AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65339

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65339.t1 MTR_5g024390 93.488 430 26 1 1 430 1 428 0.0 828
MS.gene65339.t1 MTR_5g024500 92.326 430 31 1 1 430 1 428 0.0 819
MS.gene65339.t1 MTR_3g103110 68.103 464 110 5 3 430 339 800 0.0 651
MS.gene65339.t1 MTR_7g109640 70.909 440 89 5 3 430 384 796 0.0 641
MS.gene65339.t1 MTR_3g103120 66.667 441 111 4 2 430 425 841 0.0 583
MS.gene65339.t1 MTR_5g071340 43.187 433 209 8 3 423 679 1086 2.74e-113 358
MS.gene65339.t1 MTR_3g464550 43.056 432 211 8 1 421 601 1008 1.31e-110 351
MS.gene65339.t1 MTR_3g103160 39.059 425 163 12 2 423 107 438 7.89e-72 233
MS.gene65339.t1 MTR_2g078040 34.186 430 247 8 3 421 762 1166 1.66e-71 245
MS.gene65339.t1 MTR_1g103830 35.198 429 246 5 3 421 606 1012 1.39e-69 239
MS.gene65339.t1 MTR_1g072130 32.274 409 245 6 3 400 812 1199 4.09e-60 212
MS.gene65339.t1 MTR_7g095140 31.046 306 197 5 125 427 13 307 2.35e-48 169
MS.gene65339.t1 MTR_1g068930 24.946 465 252 13 4 421 478 892 7.64e-41 155
MS.gene65339.t1 MTR_1g068930 24.946 465 252 13 4 421 441 855 1.06e-40 155
MS.gene65339.t1 MTR_4g099530 27.778 432 255 14 3 421 111 498 2.21e-40 151
MS.gene65339.t1 MTR_4g056990 24.380 484 267 15 2 430 189 628 1.01e-31 127
MS.gene65339.t1 MTR_4g057290 25.587 426 214 10 37 396 126 514 1.53e-29 121
MS.gene65339.t1 MTR_4g050090 23.469 490 254 13 12 424 199 644 8.77e-28 116
MS.gene65339.t1 MTR_7g102610 23.729 472 240 17 29 428 527 950 1.09e-22 101
MS.gene65339.t1 MTR_1g062330 23.583 441 261 15 37 423 386 804 1.62e-22 100
MS.gene65339.t1 MTR_6g061000 50.000 90 34 2 88 177 23 101 2.57e-19 83.2
MS.gene65339.t1 MTR_2g084425 31.111 180 115 4 247 425 847 1018 6.88e-18 87.0
MS.gene65339.t1 MTR_2g084425 22.867 293 148 5 7 253 465 725 1.95e-14 76.3
MS.gene65339.t1 MTR_2g084425 22.867 293 148 5 7 253 465 725 2.61e-14 75.9
MS.gene65339.t1 MTR_3g109988 29.891 184 100 6 219 392 191 355 5.05e-13 70.5
MS.gene65339.t1 MTR_3g110005 29.891 184 100 6 219 392 191 355 5.05e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65339.t1 AT5G58610 41.014 434 217 7 3 421 368 777 3.07e-99 315
MS.gene65339.t1 AT5G58610 41.014 434 217 7 3 421 599 1008 1.32e-97 314
MS.gene65339.t1 AT5G58610 41.014 434 217 7 3 421 599 1008 1.32e-97 314
