AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65376

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65376.t1 MTR_5g099040 60.734 354 63 13 2 354 1 279 3.05e-111 325
MS.gene65376.t1 MTR_5g062300 60.067 298 38 11 2 296 1 220 2.90e-91 273
MS.gene65376.t1 MTR_4g109340 32.338 201 89 5 146 345 347 501 9.47e-19 87.8
MS.gene65376.t1 MTR_1g090703 30.890 191 91 5 147 337 156 305 3.42e-15 76.3
MS.gene65376.t1 MTR_4g027440 29.947 187 74 3 143 329 216 345 3.33e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65376.t1 AT4G35280 41.264 269 80 5 55 310 71 274 3.41e-57 187
MS.gene65376.t1 AT2G17180 38.816 304 82 9 59 354 63 270 2.04e-49 167
MS.gene65376.t1 AT5G56200 33.702 181 73 5 145 325 340 473 1.30e-14 75.1
MS.gene65376.t1 AT5G04390 27.799 259 112 9 109 329 96 317 7.41e-12 66.2
MS.gene65376.t1 AT1G02040 45.000 80 39 1 103 177 101 180 1.76e-11 65.1

Find 101 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCTTGTTCTTGTTCTT+TGG 0.171298 5.2:-83768844 None:intergenic
AAAAGATGTCATTGGGAAAA+AGG 0.213817 5.2:+83769300 MS.gene65376:CDS
TCTTCTTCATCTGTTGTTAC+TGG 0.243410 5.2:+83768562 MS.gene65376:CDS
TCGTGTTGCAACAAAGTATT+TGG 0.254538 5.2:+83768919 MS.gene65376:CDS
GCAGCACCTTCCTGTTCTTC+TGG 0.259557 5.2:-83768793 None:intergenic
AGTTGTGGTCTTCTGAAATT+AGG 0.270404 5.2:-83768754 None:intergenic
ACCCCTCAAGGAATTGAAAT+TGG 0.276138 5.2:+83769045 MS.gene65376:CDS
CTCCCCTCAGCCTTGATTTG+AGG 0.284244 5.2:+83769502 MS.gene65376:CDS
CTCAGCCTTGATTTGAGGTT+GGG 0.292402 5.2:+83769507 MS.gene65376:CDS
CTGAATGCGGTAAGATATTC+TGG 0.313666 5.2:+83768662 MS.gene65376:CDS
CAAGGAATTGAAATTGGAAT+TGG 0.314485 5.2:+83769051 MS.gene65376:CDS
TCAGGAGGTGGTGGTGGAAA+AGG 0.369982 5.2:-83769450 None:intergenic
CCTCAGCCTTGATTTGAGGT+TGG 0.373861 5.2:+83769506 MS.gene65376:CDS
GTCTGAGGCACCATGATCAT+TGG 0.382607 5.2:-83769111 None:intergenic
AGCGGTTATTGTTGTTGTAT+TGG 0.394693 5.2:-83769001 None:intergenic
ACTACTAGACTTGTTGTTGT+TGG 0.399673 5.2:-83769400 None:intergenic
GTTGTTGTTGTTGCAACTGC+TGG 0.407044 5.2:-83768865 None:intergenic
AGGAAGAAGCGTAAGGAATT+CGG 0.426927 5.2:+83768586 MS.gene65376:CDS
GGAATTGAAATTGGAATTGG+AGG 0.436485 5.2:+83769054 MS.gene65376:CDS
GTGGTCACAAAAGATGTCAT+TGG 0.437408 5.2:+83769292 MS.gene65376:CDS
AAGCGTAAGGAATTCGGCTC+CGG 0.438803 5.2:+83768592 MS.gene65376:CDS
TACCGCCACTCCAGAAGAAC+AGG 0.447380 5.2:+83768783 MS.gene65376:CDS
CAAAGTATTTGGATCTCATC+AGG 0.456499 5.2:+83768930 MS.gene65376:CDS
GCTGAGGGGAGAAGAAGAAT+CGG 0.458860 5.2:-83769490 None:intergenic
