AlfalfaGEDB | MS.gene65156

M. sativa cultivar XinJiangDaYe / MS.gene65156

KEGG: K15148
GO: GO:0003674 GO:0003712 GO:0005575 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF05983.14 PF07727.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65156.t1	XP_020227398.1	88.6	123	14	0	148	270	46	168	2.00E-52	216.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65156.t1	Q9LYW3	74.6	122	31	0	148	269	46	167	1.2e-45	184.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65156.t1	A0A151SGW3	88.6	123	14	0	148	270	46	168	1.5e-52	216.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65156.t1	TR	MED7

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65156.t1	MTR_6g471120	87.805	123	15	0	148	270	46	168	6.00e-74	223
MS.gene65156.t1	MTR_2g094720	86.992	123	16	0	148	270	46	168	2.98e-73	221

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	46	167	7.45e-62	192
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	46	167	7.45e-62	192
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	46	167	7.45e-62	192
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	46	167	7.45e-62	192
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	46	167	7.45e-62	192
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	46	167	7.45e-62	192
MS.gene65156.t1	AT5G03500	74.590	122	31	148	269	56	177	1.20e-61	192
MS.gene65156.t1	AT5G03220	74.590	122	31	148	269	46	167	1.42e-61	192

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Find 44 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAGCGTACCAACATT+CGG	0.494584	7.1:-41825164	None:intergenic
AAATTCATTGCATCCTCATC+AGG	0.403386	7.1:+41826228	MS.gene65156:CDS
AAGCAACACCACCAGTCCTG+AGG	0.680657	7.1:+41821664	MS.gene65156:CDS
AAGCCGTAGAAGACATAAAG+AGG	0.531060	7.1:+41826421	MS.gene65156:CDS
ACATTGGAGAACTGCTTGAA+AGG	0.554627	7.1:+41822549	MS.gene65156:CDS
ACCAAGCTTGGAAGAACAAG+GGG	0.615522	7.1:+41825118	MS.gene65156:CDS
ACCCCTTGTTCTTCCAAGCT+TGG	0.428579	7.1:-41825119	None:intergenic
ACTATCTGTTTGAATTCAGT+AGG	0.551792	7.1:-41822659	None:intergenic
ACTCTTCTTGCATACTGTGA+TGG	0.527495	7.1:-41826163	None:intergenic
AGAACTGCAACTACACATTT+TGG	0.235567	7.1:+41826114	MS.gene65156:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAACCTTTATGCAAGG+TGG	+	chr7.1:41824845-41824864	MS.gene65156:intron	30.0%
AAGCAATTCAAACTGATGTT+TGG	+	chr7.1:41821817-41821836	MS.gene65156:intron	30.0%
AATCACTCACATTATGACAT+GGG	-	chr7.1:41825991-41826010	None:intergenic	30.0%
AATGCTAAATGTCAGGATTA+TGG	+	chr7.1:41823328-41823347	MS.gene65156:intron	30.0%
ACAAGAACAAAAGATTACCT+AGG	-	chr7.1:41826490-41826509	None:intergenic	30.0%
ACTATCTGTTTGAATTCAGT+AGG	-	chr7.1:41822662-41822681	None:intergenic	30.0%
ACTGAATTCAAACAGATAGT+AGG	+	chr7.1:41822662-41822681	MS.gene65156:intron	30.0%
AGAAAACTATAGATGTCAAG+TGG	+	chr7.1:41821916-41821935	MS.gene65156:intron	30.0%
AGAAGATTTAATACCTGATG+AGG	-	chr7.1:41826244-41826263	None:intergenic	30.0%
AGATAAAAATCATGCGTAGA+TGG	-	chr7.1:41824305-41824324	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	41821600	41827181	41821600	ID=MS.gene65156
chr7.1	mRNA	41821600	41827181	41821600	ID=MS.gene65156.t1;Parent=MS.gene65156
chr7.1	exon	41821600	41821762	41821600	ID=MS.gene65156.t1.exon1;Parent=MS.gene65156.t1
chr7.1	CDS	41821600	41821762	41821600	ID=cds.MS.gene65156.t1;Parent=MS.gene65156.t1
chr7.1	exon	41822402	41822679	41822402	ID=MS.gene65156.t1.exon2;Parent=MS.gene65156.t1
chr7.1	CDS	41822402	41822679	41822402	ID=cds.MS.gene65156.t1;Parent=MS.gene65156.t1
chr7.1	exon	41825104	41825173	41825104	ID=MS.gene65156.t1.exon3;Parent=MS.gene65156.t1
chr7.1	CDS	41825104	41825173	41825104	ID=cds.MS.gene65156.t1;Parent=MS.gene65156.t1
chr7.1	exon	41826083	41826249	41826083	ID=MS.gene65156.t1.exon4;Parent=MS.gene65156.t1
chr7.1	CDS	41826083	41826249	41826083	ID=cds.MS.gene65156.t1;Parent=MS.gene65156.t1
chr7.1	exon	41826369	41826442	41826369	ID=MS.gene65156.t1.exon5;Parent=MS.gene65156.t1
chr7.1	CDS	41826369	41826442	41826369	ID=cds.MS.gene65156.t1;Parent=MS.gene65156.t1
chr7.1	exon	41827121	41827181	41827121	ID=MS.gene65156.t1.exon6;Parent=MS.gene65156.t1
chr7.1	CDS	41827121	41827181	41827121	ID=cds.MS.gene65156.t1;Parent=MS.gene65156.t1