MS.gene65339.t1 AT5G58610 40.848 448 220 9 3 430 590 1012 1.86e-97 315
MS.gene65339.t1 AT5G58610 40.848 448 220 9 3 430 599 1021 2.19e-97 315
MS.gene65339.t1 AT5G58610 40.848 448 220 9 3 430 590 1012 2.86e-97 314
MS.gene65339.t1 AT5G58610 39.130 437 217 8 3 430 590 986 1.49e-87 288
MS.gene65339.t1 AT5G58610 39.130 437 217 8 3 430 590 986 1.81e-87 288
MS.gene65339.t1 AT5G58610 40.576 382 188 7 3 369 599 956 4.53e-82 271
MS.gene65339.t1 AT5G58610 40.576 382 188 7 3 369 590 947 5.37e-82 271
MS.gene65339.t1 AT5G58610 39.826 344 168 7 3 331 590 909 4.93e-68 233
MS.gene65339.t1 AT5G36740 32.093 430 256 6 3 421 545 949 5.74e-66 229
MS.gene65339.t1 AT5G36740 32.093 430 256 6 3 421 545 949 5.74e-66 229
MS.gene65339.t1 AT1G05380 33.021 427 257 5 3 421 520 925 2.29e-65 227
MS.gene65339.t1 AT1G05380 33.021 427 257 5 3 421 520 925 2.29e-65 227
MS.gene65339.t1 AT1G05380 33.021 427 257 5 3 421 520 925 2.29e-65 227
MS.gene65339.t1 AT3G14980 31.797 434 262 7 3 427 621 1029 1.26e-64 224
MS.gene65339.t1 AT3G14980 31.797 434 262 7 3 427 576 984 2.03e-64 224
MS.gene65339.t1 AT3G14980 31.797 434 262 7 3 427 621 1029 2.25e-64 224
MS.gene65339.t1 AT3G14980 31.797 434 262 7 3 427 621 1029 2.25e-64 224
MS.gene65339.t1 AT3G14980 31.797 434 262 7 3 427 621 1029 2.25e-64 224
MS.gene65339.t1 AT5G36740 31.136 440 257 7 3 421 392 806 1.83e-62 218
MS.gene65339.t1 AT5G63900 36.637 333 190 8 94 423 228 542 5.26e-62 210
MS.gene65339.t1 AT4G14920 31.250 432 262 6 3 424 580 986 6.82e-60 211
MS.gene65339.t1 AT4G14920 31.250 432 262 6 3 424 580 986 6.82e-60 211
MS.gene65339.t1 AT4G14920 31.250 432 262 6 3 424 580 986 6.90e-60 211
MS.gene65339.t1 AT5G36670 30.045 446 258 8 3 421 545 963 1.31e-57 204
MS.gene65339.t1 AT5G36670 30.045 446 258 8 3 421 545 963 1.31e-57 204
MS.gene65339.t1 AT5G36740 32.258 372 216 6 3 363 545 891 1.61e-56 200
MS.gene65339.t1 AT5G36740 32.258 372 216 6 3 363 545 891 1.61e-56 200
MS.gene65339.t1 AT5G36670 32.258 372 216 6 3 363 545 891 1.61e-56 200
MS.gene65339.t1 AT5G36670 29.167 456 259 9 3 421 392 820 6.82e-54 194
MS.gene65339.t1 AT5G36670 29.167 456 259 9 3 421 545 973 1.47e-53 193
MS.gene65339.t1 AT3G14980 30.678 339 201 7 3 332 621 934 3.97e-43 162
MS.gene65339.t1 AT3G53680 28.571 469 233 17 4 419 409 828 2.13e-41 157
