Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65528.t1 | GAU12310.1 | 51.8 | 722 | 175 | 4 | 35 | 583 | 82 | 803 | 2.30E-186 | 662.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65528.t1 | Q9SZL8 | 23.6 | 713 | 350 | 12 | 30 | 562 | 59 | 756 | 3.7e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65528.t1 | A0A2K3L9Y4 | 46.0 | 702 | 197 | 7 | 48 | 577 | 1 | 692 | 2.2e-154 | 555.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65528.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65528.t1 | MTR_0853s0010 | 95.570 | 158 | 7 | 0 | 20 | 177 | 1 | 158 | 5.02e-109 | 324 |
| MS.gene65528.t1 | MTR_0734s0010 | 50.532 | 188 | 86 | 4 | 399 | 581 | 1 | 186 | 1.49e-53 | 181 |
| MS.gene65528.t1 | MTR_1g019850 | 53.571 | 168 | 65 | 3 | 18 | 179 | 38 | 198 | 8.48e-51 | 175 |
| MS.gene65528.t1 | MTR_3g020080 | 48.485 | 99 | 30 | 2 | 224 | 318 | 3 | 84 | 6.11e-21 | 89.7 |
| MS.gene65528.t1 | MTR_2g024230 | 55.224 | 67 | 30 | 0 | 37 | 103 | 83 | 149 | 2.88e-19 | 85.5 |
| MS.gene65528.t1 | MTR_4g035820 | 25.000 | 376 | 215 | 14 | 29 | 349 | 61 | 424 | 3.54e-17 | 85.5 |
| MS.gene65528.t1 | MTR_1g033820 | 53.571 | 56 | 26 | 0 | 32 | 87 | 15 | 70 | 3.19e-15 | 71.6 |
| MS.gene65528.t1 | MTR_8g465780 | 30.667 | 150 | 92 | 3 | 245 | 391 | 1 | 141 | 5.91e-14 | 70.9 |
| MS.gene65528.t1 | MTR_6g048540 | 48.052 | 77 | 37 | 2 | 35 | 108 | 19 | 95 | 1.21e-12 | 68.2 |
| MS.gene65528.t1 | MTR_6g048540 | 45.000 | 80 | 43 | 1 | 407 | 485 | 106 | 185 | 2.84e-12 | 67.4 |
| MS.gene65528.t1 | MTR_8g466860 | 73.684 | 38 | 10 | 0 | 239 | 276 | 81 | 118 | 2.00e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65528.t1 | AT4G38180 | 41.121 | 214 | 126 | 0 | 223 | 436 | 425 | 638 | 3.33e-54 | 197 |
| MS.gene65528.t1 | AT4G38180 | 27.979 | 193 | 121 | 7 | 41 | 221 | 70 | 256 | 2.35e-14 | 77.0 |
| MS.gene65528.t1 | AT4G38170 | 35.688 | 269 | 168 | 2 | 223 | 489 | 190 | 455 | 7.58e-53 | 189 |
| MS.gene65528.t1 | AT2G27110 | 38.756 | 209 | 126 | 1 | 223 | 431 | 227 | 433 | 3.99e-47 | 176 |
| MS.gene65528.t1 | AT2G27110 | 38.756 | 209 | 126 | 1 | 223 | 431 | 372 | 578 | 7.62e-47 | 177 |
| MS.gene65528.t1 | AT2G27110 | 38.756 | 209 | 126 | 1 | 223 | 431 | 372 | 578 | 7.62e-47 | 177 |
| MS.gene65528.t1 | AT4G15090 | 38.532 | 218 | 129 | 3 | 223 | 438 | 401 | 615 | 3.85e-45 | 171 |
| MS.gene65528.t1 | AT4G15090 | 38.532 | 218 | 129 | 3 | 223 | 438 | 401 | 615 | 3.85e-45 | 171 |
| MS.gene65528.t1 | AT4G15090 | 38.532 | 218 | 129 | 3 | 223 | 438 | 401 | 615 | 3.85e-45 | 171 |
| MS.gene65528.t1 | AT4G15090 | 38.532 | 218 | 129 | 3 | 223 | 438 | 401 | 615 | 3.85e-45 | 171 |
| MS.gene65528.t1 | AT4G15090 | 38.532 | 218 | 129 | 3 | 223 | 438 | 401 | 615 | 3.85e-45 | 171 |
| MS.gene65528.t1 | AT3G06250 | 33.473 | 239 | 150 | 2 | 223 | 461 | 498 | 727 | 1.56e-38 | 152 |
| MS.gene65528.t1 | AT3G06250 | 33.473 | 239 | 150 | 2 | 223 | 461 | 498 | 727 | 1.56e-38 | 152 |
| MS.gene65528.t1 | AT3G06250 | 33.473 | 239 | 150 | 2 | 223 | 461 | 498 | 727 | 1.56e-38 | 152 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 349 | 558 | 9.27e-38 | 149 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 349 | 558 | 9.27e-38 | 149 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 292 | 501 | 1.17e-37 | 149 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 349 | 558 | 1.26e-37 | 149 |
| MS.gene65528.t1 | AT3G22170 | 34.928 | 209 | 135 | 1 | 223 | 431 | 410 | 617 | 1.37e-37 | 149 |
| MS.gene65528.t1 | AT3G22170 | 34.928 | 209 | 135 | 1 | 223 | 431 | 410 | 617 | 1.37e-37 | 149 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 349 | 558 | 1.39e-37 | 149 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 349 | 558 | 1.39e-37 | 149 |
| MS.gene65528.t1 | AT5G18960 | 35.514 | 214 | 135 | 1 | 223 | 436 | 522 | 732 | 1.47e-37 | 149 |
