AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65573


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65573.t1 MTR_8g064700 89.976 419 31 2 1 419 1 408 0.0 783
MS.gene65573.t1 MTR_1g112680 30.000 500 257 14 3 416 9 501 3.32e-66 220
MS.gene65573.t1 MTR_2g038040 35.260 173 108 2 244 415 51 220 6.15e-27 108
MS.gene65573.t1 MTR_4g091910 30.252 238 110 6 180 416 12 194 5.24e-21 90.9
MS.gene65573.t1 MTR_3g498695 31.308 214 120 5 218 419 270 468 7.29e-20 92.0
MS.gene65573.t1 MTR_3g498695 31.163 215 120 5 218 419 270 469 1.12e-19 91.3
MS.gene65573.t1 MTR_3g030700 34.091 176 98 3 244 415 195 356 1.69e-19 89.7
MS.gene65573.t1 MTR_4g091990 31.980 197 92 5 216 404 8 170 1.74e-18 83.6
MS.gene65573.t1 MTR_2g084280 33.742 163 89 4 237 398 125 269 3.18e-18 85.1
MS.gene65573.t1 MTR_2g081040 30.939 181 102 4 244 415 176 342 6.08e-18 85.1
MS.gene65573.t1 MTR_4g057270 30.108 186 111 5 236 419 140 308 1.35e-17 84.0
MS.gene65573.t1 MTR_3g104100 30.387 181 103 4 244 415 194 360 1.78e-17 84.0
MS.gene65573.t1 MTR_7g083900 31.472 197 93 6 244 419 285 460 3.25e-16 80.9
MS.gene65573.t1 MTR_7g083900 31.633 196 93 6 244 419 285 459 3.52e-16 80.5
MS.gene65573.t1 MTR_4g097950 31.429 175 101 5 225 393 49 210 1.81e-15 76.3
MS.gene65573.t1 MTR_4g092700 27.843 255 160 8 159 409 73 307 1.12e-14 75.1
MS.gene65573.t1 MTR_2g010450 29.448 163 101 4 247 409 179 327 2.55e-13 71.2
MS.gene65573.t1 MTR_0250s0040 26.220 164 104 3 247 409 90 237 4.54e-13 69.3
MS.gene65573.t1 MTR_4g067010 26.347 167 97 3 247 409 149 293 1.19e-12 68.9
MS.gene65573.t1 MTR_5g014600 26.590 173 105 4 247 409 151 311 1.71e-12 68.6
MS.gene65573.t1 MTR_5g030430 29.341 167 108 4 249 414 497 654 2.13e-12 69.3
MS.gene65573.t1 MTR_0246s0020 26.627 169 112 5 247 415 200 356 3.19e-12 68.2
MS.gene65573.t1 MTR_0246s0020 25.767 163 110 4 247 409 200 351 6.43e-12 67.0
MS.gene65573.t1 MTR_4g009540 22.713 317 204 10 96 409 29 307 7.29e-12 66.2
MS.gene65573.t1 MTR_4g009540 22.713 317 204 10 96 409 29 307 1.20e-11 65.9
MS.gene65573.t1 MTR_8g067280 28.395 162 105 4 250 410 467 618 1.44e-11 66.6
MS.gene65573.t1 MTR_0011s0260 26.380 163 105 3 247 409 185 332 3.33e-11 64.7
MS.gene65573.t1 MTR_8g024770 22.941 340 192 12 108 413 129 432 8.09e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65573.t1 AT1G10610 33.410 437 246 10 3 416 10 424 5.18e-69 225
MS.gene65573.t1 AT1G10610 31.873 411 235 10 29 416 6 394 5.21e-54 185
MS.gene65573.t1 AT1G10610 29.738 343 202 7 87 411 1 322 2.22e-35 134
MS.gene65573.t1 AT2G16910 42.763 152 73 5 3 147 8 152 6.49e-35 136
MS.gene65573.t1 AT2G16910 38.916 203 116 4 216 410 284 486 1.04e-28 118
MS.gene65573.t1 AT5G57150 33.721 172 104 4 244 413 54 217 1.85e-27 109
MS.gene65573.t1 AT5G57150 34.706 170 101 4 244 411 53 214 3.33e-27 109
MS.gene65573.t1 AT5G57150 33.333 174 106 4 244 415 54 219 3.56e-27 108
MS.gene65573.t1 AT5G57150 34.132 167 104 3 244 410 53 213 5.46e-27 107
MS.gene65573.t1 AT5G57150 34.132 167 104 3 244 410 54 214 1.02e-26 108
MS.gene65573.t1 AT4G29930 31.667 180 107 5 244 412 53 227 5.89e-22 95.1
MS.gene65573.t1 AT4G29930 31.667 180 107 5 244 412 53 227 5.89e-22 95.1
MS.gene65573.t1 AT4G29930 31.844 179 106 5 244 411 53 226 6.41e-22 94.7
MS.gene65573.t1 AT4G29930 29.167 168 99 3 244 411 53 200 6.54e-21 91.3
MS.gene65573.t1 AT4G29930 28.402 169 98 3 244 412 53 198 1.41e-20 90.5
MS.gene65573.t1 AT4G29930 28.571 168 97 3 244 411 53 197 1.49e-20 90.1
MS.gene65573.t1 AT2G28160 31.250 160 96 3 240 398 126 272 3.04e-18 85.5
