AlfalfaGEDB | MS.gene65307

M. sativa cultivar XinJiangDaYe / MS.gene65307

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65307.t1	AES95288.1	51.6	184	46	5	1	158	1	167	1.50E-32	149.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65307.t1	G7K021	51.6	184	46	5	1	158	1	167	1.1e-32	149.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65307.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65307.t1	MTR_5g023880	57.609	184	35	5	1	158	1	167	4.89e-58	179
MS.gene65307.t1	MTR_5g023900	54.237	177	59	3	1	157	1	175	1.47e-56	176
MS.gene65307.t1	MTR_5g023870	67.910	134	24	4	1	130	1	119	3.62e-54	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 69 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAACACTGGACCAG+AGG	0.583233	5.2:+14770629	MS.gene65307:CDS
AAAGAACTCTGAAGGGTAGT+TGG	0.402173	5.2:-14769822	None:intergenic
AACAACACTGGACCAGAGGA+AGG	0.595528	5.2:+14770633	MS.gene65307:CDS
AAGAACTCTGAAGGGTAGTT+GGG	0.428150	5.2:-14769821	None:intergenic
AAGCCAGCCAATAGAGATAG+AGG	0.474391	5.2:+14770560	MS.gene65307:CDS
AAGCTGGCAGCTGATGGCGA+AGG	0.613924	5.2:+14769864	MS.gene65307:CDS
AAGTGATGGTCAAGCTATGA+AGG	0.473835	5.2:+14769890	MS.gene65307:CDS
AATGGGAAGCTGGCAGCTGA+TGG	0.610197	5.2:+14769858	MS.gene65307:CDS
ACAATGTCAAGTCAGGAAGA+GGG	0.642713	5.2:+14770591	MS.gene65307:CDS
ACACTGGACCAGAGGAAGGA+AGG	0.561168	5.2:+14770637	MS.gene65307:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATCTTGGACATGATATAT+AGG	-	chr5.2:14770206-14770225	None:intergenic	30.0%
TATATAGGCAATAAAACCCT+AGG	-	chr5.2:14770191-14770210	None:intergenic	30.0%
AGCTCTTAAAGAACTCTGAA+GGG	-	chr5.2:14769832-14769851	None:intergenic	35.0%
AAGTGATGGTCAAGCTATGA+AGG	+	chr5.2:14769890-14769909	MS.gene65307:CDS	40.0%
ACAATGTCAAGTCAGGAAGA+GGG	+	chr5.2:14770591-14770610	MS.gene65307:CDS	40.0%
ACCTCAACCTGATCAATATG+AGG	+	chr5.2:14770073-14770092	MS.gene65307:CDS	40.0%
AGTGATGGTCAAGCTATGAA+GGG	+	chr5.2:14769891-14769910	MS.gene65307:CDS	40.0%
CAAACATGTGTTTCCCACTT+GGG	+	chr5.2:14769944-14769963	MS.gene65307:CDS	40.0%
CCTCAACCTGATCAATATGA+GGG	+	chr5.2:14770074-14770093	MS.gene65307:CDS	40.0%
CTCTGATACAATGTCAAGTC+AGG	+	chr5.2:14770584-14770603	MS.gene65307:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	14769720	14770698	14769720	ID=MS.gene65307
chr5.2	mRNA	14769720	14770698	14769720	ID=MS.gene65307.t1;Parent=MS.gene65307
chr5.2	exon	14769720	14770095	14769720	ID=MS.gene65307.t1.exon1;Parent=MS.gene65307.t1
chr5.2	CDS	14769720	14770095	14769720	ID=cds.MS.gene65307.t1;Parent=MS.gene65307.t1
chr5.2	exon	14770550	14770698	14770550	ID=MS.gene65307.t1.exon2;Parent=MS.gene65307.t1
chr5.2	CDS	14770550	14770698	14770550	ID=cds.MS.gene65307.t1;Parent=MS.gene65307.t1

Gene Sequence

>MS.gene65307

ATGCAGAACCCTAAACCTAACCCTTCCGAGAATTCAACCCCCACCAACAACAAGTCCCCTCAAGACCCTCCCTCTGATGATGAATCCCTCAAAGAAACCAACCCAACTACCCTTCAGAGTTCTTTAAGAGCTCGTGAGAATGGGAAGCTGGCAGCTGATGGCGAAGGAGTAAGTGATGGTCAAGCTATGAAGGGGAGGAAGAGTAATATTTGTTGTCATAGATGCAAACATGTGTTTCCCACTTGGGCTACTTTGATGAAGCATTATCAAGAACACTATATTTGTTGTCATCCTCATGGTTATTCAGCACCTCCTGGTTTTTCTCCACTTCCTTCCACATCAACAGCCACCCCACCTCAACCTGATCAATATGAGGGTAAAACTAAAACCTAATTTCCTATCTCAAAACTATTTATTGTCATGTCTTTTTTTTTTCACACTATAATTTTTAGGTCAACACTCCAGTGACCTAGGGTTTTATTGCCTATATATCATGTCCAAGATTCAATTATTTAATGTTATATAATTATTATTTTTTTCATTTAATTATTTTGATTTCAAAGTACTTGTGTATAGATCATTCATAAAATACTTGTGTATAGATCATTCATAAAAGATTGCACCATAGACACAAACATATATATGTTCACTTTGAGTGTTGCTTAATTTTATGAGATCTAATTCATGTAGGCATCTATATATATATCTTTAATTTTTTTTATAACTTATTGGTTTTTAATTTAACAATTTGTTTTTTTTTCTTTCAAACTAATGATTTTACAATGAAGCAATTATAATTATAATTTTGAATGTTTTTCTTTTGTTACTAGGTGATGATCAAAGCCAGCCAATAGAGATAGAGGACTCTGATACAATGTCAAGTCAGGAAGAGGGAAGGAACCAAGGCGCAAACAACAACACTGGACCAGAGGAAGGAAGGCCCAAGAGGACGATCAAGAAGCCCAGCCGATACAACTGA

Protein sequence

>MS.gene65307.t1

MQNPKPNPSENSTPTNNKSPQDPPSDDESLKETNPTTLQSSLRARENGKLAADGEGVSDGQAMKGRKSNICCHRCKHVFPTWATLMKHYQEHYICCHPHGYSAPPGFSPLPSTSTATPPQPDQYEGDDQSQPIEIEDSDTMSSQEEGRNQGANNNTGPEEGRPKRTIKKPSRYN