| MS.gene65528.t1 | AT5G18960 | 35.514 | 214 | 135 | 1 | 223 | 436 | 522 | 732 | 1.47e-37 | 149 |
| MS.gene65528.t1 | AT4G19990 | 38.389 | 211 | 127 | 3 | 223 | 431 | 363 | 572 | 1.51e-37 | 149 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 344 | 553 | 2.41e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 344 | 553 | 2.41e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 344 | 553 | 2.52e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 344 | 553 | 2.52e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 344 | 553 | 2.52e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 303 | 512 | 2.59e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 344 | 553 | 2.88e-36 | 145 |
| MS.gene65528.t1 | AT2G32250 | 33.649 | 211 | 139 | 1 | 222 | 432 | 303 | 512 | 3.00e-36 | 145 |
| MS.gene65528.t1 | AT1G76320 | 33.333 | 237 | 151 | 3 | 197 | 431 | 312 | 543 | 1.17e-34 | 140 |
| MS.gene65528.t1 | AT1G76320 | 33.333 | 237 | 151 | 3 | 197 | 431 | 312 | 543 | 1.22e-34 | 140 |
| MS.gene65528.t1 | AT1G76320 | 33.333 | 237 | 151 | 3 | 197 | 431 | 312 | 543 | 1.22e-34 | 140 |
| MS.gene65528.t1 | AT1G76320 | 33.333 | 237 | 151 | 3 | 197 | 431 | 312 | 543 | 2.08e-34 | 139 |
| MS.gene65528.t1 | AT1G52520 | 33.333 | 216 | 136 | 4 | 223 | 430 | 421 | 636 | 1.77e-30 | 127 |
| MS.gene65528.t1 | AT1G80010 | 31.651 | 218 | 137 | 5 | 223 | 431 | 446 | 660 | 3.62e-29 | 123 |
| MS.gene65528.t1 | AT1G10240 | 30.000 | 210 | 136 | 3 | 223 | 429 | 403 | 604 | 8.26e-25 | 109 |
| MS.gene65528.t1 | AT1G10240 | 30.000 | 210 | 136 | 3 | 223 | 429 | 403 | 604 | 8.26e-25 | 109 |
| MS.gene65528.t1 | AT5G28530 | 23.048 | 269 | 191 | 5 | 223 | 491 | 355 | 607 | 4.57e-15 | 79.0 |
| MS.gene65528.t1 | AT5G28530 | 23.048 | 269 | 195 | 5 | 223 | 491 | 355 | 611 | 7.05e-15 | 78.2 |
| MS.gene65528.t1 | AT5G28530 | 23.048 | 269 | 191 | 5 | 223 | 491 | 418 | 670 | 9.76e-15 | 78.2 |
| MS.gene65528.t1 | AT5G28530 | 23.048 | 269 | 191 | 5 | 223 | 491 | 418 | 670 | 9.76e-15 | 78.2 |
| MS.gene65528.t1 | AT5G28530 | 23.048 | 269 | 195 | 5 | 223 | 491 | 418 | 674 | 1.28e-14 | 77.8 |
Find 63 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCAGCATTTGATTT+TGG | 0.146038 | 6.4:+6210054 | None:intergenic |
| TTGTCAACTTTATGAATTTA+TGG | 0.151879 | 6.4:-6208261 | MS.gene65528:CDS |
| AATCATATTTAACCATTATT+TGG | 0.161348 | 6.4:+6208753 | None:intergenic |
| AAACATCTTTAAGAAGTTTC+AGG | 0.189455 | 6.4:-6208429 | MS.gene65528:CDS |
| CCTTTAGTTTGTGCCATTAT+CGG | 0.234963 | 6.4:+6207861 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 6.4:-6209815 | MS.gene65528:CDS |
| TTCATTAATACCACATATAA+TGG | 0.245994 | 6.4:+6208136 | None:intergenic |
| TCTTTCGGAGTCCATCATTC+TGG | 0.292595 | 6.4:+6207968 | None:intergenic |
| AATAATGGTTAAATATGATT+TGG | 0.302795 | 6.4:-6208750 | MS.gene65528:CDS |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 6.4:-6209639 | MS.gene65528:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | 6.4:+6207897 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 6.4:-6209492 | MS.gene65528:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 6.4:+6209546 | None:intergenic |
| CGCTTTAAAATATATTCATT+TGG | 0.317378 | 6.4:+6208182 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 6.4:+6209492 | None:intergenic |
| TGTCAACTTTATGAATTTAT+GGG | 0.343627 | 6.4:-6208260 | MS.gene65528:CDS |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 6.4:+6209493 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | 6.4:-6207991 | MS.gene65528:CDS |
| AAGGTCTTCATATTATAAAT+AGG | 0.380706 | 6.4:+6208677 | None:intergenic |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | 6.4:+6207953 | None:intergenic |
| GGAAGATTGGCACCAAATAA+TGG | 0.388470 | 6.4:-6208765 | MS.gene65528:CDS |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 6.4:-6208234 | MS.gene65528:CDS |