MS.gene65573.t1 AT2G28160 31.250 160 96 3 240 398 126 272 3.22e-18 85.5
MS.gene65573.t1 AT1G12860 33.140 172 106 3 244 415 266 428 8.78e-18 85.5
MS.gene65573.t1 AT1G12860 33.533 167 102 3 244 410 266 423 1.47e-17 84.7
MS.gene65573.t1 AT4G29930 46.575 73 35 1 244 316 53 121 6.08e-16 76.3
MS.gene65573.t1 AT3G26744 29.379 177 100 2 244 410 306 467 2.49e-15 78.2
MS.gene65573.t1 AT3G26744 29.379 177 100 2 244 410 306 467 2.52e-15 78.2
MS.gene65573.t1 AT3G26744 29.379 177 100 2 244 410 306 467 2.52e-15 78.2
MS.gene65573.t1 AT3G26744 29.379 177 100 2 244 410 306 467 2.52e-15 78.2
MS.gene65573.t1 AT4G21330 28.272 191 110 5 230 414 16 185 4.83e-15 73.9
MS.gene65573.t1 AT5G46760 29.146 199 111 6 230 414 387 569 2.49e-13 72.4
MS.gene65573.t1 AT4G37850 30.286 175 100 6 246 416 153 309 8.70e-13 69.3
MS.gene65573.t1 AT4G37850 30.286 175 100 6 246 416 153 309 8.70e-13 69.3
MS.gene65573.t1 AT4G17880 32.000 175 82 9 249 414 420 566 4.77e-12 68.2
MS.gene65573.t1 AT1G63650 25.714 175 110 4 237 401 400 564 9.19e-12 67.4
MS.gene65573.t1 AT1G63650 25.714 175 110 4 237 401 400 564 9.19e-12 67.4
MS.gene65573.t1 AT1G63650 25.714 175 110 4 237 401 400 564 9.19e-12 67.4
MS.gene65573.t1 AT1G32640 31.737 167 94 7 249 414 456 603 1.10e-11 67.0
MS.gene65573.t1 AT5G41315 24.737 190 109 3 233 401 434 610 2.61e-11 65.9
MS.gene65573.t1 AT5G41315 24.737 190 109 3 233 401 429 605 2.67e-11 65.9
MS.gene65573.t1 AT5G41315 24.737 190 109 3 233 401 437 613 2.74e-11 65.9

Find 77 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATACCTTGGTTATATT+AGG 0.201515 8.2:-37038456 None:intergenic
TATGTTGTTGTTTGGAAATA+TGG 0.204753 8.2:+37037163 MS.gene65573:CDS
TCAACAAGACCGCCAATAAT+AGG 0.227144 8.2:-37037860 None:intergenic
TTCACGGTATTTATATCTTC+TGG 0.230774 8.2:-37038051 None:intergenic
CAAAGTTCTGAACATTATTA+TGG 0.236450 8.2:+37039204 MS.gene65573:CDS
ATCGGTGAGAGGTAGGTTTC+TGG 0.265091 8.2:-37038869 None:intergenic
GATATACCTTGGTTATATTA+GGG 0.312920 8.2:-37038455 None:intergenic
GAGTAAAGAGACATTGTAAA+AGG 0.338943 8.2:-37037563 None:intergenic
CTTGGGATTATGTTGTTGTT+TGG 0.348246 8.2:+37037155 MS.gene65573:CDS
ATGGAAGCAATAGATTCATT+TGG 0.358052 8.2:+37039142 MS.gene65573:CDS
TCGAGTGTCGATTGTGGAAA+TGG 0.359972 8.2:+37038306 MS.gene65573:CDS
TCACGGTATTTATATCTTCT+GGG 0.373046 8.2:-37038050 None:intergenic
AATACTCTCTGATTTACTTC+GGG 0.390178 8.2:-37040009 None:intergenic
TTACAATGTCTCTTTACTCT+AGG 0.394848 8.2:+37037567 MS.gene65573:CDS
CAACAAGACCGCCAATAATA+GGG 0.398653 8.2:-37037859 None:intergenic
TGTAGGTTTATTGAGTGGTT+AGG 0.409602 8.2:+37037398 MS.gene65573:intron
GCAAACATAACAACATTTGA+TGG 0.413292 8.2:+37039181 MS.gene65573:CDS
ACCTCATGGATAAGCCATCT+TGG 0.422456 8.2:-37037717 None:intergenic
ATCATTTGGCTTCCATTTGT+AGG 0.425186 8.2:+37037483 MS.gene65573:CDS
GGATGCGATTGAATATATAA+TGG 0.425745 8.2:+37038726 MS.gene65573:CDS
AGCAAGAGCCTCACAAGTCT+TGG 0.436170 8.2:-37037534 None:intergenic
ATCTTATCACAGAGAGGAAT+AGG 0.438830 8.2:+37038388 MS.gene65573:CDS
AATTTGTGAAGAATATCATT+TGG 0.442609 8.2:+37037469 MS.gene65573:CDS
CTTTGTTGAGAGGAAAGCTT+GGG 0.443033 8.2:+37037138 MS.gene65573:CDS
TCTGAACATTATTATGGTTG+AGG 0.445865 8.2:+37039210 MS.gene65573:CDS
AATGATAAGTGCTCAGTTGA+AGG 0.446352 8.2:-37038186 None:intergenic
GGCGTAGCTATGTGCCGATA+TGG 0.456399 8.2:-37038115 None:intergenic
TGGTTAGGTTGTTGCTGTTG+TGG 0.457561 8.2:+37037413 MS.gene65573:CDS
TCATTTGGCTTCCATTTGTA+GGG 0.464580 8.2:+37037484 MS.gene65573:CDS
AAATACTCTCTGATTTACTT+CGG 0.472655 8.2:-37040010 None:intergenic