MS.gene65339.t1 AT3G53680 28.571 469 233 17 4 419 411 830 2.16e-41 157
MS.gene65339.t1 AT2G37520 26.261 476 236 14 4 419 392 812 2.55e-41 156
MS.gene65339.t1 AT2G36720 25.470 479 253 13 13 425 533 973 7.24e-39 150
MS.gene65339.t1 AT2G36720 25.470 479 253 13 13 425 533 973 7.24e-39 150
MS.gene65339.t1 AT2G27980 24.194 496 258 15 6 424 606 1060 2.08e-32 130

Find 68 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACATTCTTGTTTGCATT+TGG 0.183779 5.2:+15229716 None:intergenic
TGGTTTCTATAATGTAATTT+TGG 0.224054 5.2:-15229310 MS.gene65339:CDS
GTTTGTTCAGTTTGTGGTTT+TGG 0.236361 5.2:-15229861 MS.gene65339:CDS
GTGGCAACTATAAGGATTTA+TGG 0.245404 5.2:-15229264 MS.gene65339:CDS
ATCAACTCTCTTCCTGATAA+AGG 0.280267 5.2:+15229384 None:intergenic
TCACATTCTTGTTTGCATTT+GGG 0.312904 5.2:+15229717 None:intergenic
GCATTCCACCTCCGTTGTTT+AGG 0.320877 5.2:-15229804 MS.gene65339:CDS
GTTGATAAAGAATCAAGTTT+TGG 0.324712 5.2:-15230225 MS.gene65339:CDS
TGATTTCAGTGGCAACTATA+AGG 0.339394 5.2:-15229272 MS.gene65339:CDS
TTATGTCTAAAGAAGTTGTT+AGG 0.347395 5.2:-15229552 MS.gene65339:CDS
AGATTATCTGCAACCTTGAT+TGG 0.350292 5.2:+15229525 None:intergenic
AAAGGAGAGTAAGTTGAATA+TGG 0.354999 5.2:-15229448 MS.gene65339:CDS
AATTTAATCACATGGAGAAT+TGG 0.356404 5.2:-15229605 MS.gene65339:CDS
AAACGATGGGTATTGTTTCT+TGG 0.373623 5.2:-15230247 None:intergenic
GATAGTGTTTGTTCAGTTTG+TGG 0.378867 5.2:-15229867 MS.gene65339:CDS
CTGGGTTCGCATGATCATAA+AGG 0.384834 5.2:-15229996 MS.gene65339:CDS
GGATTGTCAAAGGGAAGCTC+TGG 0.400874 5.2:-15230015 MS.gene65339:CDS
AACACTTGGACAAGATCATT+TGG 0.403595 5.2:-15229093 MS.gene65339:CDS
TGAAGAGGAGTTTAATCAAA+AGG 0.404213 5.2:-15229466 MS.gene65339:CDS
AAGCACTGAAAAGACCTATA+TGG 0.410177 5.2:-15228987 MS.gene65339:CDS
GGCTCTTGGTGTATTGTATG+AGG 0.423950 5.2:-15229427 MS.gene65339:CDS
ACCATCCACAAGTATCTTGT+TGG 0.424383 5.2:-15230057 MS.gene65339:CDS
CAAACTCGCTTGAACTTTCG+TGG 0.436470 5.2:-15229330 MS.gene65339:CDS
ATTGAACACAAACAAGAATC+TGG 0.437308 5.2:+15229679 None:intergenic
CAAGCAATGCAAGGCCATAT+AGG 0.465235 5.2:+15228973 None:intergenic
CCTGATAAAGGATCAAAAGT+TGG 0.477884 5.2:+15229396 None:intergenic
ACAAGTATCTTGTTGGAAGA+TGG 0.480189 5.2:-15230050 MS.gene65339:CDS
TTGTCTTCGATACTGTTCCT+TGG 0.482098 5.2:+15229209 None:intergenic