| ATAAAGTTGACAACCACATT+TGG | 0.431711 | 6.4:+6208271 | None:intergenic |
| AATGTTTAGCAATGAAGGTT+CGG | 0.437737 | 6.4:-6209386 | MS.gene65528:CDS |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | 6.4:-6209391 | MS.gene65528:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 6.4:-6209602 | MS.gene65528:CDS |
| CTCTAATTTCATACAAACCT+TGG | 0.445596 | 6.4:+6208711 | None:intergenic |
| CTTTCTCTGATAGAGATTGT+TGG | 0.446604 | 6.4:-6209363 | MS.gene65528:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 6.4:-6209694 | MS.gene65528:CDS |
| CAATATTCAAGATCCGATAA+TGG | 0.465564 | 6.4:-6207874 | MS.gene65528:CDS |
| ATTTGGCAGCCCTTGTATCA+AGG | 0.469613 | 6.4:+6208288 | None:intergenic |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 6.4:+6209850 | None:intergenic |
| TGGAAGAATCAAAAGCGGTC+TGG | 0.495399 | 6.4:-6207805 | MS.gene65528:CDS |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | 6.4:-6209421 | MS.gene65528:CDS |
| CCGATAATGGCACAAACTAA+AGG | 0.499113 | 6.4:-6207861 | MS.gene65528:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 6.4:+6209547 | None:intergenic |
| AGAAGAACATGTCAAATATG+TGG | 0.508664 | 6.4:-6207753 | MS.gene65528:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 6.4:+6208054 | None:intergenic |
| GCTAATATTGCCATTATATG+TGG | 0.517269 | 6.4:-6208146 | MS.gene65528:CDS |
| ACAAACTAAAGGAAGACAAA+AGG | 0.527619 | 6.4:-6207850 | MS.gene65528:CDS |
| TGTCAAATATGTGGAGAAGA+AGG | 0.528520 | 6.4:-6207744 | MS.gene65528:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 6.4:+6209671 | None:intergenic |
| TTTATGTGGACCTTGATACA+AGG | 0.535609 | 6.4:-6208298 | MS.gene65528:CDS |
| AGAGTCATATACTGTTTATG+TGG | 0.549358 | 6.4:-6208312 | MS.gene65528:CDS |
| AAAGGTTAGCCACTTCATCA+AGG | 0.553222 | 6.4:-6208396 | MS.gene65528:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 6.4:-6210028 | MS.gene65528:intron |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | 6.4:-6209434 | MS.gene65528:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 6.4:+6209494 | None:intergenic |
| TGTATGAAATTAGAGAGTCA+TGG | 0.568726 | 6.4:-6208703 | MS.gene65528:CDS |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | 6.4:-6209433 | MS.gene65528:CDS |
| GTTTCAGGACGAGCTTGCAA+AGG | 0.593760 | 6.4:-6208414 | MS.gene65528:CDS |
| AATGCTCGAGTTTCTCAACC+TGG | 0.593762 | 6.4:-6207825 | MS.gene65528:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 6.4:-6209521 | MS.gene65528:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 6.4:+6209808 | None:intergenic |
| AGTAAAGTTTGACAAAGCAG+TGG | 0.629642 | 6.4:-6208561 | MS.gene65528:CDS |
| GATACAAGGGCTGCCAAATG+TGG | 0.650490 | 6.4:-6208284 | MS.gene65528:CDS |
| TTATGTGGACCTTGATACAA+GGG | 0.662546 | 6.4:-6208297 | MS.gene65528:CDS |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 6.4:+6209851 | None:intergenic |
| CAACCTGGAAGAATCAAAAG+CGG | 0.677260 | 6.4:-6207810 | MS.gene65528:CDS |
| TGAAGAAGATAGTCATAACA+TGG | 0.681121 | 6.4:-6210040 | MS.gene65528:CDS |
| TACTACGAAATCTCGCAGTG+TGG | 0.701060 | 6.4:+6208580 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.748276 | 6.4:-6210037 | MS.gene65528:CDS |
| CTGGGATGAATACAACACAG+AGG | 0.795926 | 6.4:-6208649 | MS.gene65528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr6.4:6208533-6208552 | MS.gene65528:CDS | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr6.4:6208534-6208553 | MS.gene65528:CDS | 10.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr6.4:6208996-6209015 | MS.gene65528:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr6.4:6208996-6209015 | None:intergenic | 15.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr6.4:6208581-6208600 | None:intergenic | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr6.4:6209072-6209091 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr6.4:6208786-6208805 | MS.gene65528:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr6.4:6208498-6208517 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr6.4:6208499-6208518 | None:intergenic | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr6.4:6209486-6209505 | MS.gene65528:CDS | 20.0% |
