Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65573.t1 | XP_013445993.1 | 90 | 419 | 31 | 2 | 1 | 419 | 1 | 408 | 2.90E-215 | 757.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65573.t1 | Q0WNR2 | 34.6 | 437 | 241 | 11 | 3 | 416 | 10 | 424 | 9.6e-58 | 225.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65573.t1 | A0A072U2K1 | 90.0 | 419 | 31 | 2 | 1 | 419 | 1 | 408 | 2.1e-215 | 757.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene65573.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65573.t1 | MTR_8g064700 | 89.976 | 419 | 31 | 2 | 1 | 419 | 1 | 408 | 0.0 | 783 |
MS.gene65573.t1 | MTR_1g112680 | 30.000 | 500 | 257 | 14 | 3 | 416 | 9 | 501 | 3.32e-66 | 220 |
MS.gene65573.t1 | MTR_2g038040 | 35.260 | 173 | 108 | 2 | 244 | 415 | 51 | 220 | 6.15e-27 | 108 |
MS.gene65573.t1 | MTR_4g091910 | 30.252 | 238 | 110 | 6 | 180 | 416 | 12 | 194 | 5.24e-21 | 90.9 |
MS.gene65573.t1 | MTR_3g498695 | 31.308 | 214 | 120 | 5 | 218 | 419 | 270 | 468 | 7.29e-20 | 92.0 |
MS.gene65573.t1 | MTR_3g498695 | 31.163 | 215 | 120 | 5 | 218 | 419 | 270 | 469 | 1.12e-19 | 91.3 |
MS.gene65573.t1 | MTR_3g030700 | 34.091 | 176 | 98 | 3 | 244 | 415 | 195 | 356 | 1.69e-19 | 89.7 |
MS.gene65573.t1 | MTR_4g091990 | 31.980 | 197 | 92 | 5 | 216 | 404 | 8 | 170 | 1.74e-18 | 83.6 |
MS.gene65573.t1 | MTR_2g084280 | 33.742 | 163 | 89 | 4 | 237 | 398 | 125 | 269 | 3.18e-18 | 85.1 |
MS.gene65573.t1 | MTR_2g081040 | 30.939 | 181 | 102 | 4 | 244 | 415 | 176 | 342 | 6.08e-18 | 85.1 |
MS.gene65573.t1 | MTR_4g057270 | 30.108 | 186 | 111 | 5 | 236 | 419 | 140 | 308 | 1.35e-17 | 84.0 |
MS.gene65573.t1 | MTR_3g104100 | 30.387 | 181 | 103 | 4 | 244 | 415 | 194 | 360 | 1.78e-17 | 84.0 |
MS.gene65573.t1 | MTR_7g083900 | 31.472 | 197 | 93 | 6 | 244 | 419 | 285 | 460 | 3.25e-16 | 80.9 |
MS.gene65573.t1 | MTR_7g083900 | 31.633 | 196 | 93 | 6 | 244 | 419 | 285 | 459 | 3.52e-16 | 80.5 |
MS.gene65573.t1 | MTR_4g097950 | 31.429 | 175 | 101 | 5 | 225 | 393 | 49 | 210 | 1.81e-15 | 76.3 |
MS.gene65573.t1 | MTR_4g092700 | 27.843 | 255 | 160 | 8 | 159 | 409 | 73 | 307 | 1.12e-14 | 75.1 |
MS.gene65573.t1 | MTR_2g010450 | 29.448 | 163 | 101 | 4 | 247 | 409 | 179 | 327 | 2.55e-13 | 71.2 |
MS.gene65573.t1 | MTR_0250s0040 | 26.220 | 164 | 104 | 3 | 247 | 409 | 90 | 237 | 4.54e-13 | 69.3 |
MS.gene65573.t1 | MTR_4g067010 | 26.347 | 167 | 97 | 3 | 247 | 409 | 149 | 293 | 1.19e-12 | 68.9 |
MS.gene65573.t1 | MTR_5g014600 | 26.590 | 173 | 105 | 4 | 247 | 409 | 151 | 311 | 1.71e-12 | 68.6 |
MS.gene65573.t1 | MTR_5g030430 | 29.341 | 167 | 108 | 4 | 249 | 414 | 497 | 654 | 2.13e-12 | 69.3 |
MS.gene65573.t1 | MTR_0246s0020 | 26.627 | 169 | 112 | 5 | 247 | 415 | 200 | 356 | 3.19e-12 | 68.2 |
MS.gene65573.t1 | MTR_0246s0020 | 25.767 | 163 | 110 | 4 | 247 | 409 | 200 | 351 | 6.43e-12 | 67.0 |
MS.gene65573.t1 | MTR_4g009540 | 22.713 | 317 | 204 | 10 | 96 | 409 | 29 | 307 | 7.29e-12 | 66.2 |
MS.gene65573.t1 | MTR_4g009540 | 22.713 | 317 | 204 | 10 | 96 | 409 | 29 | 307 | 1.20e-11 | 65.9 |
MS.gene65573.t1 | MTR_8g067280 | 28.395 | 162 | 105 | 4 | 250 | 410 | 467 | 618 | 1.44e-11 | 66.6 |
MS.gene65573.t1 | MTR_0011s0260 | 26.380 | 163 | 105 | 3 | 247 | 409 | 185 | 332 | 3.33e-11 | 64.7 |
MS.gene65573.t1 | MTR_8g024770 | 22.941 | 340 | 192 | 12 | 108 | 413 | 129 | 432 | 8.09e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65573.t1 | AT1G10610 | 33.410 | 437 | 246 | 10 | 3 | 416 | 10 | 424 | 5.18e-69 | 225 |
MS.gene65573.t1 | AT1G10610 | 31.873 | 411 | 235 | 10 | 29 | 416 | 6 | 394 | 5.21e-54 | 185 |
MS.gene65573.t1 | AT1G10610 | 29.738 | 343 | 202 | 7 | 87 | 411 | 1 | 322 | 2.22e-35 | 134 |