ATCGAGTTCCGATTGGTGAA+TGG 0.484059 5.2:-15229776 MS.gene65339:CDS
GGAAGATGGAAGGTCGTTGT+TGG 0.488980 5.2:-15230036 MS.gene65339:CDS
GCTCTTGGTGTATTGTATGA+GGG 0.493509 5.2:-15229426 MS.gene65339:CDS
TGGGTTCGCATGATCATAAA+GGG 0.494630 5.2:-15229995 MS.gene65339:CDS
GAGAAACAGTTAACTCGCTT+AGG 0.495020 5.2:-15229156 MS.gene65339:CDS
AGGAATGTGTCATTTGTTGA+TGG 0.496868 5.2:-15229187 MS.gene65339:CDS
CAGAGGATGCTATGAACACT+TGG 0.500216 5.2:-15229107 MS.gene65339:CDS
AAATTCAAATTCAATTCCTA+CGG 0.506641 5.2:+15229623 None:intergenic
GTCGTTGTTGGATTGTCAAA+GGG 0.517227 5.2:-15230024 MS.gene65339:CDS
GGACAGAACCATTCACCAAT+CGG 0.518159 5.2:+15229768 None:intergenic
GTTGTTAGGAAAACCAATCA+AGG 0.520069 5.2:-15229538 MS.gene65339:CDS
TCTTCGATACTGTTCCTTGG+TGG 0.524421 5.2:+15229212 None:intergenic
GGTCGTTGTTGGATTGTCAA+AGG 0.528790 5.2:-15230025 MS.gene65339:CDS
AGTAAGTTGAATATGGCTCT+TGG 0.540429 5.2:-15229441 MS.gene65339:CDS
AGCAACAAAGTTGTCAAAAG+AGG 0.543182 5.2:-15230173 MS.gene65339:CDS
ATCTTCCAACAAGATACTTG+TGG 0.550941 5.2:+15230052 None:intergenic
ATATCACTTTGGATGCGTAA+AGG 0.554258 5.2:-15229646 MS.gene65339:CDS
TGAATTTGAATTTAATCACA+TGG 0.555993 5.2:-15229613 MS.gene65339:CDS
TGTGAATAGTGTTGATGAAG+AGG 0.557314 5.2:-15229481 MS.gene65339:CDS
ACCGGCTTCGAGTCTCATGC+AGG 0.558836 5.2:-15230095 MS.gene65339:CDS
TGAGACCTAAACAACGGAGG+TGG 0.586505 5.2:+15229799 None:intergenic
GGTCTCAATCGAGTTCCGAT+TGG 0.586950 5.2:-15229783 MS.gene65339:CDS
GATTGTCAAAGGGAAGCTCT+GGG 0.597706 5.2:-15230014 MS.gene65339:CDS
TTTCAGTGCTTTGAGACACA+TGG 0.604056 5.2:+15228999 None:intergenic
AGATAATCTAACATGGACAT+TGG 0.607457 5.2:-15229511 MS.gene65339:CDS
CTCCAACATCAAGCAATGCA+AGG 0.609626 5.2:+15228964 None:intergenic
TCCAACAAGATACTTGTGGA+TGG 0.616702 5.2:+15230056 None:intergenic
CAACGGAGGTGGAATGCAGA+AGG 0.622944 5.2:+15229810 None:intergenic
GTATCTTGTTGGAAGATGGA+AGG 0.629827 5.2:-15230046 MS.gene65339:CDS
ATTACTTCTGCATTCCTCAG+AGG 0.633654 5.2:-15229124 MS.gene65339:CDS
ACAAGAATGTGAAGATCACA+AGG 0.637763 5.2:-15229706 MS.gene65339:CDS
AATGGGTGAAGTGATTTCAG+TGG 0.642896 5.2:-15229283 MS.gene65339:CDS
TTTGGATGCGTAAAGGCCGT+AGG 0.643030 5.2:-15229639 MS.gene65339:CDS
ACCTGCATGAGACTCGAAGC+CGG 0.643864 5.2:+15230094 None:intergenic