TTTGTCCCAGGCAACTGTGC+AGG 0.479947 8.2:+37039979 MS.gene65573:intron
TATAAAGCAAGAAGCCATAT+CGG 0.481509 8.2:+37038101 MS.gene65573:CDS
ATGTGCTGATATGAACTTCA+CGG 0.499222 8.2:-37038067 None:intergenic
CCTTTGTTGAGAGGAAAGCT+TGG 0.499952 8.2:+37037137 MS.gene65573:CDS
TGAGAAGGTGAAGTTGAAAG+AGG 0.513233 8.2:+37037445 MS.gene65573:CDS
AGAATTTCAAGAAGAGGTCA+AGG 0.513955 8.2:+37038768 MS.gene65573:CDS
CAAGAGGAATCAAGCATCCA+TGG 0.518928 8.2:-37038218 None:intergenic
TTCTTAGACCCTTTGTTGAG+AGG 0.521603 8.2:+37037128 MS.gene65573:CDS
TTAGGTTGTTGCTGTTGTGG+TGG 0.522064 8.2:+37037416 MS.gene65573:CDS
CTCCATCCGTGTCTTTCTAG+TGG 0.522923 8.2:-37038914 None:intergenic
TTATCATTTGATTCAAACCA+TGG 0.523144 8.2:+37038201 MS.gene65573:CDS
CAAGCTTTCCTCTCAACAAA+GGG 0.525491 8.2:-37037136 None:intergenic
ATAAAATTTCAGCGAAACAT+CGG 0.527179 8.2:+37038277 MS.gene65573:CDS
GGTCAAGGCTTTAGAAGTTG+AGG 0.528592 8.2:+37038783 MS.gene65573:CDS
AAATAAAGAAAATATTGTAA+AGG 0.541349 8.2:+37038335 MS.gene65573:CDS
CTTTAGAAGTTGAGGACTGT+GGG 0.546640 8.2:+37038791 MS.gene65573:CDS
AGAGAAAGAATTTCAAGAAG+AGG 0.551008 8.2:+37038762 MS.gene65573:CDS
CCAAGCTTTCCTCTCAACAA+AGG 0.551769 8.2:-37037137 None:intergenic
TCTTGTGTAGGTTTATTGAG+TGG 0.557166 8.2:+37037393 MS.gene65573:intron
TGTAGTTCGAGTGTCGATTG+TGG 0.557198 8.2:+37038300 MS.gene65573:CDS
GATTAAGATCGGTGAGAGGT+AGG 0.559917 8.2:-37038876 None:intergenic
GCATGATACACTTTCTCTTG+AGG 0.560146 8.2:-37038360 None:intergenic
AGACGAACTTTGATTAAGAT+CGG 0.560787 8.2:-37038887 None:intergenic
GTGATATTGCTACCTCTGCA+TGG 0.560850 8.2:-37037689 None:intergenic
GCTAAAATTGAAGTTCATGT+TGG 0.562915 8.2:-37038136 None:intergenic
CAATATCACAGCAACCAAGA+TGG 0.602156 8.2:+37037703 MS.gene65573:CDS
GGTTGATTCAAATATTCAAG+AGG 0.603504 8.2:-37038234 None:intergenic
GCTTTAGAAGTTGAGGACTG+TGG 0.603990 8.2:+37038790 MS.gene65573:CDS
AATATGGAAATGATCCAACT+AGG 0.624297 8.2:+37037179 MS.gene65573:CDS
AATATATAATGGAATTGCAG+AGG 0.626528 8.2:+37038737 MS.gene65573:CDS
AGGAGGAACAGAATAAAACA+AGG 0.627576 8.2:+37038408 MS.gene65573:CDS
AAAGACAAAGAACTTGCAGA+AGG 0.635182 8.2:+37038844 MS.gene65573:CDS
GATCTACAGTATCCATGCAG+AGG 0.649229 8.2:+37037677 MS.gene65573:intron
TTATCACAGAGAGGAATAGG+AGG 0.649501 8.2:+37038391 MS.gene65573:CDS
GGACAGAGTAGCGATTCTTG+AGG 0.651020 8.2:+37038705 MS.gene65573:CDS
TTCCACTAGAAAGACACGGA+TGG 0.652546 8.2:+37038912 MS.gene65573:CDS
AGTTAAAACCAAGACTTGTG+AGG 0.657274 8.2:+37037526 MS.gene65573:CDS
ACCAAGATGGCTTATCCATG+AGG 0.658504 8.2:+37037716 MS.gene65573:CDS
CTGATTCCACTAGAAAGACA+CGG 0.659773 8.2:+37038908 MS.gene65573:CDS
TTTAGTCCCTAATATAACCA+AGG 0.660020 8.2:+37038449 MS.gene65573:CDS
CACTAGAAAGACACGGATGG+AGG 0.661720 8.2:+37038915 MS.gene65573:CDS
CTTTGATTAAGATCGGTGAG+AGG 0.675164 8.2:-37038880 None:intergenic
TTGTGCTGTGAGCAGAAGCA+AGG 0.681055 8.2:+37039103 MS.gene65573:CDS
TTGTGGTGGAAACATTGAGA+AGG 0.683212 8.2:+37037430 MS.gene65573:CDS
GGAGGAACAGAATAAAACAA+GGG 0.689769 8.2:+37038409 MS.gene65573:CDS
GTAGAAGTGAATCACGTCGG+CGG 0.690977 8.2:+37039061 MS.gene65573:CDS
CAAGTAGAAGTGAATCACGT+CGG 0.698680 8.2:+37039058 MS.gene65573:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAGAAAATATTGTAA+AGG + chr8.2:37038335-37038354 MS.gene65573:CDS 10.0%
!!! ATACAAATTTTAATACTTAT+TGG + chr8.2:37037907-37037926 MS.gene65573:intron 10.0%
!! TTCTATATTTAATCATTGAA+AGG + chr8.2:37037633-37037652 MS.gene65573:intron 15.0%
!!! TTTTTTTATTAAGATAGTGA+GGG - chr8.2:37039630-37039649 None:intergenic 15.0%