| !! | TTCATTAATACCACATATAA+TGG | + | chr6.4:6209613-6209632 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr6.4:6209485-6209504 | MS.gene65528:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr6.4:6209010-6209029 | MS.gene65528:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr6.4:6209567-6209586 | None:intergenic | 20.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr6.4:6208203-6208222 | None:intergenic | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr6.4:6208202-6208221 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr6.4:6209278-6209297 | MS.gene65528:intron | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr6.4:6208256-6208275 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr6.4:6208255-6208274 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr6.4:6208176-6208195 | MS.gene65528:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr6.4:6207941-6207960 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr6.4:6208781-6208800 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr6.4:6209317-6209336 | MS.gene65528:CDS | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr6.4:6207989-6208008 | MS.gene65528:CDS | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr6.4:6208960-6208979 | MS.gene65528:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr6.4:6208912-6208931 | None:intergenic | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr6.4:6207931-6207950 | MS.gene65528:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr6.4:6207995-6208014 | MS.gene65528:CDS | 25.0% |
| !!! | ATGAATATATTTTAAAGCGC+TGG | - | chr6.4:6209568-6209587 | MS.gene65528:CDS | 25.0% |
| AACATCAAGAACTGATTGTA+AGG | - | chr6.4:6208144-6208163 | MS.gene65528:CDS | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr6.4:6209369-6209388 | MS.gene65528:CDS | 30.0% | |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr6.4:6208360-6208379 | MS.gene65528:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | - | chr6.4:6209896-6209915 | MS.gene65528:intron | 30.0% | |
| AGAAGAACATGTCAAATATG+TGG | - | chr6.4:6209993-6210012 | MS.gene65528:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr6.4:6209434-6209453 | MS.gene65528:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr6.4:6209370-6209389 | MS.gene65528:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr6.4:6209478-6209497 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr6.4:6208052-6208071 | MS.gene65528:CDS | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr6.4:6209512-6209531 | MS.gene65528:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr6.4:6208225-6208244 | MS.gene65528:CDS | 30.0% | |
| CAATATTCAAGATCCGATAA+TGG | - | chr6.4:6209872-6209891 | MS.gene65528:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr6.4:6208257-6208276 | None:intergenic | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | + | chr6.4:6209038-6209057 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr6.4:6208107-6208126 | MS.gene65528:CDS | 30.0% | |
| GCTAATATTGCCATTATATG+TGG | - | chr6.4:6209600-6209619 | MS.gene65528:CDS | 30.0% | |
| GCTTGAAAAGATCATCAAAA+AGG | - | chr6.4:6209755-6209774 | MS.gene65528:CDS | 30.0% | |
| TGAAGAAGATAGTCATAACA+TGG | - | chr6.4:6207706-6207725 | MS.gene65528:CDS | 30.0% | |