AGGTTGCAGATAATCTAACA+TGG 0.665981 5.2:-15229518 MS.gene65339:CDS
CTCGATTGAGACCTAAACAA+CGG 0.677857 5.2:+15229793 None:intergenic
AAGGAACAGTATCGAAGACA+AGG 0.678537 5.2:-15229207 MS.gene65339:CDS
GCTACCCTGACAGAAAACAT+TGG 0.690433 5.2:+15230193 None:intergenic
AGTGTTCATAGCATCCTCTG+AGG 0.736105 5.2:+15229110 None:intergenic
GATTGAGACCTAAACAACGG+AGG 0.762353 5.2:+15229796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCAAATTCAATTCCTA+CGG + chr5.2:15229594-15229613 None:intergenic 20.0%
!! TGAATTTGAATTTAATCACA+TGG - chr5.2:15229601-15229620 MS.gene65339:CDS 20.0%
!!! AATGTAATTTTGGAGAAAAT+GGG - chr5.2:15229914-15229933 MS.gene65339:CDS 20.0%
!!! ACTTTTTTAGAATTTGAGAA+TGG - chr5.2:15230190-15230209 MS.gene65339:CDS 20.0%
!!! TAATGTAATTTTGGAGAAAA+TGG - chr5.2:15229913-15229932 MS.gene65339:CDS 20.0%
!!! TGGTTTCTATAATGTAATTT+TGG - chr5.2:15229904-15229923 MS.gene65339:CDS 20.0%
! AATTTAATCACATGGAGAAT+TGG - chr5.2:15229609-15229628 MS.gene65339:CDS 25.0%
! TTATGTCTAAAGAAGTTGTT+AGG - chr5.2:15229662-15229681 MS.gene65339:CDS 25.0%
!!! GTTGATAAAGAATCAAGTTT+TGG - chr5.2:15228989-15229008 MS.gene65339:CDS 25.0%
AGATAATCTAACATGGACAT+TGG - chr5.2:15229703-15229722 MS.gene65339:CDS 30.0%
ATTGAACACAAACAAGAATC+TGG + chr5.2:15229538-15229557 None:intergenic 30.0%
TGAAGAGGAGTTTAATCAAA+AGG - chr5.2:15229748-15229767 MS.gene65339:CDS 30.0%
TGTGAGCAAAAATATCACTT+TGG - chr5.2:15229557-15229576 MS.gene65339:CDS 30.0%
! AAAGGAGAGTAAGTTGAATA+TGG - chr5.2:15229766-15229785 MS.gene65339:CDS 30.0%
! CATATTTTGCAACAACAAGT+TGG + chr5.2:15229470-15229489 None:intergenic 30.0%
! TCACATTCTTGTTTGCATTT+GGG + chr5.2:15229500-15229519 None:intergenic 30.0%
! TTCACATTCTTGTTTGCATT+TGG + chr5.2:15229501-15229520 None:intergenic 30.0%
!!! AAGAATCAAGTTTTGGTTTC+AGG - chr5.2:15228996-15229015 MS.gene65339:CDS 30.0%
!!! AGAATCAAGTTTTGGTTTCA+GGG - chr5.2:15228997-15229016 MS.gene65339:CDS 30.0%
!!! CAAGATCATTTGGTTTTACT+AGG - chr5.2:15230131-15230150 MS.gene65339:CDS 30.0%
AACACTTGGACAAGATCATT+TGG - chr5.2:15230121-15230140 MS.gene65339:CDS 35.0%
ACAAGAATGTGAAGATCACA+AGG - chr5.2:15229508-15229527 MS.gene65339:CDS 35.0%
ACAAGTATCTTGTTGGAAGA+TGG - chr5.2:15229164-15229183 MS.gene65339:CDS 35.0%
AGATTATCTGCAACCTTGAT+TGG + chr5.2:15229692-15229711 None:intergenic 35.0%
