AlfalfaGEDB | MS.gene65148

M. sativa cultivar XinJiangDaYe / MS.gene65148

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65148.t1	XP_013448812.1	85	353	48	2	1	353	1	348	1.70E-115	426

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65148.t1	Q9LZ56	52.4	145	42	4	1	122	1	141	4.9e-31	136.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65148.t1	A0A072TZB1	85.0	353	48	2	1	353	1	348	1.2e-115	426.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65148.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65148.t1	MTR_7g059400	92.068	353	23	2	1	353	1	348	0.0	552
MS.gene65148.t1	MTR_4g022370	48.303	383	125	16	1	340	1	353	2.51e-88	270
MS.gene65148.t1	MTR_4g063780	43.266	349	160	12	1	329	1	331	8.28e-72	227
MS.gene65148.t1	MTR_2g096740	40.357	280	107	10	1	260	1	240	3.56e-50	170
MS.gene65148.t1	MTR_7g024670	55.479	146	57	4	1	142	1	142	1.46e-44	157
MS.gene65148.t1	MTR_2g096740	40.076	262	118	11	1	260	1	225	3.20e-44	154
MS.gene65148.t1	MTR_8g479350	68.421	76	23	1	77	152	69	143	1.98e-31	121
MS.gene65148.t1	MTR_3g090430	63.750	80	29	0	57	136	32	111	1.40e-30	119
MS.gene65148.t1	MTR_3g091820	66.667	75	21	1	57	131	28	98	7.03e-30	116
MS.gene65148.t1	MTR_5g031440	59.633	109	39	1	73	181	40	143	1.36e-29	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65148.t1	AT3G55370	38.320	381	156	18	1	338	1	345	1.49e-52	177
MS.gene65148.t1	AT3G55370	38.736	364	147	17	1	338	1	314	1.71e-51	174
MS.gene65148.t1	AT3G55370	40.645	310	123	14	48	338	92	359	1.31e-46	162
MS.gene65148.t1	AT2G37590	40.217	276	108	9	1	240	1	255	2.74e-45	158
MS.gene65148.t1	AT5G02460	86.842	76	10	0	55	130	74	149	7.66e-44	156
MS.gene65148.t1	AT1G07640	73.418	79	21	0	58	136	3	81	9.79e-37	134
MS.gene65148.t1	AT1G07640	73.418	79	21	0	58	136	59	137	1.45e-36	135
MS.gene65148.t1	AT1G07640	73.418	79	21	0	58	136	67	145	1.89e-36	135
MS.gene65148.t1	AT2G28810	46.711	152	49	6	1	127	1	145	2.08e-34	129
MS.gene65148.t1	AT5G60200	69.880	83	22	1	73	152	52	134	4.12e-34	126

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Find 110 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGCCATGAATCTCAT+CGG	0.638198	7.1:+42045952	None:intergenic
AAATAATTCTAGTGTGAAAA+TGG	0.280136	7.1:-42045599	MS.gene65148:CDS
AACGGTGGTGTCAACGGTGG+TGG	0.514797	7.1:-42045811	MS.gene65148:CDS
AAGGGAAATTGATGAGTTTG+TGG	0.457842	7.1:+42045742	None:intergenic
AAGTCTCCAACACCTCCCAT+TGG	0.579899	7.1:+42045874	None:intergenic
AATCAATCTAGACAATTCTT+GGG	0.469852	7.1:-42045571	MS.gene65148:CDS
AATCTCATCGGTGGTGGCGT+TGG	0.416328	7.1:+42045964	None:intergenic
AATGATCAATCCCATGCGTA+TGG	0.649437	7.1:-42045643	MS.gene65148:CDS
ACACCATCGCAACCTCATGG+AGG	0.720835	7.1:-42046312	MS.gene65148:CDS
ACCAGGTTCGATGGCAGATA+GGG	0.488883	7.1:-42046280	MS.gene65148:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGAAATAGGACTAAACTA+TGG	-	chr7.1:42046113-42046132	MS.gene65148:CDS	30.0%
AGTTTAGTCCTATTTCACTT+AGG	+	chr7.1:42046112-42046131	None:intergenic	30.0%
ATCAACAGGTAAATCAACAA+GGG	-	chr7.1:42045454-42045473	MS.gene65148:CDS	30.0%
CTACTACAAATTCCAACTAT+AGG	-	chr7.1:42046606-42046625	MS.gene65148:CDS	30.0%
GAATCAATCTAGACAATTCT+TGG	-	chr7.1:42046448-42046467	MS.gene65148:intron	30.0%
GGAGACTTAAATTTCCATAT+CGG	-	chr7.1:42046161-42046180	MS.gene65148:CDS	30.0%
AACCATCACAAAAATGTCCA+AGG	-	chr7.1:42045790-42045809	MS.gene65148:CDS	35.0%
AAGGGAAATTGATGAGTTTG+TGG	+	chr7.1:42046281-42046300	None:intergenic	35.0%
CATCAACAGGTAAATCAACA+AGG	-	chr7.1:42045453-42045472	MS.gene65148:CDS	35.0%
GGATTGTTGTATCCATTTGA+AGG	-	chr7.1:42046332-42046351	MS.gene65148:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	42045408	42046634	42045408	ID=MS.gene65148
chr7.1	mRNA	42045408	42046634	42045408	ID=MS.gene65148.t1;Parent=MS.gene65148
chr7.1	exon	42046581	42046634	42046581	ID=MS.gene65148.t1.exon1;Parent=MS.gene65148.t1
chr7.1	CDS	42046581	42046634	42046581	ID=cds.MS.gene65148.t1;Parent=MS.gene65148.t1
chr7.1	exon	42045408	42046415	42045408	ID=MS.gene65148.t1.exon2;Parent=MS.gene65148.t1
chr7.1	CDS	42045408	42046415	42045408	ID=cds.MS.gene65148.t1;Parent=MS.gene65148.t1