| TGATGATTCAATCCAGTAAA+TGG | + | chr6.4:6208655-6208674 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr6.4:6209043-6209062 | MS.gene65528:intron | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | + | chr6.4:6208078-6208097 | None:intergenic | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr6.4:6209716-6209735 | None:intergenic | 30.0% |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr6.4:6208673-6208692 | MS.gene65528:CDS | 30.0% |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr6.4:6208254-6208273 | MS.gene65528:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr6.4:6208271-6208290 | MS.gene65528:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr6.4:6208270-6208289 | MS.gene65528:CDS | 30.0% |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | + | chr6.4:6209796-6209815 | None:intergenic | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr6.4:6208731-6208750 | MS.gene65528:CDS | 30.0% |
| !! | TCTTCTTCAGCATTTGATTT+TGG | + | chr6.4:6207695-6207714 | None:intergenic | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr6.4:6208968-6208987 | MS.gene65528:intron | 30.0% |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr6.4:6209078-6209097 | MS.gene65528:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr6.4:6208571-6208590 | MS.gene65528:CDS | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr6.4:6209079-6209098 | MS.gene65528:intron | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr6.4:6208545-6208564 | MS.gene65528:CDS | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr6.4:6208426-6208445 | None:intergenic | 30.0% |
| AGAAGATAGTCATAACATGG+AGG | - | chr6.4:6207709-6207728 | MS.gene65528:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr6.4:6208417-6208436 | MS.gene65528:CDS | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr6.4:6209185-6209204 | MS.gene65528:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr6.4:6208312-6208331 | MS.gene65528:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr6.4:6208686-6208705 | None:intergenic | 35.0% | |
| CATAAACGATGTCGAGTATT+AGG | + | chr6.4:6208841-6208860 | None:intergenic | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr6.4:6208424-6208443 | MS.gene65528:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr6.4:6208383-6208402 | MS.gene65528:CDS | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr6.4:6209018-6209037 | MS.gene65528:intron | 35.0% | |
| GCTACAATGTTTAGCAATGA+AGG | - | chr6.4:6208355-6208374 | MS.gene65528:CDS | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr6.4:6208890-6208909 | None:intergenic | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr6.4:6208313-6208332 | MS.gene65528:CDS | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr6.4:6209091-6209110 | None:intergenic | 35.0% | |
| TGTCAAATATGTGGAGAAGA+AGG | - | chr6.4:6210002-6210021 | MS.gene65528:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr6.4:6209449-6209468 | MS.gene65528:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr6.4:6209448-6209467 | MS.gene65528:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr6.4:6208347-6208366 | None:intergenic | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | - | chr6.4:6208716-6208735 | MS.gene65528:CDS | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr6.4:6209695-6209714 | None:intergenic | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr6.4:6208738-6208757 | MS.gene65528:CDS | 35.0% |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | - | chr6.4:6208699-6208718 | MS.gene65528:CDS | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | + | chr6.4:6209888-6209907 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | + | chr6.4:6209753-6209772 | None:intergenic | 35.0% |
| !!! | TATTTTAAAGCGCTGGACAA+AGG | - | chr6.4:6209575-6209594 | MS.gene65528:CDS | 35.0% |
| AACTCAGCTTCTTCAGTTGT+TGG | + | chr6.4:6209852-6209871 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr6.4:6208185-6208204 | MS.gene65528:CDS | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | + | chr6.4:6208646-6208665 | None:intergenic | 40.0% | |