AGCAACAAAGTTGTCAAAAG+AGG - chr5.2:15229041-15229060 MS.gene65339:CDS 35.0%
AGGTTGCAGATAATCTAACA+TGG - chr5.2:15229696-15229715 MS.gene65339:CDS 35.0%
ATATCACTTTGGATGCGTAA+AGG - chr5.2:15229568-15229587 MS.gene65339:CDS 35.0%
ATCAACTCTCTTCCTGATAA+AGG + chr5.2:15229833-15229852 None:intergenic 35.0%
ATCTTCCAACAAGATACTTG+TGG + chr5.2:15229165-15229184 None:intergenic 35.0%
CCTGATAAAGGATCAAAAGT+TGG + chr5.2:15229821-15229840 None:intergenic 35.0%
GATAGTGTTTGTTCAGTTTG+TGG - chr5.2:15229347-15229366 MS.gene65339:CDS 35.0%
GTGGCAACTATAAGGATTTA+TGG - chr5.2:15229950-15229969 MS.gene65339:CDS 35.0%
GTTGTTAGGAAAACCAATCA+AGG - chr5.2:15229676-15229695 MS.gene65339:CDS 35.0%
TGATTTCAGTGGCAACTATA+AGG - chr5.2:15229942-15229961 MS.gene65339:CDS 35.0%
! AGTAAGTTGAATATGGCTCT+TGG - chr5.2:15229773-15229792 MS.gene65339:CDS 35.0%
! CCAACTTTTGATCCTTTATC+AGG - chr5.2:15229818-15229837 MS.gene65339:CDS 35.0%
! GTTTGTTCAGTTTGTGGTTT+TGG - chr5.2:15229353-15229372 MS.gene65339:CDS 35.0%
!! AAGCACTGAAAAGACCTATA+TGG - chr5.2:15230227-15230246 MS.gene65339:CDS 35.0%
!! AGGAATGTGTCATTTGTTGA+TGG - chr5.2:15230027-15230046 MS.gene65339:CDS 35.0%
!! TGTGAATAGTGTTGATGAAG+AGG - chr5.2:15229733-15229752 MS.gene65339:CDS 35.0%
!!! CGTGTTACTTTTACTATCAC+CGG - chr5.2:15229101-15229120 MS.gene65339:CDS 35.0%
AATGGGTGAAGTGATTTCAG+TGG - chr5.2:15229931-15229950 MS.gene65339:CDS 40.0%
ACCATCCACAAGTATCTTGT+TGG - chr5.2:15229157-15229176 MS.gene65339:CDS 40.0%
ATTACTTCTGCATTCCTCAG+AGG - chr5.2:15230090-15230109 MS.gene65339:CDS 40.0%
CTCGATTGAGACCTAAACAA+CGG + chr5.2:15229424-15229443 None:intergenic 40.0%
GAGAAACAGTTAACTCGCTT+AGG - chr5.2:15230058-15230077 MS.gene65339:CDS 40.0%
GTATCTTGTTGGAAGATGGA+AGG - chr5.2:15229168-15229187 MS.gene65339:CDS 40.0%
GTCGTTGTTGGATTGTCAAA+GGG - chr5.2:15229190-15229209 MS.gene65339:CDS 40.0%
TCCAACAAGATACTTGTGGA+TGG + chr5.2:15229161-15229180 None:intergenic 40.0%
TGGGTTCGCATGATCATAAA+GGG - chr5.2:15229219-15229238 MS.gene65339:CDS 40.0%
TTGTCTTCGATACTGTTCCT+TGG + chr5.2:15230008-15230027 None:intergenic 40.0%
! AAGGAACAGTATCGAAGACA+AGG - chr5.2:15230007-15230026 MS.gene65339:CDS 40.0%
! AGTTGCAGAGATAGTTTTCG+TGG - chr5.2:15229979-15229998 MS.gene65339:CDS 40.0%