!!! TTTTTTTTATTAAGATAGTG+AGG - chr8.2:37039631-37039650 None:intergenic 15.0%
!! AAAATTTACAATCATTCTTC+TGG - chr8.2:37037999-37038018 None:intergenic 20.0%
!! AAATTTACAATCATTCTTCT+GGG - chr8.2:37037998-37038017 None:intergenic 20.0%
!! AATTTGTGAAGAATATCATT+TGG + chr8.2:37037469-37037488 MS.gene65573:CDS 20.0%
!! ACAAAAATTAATTTACCTCA+TGG - chr8.2:37037734-37037753 None:intergenic 20.0%
!! ATGCAAATGAATAACAAAAT+GGG - chr8.2:37037214-37037233 None:intergenic 20.0%
!! ATTGAGTATTTAAATTAGAC+AGG + chr8.2:37039369-37039388 MS.gene65573:intron 20.0%
!! TAAACAATTTAGATATACCT+TGG - chr8.2:37038469-37038488 None:intergenic 20.0%
!! TATTTATGCACTTAACTAAT+AGG - chr8.2:37039249-37039268 None:intergenic 20.0%
!! TCTAATTTAAATACTCAATC+TGG - chr8.2:37039368-37039387 None:intergenic 20.0%
!!! AATTTTATTGCATCTTTTCT+TGG + chr8.2:37039000-37039019 MS.gene65573:intron 20.0%
!!! TAGTTTTTCAAAATTGTCTA+CGG - chr8.2:37039822-37039841 None:intergenic 20.0%
!!! TATAACTTTTACCAAAATCA+TGG - chr8.2:37038584-37038603 None:intergenic 20.0%
!!! TATATTCGATTTGAAGTATT+CGG - chr8.2:37039726-37039745 None:intergenic 20.0%
!!! TTTAACTTGATGATGAAAAA+GGG - chr8.2:37037513-37037532 None:intergenic 20.0%
!!! TTTTAACTTGATGATGAAAA+AGG - chr8.2:37037514-37037533 None:intergenic 20.0%
! AAAACTAGAGATTTCATTCA+TGG + chr8.2:37039835-37039854 MS.gene65573:intron 25.0%
! AATGAGATTATTGTAGATAG+TGG - chr8.2:37039757-37039776 None:intergenic 25.0%
! AGATATACCTTGGTTATATT+AGG - chr8.2:37038459-37038478 None:intergenic 25.0%
! ATAAAATTTCAGCGAAACAT+CGG + chr8.2:37038277-37038296 MS.gene65573:CDS 25.0%
! ATCATTGAAAGGAAATTCTA+AGG + chr8.2:37037644-37037663 MS.gene65573:intron 25.0%
! CATGCAAATGAATAACAAAA+TGG - chr8.2:37037215-37037234 None:intergenic 25.0%
! GATATACCTTGGTTATATTA+GGG - chr8.2:37038458-37038477 None:intergenic 25.0%
! GTAAAGCTTCAAGAAAATTA+CGG + chr8.2:37038606-37038625 MS.gene65573:intron 25.0%
! TATCTCCATATTTAAAGACT+AGG + chr8.2:37039869-37039888 MS.gene65573:intron 25.0%
! TTATCATTTGATTCAAACCA+TGG + chr8.2:37038201-37038220 MS.gene65573:CDS 25.0%
!! AATATATAATGGAATTGCAG+AGG + chr8.2:37038737-37038756 MS.gene65573:CDS 25.0%
!! ATCAACCTAGTCTTTAAATA+TGG - chr8.2:37039877-37039896 None:intergenic 25.0%
!! GAGGTAAATTAATTTTTGTG+TGG + chr8.2:37037735-37037754 MS.gene65573:intron 25.0%
!! GGAATGTAAAAAGTATGATT+TGG - chr8.2:37039347-37039366 None:intergenic 25.0%
!!! AGTTTAGTTTGGTTTTATCT+TGG + chr8.2:37039306-37039325 MS.gene65573:intron 25.0%
!!! CAAAGTTCTGAACATTATTA+TGG + chr8.2:37039204-37039223 MS.gene65573:CDS 25.0%
!!! CAAGTTTTAATCCCTATTAT+TGG + chr8.2:37037848-37037867 MS.gene65573:CDS 25.0%
!!! CGTTGTTTTTTATTAAGTCA+TGG + chr8.2:37038965-37038984 MS.gene65573:intron 25.0%
!!! TAAAAAGTATGATTTGGTGT+GGG - chr8.2:37039341-37039360 None:intergenic 25.0%
!!! TACAATCATTTTAGAACAGA+AGG - chr8.2:37037938-37037957 None:intergenic 25.0%
!!! TATGTTGTTGTTTGGAAATA+TGG + chr8.2:37037163-37037182 MS.gene65573:CDS 25.0%
!!! TTAACTGTTAATGTTTTGAC+AGG + chr8.2:37037811-37037830 MS.gene65573:intron 25.0%
AACATAGCCTAATCATTCTT+TGG - chr8.2:37039416-37039435 None:intergenic 30.0%
AACCTACACAAGAGAAAAAT+TGG - chr8.2:37037386-37037405 None:intergenic 30.0%
AAGAATGATTAGGCTATGTT+TGG + chr8.2:37039416-37039435 MS.gene65573:intron 30.0%
AAGGGAATCTTATGAACTTA+CGG - chr8.2:37039938-37039957 None:intergenic 30.0%
AATATGGAAATGATCCAACT+AGG + chr8.2:37037179-37037198 MS.gene65573:CDS 30.0%
AATCTTATGAACTTACGGAT+GGG - chr8.2:37039933-37039952 None:intergenic 30.0%
