AlfalfaGEDB | MS.gene65059

M. sativa cultivar XinJiangDaYe / MS.gene65059

KEGG: K16241
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65059.t1	XP_003622910.1	95.9	171	7	0	1	171	1	171	1.70E-81	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65059.t1	Q8W191	77.1	83	19	0	87	169	67	149	5.1e-26	119.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65059.t1	G7L172	95.9	171	7	0	1	171	1	171	1.2e-81	312.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65059.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65059.t1	MTR_7g057160	95.906	171	7	0	1	171	1	171	1.66e-98	281
MS.gene65059.t1	MTR_3g436010	46.154	156	78	1	16	171	169	318	3.22e-33	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65059.t1	AT3G17609	60.000	130	47	2	39	167	22	147	9.79e-44	142
MS.gene65059.t1	AT3G17609	61.157	121	42	2	48	167	2	118	6.45e-41	134
MS.gene65059.t1	AT3G17609	74.444	90	22	1	79	167	44	133	6.76e-40	132
MS.gene65059.t1	AT3G17609	74.444	90	22	1	79	167	43	132	8.07e-40	132
MS.gene65059.t1	AT5G11260	47.445	137	55	3	31	161	26	151	3.19e-32	113
MS.gene65059.t1	AT5G11260	47.368	133	53	3	31	157	26	147	1.71e-29	107

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Find 39 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGATGAGAGCAATGA+AGG	0.515891	7.1:-43916524	MS.gene65059:CDS
AAATAGGTTGCTAAGGAATA+GGG	0.428080	7.1:-43916827	MS.gene65059:intron
AATCTATGTGGAGGCATAGG+AGG	0.581180	7.1:+43918388	None:intergenic
ACTGATGCTCAACTTCAAGC+AGG	0.591244	7.1:-43917274	MS.gene65059:CDS
AGCCAATGATACTGAGATGA+AGG	0.496590	7.1:-43918464	MS.gene65059:CDS
AGGAACATAGACGTCTCAAA+AGG	0.535376	7.1:-43917210	MS.gene65059:intron
ATGAAGGAAGCTGCAACAAC+TGG	0.409191	7.1:-43918448	MS.gene65059:CDS
CAAATAGGTTGCTAAGGAAT+AGG	0.306771	7.1:-43916828	MS.gene65059:intron
CAACTTCAAGCAGGCTTCCC+CGG	0.470731	7.1:-43917265	MS.gene65059:CDS
CACTTACCAAATCTATGTGG+AGG	0.634191	7.1:+43918379	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGGTTGCTAAGGAATA+GGG	-	chr7.1:43918171-43918190	MS.gene65059:intron	30.0%
AATAGTGACTATAGAGTGTA+AGG	+	chr7.1:43917848-43917867	None:intergenic	30.0%
AATCTTGTAAGTTTGGACTT+TGG	+	chr7.1:43916800-43916819	None:intergenic	30.0%
ACATTAACATGTGCTAACAT+TGG	+	chr7.1:43917348-43917367	None:intergenic	30.0%
ATGATTATCGATCATTGTGA+AGG	+	chr7.1:43917172-43917191	None:intergenic	30.0%
GTCTGACTTTACTTATCTTT+CGG	-	chr7.1:43918100-43918119	MS.gene65059:intron	30.0%
GTTCAGATTATGTTACCTTT+CGG	+	chr7.1:43918330-43918349	None:intergenic	30.0%
ATAGACGTCTCAAAAGGTAA+GGG	-	chr7.1:43917794-43917813	MS.gene65059:intron	35.0%
ATTATCGATCATTGTGAAGG+TGG	+	chr7.1:43917169-43917188	None:intergenic	35.0%
CAAATAGGTTGCTAAGGAAT+AGG	-	chr7.1:43918170-43918189	MS.gene65059:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	43916520	43918500	43916520	ID=MS.gene65059
chr7.1	mRNA	43916520	43918500	43916520	ID=MS.gene65059.t1;Parent=MS.gene65059
chr7.1	exon	43918386	43918500	43918386	ID=MS.gene65059.t1.exon1;Parent=MS.gene65059.t1
chr7.1	CDS	43918386	43918500	43918386	ID=cds.MS.gene65059.t1;Parent=MS.gene65059.t1
chr7.1	exon	43917211	43917406	43917211	ID=MS.gene65059.t1.exon2;Parent=MS.gene65059.t1
chr7.1	CDS	43917211	43917406	43917211	ID=cds.MS.gene65059.t1;Parent=MS.gene65059.t1
chr7.1	exon	43916687	43916843	43916687	ID=MS.gene65059.t1.exon3;Parent=MS.gene65059.t1
chr7.1	CDS	43916687	43916843	43916687	ID=cds.MS.gene65059.t1;Parent=MS.gene65059.t1
chr7.1	exon	43916520	43916567	43916520	ID=MS.gene65059.t1.exon4;Parent=MS.gene65059.t1
chr7.1	CDS	43916520	43916567	43916520	ID=cds.MS.gene65059.t1;Parent=MS.gene65059.t1