Gene Sequence

>MS.gene65156

ATGGAGGCAGCTCATGATGATGCAGCAGTTGTAGCAGACTCTGATATTGAATCTAATGATGATCAAGCAACACCACCAGTCCTGAGGCCACAAAGAAACAGAAACATCCCAAGCAGATTGGAAGATTGTGAGATACTTCCTGATAGTGCAGTGAATAATGAAGGTGAACTTATTCATTTTGCATTACTAGCAGATACAGAACCTCTAAACTACAAAGAAGCAATTCAAACTGATGTTTGGAAGAAAGCTATCGTTGAAGAAATCAAAGCTATTGAGAAGAATAACACCTGGAAACTTGTTGAGCTACCTGACAAGAAGAAAACTATAGATGTCAAGTGGATTTTCAAGGTGAAACTGAATCCTGATGGGTCAGTATCTAAGTACAAAGCAAGATTGGTTGCTAGGGGTTTCCTGCAAAGATATGGTGTTGACTATAATGAGGTATTTGCTCCAGTTGCTAGACTAGAGACAATAAGATTGGTGGTGGCACTTGCAAGTAGCAGAAACTGGTCACTATCACACCTGGATGTAAAATCAGCATTCCTGAATGGACCTTTGGATGAAGATGTGTATGTTACACAACCACCAGGATTTGAAGTAAATGGGAAGAAGCACATGGTGTACAAGCTTCATAAAGCACTATATGGCCTGAAACAAGCACCTATAGCATGGAATAAGAGGATTGATCAGTTCCTACTTCAAACTGGCTTCAGGAAATGCAAAGCAGAATATGGTATGTATGTTCAGAAACTAAGTGATGGTAGCATAACCATAATTTGTCTATATGTAGATGATTTACTAGTGACTAGAAACAATCAAAGTGAGATTGATAAATTCAAGCACACTATGAAGAGTGAGTTTGAAATGACTGATTTGGGAAAGCTATCATATTTTCTTGGATTTGAATTCACAACCAGCAAAGCAGTCATAGTGATGCATCAGCAGATGTACATTGGAGAACTGCTTGAAAGGTTTCAAATGACTGATTGCAATATTGCAACCAATCCATCTGAAACAAATGCAAAGCTGGATGAGTGTAAAACTGAAGAAAAGGTGGAACCTACTGAATTCAAACAGATAGTAGGATCACTGAGATACTTACGCAATAGCAGGCCAGATATATGCTTTGCAGTGAGTATCATCAGTAGATTCATGAATGATCCAAGAAAGTCTCATCTTACTGCAGCTAAAAGAGTATTGAGATATGTGAAAGGCACACTGAAGTATGCCTACTGTTCCCAACTGGTAACAAAGAAGGAGAAGCTGAATTAGAGGGATACTCTGATTCAGATTGGTGTGGAGATAGACTGGATAGAAAAAGCACTTCTGGCTACCTATTCAAGTTCAATGGTGCTGCAATCTCATGGTGCACTAAGAAACAACCAGTCACTGCTCTATCCTCATGTGAAGCTGAGTACATTGTTGGTATATTTGCAGCATGTCAAGCAATATGGCTTGACAATGTGATGAAGGAACTTAACTGTGAAGTGAAGAAGCCACTGAAGCTGGACATTGATAACAGATCAGCCATCAATTTGGCAAAGAATCCTATTGCACATGGCAGAAGCAAGCACATAGAGACCAGATTCCACTTCATCAGGGAACAAGTCTCAAAAGGAATGATTGAAGTGGAGTATTGTCCTACTGAAGCTCAACTTGGAGATGGTTTCACAAAGGCCTTGAAGATTGACAGATTCAGTTGCTTAAGAGACAAGCTAGGTCTCATAGAATGCTAAATGTCAGGATTATGGATTAAGAGGGGTGTATTAGTTTGTGTTTTAATCCATAATCATGATTAGCAAATACTTAAGAGTTTAGTTTTGTTACAGAGATTGTTTAGTTTGTTACAAAGTTTTAACAGCTAGTTACAAAGATTTAGTAGTTAGTTACAAGAGACTTAATCTCTAAGTCATTGTATATATATAAATGCTTGTAACTCTTTCATAATGATGTAAATACAATTTTCATTCAATAATTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAAACAATAACAAACTCATCATCACCTATAGCAACTTCATCTTCTCCATCGAAACCCTAACCCTAGCTATCAGAGATTGCTTGCGCACCAAGAAACCACTGCTGCGCTAACAATACGCTTATCATAAGCTATTTGTATAGTAAAATTATCTGTTTATAAGCTATCATAAGTTGAGAAGACCCATAAACCCACTGCCTTATGGTTTTGGGTAAAAGTGTGATGTCTCTTCTCACTTGTATGGTTGCTCTAAGCCCAGTGTAGATGATCCCTTAGGTTCCCCTCGTGACCCAACATTTTGAAATTGATTAGATGACACGAAAAAATGGAAGTCGCTCGTTGTATATTTGTATGTTAGTATGAAACTGATTTACACTGTTAGTTTACGAACATTATTTTAAATTTACAATGACATTCAAATGAGCGATTCGTTGGAATTGTTTATACTGAATATAGTTTTGTTTCTTACTGAGGTTAATTTAGCTTCTTATGTATATGGTTGGCTTATTTGTTACAGATTGATTATATGACTTGAACCTGTTAAGTCATAGTCGCTTGACAACAACTACAATTGTTTTGGGCAAACTCCTCTTTCAACAACAACTACAATTGTTTTGGGCAAACTCCTTTCAAAAGTTTGTTTAGTAAAGCCCATCTACGCATGATTTTTATCTAGTTGGTTGGTATGGTTTTTTATAGGGTTATGATCGGATGACTTATTGTTTTGTGATAAACTCCTCCTCCCTCCCCCTTGTTTATGCTATTTTTAGTCATTTAAGTTTTATCTTTCCATATGTGGGAGTTATAAGGGTTTTGTTTGGGAGTTGGTGGGTAAAGGTAGGGGCTCAAGTGGAAACAGAGGAGGAAGGAGAAGGATGGGTAGTCTCTCCCAAACAAGAGAAAACCTTAAAAAAGGGCAACCCAGTGCACTAGAGCTCCCGCATATGCAGGTCCGGGAAGGGGTCCCACCAGTTGGTGCGTTGTATGCAACCTTACTCTGTTTTACAGAAGAGGTTGTTTCCAGGACTTGAACCCGTAAACTTTCAGTCACATGACAACAACTTTACCAGTTGCGCCAAGGTTACCCTTCAAACAAGAGAAAACCTTATGCCTAATATTTTCTTTGTTTGAGATTATTATAAAAAAGAGAGAATTGAGTTCCCCCAAATCGAGTGGTTTTAGCCCAATAGGAAAAAATAAACCTTTATGCAAGGTGGAGGACTATCCTTTTTAATCCTTTCCTTTTTCCCCTCCCTTCCCCTTTCCACTCCCAAACAAGCTGTAAGAAGAGTAATTGGTGAATGATTGAATCTAGGCTGTCACCACAGGGTTTCTTTGTATAGGTTTGTGGGGTAGTTTTCCGAAGGTCTATTTATCTGTTTGTGTTTTATTGTCGGGGATCTCTTTCAAGTTTTATCATGTAATTATAAAAATTCCTTTCTTTTTTACATAGACCAGCGAAATTCTACCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTCTATGCTAAGGGGCCGAATGTTGGTACGCTATCTTTAGCTGCATTAAACTATTAACTGCTCAATTTGAATTTGGATTGATAGTTATGAAGCGACCATGTGAGTCGTTAAATTTTTTTTTTTTTTTGAAAACTCGGTATCCGGTCTAAGGATCGACTAATCCAAGGGGTCCAAACTTACCGTCCACATGCGGTAGCCTCATTTAAAGCCATAGCAAAGCTTTGTATGGATAATTTTCGCTTTCTATTATGTATTTCAATGTTTTTCTTACTTTACTGGTATGTTGTCTCGCGGTGGCCTTTTGGATGGTTCTGGAACAGTTTTTTTACTTTCTGTCCACATGAATGCTTTGTCTAGGGAACCTCCATCCATAGGTTTATCTTTCACATTTTCAGTTTTGGTGATCTTGATAAAATAAATGCAGTAACCTTGGAGGTGATTGTATAATCTAGACTTACTTCTGTGCTCAATCTTTTAGGTATTAATTTGATAGTTATGTGTTGAGGAAGTACTGCGTCGGTCACAAAAGTCACTACATGATGTTACGTCGCCTCGGCTCTTTCTTTTGCCACATGTTATGTCACTAAATACCAAATCACATTTACATCAGTTATTAGAGATTTCACTGTAGGAAAGAGAAAGATCACTATTTCACTAACATAGAATAGATGCAAATTACAATTTTCAACACACTAGGTTCTCTCAATTTTGGTAACAAGCACTTTATATGATCAGTTGAGCTACTGCTAGTGATGTTTATTATTTGAATTTAATAACTTAATTTGATTGAATCGTCTTCCTAAATAATCATTGCTTCATAAATATACATAGAACTTACACCCATGTCATAATGTGAGTGATTGTAAAGAGATAGTGTTCATACTGTATTTTCTCTATCATTAGAAGTTCCCCCTTGTTATTTGATTTTATATAGATTTCAAGAAGGAACTGAGGTCACTTAATCGAGAACTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCAAGAAGAGTCGAAGAAGTTTCAACTTTATTCAAAAACTTGCATCATCTTTTAAATTCATTGCATCCTCATCAGGTATTAAATCTTCTATACAAATAATACAATTATATATACTTGCCTTTCATTTTCATGCTTCTTTCTTTTTTTCGTTTTCTGGGAATTTTCATTATTACATGATTGTATTTACTCTGTAGGCAAGATCAACATTGATTCATATCATGGAACTTCAGATAGAGCGCCGCAAACAAGCCGTAGAAGACATAAAGAGGTATGTAATACATTTCCTAATATTTTCCTTAATGGTACAGAAACCCTAGGTAATCTTTTGTTCTTGTGCAAGCATAGTAAAATGTGCTTGCTGAATTATTTGAGAGCTTTTAACAATTTTGTTGGTCTCACATTTTTATCATACATACCATCATTTAAGTGTAACGAGACTAGTGCTGTAATTGTCTTTTAAGTCTGAACCCTGGATTTAACTCATTTTGTACTTTTTGAGCCAGGTTTAGATAGAGTTCTCATGAAGCTCTTATGGGAAAAGAGCTGTGAAAATAATCTTATGATGCCTGAGTTTTTTTAACCACAACATTCCGTATAATTCGAAATTAGCTTCTGCATCTAACTGTTTTTGTAGAAGCTCTCTAGTTTTACTTTATAAGCACTTTTTTGTAAGTGAAGAACCGCAGACTTATTTTAATTGAGAAAATTCTATAAAATGGAAGCTAATCCAAACGAGGCATTTGTGGATTACTGAATCCTTAAACTAGTTCATTCTTTCTGGTTGTATCCACTGCCCTACAGAACAACAAAGGCATGTCTTAACATTTATAATTTGCTGCTTTATTTTTTAAATATTGCGTCTTTTATATAATGCTTGTACATAAACGACACGAAGTTTTATTACATTCTTGTCATTAGTCTTTCCTGACCTACCTTTACATTTCAGGAGGAGAGAAGTAACTCGAAGACTTCTTAGCGAGTCTTTAGCAACACTCGATGGCCATTAA

Protein sequence

>MS.gene65156.t1

MEAAHDDAAVVADSDIESNDDQATPPVLRPQRNRNIPSRLEDCEILPDSAVNNEVTRNNQSEIDKFKHTMKSEFEMTDLGKLSYFLGFEFTTSKAVIVMHQQMYIGELLERFQMTDCNIATNPSETNAKLDECKTEEKVEPTEFKQITSEILPSLEEQGVRQLYAKGPNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEEVSTLFKNLHHLLNSLHPHQARSTLIHIMELQIERRKQAVEDIKRRREVTRRLLSESLATLDGH