MS.gene65573.t1 | AT2G16910 | 42.763 | 152 | 73 | 5 | 3 | 147 | 8 | 152 | 6.49e-35 | 136 |
MS.gene65573.t1 | AT2G16910 | 38.916 | 203 | 116 | 4 | 216 | 410 | 284 | 486 | 1.04e-28 | 118 |
MS.gene65573.t1 | AT5G57150 | 33.721 | 172 | 104 | 4 | 244 | 413 | 54 | 217 | 1.85e-27 | 109 |
MS.gene65573.t1 | AT5G57150 | 34.706 | 170 | 101 | 4 | 244 | 411 | 53 | 214 | 3.33e-27 | 109 |
MS.gene65573.t1 | AT5G57150 | 33.333 | 174 | 106 | 4 | 244 | 415 | 54 | 219 | 3.56e-27 | 108 |
MS.gene65573.t1 | AT5G57150 | 34.132 | 167 | 104 | 3 | 244 | 410 | 53 | 213 | 5.46e-27 | 107 |
MS.gene65573.t1 | AT5G57150 | 34.132 | 167 | 104 | 3 | 244 | 410 | 54 | 214 | 1.02e-26 | 108 |
MS.gene65573.t1 | AT4G29930 | 31.667 | 180 | 107 | 5 | 244 | 412 | 53 | 227 | 5.89e-22 | 95.1 |
MS.gene65573.t1 | AT4G29930 | 31.667 | 180 | 107 | 5 | 244 | 412 | 53 | 227 | 5.89e-22 | 95.1 |
MS.gene65573.t1 | AT4G29930 | 31.844 | 179 | 106 | 5 | 244 | 411 | 53 | 226 | 6.41e-22 | 94.7 |
MS.gene65573.t1 | AT4G29930 | 29.167 | 168 | 99 | 3 | 244 | 411 | 53 | 200 | 6.54e-21 | 91.3 |
MS.gene65573.t1 | AT4G29930 | 28.402 | 169 | 98 | 3 | 244 | 412 | 53 | 198 | 1.41e-20 | 90.5 |
MS.gene65573.t1 | AT4G29930 | 28.571 | 168 | 97 | 3 | 244 | 411 | 53 | 197 | 1.49e-20 | 90.1 |
MS.gene65573.t1 | AT2G28160 | 31.250 | 160 | 96 | 3 | 240 | 398 | 126 | 272 | 3.04e-18 | 85.5 |
MS.gene65573.t1 | AT2G28160 | 31.250 | 160 | 96 | 3 | 240 | 398 | 126 | 272 | 3.22e-18 | 85.5 |
MS.gene65573.t1 | AT1G12860 | 33.140 | 172 | 106 | 3 | 244 | 415 | 266 | 428 | 8.78e-18 | 85.5 |
MS.gene65573.t1 | AT1G12860 | 33.533 | 167 | 102 | 3 | 244 | 410 | 266 | 423 | 1.47e-17 | 84.7 |
MS.gene65573.t1 | AT4G29930 | 46.575 | 73 | 35 | 1 | 244 | 316 | 53 | 121 | 6.08e-16 | 76.3 |
MS.gene65573.t1 | AT3G26744 | 29.379 | 177 | 100 | 2 | 244 | 410 | 306 | 467 | 2.49e-15 | 78.2 |
MS.gene65573.t1 | AT3G26744 | 29.379 | 177 | 100 | 2 | 244 | 410 | 306 | 467 | 2.52e-15 | 78.2 |
MS.gene65573.t1 | AT3G26744 | 29.379 | 177 | 100 | 2 | 244 | 410 | 306 | 467 | 2.52e-15 | 78.2 |
MS.gene65573.t1 | AT3G26744 | 29.379 | 177 | 100 | 2 | 244 | 410 | 306 | 467 | 2.52e-15 | 78.2 |
MS.gene65573.t1 | AT4G21330 | 28.272 | 191 | 110 | 5 | 230 | 414 | 16 | 185 | 4.83e-15 | 73.9 |
MS.gene65573.t1 | AT5G46760 | 29.146 | 199 | 111 | 6 | 230 | 414 | 387 | 569 | 2.49e-13 | 72.4 |
MS.gene65573.t1 | AT4G37850 | 30.286 | 175 | 100 | 6 | 246 | 416 | 153 | 309 | 8.70e-13 | 69.3 |
MS.gene65573.t1 | AT4G37850 | 30.286 | 175 | 100 | 6 | 246 | 416 | 153 | 309 | 8.70e-13 | 69.3 |
MS.gene65573.t1 | AT4G17880 | 32.000 | 175 | 82 | 9 | 249 | 414 | 420 | 566 | 4.77e-12 | 68.2 |
MS.gene65573.t1 | AT1G63650 | 25.714 | 175 | 110 | 4 | 237 | 401 | 400 | 564 | 9.19e-12 | 67.4 |
MS.gene65573.t1 | AT1G63650 | 25.714 | 175 | 110 | 4 | 237 | 401 | 400 | 564 | 9.19e-12 | 67.4 |
MS.gene65573.t1 | AT1G63650 | 25.714 | 175 | 110 | 4 | 237 | 401 | 400 | 564 | 9.19e-12 | 67.4 |
MS.gene65573.t1 | AT1G32640 | 31.737 | 167 | 94 | 7 | 249 | 414 | 456 | 603 | 1.10e-11 | 67.0 |
MS.gene65573.t1 | AT5G41315 | 24.737 | 190 | 109 | 3 | 233 | 401 | 434 | 610 | 2.61e-11 | 65.9 |
MS.gene65573.t1 | AT5G41315 | 24.737 | 190 | 109 | 3 | 233 | 401 | 429 | 605 | 2.67e-11 | 65.9 |
MS.gene65573.t1 | AT5G41315 | 24.737 | 190 | 109 | 3 | 233 | 401 | 437 | 613 | 2.74e-11 | 65.9 |
Find 77 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATATACCTTGGTTATATT+AGG | 0.201515 | 8.2:-37038456 | None:intergenic |
TATGTTGTTGTTTGGAAATA+TGG | 0.204753 | 8.2:+37037163 | MS.gene65573:CDS |
TCAACAAGACCGCCAATAAT+AGG | 0.227144 | 8.2:-37037860 | None:intergenic |
TTCACGGTATTTATATCTTC+TGG | 0.230774 | 8.2:-37038051 | None:intergenic |