! GCTCTTGGTGTATTGTATGA+GGG - chr5.2:15229788-15229807 MS.gene65339:CDS 40.0%
!! GGTTTTGCAGTGTAGTTTGT+GGG - chr5.2:15229630-15229649 MS.gene65339:CDS 40.0%
!! TGGTTTTGCAGTGTAGTTTG+TGG - chr5.2:15229629-15229648 MS.gene65339:CDS 40.0%
!! TTTCAGTGCTTTGAGACACA+TGG + chr5.2:15230218-15230237 None:intergenic 40.0%
!!! TGTTCAGTTTGTGGTTTTGG+AGG - chr5.2:15229356-15229375 MS.gene65339:CDS 40.0%
AGTGTTCATAGCATCCTCTG+AGG + chr5.2:15230107-15230126 None:intergenic 45.0%
ATCGAGTTCCGATTGGTGAA+TGG - chr5.2:15229438-15229457 MS.gene65339:CDS 45.0%
CAAACTCGCTTGAACTTTCG+TGG - chr5.2:15229884-15229903 MS.gene65339:CDS 45.0%
CAAGCAATGCAAGGCCATAT+AGG + chr5.2:15230244-15230263 None:intergenic 45.0%
CAGAGGATGCTATGAACACT+TGG - chr5.2:15230107-15230126 MS.gene65339:CDS 45.0%
CTGGGTTCGCATGATCATAA+AGG - chr5.2:15229218-15229237 MS.gene65339:CDS 45.0%
GATTGAGACCTAAACAACGG+AGG + chr5.2:15229421-15229440 None:intergenic 45.0%
GATTGTCAAAGGGAAGCTCT+GGG - chr5.2:15229200-15229219 MS.gene65339:CDS 45.0%
GCTACCCTGACAGAAAACAT+TGG + chr5.2:15229024-15229043 None:intergenic 45.0%
GGACAGAACCATTCACCAAT+CGG + chr5.2:15229449-15229468 None:intergenic 45.0%
GGTCGTTGTTGGATTGTCAA+AGG - chr5.2:15229189-15229208 MS.gene65339:CDS 45.0%
TCTTCGATACTGTTCCTTGG+TGG + chr5.2:15230005-15230024 None:intergenic 45.0%
! AGGGACCAATGTTTTCTGTC+AGG - chr5.2:15229016-15229035 MS.gene65339:CDS 45.0%
! GGCTCTTGGTGTATTGTATG+AGG - chr5.2:15229787-15229806 MS.gene65339:CDS 45.0%
! GGGACCAATGTTTTCTGTCA+GGG - chr5.2:15229017-15229036 MS.gene65339:CDS 45.0%
!!! TTGTGGTTTTGGAGGTGACT+TGG - chr5.2:15229364-15229383 MS.gene65339:CDS 45.0%
GCATTCCACCTCCGTTGTTT+AGG - chr5.2:15229410-15229429 MS.gene65339:CDS 50.0%
GGAAGATGGAAGGTCGTTGT+TGG - chr5.2:15229178-15229197 MS.gene65339:CDS 50.0%
GGATTGTCAAAGGGAAGCTC+TGG - chr5.2:15229199-15229218 MS.gene65339:CDS 50.0%
GGTCTCAATCGAGTTCCGAT+TGG - chr5.2:15229431-15229450 MS.gene65339:CDS 50.0%
TGAGACCTAAACAACGGAGG+TGG + chr5.2:15229418-15229437 None:intergenic 50.0%
TTTGGATGCGTAAAGGCCGT+AGG - chr5.2:15229575-15229594 MS.gene65339:CDS 50.0%
! GATAGTTTTCGTGGCCACCA+AGG - chr5.2:15229988-15230007 MS.gene65339:CDS 50.0%
ACCTGCATGAGACTCGAAGC+CGG + chr5.2:15229123-15229142 None:intergenic 55.0%
CAACGGAGGTGGAATGCAGA+AGG + chr5.2:15229407-15229426 None:intergenic 55.0%