ATTCCTCTCCATTGACGCTC+AGG 0.461015 5.2:-83768721 None:intergenic
AATTCCTTGAGGGGTACTGC+TGG 0.461824 5.2:-83769037 None:intergenic
TGTTTGAGGGTATTCACCTC+TGG 0.465821 5.2:+83769258 MS.gene65376:CDS
CAGGAGGTGGTGGTGGAAAA+GGG 0.474090 5.2:-83769449 None:intergenic
TTCCAATTTCAATTCCTTGA+GGG 0.480651 5.2:-83769047 None:intergenic
AACAATAACAATAACAATGT+TGG 0.482830 5.2:+83769156 MS.gene65376:CDS
TGGTCACAAAAGATGTCATT+GGG 0.485006 5.2:+83769293 MS.gene65376:CDS
TCCGGGGAATCATCATCATC+TGG 0.485557 5.2:+83768610 MS.gene65376:CDS
TCTGAGGCACCATGATCATT+GGG 0.496728 5.2:-83769110 None:intergenic
AGCGTAAGGAATTCGGCTCC+GGG 0.496896 5.2:+83768593 MS.gene65376:CDS
GGATGATGATGATCATCATC+AGG 0.497322 5.2:-83769468 None:intergenic
TCATCATCAGGAGGTGGTGG+TGG 0.505330 5.2:-83769456 None:intergenic
ATTGAAATTGGAATTGGAGG+AGG 0.508348 5.2:+83769057 MS.gene65376:CDS
CGATGACAACCCAATGATCA+TGG 0.510935 5.2:+83769101 MS.gene65376:CDS
TGGAAACGTGGAAGGGGAAG+CGG 0.512114 5.2:+83769179 MS.gene65376:CDS
GGATCTCATCAGGCACTTGG+AGG 0.512393 5.2:+83768940 MS.gene65376:CDS
GTTGTCATCCTGAGCGTCAA+TGG 0.514198 5.2:+83768713 MS.gene65376:CDS
AAAGTCCCAACCTCAAATCA+AGG 0.519574 5.2:-83769512 None:intergenic
ACCTTCCTGTTCTTCTGGAG+TGG 0.519585 5.2:-83768788 None:intergenic
ACAAGTGTAGCATATGTTTG+AGG 0.520240 5.2:+83769244 MS.gene65376:CDS
AATAACAATAACAATGTTGG+TGG 0.522015 5.2:+83769159 MS.gene65376:CDS
CTTCATCTGTTGTTACTGGT+AGG 0.523744 5.2:+83768566 MS.gene65376:CDS
TTTGGATCTCATCAGGCACT+TGG 0.527004 5.2:+83768937 MS.gene65376:CDS
CCTCAGACTCGTGGTGGTGA+CGG 0.528908 5.2:+83769126 MS.gene65376:CDS
TCCAATTTCAATTCCTTGAG+GGG 0.531505 5.2:-83769046 None:intergenic
TCGAATGGTAATGTTGTTGA+TGG 0.537184 5.2:-83769336 None:intergenic
CTGAGGGGAGAAGAAGAATC+GGG 0.541339 5.2:-83769489 None:intergenic
TGTGGTCTTCTGAAATTAGG+AGG 0.542449 5.2:-83768751 None:intergenic
GCGGTAAGATATTCTGGTCA+TGG 0.544652 5.2:+83768668 MS.gene65376:CDS
ATCAGGCACTTGGAGGACAC+AGG 0.546807 5.2:+83768947 MS.gene65376:CDS
ACCAGATGATGATGATTCCC+CGG 0.553428 5.2:-83768611 None:intergenic
CAAGTGTAGCATATGTTTGA+GGG 0.557225 5.2:+83769245 MS.gene65376:CDS
GTCTTCTGAAATTAGGAGGA+GGG 0.563842 5.2:-83768747 None:intergenic
CCAACCTCAAATCAAGGCTG+AGG 0.568598 5.2:-83769506 None:intergenic
TTCACCTCTGGACAAGCACT+CGG 0.569437 5.2:+83769270 MS.gene65376:CDS
TTGATCACCACTACTATGAT+CGG 0.573143 5.2:-83768503 None:intergenic
TGTTGGTGGAAACGTGGAAG+GGG 0.573504 5.2:+83769173 MS.gene65376:CDS
GGTCTTCTGAAATTAGGAGG+AGG 0.578908 5.2:-83768748 None:intergenic