CAAAGTTCTGAACATTATTA+TGG | 0.236450 | 8.2:+37039204 | MS.gene65573:CDS |
ATCGGTGAGAGGTAGGTTTC+TGG | 0.265091 | 8.2:-37038869 | None:intergenic |
GATATACCTTGGTTATATTA+GGG | 0.312920 | 8.2:-37038455 | None:intergenic |
GAGTAAAGAGACATTGTAAA+AGG | 0.338943 | 8.2:-37037563 | None:intergenic |
CTTGGGATTATGTTGTTGTT+TGG | 0.348246 | 8.2:+37037155 | MS.gene65573:CDS |
ATGGAAGCAATAGATTCATT+TGG | 0.358052 | 8.2:+37039142 | MS.gene65573:CDS |
TCGAGTGTCGATTGTGGAAA+TGG | 0.359972 | 8.2:+37038306 | MS.gene65573:CDS |
TCACGGTATTTATATCTTCT+GGG | 0.373046 | 8.2:-37038050 | None:intergenic |
AATACTCTCTGATTTACTTC+GGG | 0.390178 | 8.2:-37040009 | None:intergenic |
TTACAATGTCTCTTTACTCT+AGG | 0.394848 | 8.2:+37037567 | MS.gene65573:CDS |
CAACAAGACCGCCAATAATA+GGG | 0.398653 | 8.2:-37037859 | None:intergenic |
TGTAGGTTTATTGAGTGGTT+AGG | 0.409602 | 8.2:+37037398 | MS.gene65573:intron |
GCAAACATAACAACATTTGA+TGG | 0.413292 | 8.2:+37039181 | MS.gene65573:CDS |
ACCTCATGGATAAGCCATCT+TGG | 0.422456 | 8.2:-37037717 | None:intergenic |
ATCATTTGGCTTCCATTTGT+AGG | 0.425186 | 8.2:+37037483 | MS.gene65573:CDS |
GGATGCGATTGAATATATAA+TGG | 0.425745 | 8.2:+37038726 | MS.gene65573:CDS |
AGCAAGAGCCTCACAAGTCT+TGG | 0.436170 | 8.2:-37037534 | None:intergenic |
ATCTTATCACAGAGAGGAAT+AGG | 0.438830 | 8.2:+37038388 | MS.gene65573:CDS |
AATTTGTGAAGAATATCATT+TGG | 0.442609 | 8.2:+37037469 | MS.gene65573:CDS |
CTTTGTTGAGAGGAAAGCTT+GGG | 0.443033 | 8.2:+37037138 | MS.gene65573:CDS |
TCTGAACATTATTATGGTTG+AGG | 0.445865 | 8.2:+37039210 | MS.gene65573:CDS |
AATGATAAGTGCTCAGTTGA+AGG | 0.446352 | 8.2:-37038186 | None:intergenic |
GGCGTAGCTATGTGCCGATA+TGG | 0.456399 | 8.2:-37038115 | None:intergenic |
TGGTTAGGTTGTTGCTGTTG+TGG | 0.457561 | 8.2:+37037413 | MS.gene65573:CDS |
TCATTTGGCTTCCATTTGTA+GGG | 0.464580 | 8.2:+37037484 | MS.gene65573:CDS |
AAATACTCTCTGATTTACTT+CGG | 0.472655 | 8.2:-37040010 | None:intergenic |
TTTGTCCCAGGCAACTGTGC+AGG | 0.479947 | 8.2:+37039979 | MS.gene65573:intron |
TATAAAGCAAGAAGCCATAT+CGG | 0.481509 | 8.2:+37038101 | MS.gene65573:CDS |
ATGTGCTGATATGAACTTCA+CGG | 0.499222 | 8.2:-37038067 | None:intergenic |
CCTTTGTTGAGAGGAAAGCT+TGG | 0.499952 | 8.2:+37037137 | MS.gene65573:CDS |
TGAGAAGGTGAAGTTGAAAG+AGG | 0.513233 | 8.2:+37037445 | MS.gene65573:CDS |
AGAATTTCAAGAAGAGGTCA+AGG | 0.513955 | 8.2:+37038768 | MS.gene65573:CDS |
CAAGAGGAATCAAGCATCCA+TGG | 0.518928 | 8.2:-37038218 | None:intergenic |
TTCTTAGACCCTTTGTTGAG+AGG | 0.521603 | 8.2:+37037128 | MS.gene65573:CDS |
TTAGGTTGTTGCTGTTGTGG+TGG | 0.522064 | 8.2:+37037416 | MS.gene65573:CDS |
CTCCATCCGTGTCTTTCTAG+TGG | 0.522923 | 8.2:-37038914 | None:intergenic |
TTATCATTTGATTCAAACCA+TGG | 0.523144 | 8.2:+37038201 | MS.gene65573:CDS |
CAAGCTTTCCTCTCAACAAA+GGG | 0.525491 | 8.2:-37037136 | None:intergenic |
ATAAAATTTCAGCGAAACAT+CGG | 0.527179 | 8.2:+37038277 | MS.gene65573:CDS |
GGTCAAGGCTTTAGAAGTTG+AGG | 0.528592 | 8.2:+37038783 | MS.gene65573:CDS |
AAATAAAGAAAATATTGTAA+AGG | 0.541349 | 8.2:+37038335 | MS.gene65573:CDS |
CTTTAGAAGTTGAGGACTGT+GGG | 0.546640 | 8.2:+37038791 | MS.gene65573:CDS |
AGAGAAAGAATTTCAAGAAG+AGG | 0.551008 | 8.2:+37038762 | MS.gene65573:CDS |
CCAAGCTTTCCTCTCAACAA+AGG | 0.551769 | 8.2:-37037137 | None:intergenic |
TCTTGTGTAGGTTTATTGAG+TGG | 0.557166 | 8.2:+37037393 | MS.gene65573:intron |
TGTAGTTCGAGTGTCGATTG+TGG | 0.557198 | 8.2:+37038300 | MS.gene65573:CDS |
GATTAAGATCGGTGAGAGGT+AGG | 0.559917 | 8.2:-37038876 | None:intergenic |
GCATGATACACTTTCTCTTG+AGG | 0.560146 | 8.2:-37038360 | None:intergenic |
AGACGAACTTTGATTAAGAT+CGG | 0.560787 | 8.2:-37038887 | None:intergenic |
GTGATATTGCTACCTCTGCA+TGG | 0.560850 | 8.2:-37037689 | None:intergenic |