Gene Sequence

>MS.gene65148

ATGGTTTATACTTCTCTCCCACCATATATGGATCCAGCCAACTGGCATCAACAGGTAAATCAACAAGGGTTCTTCAATTAGGTTTCAAAAAGAAAGAAAAAAAAATAAACTCAAAAGATAAATATTCGAGCTTTACTTTTGTTTATACCCTTCTCTTGAATATACCAAATATTTGATTTTATGTATCTTTACCATTAATTTTTATTTCCTTTTTTGCAGCAACAAAATCATCAAGTGGCCAACACTAGTGTCAACAGTCCTCTACTTATTCCACCACCACAGCCTCAACCATCGAACCTGACACCATCGCAACCTCATGGAGGCTCGATCAGACCAGGTTCGATGGCAGATAGGGCAAGGATGGCAAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTACAACAACTATAGTCTCTCGCAGCCACGCCACTTCTGCAAGGCTTGTCGAAGGTATTGGACAAAAGGTGGTGCCCTTAGAAGTGTCCCGGTTGGAGGTGGTTGTCGAAGAAACAAAAGGTCTAAATCAAGCAGCAACAACACCTCCAAGTCGCCGGCAAGCTCAGACCGCCAAACTAGCTCTGCAAACAACTCTCCTGCGGTACTCAGTTCCCCAACGCCACCACCGATGAGATTCATGGCTCCTTTGCATCATCTAGGTGATCACCTAAGTGAAATAGGACTAAACTATGGTTTTTCTACTCCAATGGGAGGTGTTGGAGACTTAAATTTCCATATCGGAAGCTCTTTAGGTGGAGGCGTTGGTAACGGTGGTGTCAACGGTGGTGGTTCTACTTCGATTTTACCTGTTGGCAATTTTGAGCAATGGAGGATGCCACAAACTCATCAATTTCCCTTCTTGTCAACTTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTAGCGGTGGTGGTGCTAATGATCAATCCCATGCGTATGGTGGTGTGTCTAAGGTATTATCAAATAATTCTAGTGTGAAAATGGAAGAGAATCAATCTAGACAATTCTTGGGAATGATCAACAAAAACAACATCAATAATAATAATAATAATCCTAATAGTGAACAATATTGGAATGCTTCTGCTGGTGGTGGTGCTACTAATTCACCTTGGACAGATCTTTCTACAGCTTATAACACTTCTTCAGCTACTACAAATTCCAACTATAGGACATAA

Protein sequence

>MS.gene65148.t1

MVYTSLPPYMDPANWHQQQQNHQVANTSVNSPLLIPPPQPQPSNLTPSQPHGGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTKGGALRSVPVGGGCRRNKRSKSSSNNTSKSPASSDRQTSSANNSPAVLSSPTPPPMRFMAPLHHLGDHLSEIGLNYGFSTPMGGVGDLNFHIGSSLGGGVGNGGVNGGGSTSILPVGNFEQWRMPQTHQFPFLSTLEASSSHGLLYPFEGGGSGGGANDQSHAYGGVSKVLSNNSSVKMEENQSRQFLGMINKNNINNNNNNPNSEQYWNASAGGGATNSPWTDLSTAYNTSSATTNSNYRT