ACATTATTATGGTTGAGGTA+AGG + chr8.2:37039215-37039234 MS.gene65573:intron 30.0%
AGACGAACTTTGATTAAGAT+CGG - chr8.2:37038890-37038909 None:intergenic 30.0%
AGAGAAAGAATTTCAAGAAG+AGG + chr8.2:37038762-37038781 MS.gene65573:CDS 30.0%
AGCTCAAATACTACTTGAAA+TGG - chr8.2:37039582-37039601 None:intergenic 30.0%
ATGGAAGCAATAGATTCATT+TGG + chr8.2:37039142-37039161 MS.gene65573:CDS 30.0%
CATTATTATGGTTGAGGTAA+GGG + chr8.2:37039216-37039235 MS.gene65573:intron 30.0%
CTAAAAATCTTATCACAGAG+AGG + chr8.2:37038382-37038401 MS.gene65573:CDS 30.0%
GAGTAAAGAGACATTGTAAA+AGG - chr8.2:37037566-37037585 None:intergenic 30.0%
GATAGAGAATCAATGAAACA+GGG - chr8.2:37039911-37039930 None:intergenic 30.0%
GCAAACATAACAACATTTGA+TGG + chr8.2:37039181-37039200 MS.gene65573:CDS 30.0%
GCTAAAATTGAAGTTCATGT+TGG - chr8.2:37038139-37038158 None:intergenic 30.0%
GGATGCGATTGAATATATAA+TGG + chr8.2:37038726-37038745 MS.gene65573:CDS 30.0%
TAACCTCGTTACAATAGAAA+GGG - chr8.2:37039956-37039975 None:intergenic 30.0%
TAACTTGAGAAAATGACATC+AGG - chr8.2:37037280-37037299 None:intergenic 30.0%
TATAAAGCAAGAAGCCATAT+CGG + chr8.2:37038101-37038120 MS.gene65573:CDS 30.0%
TATGAAACATAGATACTCCT+CGG + chr8.2:37037243-37037262 MS.gene65573:intron 30.0%
TCACGGTATTTATATCTTCT+GGG - chr8.2:37038053-37038072 None:intergenic 30.0%
TCTGAACATTATTATGGTTG+AGG + chr8.2:37039210-37039229 MS.gene65573:CDS 30.0%
TTAACCTCGTTACAATAGAA+AGG - chr8.2:37039957-37039976 None:intergenic 30.0%
TTACAATGTCTCTTTACTCT+AGG + chr8.2:37037567-37037586 MS.gene65573:CDS 30.0%
TTCACGGTATTTATATCTTC+TGG - chr8.2:37038054-37038073 None:intergenic 30.0%
TTTAGTCCCTAATATAACCA+AGG + chr8.2:37038449-37038468 MS.gene65573:CDS 30.0%
TTTGAGCTTATAGCTTACAT+CGG + chr8.2:37039594-37039613 MS.gene65573:intron 30.0%
! AACAAGGGCTTTTTATTCTA+AGG + chr8.2:37038424-37038443 MS.gene65573:CDS 30.0%
! AACTAGCTCATGATTTTTCA+TGG - chr8.2:37039290-37039309 None:intergenic 30.0%
! AACTTTTACCAAAATCATGG+TGG - chr8.2:37038581-37038600 None:intergenic 30.0%
! AATCATGAGCTAGTTTAGTT+TGG + chr8.2:37039295-37039314 MS.gene65573:intron 30.0%
! ATCCAATTTTTCTCTTGTGT+AGG + chr8.2:37037381-37037400 MS.gene65573:intron 30.0%
! GGTTGATTCAAATATTCAAG+AGG - chr8.2:37038237-37038256 None:intergenic 30.0%
!! AACTTCAATTTTAGCATGGA+AGG + chr8.2:37038144-37038163 MS.gene65573:CDS 30.0%
!! CATGAACTTCAATTTTAGCA+TGG + chr8.2:37038140-37038159 MS.gene65573:CDS 30.0%
!! GTAAAAAGTATGATTTGGTG+TGG - chr8.2:37039342-37039361 None:intergenic 30.0%
!! GTTTTAATCCCTATTATTGG+CGG + chr8.2:37037851-37037870 MS.gene65573:CDS 30.0%
AAAGACAAAGAACTTGCAGA+AGG + chr8.2:37038844-37038863 MS.gene65573:CDS 35.0%
AATGATAAGTGCTCAGTTGA+AGG - chr8.2:37038189-37038208 None:intergenic 35.0%
AGAATTTCAAGAAGAGGTCA+AGG + chr8.2:37038768-37038787 MS.gene65573:CDS 35.0%
AGGAGGAACAGAATAAAACA+AGG + chr8.2:37038408-37038427 MS.gene65573:CDS 35.0%
AGTTAAAACCAAGACTTGTG+AGG + chr8.2:37037526-37037545 MS.gene65573:CDS 35.0%
ATCTTATCACAGAGAGGAAT+AGG + chr8.2:37038388-37038407 MS.gene65573:CDS 35.0%
ATTCCCTTTCTATTGTAACG+AGG + chr8.2:37039950-37039969 MS.gene65573:intron 35.0%
CTTCCTTCCAAAGAATGATT+AGG + chr8.2:37039406-37039425 MS.gene65573:intron 35.0%
GAATCTTATGAACTTACGGA+TGG - chr8.2:37039934-37039953 None:intergenic 35.0%
GGAGGAACAGAATAAAACAA+GGG + chr8.2:37038409-37038428 MS.gene65573:CDS 35.0%
GGATAGAGAATCAATGAAAC+AGG - chr8.2:37039912-37039931 None:intergenic 35.0%
GTGAAGTATAGACTCAAACA+CGG - chr8.2:37037346-37037365 None:intergenic 35.0%
TAGCCTAATCATTCTTTGGA+AGG - chr8.2:37039412-37039431 None:intergenic 35.0%