TAATGTTGTTGATGGTGTGG+TGG 0.579959 5.2:-83769328 None:intergenic
GAGCACAAGTATATGATGAA+AGG 0.580008 5.2:+83768460 None:intergenic
CACAAGTATATGATGAAAGG+TGG 0.583701 5.2:+83768463 None:intergenic
TTCCTGTTCTTCTGGAGTGG+CGG 0.584612 5.2:-83768785 None:intergenic
TGCAGTTGCAGTTGCAGTTG+CGG 0.585594 5.2:-83769370 None:intergenic
GGCTAGTCACAAGAATGTCA+AGG 0.586833 5.2:+83768969 MS.gene65376:CDS
AATGTTGGTGGAAACGTGGA+AGG 0.586957 5.2:+83769171 MS.gene65376:CDS
AATAACGAAATCATAAGCAT+CGG 0.587279 5.2:+83769213 MS.gene65376:CDS
CAACCTCAAATCAAGGCTGA+GGG 0.588474 5.2:-83769505 None:intergenic
TAAGATATTCTGGTCATGGA+AGG 0.594766 5.2:+83768672 MS.gene65376:CDS
ATTCCAATTTCAATTCCTTG+AGG 0.595146 5.2:-83769048 None:intergenic
AACGAAATCATAAGCATCGG+AGG 0.603782 5.2:+83769216 MS.gene65376:CDS
CCGTCACCACCACGAGTCTG+AGG 0.606419 5.2:-83769126 None:intergenic
GAAATCATAAGCATCGGAGG+AGG 0.616674 5.2:+83769219 MS.gene65376:CDS
TGGACCAGCAGTACCCCTCA+AGG 0.619084 5.2:+83769033 MS.gene65376:CDS
TACTGGTAGGAAGAAGCGTA+AGG 0.619515 5.2:+83768579 MS.gene65376:CDS
TGGTAATGTTGTTGATGGTG+TGG 0.620418 5.2:-83769331 None:intergenic
TGATCATCATCAGGAGGTGG+TGG 0.630508 5.2:-83769459 None:intergenic
ATGTTGGTGGAAACGTGGAA+GGG 0.632193 5.2:+83769172 MS.gene65376:CDS
GCTAGTCACAAGAATGTCAA+GGG 0.632503 5.2:+83768970 MS.gene65376:CDS
CATCCTGAGCGTCAATGGAG+AGG 0.633209 5.2:+83768718 MS.gene65376:CDS
TAACAATGTTGGTGGAAACG+TGG 0.636140 5.2:+83769167 MS.gene65376:CDS
GCTCGTAGTTGCACTGAATG+CGG 0.637940 5.2:+83768649 MS.gene65376:CDS
AATTCATCCGATCATAGTAG+TGG 0.640729 5.2:+83768496 MS.gene65376:CDS
TCAGGCACTTGGAGGACACA+GGG 0.641355 5.2:+83768948 MS.gene65376:CDS
CAATAACCGCTTCTTCTACG+TGG 0.643180 5.2:+83769013 MS.gene65376:CDS
GCGGTAGAAGAAGAATCGAA+TGG 0.655654 5.2:-83769351 None:intergenic
GTGGCGGTATTGATGAGTTG+TGG 0.655830 5.2:-83768769 None:intergenic
GCTGGTCCACGTAGAAGAAG+CGG 0.656413 5.2:-83769019 None:intergenic
ATCATGGTGCCTCAGACTCG+TGG 0.664991 5.2:+83769117 MS.gene65376:CDS
ACCTCTGGACAAGCACTCGG+TGG 0.666232 5.2:+83769273 MS.gene65376:CDS
ACAACAGATGAAGAAGAACA+TGG 0.667372 5.2:-83768556 None:intergenic
TGATGATCATCATCAGGAGG+TGG 0.671628 5.2:-83769462 None:intergenic
AACCTCAAATCAAGGCTGAG+GGG 0.678963 5.2:-83769504 None:intergenic
TGATGATGATCATCATCAGG+AGG 0.687105 5.2:-83769465 None:intergenic
GCGTAAGGAATTCGGCTCCG+GGG 0.689557 5.2:+83768594 MS.gene65376:CDS
ACCACCGAGTGCTTGTCCAG+AGG 0.705617 5.2:-83769274 None:intergenic
ATGGTGCCTCAGACTCGTGG+TGG 0.717787 5.2:+83769120 MS.gene65376:CDS