GCTAAAATTGAAGTTCATGT+TGG | 0.562915 | 8.2:-37038136 | None:intergenic |
CAATATCACAGCAACCAAGA+TGG | 0.602156 | 8.2:+37037703 | MS.gene65573:CDS |
GGTTGATTCAAATATTCAAG+AGG | 0.603504 | 8.2:-37038234 | None:intergenic |
GCTTTAGAAGTTGAGGACTG+TGG | 0.603990 | 8.2:+37038790 | MS.gene65573:CDS |
AATATGGAAATGATCCAACT+AGG | 0.624297 | 8.2:+37037179 | MS.gene65573:CDS |
AATATATAATGGAATTGCAG+AGG | 0.626528 | 8.2:+37038737 | MS.gene65573:CDS |
AGGAGGAACAGAATAAAACA+AGG | 0.627576 | 8.2:+37038408 | MS.gene65573:CDS |
AAAGACAAAGAACTTGCAGA+AGG | 0.635182 | 8.2:+37038844 | MS.gene65573:CDS |
GATCTACAGTATCCATGCAG+AGG | 0.649229 | 8.2:+37037677 | MS.gene65573:intron |
TTATCACAGAGAGGAATAGG+AGG | 0.649501 | 8.2:+37038391 | MS.gene65573:CDS |
GGACAGAGTAGCGATTCTTG+AGG | 0.651020 | 8.2:+37038705 | MS.gene65573:CDS |
TTCCACTAGAAAGACACGGA+TGG | 0.652546 | 8.2:+37038912 | MS.gene65573:CDS |
AGTTAAAACCAAGACTTGTG+AGG | 0.657274 | 8.2:+37037526 | MS.gene65573:CDS |
ACCAAGATGGCTTATCCATG+AGG | 0.658504 | 8.2:+37037716 | MS.gene65573:CDS |
CTGATTCCACTAGAAAGACA+CGG | 0.659773 | 8.2:+37038908 | MS.gene65573:CDS |
TTTAGTCCCTAATATAACCA+AGG | 0.660020 | 8.2:+37038449 | MS.gene65573:CDS |
CACTAGAAAGACACGGATGG+AGG | 0.661720 | 8.2:+37038915 | MS.gene65573:CDS |
CTTTGATTAAGATCGGTGAG+AGG | 0.675164 | 8.2:-37038880 | None:intergenic |
TTGTGCTGTGAGCAGAAGCA+AGG | 0.681055 | 8.2:+37039103 | MS.gene65573:CDS |
TTGTGGTGGAAACATTGAGA+AGG | 0.683212 | 8.2:+37037430 | MS.gene65573:CDS |
GGAGGAACAGAATAAAACAA+GGG | 0.689769 | 8.2:+37038409 | MS.gene65573:CDS |
GTAGAAGTGAATCACGTCGG+CGG | 0.690977 | 8.2:+37039061 | MS.gene65573:CDS |
CAAGTAGAAGTGAATCACGT+CGG | 0.698680 | 8.2:+37039058 | MS.gene65573:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAGAAAATATTGTAA+AGG | + | chr8.2:37038335-37038354 | MS.gene65573:CDS | 10.0% |
!!! | ATACAAATTTTAATACTTAT+TGG | + | chr8.2:37037907-37037926 | MS.gene65573:intron | 10.0% |
!! | TTCTATATTTAATCATTGAA+AGG | + | chr8.2:37037633-37037652 | MS.gene65573:intron | 15.0% |
!!! | TTTTTTTATTAAGATAGTGA+GGG | - | chr8.2:37039630-37039649 | None:intergenic | 15.0% |
!!! | TTTTTTTTATTAAGATAGTG+AGG | - | chr8.2:37039631-37039650 | None:intergenic | 15.0% |
!! | AAAATTTACAATCATTCTTC+TGG | - | chr8.2:37037999-37038018 | None:intergenic | 20.0% |
!! | AAATTTACAATCATTCTTCT+GGG | - | chr8.2:37037998-37038017 | None:intergenic | 20.0% |
!! | AATTTGTGAAGAATATCATT+TGG | + | chr8.2:37037469-37037488 | MS.gene65573:CDS | 20.0% |
!! | ACAAAAATTAATTTACCTCA+TGG | - | chr8.2:37037734-37037753 | None:intergenic | 20.0% |
!! | ATGCAAATGAATAACAAAAT+GGG | - | chr8.2:37037214-37037233 | None:intergenic | 20.0% |
!! | ATTGAGTATTTAAATTAGAC+AGG | + | chr8.2:37039369-37039388 | MS.gene65573:intron | 20.0% |
!! | TAAACAATTTAGATATACCT+TGG | - | chr8.2:37038469-37038488 | None:intergenic | 20.0% |
!! | TATTTATGCACTTAACTAAT+AGG | - | chr8.2:37039249-37039268 | None:intergenic | 20.0% |
!! | TCTAATTTAAATACTCAATC+TGG | - | chr8.2:37039368-37039387 | None:intergenic | 20.0% |
!!! | AATTTTATTGCATCTTTTCT+TGG | + | chr8.2:37039000-37039019 | MS.gene65573:intron | 20.0% |
!!! | TAGTTTTTCAAAATTGTCTA+CGG | - | chr8.2:37039822-37039841 | None:intergenic | 20.0% |
!!! | TATAACTTTTACCAAAATCA+TGG | - | chr8.2:37038584-37038603 | None:intergenic | 20.0% |
!!! | TATATTCGATTTGAAGTATT+CGG | - | chr8.2:37039726-37039745 | None:intergenic | 20.0% |
!!! | TTTAACTTGATGATGAAAAA+GGG | - | chr8.2:37037513-37037532 | None:intergenic | 20.0% |
!!! | TTTTAACTTGATGATGAAAA+AGG | - | chr8.2:37037514-37037533 | None:intergenic | 20.0% |
! | AAAACTAGAGATTTCATTCA+TGG | + | chr8.2:37039835-37039854 | MS.gene65573:intron | 25.0% |
