%
TTAGATTAAACCTGATGAGT+CGG	+	chr7.1:43956248-43956267	MS.gene65055:CDS	30.0%
AGAATCTATTGAATTCGCGA+TGG	+	chr7.1:43956084-43956103	MS.gene65055:CDS	35.0%
ATAACTTCAAGACTCATCCA+AGG	+	chr7.1:43956286-43956305	MS.gene65055:CDS	35.0%
ATTACTGTGCATGAAGAGAA+TGG	+	chr7.1:43956316-43956335	MS.gene65055:CDS	35.0%
AAGCTGAGAGTTTAGGAATC+GGG	+	chr7.1:43955786-43955805	MS.gene65055:CDS	40.0%
AGAAATGCAGTTGCTTGTGA+AGG	+	chr7.1:43956160-43956179	MS.gene65055:CDS	40.0%
CAAAACTGTGACAATGCTTG+GGG	-	chr7.1:43955987-43956006	None:intergenic	40.0%
CCAAAACTGTGACAATGCTT+GGG	-	chr7.1:43955988-43956007	None:intergenic	40.0%
GAAATGCAGTTGCTTGTGAA+GGG	+	chr7.1:43956161-43956180	MS.gene65055:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	43955710	43956396	43955710	ID=MS.gene65055
chr7.1	mRNA	43955710	43956396	43955710	ID=MS.gene65055.t1;Parent=MS.gene65055
chr7.1	exon	43955710	43956396	43955710	ID=MS.gene65055.t1.exon1;Parent=MS.gene65055.t1
chr7.1	CDS	43955710	43956396	43955710	ID=cds.MS.gene65055.t1;Parent=MS.gene65055.t1

Gene Sequence

>MS.gene65055

ATGTTGAAGATCACGACTGTGACGGTGAACGTCGACAACAAGAATTTTAAAACCATTGGAGAACTTTTGGGTAGAGAAGCTGAGAGTTTAGGAATCGGGTTTGAATTCAAACCAGTGAACCTAAATCTCACCGAACTAACTCGCGAGTCATTGAATTGTGACTCAGACGATATTCTTGCTGTGAATTTTGCGTTCAATCTATACAAAATACCAGACGAGAGCGTGTCAACGGAGAATCCACGTGACACGCTTCTTCGTCAAGTGAAATCACTCTCCCCAAGCATTGTCACAGTTTTGGAGCAAGAGATGAATACAAACACAGCACCATTAGTTTCACGCGTGGCTGGAACTTGTTCTTATTACAACACATTGCTAGAATCTATTGAATTCGCGATGGATCATGATAGTTATGAGAGATTAAAGCTTGAAAAAGGACTGAGCATGAAGATGAGAAATGCAGTTGCTTGTGAAGGGAGGGATCGTGTGGGAAGGTGTGAAGTTTTTGGCAAGTGGCGTGCACGCATGAGCATGGCTGGGTTTAGATTAAACCTGATGAGTCGGAAAGTTACTGAGTCGATAACTTCAAGACTCATCCAAGGTAGCAGAATTACTGTGCATGAAGAGAATGGTGGAGTTTGCTTTGGTTGGATGGGAAGAACTCTCACTGTTGCATCTTCTTGGTGTTAA

Protein sequence

>MS.gene65055.t1

MLKITTVTVNVDNKNFKTIGELLGREAESLGIGFEFKPVNLNLTELTRESLNCDSDDILAVNFAFNLYKIPDESVSTENPRDTLLRQVKSLSPSIVTVLEQEMNTNTAPLVSRVAGTCSYYNTLLESIEFAMDHDSYERLKLEKGLSMKMRNAVACEGRDRVGRCEVFGKWRARMSMAGFRLNLMSRKVTESITSRLIQGSRITVHEENGGVCFGWMGRTLTVASSWC