TCTTGTGTAGGTTTATTGAG+TGG + chr8.2:37037393-37037412 MS.gene65573:intron 35.0%
TGAGTTTGCCAGAAATACAT+TGG + chr8.2:37038554-37038573 MS.gene65573:intron 35.0%
TGTAGGTTTATTGAGTGGTT+AGG + chr8.2:37037398-37037417 MS.gene65573:intron 35.0%
TGTTTGAGTCTATACTTCAC+AGG + chr8.2:37037346-37037365 MS.gene65573:intron 35.0%
! ATCATTTGGCTTCCATTTGT+AGG + chr8.2:37037483-37037502 MS.gene65573:CDS 35.0%
! ATGTGCTGATATGAACTTCA+CGG - chr8.2:37038070-37038089 None:intergenic 35.0%
! ATTTTGCACAAGTACCTGTT+TGG + chr8.2:37038524-37038543 MS.gene65573:intron 35.0%
! CTGAAATTTTATTGCGTCTG+TGG - chr8.2:37038269-37038288 None:intergenic 35.0%
! CTTGGGATTATGTTGTTGTT+TGG + chr8.2:37037155-37037174 MS.gene65573:CDS 35.0%
! GTGTCTAATCCTCTCAATTT+TGG + chr8.2:37038677-37038696 MS.gene65573:intron 35.0%
! TCATTTGGCTTCCATTTGTA+GGG + chr8.2:37037484-37037503 MS.gene65573:CDS 35.0%
!! AAAAAGGGTATCCCTACAAA+TGG - chr8.2:37037498-37037517 None:intergenic 35.0%
AAATTGTCTACGGCTCTGTT+TGG - chr8.2:37039812-37039831 None:intergenic 40.0%
ACAAGTACCTGTTTGGTTGA+CGG + chr8.2:37038531-37038550 MS.gene65573:intron 40.0%
ATGGTGGTCCAATGTATTTC+TGG - chr8.2:37038565-37038584 None:intergenic 40.0%
CAACAAGACCGCCAATAATA+GGG - chr8.2:37037862-37037881 None:intergenic 40.0%
CAAGCTTTCCTCTCAACAAA+GGG - chr8.2:37037139-37037158 None:intergenic 40.0%
CAAGTAGAAGTGAATCACGT+CGG + chr8.2:37039058-37039077 MS.gene65573:CDS 40.0%
CAATATCACAGCAACCAAGA+TGG + chr8.2:37037703-37037722 MS.gene65573:CDS 40.0%
CTATGTTTGGCAAGACAAAC+TGG + chr8.2:37039429-37039448 MS.gene65573:intron 40.0%
CTGATTCCACTAGAAAGACA+CGG + chr8.2:37038908-37038927 MS.gene65573:CDS 40.0%
CTTTGATTAAGATCGGTGAG+AGG - chr8.2:37038883-37038902 None:intergenic 40.0%
CTTTGTTGAGAGGAAAGCTT+GGG + chr8.2:37037138-37037157 MS.gene65573:CDS 40.0%
GCATGATACACTTTCTCTTG+AGG - chr8.2:37038363-37038382 None:intergenic 40.0%
TCAACAAGACCGCCAATAAT+AGG - chr8.2:37037863-37037882 None:intergenic 40.0%
TGAGAAGGTGAAGTTGAAAG+AGG + chr8.2:37037445-37037464 MS.gene65573:CDS 40.0%
TTATCACAGAGAGGAATAGG+AGG + chr8.2:37038391-37038410 MS.gene65573:CDS 40.0%
TTCTTAGACCCTTTGTTGAG+AGG + chr8.2:37037128-37037147 MS.gene65573:CDS 40.0%
! ACATTGGACCACCATGATTT+TGG + chr8.2:37038570-37038589 MS.gene65573:intron 40.0%
! ACGAGGTTAAATTTTGTCCC+AGG + chr8.2:37039967-37039986 MS.gene65573:intron 40.0%
! AGAAGCAAGGTGTGTTTTCA+AGG + chr8.2:37039116-37039135 MS.gene65573:CDS 40.0%
! CTTTAGAAGTTGAGGACTGT+GGG + chr8.2:37038791-37038810 MS.gene65573:CDS 40.0%
! CTTTGGAAGGAAGTTACAAG+TGG - chr8.2:37039399-37039418 None:intergenic 40.0%
! TTGTGGTGGAAACATTGAGA+AGG + chr8.2:37037430-37037449 MS.gene65573:CDS 40.0%
!! AGGTGTGTTTTCAAGGTTGA+TGG + chr8.2:37039123-37039142 MS.gene65573:CDS 40.0%
!! ATCCTCTCAATTTTGGCAGA+TGG + chr8.2:37038684-37038703 MS.gene65573:intron 40.0%
!!! ATGGGTTTTGAGTACCTAGT+TGG - chr8.2:37037196-37037215 None:intergenic 40.0%
!!! ATGTTTTGACAGGACTCAGT+TGG + chr8.2:37037821-37037840 MS.gene65573:intron 40.0%
AAACTCACCGTCAACCAAAC+AGG - chr8.2:37038541-37038560 None:intergenic 45.0%
AATATCCTGCACAGTTGCCT+GGG - chr8.2:37039987-37040006 None:intergenic 45.0%
ACCAAGATGGCTTATCCATG+AGG + chr8.2:37037716-37037735 MS.gene65573:CDS 45.0%
ACCTCATGGATAAGCCATCT+TGG - chr8.2:37037720-37037739 None:intergenic 45.0%
CAAGAGGAATCAAGCATCCA+TGG - chr8.2:37038221-37038240 None:intergenic 45.0%
CCAAGCTTTCCTCTCAACAA+AGG - chr8.2:37037140-37037159 None:intergenic 45.0%
CCTTTGTTGAGAGGAAAGCT+TGG + chr8.2:37037137-37037156 MS.gene65573:CDS 45.0%