| CAACCTGGAAGAATCAAAAG+CGG | - | chr6.4:6209936-6209955 | MS.gene65528:intron | 40.0% | |
| CATCAAAAAGGCCAGAATGA+TGG | - | chr6.4:6209767-6209786 | MS.gene65528:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr6.4:6208845-6208864 | MS.gene65528:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr6.4:6208745-6208764 | MS.gene65528:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr6.4:6207898-6207917 | None:intergenic | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr6.4:6208981-6209000 | MS.gene65528:intron | 40.0% | |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr6.4:6208276-6208295 | MS.gene65528:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | - | chr6.4:6207718-6207737 | MS.gene65528:CDS | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr6.4:6208744-6208763 | MS.gene65528:CDS | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr6.4:6207899-6207918 | None:intergenic | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr6.4:6209350-6209369 | MS.gene65528:CDS | 40.0% |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr6.4:6208274-6208293 | MS.gene65528:CDS | 40.0% |
| ! | CCGATAATGGCACAAACTAA+AGG | - | chr6.4:6209885-6209904 | MS.gene65528:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr6.4:6209362-6209381 | None:intergenic | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr6.4:6208275-6208294 | MS.gene65528:CDS | 40.0% |
| AATGCTCGAGTTTCTCAACC+TGG | - | chr6.4:6209921-6209940 | MS.gene65528:intron | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr6.4:6209461-6209480 | None:intergenic | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr6.4:6209097-6209116 | MS.gene65528:intron | 45.0% | |
| GATCAAGATAAGGCGATGTG+CGG | - | chr6.4:6208796-6208815 | MS.gene65528:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr6.4:6208810-6208829 | MS.gene65528:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr6.4:6209169-6209188 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | + | chr6.4:6209781-6209800 | None:intergenic | 45.0% | |
| TGGAAGAATCAAAAGCGGTC+TGG | - | chr6.4:6209941-6209960 | MS.gene65528:intron | 45.0% | |
| ! | ATGCCATTTGCGCCATTTAC+TGG | - | chr6.4:6208640-6208659 | MS.gene65528:CDS | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr6.4:6208343-6208362 | None:intergenic | 45.0% |
| !! | AGACCGCTTTTGATTCTTCC+AGG | + | chr6.4:6209942-6209961 | None:intergenic | 45.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr6.4:6208282-6208301 | None:intergenic | 45.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr6.4:6208748-6208767 | MS.gene65528:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr6.4:6209462-6209481 | MS.gene65528:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr6.4:6209332-6209351 | MS.gene65528:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr6.4:6208551-6208570 | MS.gene65528:CDS | 50.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr6.4:6208325-6208344 | MS.gene65528:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr6.4:6208555-6208574 | MS.gene65528:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 6207683 | 6210085 | 6207683 | ID=MS.gene65528 |
| chr6.4 | mRNA | 6207683 | 6210085 | 6207683 | ID=MS.gene65528.t1;Parent=MS.gene65528 |
| chr6.4 | exon | 6210029 | 6210085 | 6210029 | ID=MS.gene65528.t1.exon1;Parent=MS.gene65528.t1 |
| chr6.4 | CDS | 6210029 | 6210085 | 6210029 | ID=cds.MS.gene65528.t1;Parent=MS.gene65528.t1 |
| chr6.4 | exon | 6209296 | 6209902 | 6209296 | ID=MS.gene65528.t1.exon2;Parent=MS.gene65528.t1 |
| chr6.4 | CDS | 6209296 | 6209902 | 6209296 | ID=cds.MS.gene65528.t1;Parent=MS.gene65528.t1 |
| chr6.4 | exon | 6207683 | 6208794 | 6207683 | ID=MS.gene65528.t1.exon3;Parent=MS.gene65528.t1 |
| chr6.4 | CDS | 6207683 | 6208794 | 6207683 | ID=cds.MS.gene65528.t1;Parent=MS.gene65528.t1 |
| Gene Sequence |
| Protein sequence |