! | AATGAGATTATTGTAGATAG+TGG | - | chr8.2:37039757-37039776 | None:intergenic | 25.0% |
! | AGATATACCTTGGTTATATT+AGG | - | chr8.2:37038459-37038478 | None:intergenic | 25.0% |
! | ATAAAATTTCAGCGAAACAT+CGG | + | chr8.2:37038277-37038296 | MS.gene65573:CDS | 25.0% |
! | ATCATTGAAAGGAAATTCTA+AGG | + | chr8.2:37037644-37037663 | MS.gene65573:intron | 25.0% |
! | CATGCAAATGAATAACAAAA+TGG | - | chr8.2:37037215-37037234 | None:intergenic | 25.0% |
! | GATATACCTTGGTTATATTA+GGG | - | chr8.2:37038458-37038477 | None:intergenic | 25.0% |
! | GTAAAGCTTCAAGAAAATTA+CGG | + | chr8.2:37038606-37038625 | MS.gene65573:intron | 25.0% |
! | TATCTCCATATTTAAAGACT+AGG | + | chr8.2:37039869-37039888 | MS.gene65573:intron | 25.0% |
! | TTATCATTTGATTCAAACCA+TGG | + | chr8.2:37038201-37038220 | MS.gene65573:CDS | 25.0% |
!! | AATATATAATGGAATTGCAG+AGG | + | chr8.2:37038737-37038756 | MS.gene65573:CDS | 25.0% |
!! | ATCAACCTAGTCTTTAAATA+TGG | - | chr8.2:37039877-37039896 | None:intergenic | 25.0% |
!! | GAGGTAAATTAATTTTTGTG+TGG | + | chr8.2:37037735-37037754 | MS.gene65573:intron | 25.0% |
!! | GGAATGTAAAAAGTATGATT+TGG | - | chr8.2:37039347-37039366 | None:intergenic | 25.0% |
!!! | AGTTTAGTTTGGTTTTATCT+TGG | + | chr8.2:37039306-37039325 | MS.gene65573:intron | 25.0% |
!!! | CAAAGTTCTGAACATTATTA+TGG | + | chr8.2:37039204-37039223 | MS.gene65573:CDS | 25.0% |
!!! | CAAGTTTTAATCCCTATTAT+TGG | + | chr8.2:37037848-37037867 | MS.gene65573:CDS | 25.0% |
!!! | CGTTGTTTTTTATTAAGTCA+TGG | + | chr8.2:37038965-37038984 | MS.gene65573:intron | 25.0% |
!!! | TAAAAAGTATGATTTGGTGT+GGG | - | chr8.2:37039341-37039360 | None:intergenic | 25.0% |
!!! | TACAATCATTTTAGAACAGA+AGG | - | chr8.2:37037938-37037957 | None:intergenic | 25.0% |
!!! | TATGTTGTTGTTTGGAAATA+TGG | + | chr8.2:37037163-37037182 | MS.gene65573:CDS | 25.0% |
!!! | TTAACTGTTAATGTTTTGAC+AGG | + | chr8.2:37037811-37037830 | MS.gene65573:intron | 25.0% |
AACATAGCCTAATCATTCTT+TGG | - | chr8.2:37039416-37039435 | None:intergenic | 30.0% | |
AACCTACACAAGAGAAAAAT+TGG | - | chr8.2:37037386-37037405 | None:intergenic | 30.0% | |
AAGAATGATTAGGCTATGTT+TGG | + | chr8.2:37039416-37039435 | MS.gene65573:intron | 30.0% | |
AAGGGAATCTTATGAACTTA+CGG | - | chr8.2:37039938-37039957 | None:intergenic | 30.0% | |
AATATGGAAATGATCCAACT+AGG | + | chr8.2:37037179-37037198 | MS.gene65573:CDS | 30.0% | |
AATCTTATGAACTTACGGAT+GGG | - | chr8.2:37039933-37039952 | None:intergenic | 30.0% | |
ACATTATTATGGTTGAGGTA+AGG | + | chr8.2:37039215-37039234 | MS.gene65573:intron | 30.0% | |
AGACGAACTTTGATTAAGAT+CGG | - | chr8.2:37038890-37038909 | None:intergenic | 30.0% | |
AGAGAAAGAATTTCAAGAAG+AGG | + | chr8.2:37038762-37038781 | MS.gene65573:CDS | 30.0% | |
AGCTCAAATACTACTTGAAA+TGG | - | chr8.2:37039582-37039601 | None:intergenic | 30.0% | |
ATGGAAGCAATAGATTCATT+TGG | + | chr8.2:37039142-37039161 | MS.gene65573:CDS | 30.0% | |
CATTATTATGGTTGAGGTAA+GGG | + | chr8.2:37039216-37039235 | MS.gene65573:intron | 30.0% | |
CTAAAAATCTTATCACAGAG+AGG | + | chr8.2:37038382-37038401 | MS.gene65573:CDS | 30.0% | |
GAGTAAAGAGACATTGTAAA+AGG | - | chr8.2:37037566-37037585 | None:intergenic | 30.0% | |
GATAGAGAATCAATGAAACA+GGG | - | chr8.2:37039911-37039930 | None:intergenic | 30.0% | |
GCAAACATAACAACATTTGA+TGG | + | chr8.2:37039181-37039200 | MS.gene65573:CDS | 30.0% | |
GCTAAAATTGAAGTTCATGT+TGG | - | chr8.2:37038139-37038158 | None:intergenic | 30.0% | |
GGATGCGATTGAATATATAA+TGG | + | chr8.2:37038726-37038745 | MS.gene65573:CDS | 30.0% | |
TAACCTCGTTACAATAGAAA+GGG | - | chr8.2:37039956-37039975 | None:intergenic | 30.0% | |
TAACTTGAGAAAATGACATC+AGG | - | chr8.2:37037280-37037299 | None:intergenic | 30.0% | |
