Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65811.t1 | XP_003598636.1 | 93.7 | 301 | 16 | 1 | 1 | 298 | 1 | 301 | 2.80E-151 | 544.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65811.t1 | Q6IP65 | 53.3 | 261 | 122 | 0 | 40 | 300 | 28 | 288 | 2.7e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65811.t1 | Q2HW81 | 93.7 | 301 | 16 | 1 | 1 | 298 | 1 | 301 | 2.0e-151 | 544.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65811.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65811.t1 | MTR_3g018640 | 93.688 | 301 | 16 | 1 | 1 | 298 | 1 | 301 | 0.0 | 564 |
| MS.gene65811.t1 | MTR_5g093460 | 61.258 | 302 | 111 | 3 | 5 | 302 | 134 | 433 | 1.68e-121 | 355 |
| MS.gene65811.t1 | MTR_5g093460 | 70.992 | 131 | 37 | 1 | 31 | 161 | 1 | 130 | 2.76e-55 | 185 |
| MS.gene65811.t1 | MTR_6g065170 | 59.355 | 310 | 123 | 1 | 1 | 307 | 1 | 310 | 2.07e-120 | 348 |
| MS.gene65811.t1 | MTR_8g106940 | 58.387 | 310 | 126 | 1 | 1 | 307 | 1 | 310 | 2.88e-120 | 348 |
| MS.gene65811.t1 | MTR_1g056470 | 61.811 | 254 | 96 | 1 | 1 | 254 | 1 | 253 | 5.66e-113 | 327 |
| MS.gene65811.t1 | MTR_3g053170 | 60.584 | 274 | 107 | 1 | 35 | 307 | 26 | 299 | 3.65e-109 | 319 |
| MS.gene65811.t1 | MTR_1g043540 | 60.169 | 118 | 46 | 1 | 139 | 256 | 9 | 125 | 1.27e-36 | 128 |
| MS.gene65811.t1 | MTR_1g043500 | 48.438 | 64 | 32 | 1 | 192 | 254 | 2 | 65 | 1.95e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65811.t1 | AT3G20800 | 56.993 | 286 | 123 | 0 | 22 | 307 | 26 | 311 | 5.90e-109 | 319 |
| MS.gene65811.t1 | AT5G12980 | 53.455 | 275 | 127 | 1 | 28 | 301 | 28 | 302 | 2.62e-99 | 295 |
| MS.gene65811.t1 | AT2G32550 | 35.510 | 245 | 142 | 5 | 50 | 282 | 67 | 307 | 3.62e-36 | 132 |
| MS.gene65811.t1 | AT2G32550 | 35.897 | 234 | 134 | 5 | 61 | 282 | 39 | 268 | 6.53e-36 | 130 |
| MS.gene65811.t1 | AT2G32550 | 35.648 | 216 | 123 | 5 | 79 | 282 | 2 | 213 | 4.51e-31 | 116 |
Find 50 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3.2:-9133920 | MS.gene65811:CDS |
| CTCGCTTATCTCAAAATTGC+AGG | 0.298861 | 3.2:-9130997 | MS.gene65811:intron |
| AGAAATGAGATCCTTGTATC+AGG | 0.301701 | 3.2:+9132913 | None:intergenic |
| ATAGAAACCTATGACTTCTT+TGG | 0.317203 | 3.2:+9131360 | None:intergenic |
| AGGAATGGATATAAATATAA+AGG | 0.360461 | 3.2:+9132523 | None:intergenic |
| CAATGTTCTTGCACTACTTC+AGG | 0.367374 | 3.2:-9133143 | MS.gene65811:intron |
| GTTGCTAGTCTTGGAGTCAT+TGG | 0.372727 | 3.2:-9132460 | MS.gene65811:CDS |
| TTGGCATCTTTGAGCCTGTT+TGG | 0.379455 | 3.2:+9130845 | None:intergenic |
| CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3.2:+9133909 | None:intergenic |
| TATATTAGACGACGATGGTT+TGG | 0.405062 | 3.2:-9131140 | MS.gene65811:CDS |
| GTTAACACCAAAGAAGTCAT+AGG | 0.420089 | 3.2:-9131367 | MS.gene65811:CDS |
| TGTTGTTACATGAGAATGTT+GGG | 0.422120 | 3.2:-9130357 | MS.gene65811:CDS |
| TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3.2:-9133940 | MS.gene65811:intron |
| TAACAACTTATCTTCCAAAC+AGG | 0.438040 | 3.2:-9130859 | MS.gene65811:CDS |
| TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3.2:+9135121 | None:intergenic |
| GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3.2:+9133178 | None:intergenic |