! ACCGGCTTCGAGTCTCATGC+AGG - chr5.2:15229119-15229138 MS.gene65339:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 15228972 15230264 15228972 ID=MS.gene65339
chr5.2 mRNA 15228972 15230264 15228972 ID=MS.gene65339.t1;Parent=MS.gene65339
chr5.2 exon 15228972 15230264 15228972 ID=MS.gene65339.t1.exon1;Parent=MS.gene65339.t1
chr5.2 CDS 15228972 15230264 15228972 ID=cds.MS.gene65339.t1;Parent=MS.gene65339.t1
Gene Sequence

>MS.gene65339

ATGGGTATTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTTCAGGGACCAATGTTTTCTGTCAGGGTAGCAACAAAGTTGTCAAAAGAGGAAGTTTGTTTTCTGATGCTATAGTCTGTGATTGTTGTCGTGTTACTTTTACTATCACCGGCTTCGAGTCTCATGCAGGTTGTACAAGACATAGACCATCCACAAGTATCTTGTTGGAAGATGGAAGGTCGTTGTTGGATTGTCAAAGGGAAGCTCTGGGTTCGCATGATCATAAAGGGAATCATTGTGTTGTCAAAGAAAATCAAAAGAAGAATCATTCTATTGTCAAAGAAAATCGAAAGAAGAATCATTGTGCTGTCAAAGAAAAATCTGAAGCAAATAACGATAGTGTTTGTTCAGTTTGTGGTTTTGGAGGTGACTTGGCACTATGCGATCGATGTCCTTCTGCATTCCACCTCCGTTGTTTAGGTCTCAATCGAGTTCCGATTGGTGAATGGTTCTGTCCAACTTGTTGTTGCAAAATATGCTATCGACCCAAATGCAAACAAGAATGTGAAGATCACAAGGATAACCAGATTCTTGTTTGTGTTCAATGTGAGCAAAAATATCACTTTGGATGCGTAAAGGCCGTAGGAATTGAATTTGAATTTAATCACATGGAGAATTGGTTTTGCAGTGTAGTTTGTGGGAACATGTTCTTATGTCTAAAGAAGTTGTTAGGAAAACCAATCAAGGTTGCAGATAATCTAACATGGACATTGGTGAAGAATGTGAATAGTGTTGATGAAGAGGAGTTTAATCAAAAGGAGAGTAAGTTGAATATGGCTCTTGGTGTATTGTATGAGGGTTTTAATCCAACTTTTGATCCTTTATCAGGAAGAGAGTTGATTAAAGATGTTGTTTTTAGTAGAGAATCAGAACAAACTCGCTTGAACTTTCGTGGTTTCTATAATGTAATTTTGGAGAAAATGGGTGAAGTGATTTCAGTGGCAACTATAAGGATTTATGGTCAAAAAGTTGCAGAGATAGTTTTCGTGGCCACCAAGGAACAGTATCGAAGACAAGGAATGTGTCATTTGTTGATGGATGAGATTGAGAAACAGTTAACTCGCTTAGGAGTTGAGAAATTACTTCTGCATTCCTCAGAGGATGCTATGAACACTTGGACAAGATCATTTGGTTTTACTAGGATGAATAGTAAAGATAAGTGTCAGTTTATTGATCATACTTTTTTAGAATTTGAGAATGGTACCATGTGTCTCAAAGCACTGAAAAGACCTATATGGCCTTGCATTGCTTGA
Protein sequence

>MS.gene65339.t1

MGIVSWLIKNQVLVSGTNVFCQGSNKVVKRGSLFSDAIVCDCCRVTFTITGFESHAGCTRHRPSTSILLEDGRSLLDCQREALGSHDHKGNHCVVKENQKKNHSIVKENRKKNHCAVKEKSEANNDSVCSVCGFGGDLALCDRCPSAFHLRCLGLNRVPIGEWFCPTCCCKICYRPKCKQECEDHKDNQILVCVQCEQKYHFGCVKAVGIEFEFNHMENWFCSVVCGNMFLCLKKLLGKPIKVADNLTWTLVKNVNSVDEEEFNQKESKLNMALGVLYEGFNPTFDPLSGRELIKDVVFSRESEQTRLNFRGFYNVILEKMGEVISVATIRIYGQKVAEIVFVATKEQYRRQGMCHLLMDEIEKQLTRLGVEKLLLHSSEDAMNTWTRSFGFTRMNSKDKCQFIDHTFLEFENGTMCLKALKRPIWPCIA