AlfalfaGEDB | MS.gene65320

M. sativa cultivar XinJiangDaYe / MS.gene65320

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65320.t1	XP_003612350.1	94.6	312	16	1	1	312	20	330	2.30E-161	578.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65320.t1	O81791	49.0	314	132	7	1	299	59	359	3.2e-66	253.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65320.t1	G7K041	94.6	312	16	1	1	312	20	330	1.7e-161	578.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65320.t1	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65320.t1	MTR_5g024070	94.551	312	16	1	1	312	20	330	0.0	600
MS.gene65320.t1	MTR_3g435550	37.037	135	77	2	162	295	38	165	1.91e-23	95.5
MS.gene65320.t1	MTR_3g091700	38.400	125	59	2	171	295	148	254	1.00e-20	89.7
MS.gene65320.t1	MTR_3g104830	48.276	87	40	2	180	264	393	476	1.85e-13	70.9
MS.gene65320.t1	MTR_3g115400	45.783	83	41	2	157	237	569	649	3.91e-12	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65320.t1	AT4G35590	50.809	309	124	8	1	294	9	304	4.67e-87	264
MS.gene65320.t1	AT4G35590	50.809	309	124	8	1	294	59	354	2.43e-86	264
MS.gene65320.t1	AT1G74480	46.087	115	57	2	180	292	131	242	7.74e-24	99.4
MS.gene65320.t1	AT1G18790	44.628	121	61	3	175	293	120	236	8.37e-24	98.6
MS.gene65320.t1	AT5G66990	42.727	110	59	2	187	295	164	270	2.09e-21	92.0
MS.gene65320.t1	AT5G53040	42.609	115	53	1	181	295	147	248	3.64e-21	90.9
MS.gene65320.t1	AT5G16100	50.000	64	32	0	174	237	346	409	1.57e-13	71.2

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Find 59 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAACATAGAGAAG+AGG	0.595516	5.2:-14940927	MS.gene65320:CDS
AAAAGGAAGTGCAGAGAATT+TGG	0.277802	5.2:-14941631	MS.gene65320:CDS
AAAGATGTTGGAAAGTGAAA+AGG	0.459498	5.2:-14940944	MS.gene65320:CDS
AAAGATTACTTTATCAGATT+TGG	0.267461	5.2:-14941719	MS.gene65320:CDS
AAATTGAGACCAAGAGATTC+AGG	0.445679	5.2:-14940888	MS.gene65320:CDS
AACATCTTGCCTGAATCTCT+TGG	0.476779	5.2:+14940879	None:intergenic
AAGAGGCAAAACATCAGGAA+AGG	0.561722	5.2:-14941005	MS.gene65320:CDS
AAGGGTATAAGAATGGAGTT+TGG	0.381031	5.2:-14943590	MS.gene65320:CDS
AATCTTTGCAACATGGTCAC+TGG	0.527182	5.2:+14941735	None:intergenic
AATTGGCATATCAAAGTACT+TGG	0.507062	5.2:+14941696	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAAAACATAGAGAAG+AGG	-	chr5.2:14943615-14943634	MS.gene65320:CDS	30.0%
AAAGATGTTGGAAAGTGAAA+AGG	-	chr5.2:14943598-14943617	MS.gene65320:CDS	30.0%
ATACCTTGTAACCAACAAAA+AGG	+	chr5.2:14941033-14941052	None:intergenic	30.0%
ATTAAAGAAGAACATGACAG+AGG	+	chr5.2:14942258-14942277	None:intergenic	30.0%
ATTAGGAAGAAGTTATGCAT+TGG	+	chr5.2:14942697-14942716	None:intergenic	30.0%
CGTCAAAGAATCTAAATGTT+GGG	-	chr5.2:14942876-14942895	MS.gene65320:intron	30.0%
GATTTCAACAACCTAAGAAT+TGG	+	chr5.2:14940909-14940928	None:intergenic	30.0%
GGAATAAAATGTTCAAAAGC+AGG	+	chr5.2:14942591-14942610	None:intergenic	30.0%
GTTCAAAAATCAGTTACCAA+TGG	+	chr5.2:14941863-14941882	None:intergenic	30.0%
GTTGTCAATTAGCATATGTT+TGG	-	chr5.2:14943266-14943285	MS.gene65320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	14940801	14943763	14940801	ID=MS.gene65320
chr5.2	mRNA	14940801	14943763	14940801	ID=MS.gene65320.t1;Parent=MS.gene65320
chr5.2	exon	14943516	14943763	14943516	ID=MS.gene65320.t1.exon1;Parent=MS.gene65320.t1
chr5.2	CDS	14943516	14943763	14943516	ID=cds.MS.gene65320.t1;Parent=MS.gene65320.t1
chr5.2	exon	14942033	14942280	14942033	ID=MS.gene65320.t1.exon2;Parent=MS.gene65320.t1
chr5.2	CDS	14942033	14942280	14942033	ID=cds.MS.gene65320.t1;Parent=MS.gene65320.t1
chr5.2	exon	14941570	14941784	14941570	ID=MS.gene65320.t1.exon3;Parent=MS.gene65320.t1
chr5.2	CDS	14941570	14941784	14941570	ID=cds.MS.gene65320.t1;Parent=MS.gene65320.t1
chr5.2	exon	14940801	14941028	14940801	ID=MS.gene65320.t1.exon4;Parent=MS.gene65320.t1
chr5.2	CDS	14940801	14941028	14940801	ID=cds.MS.gene65320.t1;Parent=MS.gene65320.t1