GATCTACAGTATCCATGCAG+AGG + chr8.2:37037677-37037696 MS.gene65573:intron 45.0%
GATTAAGATCGGTGAGAGGT+AGG - chr8.2:37038879-37038898 None:intergenic 45.0%
GTCCATCTGCCAAAATTGAG+AGG - chr8.2:37038689-37038708 None:intergenic 45.0%
GTGATATTGCTACCTCTGCA+TGG - chr8.2:37037692-37037711 None:intergenic 45.0%
TTCCACTAGAAAGACACGGA+TGG + chr8.2:37038912-37038931 MS.gene65573:CDS 45.0%
! TGGTTAGGTTGTTGCTGTTG+TGG + chr8.2:37037413-37037432 MS.gene65573:CDS 45.0%
! TTAGGTTGTTGCTGTTGTGG+TGG + chr8.2:37037416-37037435 MS.gene65573:CDS 45.0%
! TTGCGTCTGTGGCTTTTAAG+TGG - chr8.2:37038258-37038277 None:intergenic 45.0%
!! GCTTTAGAAGTTGAGGACTG+TGG + chr8.2:37038790-37038809 MS.gene65573:CDS 45.0%
!! GGTCAAGGCTTTAGAAGTTG+AGG + chr8.2:37038783-37038802 MS.gene65573:CDS 45.0%
!! TCGAGTGTCGATTGTGGAAA+TGG + chr8.2:37038306-37038325 MS.gene65573:CDS 45.0%
!! TGTAGTTCGAGTGTCGATTG+TGG + chr8.2:37038300-37038319 MS.gene65573:CDS 45.0%
!! AAATATTAAAAGATTATATT+AGG - chr8.2:37039029-37039048 None:intergenic 5.0%
ACTAGACACGACACGGAACA+TGG - chr8.2:37037321-37037340 None:intergenic 50.0%
AGCAAGAGCCTCACAAGTCT+TGG - chr8.2:37037537-37037556 None:intergenic 50.0%
ATCAGGACACGTCTAATCCG+AGG - chr8.2:37037263-37037282 None:intergenic 50.0%
ATCGGTGAGAGGTAGGTTTC+TGG - chr8.2:37038872-37038891 None:intergenic 50.0%
CACTAGAAAGACACGGATGG+AGG + chr8.2:37038915-37038934 MS.gene65573:CDS 50.0%
CTCCATCCGTGTCTTTCTAG+TGG - chr8.2:37038917-37038936 None:intergenic 50.0%
GAATATCCTGCACAGTTGCC+TGG - chr8.2:37039988-37040007 None:intergenic 50.0%
GGACAGAGTAGCGATTCTTG+AGG + chr8.2:37038705-37038724 MS.gene65573:CDS 50.0%
GTAGAAGTGAATCACGTCGG+CGG + chr8.2:37039061-37039080 MS.gene65573:CDS 50.0%
TTGTGCTGTGAGCAGAAGCA+AGG + chr8.2:37039103-37039122 MS.gene65573:CDS 50.0%
CACGGACACTAGACACGACA+CGG - chr8.2:37037328-37037347 None:intergenic 55.0%
TTTGTCCCAGGCAACTGTGC+AGG + chr8.2:37039979-37039998 MS.gene65573:intron 55.0%
! GGCGTAGCTATGTGCCGATA+TGG - chr8.2:37038118-37038137 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 37037112 37040018 37037112 ID=MS.gene65573
chr8.2 mRNA 37037112 37040018 37037112 ID=MS.gene65573.t1;Parent=MS.gene65573
chr8.2 exon 37037112 37037200 37037112 ID=MS.gene65573.t1.exon1;Parent=MS.gene65573.t1
chr8.2 CDS 37037112 37037200 37037112 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37037403 37037588 37037403 ID=MS.gene65573.t1.exon2;Parent=MS.gene65573.t1
chr8.2 CDS 37037403 37037588 37037403 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37037686 37037737 37037686 ID=MS.gene65573.t1.exon3;Parent=MS.gene65573.t1
chr8.2 CDS 37037686 37037737 37037686 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37037833 37037901 37037833 ID=MS.gene65573.t1.exon4;Parent=MS.gene65573.t1
chr8.2 CDS 37037833 37037901 37037833 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37038048 37038470 37038048 ID=MS.gene65573.t1.exon5;Parent=MS.gene65573.t1
chr8.2 CDS 37038048 37038470 37038048 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37038703 37038936 37038703 ID=MS.gene65573.t1.exon6;Parent=MS.gene65573.t1
chr8.2 CDS 37038703 37038936 37038703 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37039055 37039231 37039055 ID=MS.gene65573.t1.exon7;Parent=MS.gene65573.t1
chr8.2 CDS 37039055 37039231 37039055 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
chr8.2 exon 37039989 37040018 37039989 ID=MS.gene65573.t1.exon8;Parent=MS.gene65573.t1
chr8.2 CDS 37039989 37040018 37039989 ID=cds.MS.gene65573.t1;Parent=MS.gene65573.t1