TATAAAGCAAGAAGCCATAT+CGG | + | chr8.2:37038101-37038120 | MS.gene65573:CDS | 30.0% | |
TATGAAACATAGATACTCCT+CGG | + | chr8.2:37037243-37037262 | MS.gene65573:intron | 30.0% | |
TCACGGTATTTATATCTTCT+GGG | - | chr8.2:37038053-37038072 | None:intergenic | 30.0% | |
TCTGAACATTATTATGGTTG+AGG | + | chr8.2:37039210-37039229 | MS.gene65573:CDS | 30.0% | |
TTAACCTCGTTACAATAGAA+AGG | - | chr8.2:37039957-37039976 | None:intergenic | 30.0% | |
TTACAATGTCTCTTTACTCT+AGG | + | chr8.2:37037567-37037586 | MS.gene65573:CDS | 30.0% | |
TTCACGGTATTTATATCTTC+TGG | - | chr8.2:37038054-37038073 | None:intergenic | 30.0% | |
TTTAGTCCCTAATATAACCA+AGG | + | chr8.2:37038449-37038468 | MS.gene65573:CDS | 30.0% | |
TTTGAGCTTATAGCTTACAT+CGG | + | chr8.2:37039594-37039613 | MS.gene65573:intron | 30.0% | |
! | AACAAGGGCTTTTTATTCTA+AGG | + | chr8.2:37038424-37038443 | MS.gene65573:CDS | 30.0% |
! | AACTAGCTCATGATTTTTCA+TGG | - | chr8.2:37039290-37039309 | None:intergenic | 30.0% |
! | AACTTTTACCAAAATCATGG+TGG | - | chr8.2:37038581-37038600 | None:intergenic | 30.0% |
! | AATCATGAGCTAGTTTAGTT+TGG | + | chr8.2:37039295-37039314 | MS.gene65573:intron | 30.0% |
! | ATCCAATTTTTCTCTTGTGT+AGG | + | chr8.2:37037381-37037400 | MS.gene65573:intron | 30.0% |
! | GGTTGATTCAAATATTCAAG+AGG | - | chr8.2:37038237-37038256 | None:intergenic | 30.0% |
!! | AACTTCAATTTTAGCATGGA+AGG | + | chr8.2:37038144-37038163 | MS.gene65573:CDS | 30.0% |
!! | CATGAACTTCAATTTTAGCA+TGG | + | chr8.2:37038140-37038159 | MS.gene65573:CDS | 30.0% |
!! | GTAAAAAGTATGATTTGGTG+TGG | - | chr8.2:37039342-37039361 | None:intergenic | 30.0% |
!! | GTTTTAATCCCTATTATTGG+CGG | + | chr8.2:37037851-37037870 | MS.gene65573:CDS | 30.0% |
AAAGACAAAGAACTTGCAGA+AGG | + | chr8.2:37038844-37038863 | MS.gene65573:CDS | 35.0% | |
AATGATAAGTGCTCAGTTGA+AGG | - | chr8.2:37038189-37038208 | None:intergenic | 35.0% | |
AGAATTTCAAGAAGAGGTCA+AGG | + | chr8.2:37038768-37038787 | MS.gene65573:CDS | 35.0% | |
AGGAGGAACAGAATAAAACA+AGG | + | chr8.2:37038408-37038427 | MS.gene65573:CDS | 35.0% | |
AGTTAAAACCAAGACTTGTG+AGG | + | chr8.2:37037526-37037545 | MS.gene65573:CDS | 35.0% | |
ATCTTATCACAGAGAGGAAT+AGG | + | chr8.2:37038388-37038407 | MS.gene65573:CDS | 35.0% | |
ATTCCCTTTCTATTGTAACG+AGG | + | chr8.2:37039950-37039969 | MS.gene65573:intron | 35.0% | |
CTTCCTTCCAAAGAATGATT+AGG | + | chr8.2:37039406-37039425 | MS.gene65573:intron | 35.0% | |
GAATCTTATGAACTTACGGA+TGG | - | chr8.2:37039934-37039953 | None:intergenic | 35.0% | |
GGAGGAACAGAATAAAACAA+GGG | + | chr8.2:37038409-37038428 | MS.gene65573:CDS | 35.0% | |
GGATAGAGAATCAATGAAAC+AGG | - | chr8.2:37039912-37039931 | None:intergenic | 35.0% | |
GTGAAGTATAGACTCAAACA+CGG | - | chr8.2:37037346-37037365 | None:intergenic | 35.0% | |
TAGCCTAATCATTCTTTGGA+AGG | - | chr8.2:37039412-37039431 | None:intergenic | 35.0% | |
TCTTGTGTAGGTTTATTGAG+TGG | + | chr8.2:37037393-37037412 | MS.gene65573:intron | 35.0% | |
TGAGTTTGCCAGAAATACAT+TGG | + | chr8.2:37038554-37038573 | MS.gene65573:intron | 35.0% | |
TGTAGGTTTATTGAGTGGTT+AGG | + | chr8.2:37037398-37037417 | MS.gene65573:intron | 35.0% | |
TGTTTGAGTCTATACTTCAC+AGG | + | chr8.2:37037346-37037365 | MS.gene65573:intron | 35.0% | |
! | ATCATTTGGCTTCCATTTGT+AGG | + | chr8.2:37037483-37037502 | MS.gene65573:CDS | 35.0% |
! | ATGTGCTGATATGAACTTCA+CGG | - | chr8.2:37038070-37038089 | None:intergenic | 35.0% |
! | ATTTTGCACAAGTACCTGTT+TGG | + | chr8.2:37038524-37038543 | MS.gene65573:intron | 35.0% |
! | CTGAAATTTTATTGCGTCTG+TGG | - | chr8.2:37038269-37038288 | None:intergenic | 35.0% |
! | CTTGGGATTATGTTGTTGTT+TGG | + | chr8.2:37037155-37037174 | MS.gene65573:CDS | 35.0% |