GCCACTCCAGAAGAACAGGA+AGG 0.725655 5.2:+83768787 MS.gene65376:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAACAATAACAATGT+TGG + chr5.2:83769156-83769175 MS.gene65376:CDS 20.0%
! AATAACAATAACAATGTTGG+TGG + chr5.2:83769159-83769178 MS.gene65376:CDS 25.0%
! AATAACGAAATCATAAGCAT+CGG + chr5.2:83769213-83769232 MS.gene65376:CDS 25.0%
AAAAGATGTCATTGGGAAAA+AGG + chr5.2:83769300-83769319 MS.gene65376:CDS 30.0%
AAAGATGTCATTGGGAAAAA+GGG + chr5.2:83769301-83769320 MS.gene65376:CDS 30.0%
ATTCCAATTTCAATTCCTTG+AGG - chr5.2:83769051-83769070 None:intergenic 30.0%
CAAGGAATTGAAATTGGAAT+TGG + chr5.2:83769051-83769070 MS.gene65376:CDS 30.0%
TTCCAATTTCAATTCCTTGA+GGG - chr5.2:83769050-83769069 None:intergenic 30.0%
AAGATGTCATTGGGAAAAAG+GGG + chr5.2:83769302-83769321 MS.gene65376:CDS 35.0%
AATTCATCCGATCATAGTAG+TGG + chr5.2:83768496-83768515 MS.gene65376:CDS 35.0%
ACAACAGATGAAGAAGAACA+TGG - chr5.2:83768559-83768578 None:intergenic 35.0%
ACAAGTGTAGCATATGTTTG+AGG + chr5.2:83769244-83769263 MS.gene65376:CDS 35.0%
ATTGAAATTGGAATTGGAGG+AGG + chr5.2:83769057-83769076 MS.gene65376:CDS 35.0%
CAAGTGTAGCATATGTTTGA+GGG + chr5.2:83769245-83769264 MS.gene65376:CDS 35.0%
GGAATTGAAATTGGAATTGG+AGG + chr5.2:83769054-83769073 MS.gene65376:CDS 35.0%
GGTTTCTTGTTCTTGTTCTT+TGG - chr5.2:83768847-83768866 None:intergenic 35.0%
TAAGATATTCTGGTCATGGA+AGG + chr5.2:83768672-83768691 MS.gene65376:CDS 35.0%
TCCAATTTCAATTCCTTGAG+GGG - chr5.2:83769049-83769068 None:intergenic 35.0%
TCTTCTTCATCTGTTGTTAC+TGG + chr5.2:83768562-83768581 MS.gene65376:CDS 35.0%
TGCAACAACAACAACAACAA+CGG + chr5.2:83768873-83768892 MS.gene65376:CDS 35.0%
TGGTCACAAAAGATGTCATT+GGG + chr5.2:83769293-83769312 MS.gene65376:CDS 35.0%
TTGATCACCACTACTATGAT+CGG - chr5.2:83768506-83768525 None:intergenic 35.0%
! AGCGGTTATTGTTGTTGTAT+TGG - chr5.2:83769004-83769023 None:intergenic 35.0%
! CAAAGTATTTGGATCTCATC+AGG + chr5.2:83768930-83768949 MS.gene65376:CDS 35.0%
! TCGAATGGTAATGTTGTTGA+TGG - chr5.2:83769339-83769358 None:intergenic 35.0%
! TCGTGTTGCAACAAAGTATT+TGG + chr5.2:83768919-83768938 MS.gene65376:CDS 35.0%
!! ACTACTAGACTTGTTGTTGT+TGG - chr5.2:83769403-83769422 None:intergenic 35.0%
!! AGTTGTGGTCTTCTGAAATT+AGG - chr5.2:83768757-83768776 None:intergenic 35.0%
AAAGTCCCAACCTCAAATCA+AGG - chr5.2:83769515-83769534 None:intergenic 40.0%
AACAACAACAACAACAACGG+TGG + chr5.2:83768876-83768895 MS.gene65376:CDS 40.0%
ACCCCTCAAGGAATTGAAAT+TGG + chr5.2:83769045-83769064 MS.gene65376:CDS 40.0%
CTGAATGCGGTAAGATATTC+TGG + chr5.2:83768662-83768681 MS.gene65376:CDS 40.0%