Gene Sequence

>MS.gene65573

ATGGGCGTTGTTGAATTTCTTAGACCCTTTGTTGAGAGGAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGATCCAACTAGGTACTCAAAACCCATTTTGTTATTCATTTGCATGTAAATTGCTATGAAACATAGATACTCCTCGGATTAGACGTGTCCTGATGTCATTTTCTCAAGTTATTATTGTTGTCGACGTGTCCATGTTCCGTGTCGTGTCTAGTGTCCGTGTTTGAGTCTATACTTCACAGGTAAATTTTTTTGATCCAATTTTTCTCTTGTGTAGGTTTATTGAGTGGTTAGGTTGTTGCTGTTGTGGTGGAAACATTGAGAAGGTGAAGTTGAAAGAGGAAATTTGTGAAGAATATCATTTGGCTTCCATTTGTAGGGATACCCTTTTTCATCATCAAGTTAAAACCAAGACTTGTGAGGCTCTTGCTAAGCTTCCTTTTACAATGTCTCTTTACTCTAGGTCTTACTCTTTCTCTCTTTAATTGTTTGCATTGAATATCAATTTTCTATATTTAATCATTGAAAGGAAATTCTAAGGAAAAGTATTTGATCTACAGTATCCATGCAGAGGTAGCAATATCACAGCAACCAAGATGGCTTATCCATGAGGTAAATTAATTTTTGTGTGGAAATCAGCTTAATTAAGAACTTATATCATAAGTGTTTATCATATAATTGATTTTTAACTGTTAATGTTTTGACAGGACTCAGTTGGAACACAAGTTTTAATCCCTATTATTGGCGGTCTTGTTGAGCTTTTCACTGCTAAGCATGTAAGATACAAATTTTAATACTTATTGGCATTACCTTCTGTTCTAAAATGATTGTAAATTTTAAAATTAATCAAGTGTTTATCTTTCTCAGATCCCAGAAGAATGATTGTAAATTTTAAAATTAATCAAGTGTTTATCTTTCTCAGATCCCAGAAGATATAAATACCGTGAAGTTCATATCAGCACATTGTTGTATCTCTATAAAGCAAGAAGCCATATCGGCACATAGCTACGCCAACATGAACTTCAATTTTAGCATGGAAGGACACTTCAGTGAATCTAATCCTTCAACTGAGCACTTATCATTTGATTCAAACCATGGATGCTTGATTCCTCTTGAATATTTGAATCAACCACTTAAAAGCCACAGACGCAATAAAATTTCAGCGAAACATCGGTGTAGTTCGAGTGTCGATTGTGGAAATGGCGAAGAAAATAAAGAAAATATTGTAAAGGAGCCTCAAGAGAAAGTGTATCATGCTAAAAATCTTATCACAGAGAGGAATAGGAGGAACAGAATAAAACAAGGGCTTTTTATTCTAAGGTCTTTAGTCCCTAATATAACCAAGGTATATCTAAATTGTTTAACATTATAGCATGAATGTAATACTTTTCACTATTAATTTTGCACAAGTACCTGTTTGGTTGACGGTGAGTTTGCCAGAAATACATTGGACCACCATGATTTTGGTAAAAGTTATACTGTAAAGCTTCAAGAAAATTACGGTGTCTGCTTTATATCGTCAAATTGACTATTGATCTGAACATGCACTATGTGTCTAATCCTCTCAATTTTGGCAGATGGACAGAGTAGCGATTCTTGAGGATGCGATTGAATATATAATGGAATTGCAGAGGCAAGAGAAAGAATTTCAAGAAGAGGTCAAGGCTTTAGAAGTTGAGGACTGTGGGAAGAGCACACTACTACAAATAAGAGTGCAAAAAGACAAAGAACTTGCAGAAGGAACCAGAAACCTACCTCTCACCGATCTTAATCAAAGTTCGTCTGATTCCACTAGAAAGACACGGATGGAGGTACACAAAATGCGCATAATAACAGTTTCGTTGTTTTTTATTAAGTCATGGATCATGAAACTGAATTTTATTGCATCTTTTCTTGGAAACCTAATATAATCTTTTAATATTTTCGTAGTTGCAAGTAGAAGTGAATCACGTCGGCGGAAAAGATTTCATGATTAAATTGTGCTGTGAGCAGAAGCAAGGTGTGTTTTCAAGGTTGATGGAAGCAATAGATTCATTTGGACTGCATGTGTTAAGTGCAAACATAACAACATTTGATGGCAAAGTTCTGAACATTATTATGGTTGAGGTAAGGGTCTAAATCCTATTAGTTAAGTGCATAAATATACTATAAATAAGAATCACCATGAAAAATCATGAGCTAGTTTAGTTTGGTTTTATCTTGGTTCTAAAATCCCACACCAAATCATACTTTTTACATTCCAGATTGAGTATTTAAATTAGACAGGAAATCCACTTGTAACTTCCTTCCAAAGAATGATTAGGCTATGTTTGGCAAGACAAACTGGCTAGCTTGTAACAAATAGCTTATAGAATATGAGTTCGTATGATCAAAATAGTGCTATTTTCGTAACAGTCTTTCTTTAAGATCTTAAAGTGCTTTCTTTTCTCACGCTTATAACAATATTTGAGATGCCATTTCAAGTAGTATTTGAGCTTATAGCTTACATCGGATCATTTTTACCCTCACTATCTTAATAAAAAAAAATTAAATATTAATTAAAAATATTTTTAAGTCATTTTATATTTATCAGTTAGTTCAATGACTGATTTAATTAACCGAATACTTCAAATCGAATATATAGCTTATCCACTATCTACAATAATCTCATTCATTATCAACAAGCTTATCTTCTACTTTTTTACCAAACAGAGCCGTAGACAATTTTGAAAAACTAGAGATTTCATTCATGGAAACTAAATGTTATCTCCATATTTAAAGACTAGGTTGATCAAAACTATCTCCCTGTTTCATTGATTCTCTATCCCATCCGTAAGTTCATAAGATTCCCTTTCTATTGTAACGAGGTTAAATTTTGTCCCAGGCAACTGTGCAGGATATTCACCCGAAGTAA

Protein sequence

>MS.gene65573.t1

MGVVEFLRPFVERKAWDYVVVWKYGNDPTRFIEWLGCCCCGGNIEKVKLKEEICEEYHLASICRDTLFHHQVKTKTCEALAKLPFTMSLYSSIHAEVAISQQPRWLIHEDSVGTQVLIPIIGGLVELFTAKHIPEDINTVKFISAHCCISIKQEAISAHSYANMNFNFSMEGHFSESNPSTEHLSFDSNHGCLIPLEYLNQPLKSHRRNKISAKHRCSSSVDCGNGEENKENIVKEPQEKVYHAKNLITERNRRNRIKQGLFILRSLVPNITKMDRVAILEDAIEYIMELQRQEKEFQEEVKALEVEDCGKSTLLQIRVQKDKELAEGTRNLPLTDLNQSSSDSTRKTRMELQVEVNHVGGKDFMIKLCCEQKQGVFSRLMEAIDSFGLHVLSANITTFDGKVLNIIMVEATVQDIHPK