Gene Sequence

>MS.gene65059

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACTGGAGCACCTTCATCTTCATCTTCTTCATGGAGTAGGTTACCTCCTATGCCTCCACATAGATTTGGTAAGTGTCATTTTCAATTTTTTTTTAATTAGTTTATTTTATGCTGAAGTTTTTTGACTCATATTTTATCCTCAAGTTAAGGTCTTTTATTTTATTTTATTTTTGACATAATCCTAAGTCAAGAGCCTATCAATATTTAATTTAAAAAAATGATTAACTAATCCAAAGTCCAAACTTACAAGATTCTTCATAAAGTTTGTCAAAACAAAAAAAATATATTAAGTATATTGTTTTTTTTTTTTTTTTAAGAATATTAAGTATATTGTTGGATTCCGATCATTTAAAAACAACTTGTTTCATGAAAAGTAAAGGTATATATATAATATAAGTTGGTCCATATTAAGGTGCCCTTATAATATACACACGCATATATTAAATTGGTCTAACATTCTACCCGTTAAATTTTTATTTAACAATTATACTTACACAGCATCATTCTTTTTAGATATGATTGAATGCATGTATAAACCGTTTTTACATCAACAATTTGACAAATTTAGATTATCCACAATATCATATCACAAAGTTTATCCACCTTCACAATGATCGATAATCATTAGATTGAGATCGAACGATCTAGATTTCAAACTTATTTTAACTTAAAAAAATAATCAAAATTTGCATTGAATTTCGGAGCTCCAATCTAGATCCAACTGTCACCTGAGGGAGTGAATGCACGAGATTGCGAACTACAGACAATTCAAATTTGGCCAATGTTAGCACATGTTAATGTACTCGAAATATAAAAATTCGTATGTTCAACTTTTTAAAATTCAAAATATTGTTTTTATCAATGCAAAATTGTTACTATATATTAGGTTCTTTAACATTAGTACACAAGTTAGTTATAATGACCCTTCAAATTTTAATTTGACATTGTATGCCAATTCAATTTAGTCCATATTAAACGTGACTTGTTTTGTTTTGACAATACTAAATATGTCATGTTAATAAGTCATGATTTTTTTACAAATTCCAGACGATAGCGATGAAGATCTGTTCGAAGTTCCAGACGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACTGATGCTCAACTTCAAGCAGGCTTCCCCGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTAAGGGACACAAGTTAACACAAATTTTAGCTATACCTTACACTCTATAGTCACTATTATAAACAAACAACTATTTTTTAAATTCATTGAATAACTGATGTATTTTGTATATAATATAGACTATTGTATTAATTTCTACATTAAATTATCAAACTTTGTCACTTTAAGAAGATTCCGATACATATTACAATTATAATGTTATTCAAGAGTAATTAAGTTATTGAACTCAAACGATTGTTGAACTTCGGTCAAAGACGAATCATTCAGAATACTTAATGAGAACAATTTTAGTCTGACTTTACTTATCTTTCGGCAGAACTTCAGATTAAACTATCTAAAACTAATAAATGACTTGTGTTACAAATAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCTCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACATATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTAACATAATCTGAACTAAATATGTTTTAACAAATTGTTTGTCACTTACTATTTACTATAGAATTATATAACATCATGTTGATCAAATGGAAATTTATTCGATGGTTTTACTTGTACAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>MS.gene65059.t1

MSLSRANDTEMKEAATTGAPSSSSSSWSRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEEHISTLTNENAMLRKVLMNTRPKVDESNEG