CTTCATCTGTTGTTACTGGT+AGG + chr5.2:83768566-83768585 MS.gene65376:CDS 40.0%
GCTAGTCACAAGAATGTCAA+GGG + chr5.2:83768970-83768989 MS.gene65376:CDS 40.0%
GTGGTCACAAAAGATGTCAT+TGG + chr5.2:83769292-83769311 MS.gene65376:CDS 40.0%
! AGGAAGAAGCGTAAGGAATT+CGG + chr5.2:83768586-83768605 MS.gene65376:CDS 40.0%
! GGATGATGATGATCATCATC+AGG - chr5.2:83769471-83769490 None:intergenic 40.0%
! TAACAATGTTGGTGGAAACG+TGG + chr5.2:83769167-83769186 MS.gene65376:CDS 40.0%
! TGATGATGATCATCATCAGG+AGG - chr5.2:83769468-83769487 None:intergenic 40.0%
!! AACGAAATCATAAGCATCGG+AGG + chr5.2:83769216-83769235 MS.gene65376:CDS 40.0%
!! GTCTTCTGAAATTAGGAGGA+GGG - chr5.2:83768750-83768769 None:intergenic 40.0%
!! TAATGTTGTTGATGGTGTGG+TGG - chr5.2:83769331-83769350 None:intergenic 40.0%
!! TGGTAATGTTGTTGATGGTG+TGG - chr5.2:83769334-83769353 None:intergenic 40.0%
!! TGTGGTCTTCTGAAATTAGG+AGG - chr5.2:83768754-83768773 None:intergenic 40.0%
AACAACAACAACAACGGTGG+TGG + chr5.2:83768879-83768898 MS.gene65376:CDS 45.0%
AACCTCAAATCAAGGCTGAG+GGG - chr5.2:83769507-83769526 None:intergenic 45.0%
CAACCTCAAATCAAGGCTGA+GGG - chr5.2:83769508-83769527 None:intergenic 45.0%
CAATAACCGCTTCTTCTACG+TGG + chr5.2:83769013-83769032 MS.gene65376:CDS 45.0%
CGATGACAACCCAATGATCA+TGG + chr5.2:83769101-83769120 MS.gene65376:CDS 45.0%
GCGGTAAGATATTCTGGTCA+TGG + chr5.2:83768668-83768687 MS.gene65376:CDS 45.0%
GCGGTAGAAGAAGAATCGAA+TGG - chr5.2:83769354-83769373 None:intergenic 45.0%
TGATGATCATCATCAGGAGG+TGG - chr5.2:83769465-83769484 None:intergenic 45.0%
TTTGGATCTCATCAGGCACT+TGG + chr5.2:83768937-83768956 MS.gene65376:CDS 45.0%
! AATGTTGGTGGAAACGTGGA+AGG + chr5.2:83769171-83769190 MS.gene65376:CDS 45.0%
! ACCAGATGATGATGATTCCC+CGG - chr5.2:83768614-83768633 None:intergenic 45.0%
! ATGTTGGTGGAAACGTGGAA+GGG + chr5.2:83769172-83769191 MS.gene65376:CDS 45.0%
! CTCAGCCTTGATTTGAGGTT+GGG + chr5.2:83769507-83769526 MS.gene65376:CDS 45.0%
! GGCTAGTCACAAGAATGTCA+AGG + chr5.2:83768969-83768988 MS.gene65376:CDS 45.0%
! GTTGTTGTTGTTGCAACTGC+TGG - chr5.2:83768868-83768887 None:intergenic 45.0%
! TACTGGTAGGAAGAAGCGTA+AGG + chr5.2:83768579-83768598 MS.gene65376:CDS 45.0%
! TCTGAGGCACCATGATCATT+GGG - chr5.2:83769113-83769132 None:intergenic 45.0%
! TGGTCATGGAAGGCTCTTTT+CGG + chr5.2:83768682-83768701 MS.gene65376:CDS 45.0%
!! GAAATCATAAGCATCGGAGG+AGG + chr5.2:83769219-83769238 MS.gene65376:CDS 45.0%
!! GGTCTTCTGAAATTAGGAGG+AGG - chr5.2:83768751-83768770 None:intergenic 45.0%