! | GTGTCTAATCCTCTCAATTT+TGG | + | chr8.2:37038677-37038696 | MS.gene65573:intron | 35.0% |
! | TCATTTGGCTTCCATTTGTA+GGG | + | chr8.2:37037484-37037503 | MS.gene65573:CDS | 35.0% |
!! | AAAAAGGGTATCCCTACAAA+TGG | - | chr8.2:37037498-37037517 | None:intergenic | 35.0% |
AAATTGTCTACGGCTCTGTT+TGG | - | chr8.2:37039812-37039831 | None:intergenic | 40.0% | |
ACAAGTACCTGTTTGGTTGA+CGG | + | chr8.2:37038531-37038550 | MS.gene65573:intron | 40.0% | |
ATGGTGGTCCAATGTATTTC+TGG | - | chr8.2:37038565-37038584 | None:intergenic | 40.0% | |
CAACAAGACCGCCAATAATA+GGG | - | chr8.2:37037862-37037881 | None:intergenic | 40.0% | |
CAAGCTTTCCTCTCAACAAA+GGG | - | chr8.2:37037139-37037158 | None:intergenic | 40.0% | |
CAAGTAGAAGTGAATCACGT+CGG | + | chr8.2:37039058-37039077 | MS.gene65573:CDS | 40.0% | |
CAATATCACAGCAACCAAGA+TGG | + | chr8.2:37037703-37037722 | MS.gene65573:CDS | 40.0% | |
CTATGTTTGGCAAGACAAAC+TGG | + | chr8.2:37039429-37039448 | MS.gene65573:intron | 40.0% | |
CTGATTCCACTAGAAAGACA+CGG | + | chr8.2:37038908-37038927 | MS.gene65573:CDS | 40.0% | |
CTTTGATTAAGATCGGTGAG+AGG | - | chr8.2:37038883-37038902 | None:intergenic | 40.0% | |
CTTTGTTGAGAGGAAAGCTT+GGG | + | chr8.2:37037138-37037157 | MS.gene65573:CDS | 40.0% | |
GCATGATACACTTTCTCTTG+AGG | - | chr8.2:37038363-37038382 | None:intergenic | 40.0% | |
TCAACAAGACCGCCAATAAT+AGG | - | chr8.2:37037863-37037882 | None:intergenic | 40.0% | |
TGAGAAGGTGAAGTTGAAAG+AGG | + | chr8.2:37037445-37037464 | MS.gene65573:CDS | 40.0% | |
TTATCACAGAGAGGAATAGG+AGG | + | chr8.2:37038391-37038410 | MS.gene65573:CDS | 40.0% | |
TTCTTAGACCCTTTGTTGAG+AGG | + | chr8.2:37037128-37037147 | MS.gene65573:CDS | 40.0% | |
! | ACATTGGACCACCATGATTT+TGG | + | chr8.2:37038570-37038589 | MS.gene65573:intron | 40.0% |
! | ACGAGGTTAAATTTTGTCCC+AGG | + | chr8.2:37039967-37039986 | MS.gene65573:intron | 40.0% |
! | AGAAGCAAGGTGTGTTTTCA+AGG | + | chr8.2:37039116-37039135 | MS.gene65573:CDS | 40.0% |
! | CTTTAGAAGTTGAGGACTGT+GGG | + | chr8.2:37038791-37038810 | MS.gene65573:CDS | 40.0% |
! | CTTTGGAAGGAAGTTACAAG+TGG | - | chr8.2:37039399-37039418 | None:intergenic | 40.0% |
! | TTGTGGTGGAAACATTGAGA+AGG | + | chr8.2:37037430-37037449 | MS.gene65573:CDS | 40.0% |
!! | AGGTGTGTTTTCAAGGTTGA+TGG | + | chr8.2:37039123-37039142 | MS.gene65573:CDS | 40.0% |
!! | ATCCTCTCAATTTTGGCAGA+TGG | + | chr8.2:37038684-37038703 | MS.gene65573:intron | 40.0% |
!!! | ATGGGTTTTGAGTACCTAGT+TGG | - | chr8.2:37037196-37037215 | None:intergenic | 40.0% |
!!! | ATGTTTTGACAGGACTCAGT+TGG | + | chr8.2:37037821-37037840 | MS.gene65573:intron | 40.0% |
AAACTCACCGTCAACCAAAC+AGG | - | chr8.2:37038541-37038560 | None:intergenic | 45.0% | |
AATATCCTGCACAGTTGCCT+GGG | - | chr8.2:37039987-37040006 | None:intergenic | 45.0% | |
ACCAAGATGGCTTATCCATG+AGG | + | chr8.2:37037716-37037735 | MS.gene65573:CDS | 45.0% | |
ACCTCATGGATAAGCCATCT+TGG | - | chr8.2:37037720-37037739 | None:intergenic | 45.0% | |
CAAGAGGAATCAAGCATCCA+TGG | - | chr8.2:37038221-37038240 | None:intergenic | 45.0% | |
CCAAGCTTTCCTCTCAACAA+AGG | - | chr8.2:37037140-37037159 | None:intergenic | 45.0% | |
CCTTTGTTGAGAGGAAAGCT+TGG | + | chr8.2:37037137-37037156 | MS.gene65573:CDS | 45.0% | |
GATCTACAGTATCCATGCAG+AGG | + | chr8.2:37037677-37037696 | MS.gene65573:intron | 45.0% | |
GATTAAGATCGGTGAGAGGT+AGG | - | chr8.2:37038879-37038898 | None:intergenic | 45.0% | |
GTCCATCTGCCAAAATTGAG+AGG | - | chr8.2:37038689-37038708 | None:intergenic | 45.0% | |
GTGATATTGCTACCTCTGCA+TGG | - | chr8.2:37037692-37037711 | None:intergenic | 45.0% | |
TTCCACTAGAAAGACACGGA+TGG | + | chr8.2:37038912-37038931 | MS.gene65573:CDS | 45.0% | |