Gene Sequence

>MS.gene65320

ATGAGAAGCGTGCATGTGTACCGTGAATGTGATGGAGGAGAAAAGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAGAATGGTTCTTATGTTGAAATGAAAGCTACTCCAATTCTTAGGTTGTTGAAATCTTTTGTTTCTGAAGAGATTTTTGAAGGGTATAAGAATGGAGTTTGGCTTTGTGTTTTTGCTTTTCATGCTTGTAATGTCCCTCAATTTTCTCACATTCCAACCTTTTTGTTGGTTACAAGGTATGTATATCTACTTACCCTTTTATTGAATTTGAATTGTTTCATTTGATTATATGATTATGTATTCTGGGTTTGTTTGGATTCACTTATTTGAACTTATAACTTATGACATGTACCAATGTTTTTAAATAGCGGCTATAGCGGTGTTATAGTGCTATTGCATAGCGGAATTTGAACAAACGGCTATTGTTCCACGATACACTGTTTTGTATAAAATGTTGTGAAATAGCAACTATAGCGGCGCTATGGCAGTGTTGCATGGCGGAATTTGAACAAAACGCTATTTTCTGTAATCTGCAATTGACAACATTGACATGTACATAATTTGTTAACATTGAAATGTACATAATCTGTTTTCAGTTTATTGAAATAAGCTCGCCAAGATAGCTTATGAAAACAACTTATAACATATATGAAAATAATTCGACTTTAGTTCATCTTTTGTTATAAATATAGTTTTTACATAAGTGCTTAACTAAGTTGTTTATCCTGACAGGGCCTTGGCTTTTAGGCCTGACCAAGGTTTCCCTGCTTTAATCAATTTGTATTGTAAAACAGCACACAGAGCAGCAAAATGGTGTGTACTGTGTACAAATTGGACCCTGTGAATGATATATAAATGTATTTCAGTTCTCTTATGAGAATGAAAAATAAAGTCCCTACACAAGTAACGGCGAATCACTCTATAATAAACAGTTTCTTTTCATAAACATAAAGATTCAAATTCAGTTATAAGTAACAGTCCTGTTTGTTAGATTAGATAACTGTAGTCTGTACATGTGTTCAAGTATTGATTTCTTTATGTATGTGGCCATTGGTAACTGATTTTTGAACCCGGATTCCTTACAGTTACGAAATGGTGCAGTAAATGTTTGGCATTGGATGAAGATCAGATGACTTGTATTTTAACTTTATTGAATCAAATTCCAAATACGATTTGAAATCCGAGTTGTCTGATTTTCATCCTACAGTTGCAATTGCGGCTGCTGCAAATGTTGACTGCAGGGTATCCATTTCCCTAACTGTTCCACAACATACTTTTGGTGAAGTTAGAATTTGAGGGCATGGTTCAGCAATGGATGGCATAAAATTTAGAAAATATATCTCTCTGTAACTATTTTTAGTGCATATTTTAATCATAACAAACGTAACAAAATTAATGCTTTGACTTGAATATGTTTTTTGATTTCTTGGTTGTCCTAACTTCCTCTGTCATGTTCTTCTTTAATTTTCAGGAATCCAAAGCTTCAGGCCATTCCAAACCTGCTTAATGATCTCCACATGATATACAAGTTGGAACCGAAGAAGGAACGAAAAGATACACCAGAGAGCTCTGCAAGGGAAGAATTGGAAGGAAACAACAATGATTTCCAACCACTAAAAAAAGTCTTGCCTGTGCTTAATCAGGATCTCAATTTTCTTCCTTATGAAGAAGACGAGGCTGAGTTACTGGATGTTGAGACAAATTTTGAAAGTTCAGCAGGTTTGAAAGTTCACCGGGTTTAGATTCAAATGCTCCCAGTCAATTATCACGTTGTTCCTGCTTTTGAACATTTTATTCCAACAACTCAGTCCTAGCTTTATACACTTATTTTATTAATAGGAATCATGGAGATAAAAAAGTTGTAGTGCAATAAATATGTTGCCAATGCATAACTTCTTCCTAATGTTGAGTTAATTATGTCATGTTTTAACATTTTATATCTAAATTGATAAAGTGAGTGTTTGCAGGTTTTTTAGGAAAGAAAAAGAGGGCAGCCAGTGACCATGTTGCAAAGATTACTTTATCAGATTTGGCCAAGTACTTTGATATGCCAATTGCAGAAGCGTCAAAGAATCTAAATGTTGGGCTTACTGTTCTCAAAAGGAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTCGACAGTCTCATTCATGATCTTCAGGTTCTACTCCACTTTTTTATTTATTATTATGACTTTAAGAATCTCTGTTGAGCTATATACATACATACATACATACATACATATCAATTTCCAAGAAAACTTCTATGATTTACAGCCAACTCTTGAACTAATATTTAGATATTCGAACATGACTGTCATTTTAATGTGATTGCAAACCTTATAGTATTTGGTTGAAATACAAACATGAAAATTTATAGTATCTGAGGCTTCTTTAGATAGGTAACCTTATACAAATCTTTTCTGTATTTTTGTTGTCAATTAGCATATGTTTGGATGAGCGAAGAGTTTGATAAAATCACAATGTCACCGTGATTTTGTTTAAGTTACAAAGAGTAGCTTTTGTGCCAAAATCACGGTGGCTCACCGTGATTCGGGTCTCAATGCCAATCCAAACATGCACTGAAGCCTATAAAGTATTTGGTCTATAAAATCTTCGTCTTTCGCTTTATTTTCGTTTATGCTTCACTTTTCCTAACAATCTTCAAGTGAACTCCTTATACACATTGCAACATCTCTGCAGGAAGAGGCAAAACATCAGGAAAGGGAGGATAAAGATGCAGCCATGGCAGTTATAAGAAGGCAAAAGATGTTGGAAAGTGAAAAGGAAAACATAGAGAAGAGGCCCTTCATGGACATACAAATTGAGACCAAGAGATTCAGGCAAGATGTTTTCAAGAGAAGGCACAGAGCCAGAGTTATTGAAAAACAGAATTTTCTACGGTTGGAAGCACCTAAACCTAGCAATTAG

Protein sequence

>MS.gene65320.t1

MRSVHVYRECDGGEKEVEREFVFSENGSYVEMKATPILRLLKSFVSEEIFEGYKNGVWLCVFAFHACNVPQFSHIPTFLLVTRNPKLQAIPNLLNDLHMIYKLEPKKERKDTPESSAREELEGNNNDFQPLKKVLPVLNQDLNFLPYEEDEAELLDVETNFESSAGFLGKKKRAASDHVAKITLSDLAKYFDMPIAEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEREDKDAAMAVIRRQKMLESEKENIEKRPFMDIQIETKRFRQDVFKRRHRARVIEKQNFLRLEAPKPSN