!! TGTTTGAGGGTATTCACCTC+TGG + chr5.2:83769258-83769277 MS.gene65376:CDS 45.0%
AAGCGTAAGGAATTCGGCTC+CGG + chr5.2:83768592-83768611 MS.gene65376:CDS 50.0%
ATTCCTCTCCATTGACGCTC+AGG - chr5.2:83768724-83768743 None:intergenic 50.0%
CCAACCTCAAATCAAGGCTG+AGG - chr5.2:83769509-83769528 None:intergenic 50.0%
CTGAGGGGAGAAGAAGAATC+GGG - chr5.2:83769492-83769511 None:intergenic 50.0%
GCTCGTAGTTGCACTGAATG+CGG + chr5.2:83768649-83768668 MS.gene65376:CDS 50.0%
GCTGAGGGGAGAAGAAGAAT+CGG - chr5.2:83769493-83769512 None:intergenic 50.0%
GTTGTCATCCTGAGCGTCAA+TGG + chr5.2:83768713-83768732 MS.gene65376:CDS 50.0%
TCCGGGGAATCATCATCATC+TGG + chr5.2:83768610-83768629 MS.gene65376:CDS 50.0%
TGATCATCATCAGGAGGTGG+TGG - chr5.2:83769462-83769481 None:intergenic 50.0%
TGCAGTTGCAGTTGCAGTTG+CGG - chr5.2:83769373-83769392 None:intergenic 50.0%
TTCACCTCTGGACAAGCACT+CGG + chr5.2:83769270-83769289 MS.gene65376:CDS 50.0%
! ACCTTCCTGTTCTTCTGGAG+TGG - chr5.2:83768791-83768810 None:intergenic 50.0%
! CCTCAGCCTTGATTTGAGGT+TGG + chr5.2:83769506-83769525 MS.gene65376:CDS 50.0%
! GTCTGAGGCACCATGATCAT+TGG - chr5.2:83769114-83769133 None:intergenic 50.0%
! TGTTGGTGGAAACGTGGAAG+GGG + chr5.2:83769173-83769192 MS.gene65376:CDS 50.0%
!! AATTCCTTGAGGGGTACTGC+TGG - chr5.2:83769040-83769059 None:intergenic 50.0%
!! GTGGCGGTATTGATGAGTTG+TGG - chr5.2:83768772-83768791 None:intergenic 50.0%
!! TTCCTGTTCTTCTGGAGTGG+CGG - chr5.2:83768788-83768807 None:intergenic 50.0%
AGCGTAAGGAATTCGGCTCC+GGG + chr5.2:83768593-83768612 MS.gene65376:CDS 55.0%
ATCAGGCACTTGGAGGACAC+AGG + chr5.2:83768947-83768966 MS.gene65376:CDS 55.0%
ATCATGGTGCCTCAGACTCG+TGG + chr5.2:83769117-83769136 MS.gene65376:CDS 55.0%
CATCCTGAGCGTCAATGGAG+AGG + chr5.2:83768718-83768737 MS.gene65376:CDS 55.0%
GCAGCACCTTCCTGTTCTTC+TGG - chr5.2:83768796-83768815 None:intergenic 55.0%
GCCACTCCAGAAGAACAGGA+AGG + chr5.2:83768787-83768806 MS.gene65376:CDS 55.0%
GCTGGTCCACGTAGAAGAAG+CGG - chr5.2:83769022-83769041 None:intergenic 55.0%
GGATCTCATCAGGCACTTGG+AGG + chr5.2:83768940-83768959 MS.gene65376:CDS 55.0%
TACCGCCACTCCAGAAGAAC+AGG + chr5.2:83768783-83768802 MS.gene65376:CDS 55.0%
TCAGGCACTTGGAGGACACA+GGG + chr5.2:83768948-83768967 MS.gene65376:CDS 55.0%
TGGAAACGTGGAAGGGGAAG+CGG + chr5.2:83769179-83769198 MS.gene65376:CDS 55.0%
! CTCCCCTCAGCCTTGATTTG+AGG + chr5.2:83769502-83769521 MS.gene65376:CDS 55.0%
! TCATCATCAGGAGGTGGTGG+TGG - chr5.2:83769459-83769478 None:intergenic 55.0%
!! CAGGAGGTGGTGGTGGAAAA+GGG - chr5.2:83769452-83769471 None:intergenic 55.0%