! | TGGTTAGGTTGTTGCTGTTG+TGG | + | chr8.2:37037413-37037432 | MS.gene65573:CDS | 45.0% |
! | TTAGGTTGTTGCTGTTGTGG+TGG | + | chr8.2:37037416-37037435 | MS.gene65573:CDS | 45.0% |
! | TTGCGTCTGTGGCTTTTAAG+TGG | - | chr8.2:37038258-37038277 | None:intergenic | 45.0% |
!! | GCTTTAGAAGTTGAGGACTG+TGG | + | chr8.2:37038790-37038809 | MS.gene65573:CDS | 45.0% |
!! | GGTCAAGGCTTTAGAAGTTG+AGG | + | chr8.2:37038783-37038802 | MS.gene65573:CDS | 45.0% |
!! | TCGAGTGTCGATTGTGGAAA+TGG | + | chr8.2:37038306-37038325 | MS.gene65573:CDS | 45.0% |
!! | TGTAGTTCGAGTGTCGATTG+TGG | + | chr8.2:37038300-37038319 | MS.gene65573:CDS | 45.0% |
!! | AAATATTAAAAGATTATATT+AGG | - | chr8.2:37039029-37039048 | None:intergenic | 5.0% |
ACTAGACACGACACGGAACA+TGG | - | chr8.2:37037321-37037340 | None:intergenic | 50.0% | |
AGCAAGAGCCTCACAAGTCT+TGG | - | chr8.2:37037537-37037556 | None:intergenic | 50.0% | |
ATCAGGACACGTCTAATCCG+AGG | - | chr8.2:37037263-37037282 | None:intergenic | 50.0% | |
ATCGGTGAGAGGTAGGTTTC+TGG | - | chr8.2:37038872-37038891 | None:intergenic | 50.0% | |
CACTAGAAAGACACGGATGG+AGG | + | chr8.2:37038915-37038934 | MS.gene65573:CDS | 50.0% | |
CTCCATCCGTGTCTTTCTAG+TGG | - | chr8.2:37038917-37038936 | None:intergenic | 50.0% | |
GAATATCCTGCACAGTTGCC+TGG | - | chr8.2:37039988-37040007 | None:intergenic | 50.0% | |
GGACAGAGTAGCGATTCTTG+AGG | + | chr8.2:37038705-37038724 | MS.gene65573:CDS | 50.0% | |
GTAGAAGTGAATCACGTCGG+CGG | + | chr8.2:37039061-37039080 | MS.gene65573:CDS | 50.0% | |
TTGTGCTGTGAGCAGAAGCA+AGG | + | chr8.2:37039103-37039122 | MS.gene65573:CDS | 50.0% | |
CACGGACACTAGACACGACA+CGG | - | chr8.2:37037328-37037347 | None:intergenic | 55.0% | |
TTTGTCCCAGGCAACTGTGC+AGG | + | chr8.2:37039979-37039998 | MS.gene65573:intron | 55.0% | |
! | GGCGTAGCTATGTGCCGATA+TGG | - | chr8.2:37038118-37038137 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 37037112 | 37040018 | 37037112 | ID=MS.gene65573 |
chr8.2 | mRNA | 37037112 | 37040018 | 37037112 | ID=MS.gene65573.t1;Parent=MS.gene65573 |
chr8.2 | exon | 37037112 | 37037200 | 37037112 | ID=MS.gene65573.t1.exon1;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37037112 | 37037200 | 37037112 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37037403 | 37037588 | 37037403 | ID=MS.gene65573.t1.exon2;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37037403 | 37037588 | 37037403 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37037686 | 37037737 | 37037686 | ID=MS.gene65573.t1.exon3;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37037686 | 37037737 | 37037686 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37037833 | 37037901 | 37037833 | ID=MS.gene65573.t1.exon4;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37037833 | 37037901 | 37037833 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37038048 | 37038470 | 37038048 | ID=MS.gene65573.t1.exon5;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37038048 | 37038470 | 37038048 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37038703 | 37038936 | 37038703 | ID=MS.gene65573.t1.exon6;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37038703 | 37038936 | 37038703 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37039055 | 37039231 | 37039055 | ID=MS.gene65573.t1.exon7;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37039055 | 37039231 | 37039055 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
chr8.2 | exon | 37039989 | 37040018 | 37039989 | ID=MS.gene65573.t1.exon8;Parent=MS.gene65573.t1 |
chr8.2 | CDS | 37039989 | 37040018 | 37039989 | ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1 |
Gene Sequence |
Protein sequence |