!! TCAGGAGGTGGTGGTGGAAA+AGG - chr5.2:83769453-83769472 None:intergenic 55.0%
ACCACCGAGTGCTTGTCCAG+AGG - chr5.2:83769277-83769296 None:intergenic 60.0%
ACCTCTGGACAAGCACTCGG+TGG + chr5.2:83769273-83769292 MS.gene65376:CDS 60.0%
ATGGTGCCTCAGACTCGTGG+TGG + chr5.2:83769120-83769139 MS.gene65376:CDS 60.0%
GCGTAAGGAATTCGGCTCCG+GGG + chr5.2:83768594-83768613 MS.gene65376:CDS 60.0%
TGGACCAGCAGTACCCCTCA+AGG + chr5.2:83769033-83769052 MS.gene65376:CDS 60.0%
! CCTCAGACTCGTGGTGGTGA+CGG + chr5.2:83769126-83769145 MS.gene65376:CDS 60.0%
CCGTCACCACCACGAGTCTG+AGG - chr5.2:83769129-83769148 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 83768472 83769536 83768472 ID=MS.gene65376
chr5.2 mRNA 83768472 83769536 83768472 ID=MS.gene65376.t1;Parent=MS.gene65376
chr5.2 exon 83768472 83769536 83768472 ID=MS.gene65376.t1.exon1;Parent=MS.gene65376.t1
chr5.2 CDS 83768472 83769536 83768472 ID=cds.MS.gene65376.t1;Parent=MS.gene65376.t1
Gene Sequence

>MS.gene65376

ATGATGAAAGGTGGAGATAATAATAATTCATCCGATCATAGTAGTGGTGATCAATACAAGATGAAAGATCATCATCAACATCGTCCATGTTCTTCTTCATCTGTTGTTACTGGTAGGAAGAAGCGTAAGGAATTCGGCTCCGGGGAATCATCATCATCTGGTAATAACAACAACATTGCTCGTAGTTGCACTGAATGCGGTAAGATATTCTGGTCATGGAAGGCTCTTTTCGGTCACATGCGTTGTCATCCTGAGCGTCAATGGAGAGGAATTAACCCTCCTCCTAATTTCAGAAGACCACAACTCATCAATACCGCCACTCCAGAAGAACAGGAAGGTGCTGCTTCTTTGCTCTTACTTGCAAATTCAAATCCAAAGAACAAGAACAAGAAACCAGCAGTTGCAACAACAACAACAACAACGGTGGTGGATGATCAGTTTGTGTGTTCGTGTTGCAACAAAGTATTTGGATCTCATCAGGCACTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTCGCCAATACAACAACAATAACCGCTTCTTCTACGTGGACCAGCAGTACCCCTCAAGGAATTGAAATTGGAATTGGAGGAGGAGATCATGCTTCTGTTGATCACGATGACAACCCAATGATCATGGTGCCTCAGACTCGTGGTGGTGACGGTTATAATAACAATAACAATAACAATGTTGGTGGAAACGTGGAAGGGGAAGCGGTTAATAGCAGTAATAACGAAATCATAAGCATCGGAGGAGGACACAAGTGTAGCATATGTTTGAGGGTATTCACCTCTGGACAAGCACTCGGTGGTCACAAAAGATGTCATTGGGAAAAAGGGGAAACCACCACACCATCAACAACATTACCATTCGATTCTTCTTCTACCGCAACTGCAACTGCAACTGCAACAACATCCAACAACAACAAGTCTAGTAGTGTTGTTAATGTCGTTGATTTGAATTTCCCTTTTCCACCACCACCTCCTGATGATGATCATCATCATCCCGATTCTTCTTCTCCCCTCAGCCTTGATTTGAGGTTGGGACTTTAA
Protein sequence

>MS.gene65376.t1

MMKGGDNNNSSDHSSGDQYKMKDHHQHRPCSSSSVVTGRKKRKEFGSGESSSSGNNNNIARSCTECGKIFWSWKALFGHMRCHPERQWRGINPPPNFRRPQLINTATPEEQEGAASLLLLANSNPKNKNKKPAVATTTTTTVVDDQFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTITASSTWTSSTPQGIEIGIGGGDHASVDHDDNPMIMVPQTRGGDGYNNNNNNNVGGNVEGEAVNSSNNEIISIGGGHKCSICLRVFTSGQALGGHKRCHWEKGETTTPSTTLPFDSSSTATATATATTSNNNKSSSVVNVVDLNFPFPPPPPDDDHHHPDSSSPLSLDLRLGL