| TAACACAGTTTGAGAATTTG+AGG | 0.440707 | 3.2:-9132483 | MS.gene65811:CDS |
| ATTCTAACACCACTGATCAT+AGG | 0.442748 | 3.2:-9135069 | MS.gene65811:CDS |
| AATTTGAGGGTTGCTAGTCT+TGG | 0.451958 | 3.2:-9132469 | MS.gene65811:CDS |
| CACCCTCACTTCGTTTGTTG+AGG | 0.453792 | 3.2:-9131039 | MS.gene65811:CDS |
| TGTTATTGAACTCAGCAATC+CGG | 0.481393 | 3.2:-9135026 | MS.gene65811:CDS |
| ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3.2:-9133933 | MS.gene65811:CDS |
| AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3.2:+9133193 | None:intergenic |
| AACCGAGTTCCTTTAGAAGC+AGG | 0.491153 | 3.2:-9130331 | MS.gene65811:CDS |
| GCTAGTCTTGGAGTCATTGG+TGG | 0.491588 | 3.2:-9132457 | MS.gene65811:CDS |
| CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3.2:-9133909 | MS.gene65811:CDS |
| CATCCTCTACCTGCTTCTAA+AGG | 0.500981 | 3.2:+9130322 | None:intergenic |
| GTTCCTTTAGAAGCAGGTAG+AGG | 0.520910 | 3.2:-9130325 | MS.gene65811:CDS |
| TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3.2:+9133932 | None:intergenic |
| TGGCATCTCACCCTGATACA+AGG | 0.537570 | 3.2:-9132924 | MS.gene65811:CDS |
| AACACAGTTTGAGAATTTGA+GGG | 0.539961 | 3.2:-9132482 | MS.gene65811:CDS |
| CTGTTGTTACATGAGAATGT+TGG | 0.540471 | 3.2:-9130358 | MS.gene65811:CDS |
| AGTCATTGGTGGCTCGATGA+AGG | 0.546457 | 3.2:-9132446 | MS.gene65811:intron |
| TGTTTGTCTAATATGCAAAA+CGG | 0.565201 | 3.2:-9131313 | MS.gene65811:CDS |
| ACAAGGATCTCATTTCTCAA+TGG | 0.566776 | 3.2:-9132907 | MS.gene65811:intron |
| AAGCCTCAACAAACGAAGTG+AGG | 0.580281 | 3.2:+9131036 | None:intergenic |
| TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3.2:-9134990 | MS.gene65811:intron |
| GAAATGAGATCCTTGTATCA+GGG | 0.596244 | 3.2:+9132914 | None:intergenic |
| AGCCTCAACAAACGAAGTGA+GGG | 0.600380 | 3.2:+9131037 | None:intergenic |
| CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3.2:+9133166 | None:intergenic |
| TAACACCACTGATCATAGGA+TGG | 0.625981 | 3.2:-9135065 | MS.gene65811:CDS |
| AAAATTATATTAGACGACGA+TGG | 0.627877 | 3.2:-9131145 | MS.gene65811:CDS |
| CTCAACAAACGAAGTGAGGG+TGG | 0.630278 | 3.2:+9131040 | None:intergenic |
| TACCTGCTTCTAAAGGAACT+CGG | 0.631809 | 3.2:+9130329 | None:intergenic |
| GATTGCTGAGTTCAATAACA+AGG | 0.649486 | 3.2:+9135029 | None:intergenic |
| GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3.2:+9133165 | None:intergenic |
| GTAAGCCATCCTATGATCAG+TGG | 0.669763 | 3.2:+9135060 | None:intergenic |
| TCAGTGGTGTTAGAATCACC+AGG | 0.685443 | 3.2:+9135076 | None:intergenic |
| TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3.2:+9133181 | None:intergenic |
| GTTGTTACATGAGAATGTTG+GGG | 0.746517 | 3.2:-9130356 | MS.gene65811:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACTCTATAATAATAAAT+TGG | + | chr3.2:9134216-9134235 | None:intergenic | 10.0% |
| !! | AGTTATAATAAATTAATTGT+CGG | - | chr3.2:9133737-9133756 | MS.gene65811:intron | 10.0% |
| !! | ATATTAAATTATATCATATC+AGG | + | chr3.2:9134711-9134730 | None:intergenic | 10.0% |
| !! | ATTAGTTAATAATAAATCAA+TGG | + | chr3.2:9134845-9134864 | None:intergenic | 10.0% |
| !! | ATTATATGAAAATTGATATT+AGG | - | chr3.2:9133889-9133908 | MS.gene65811:CDS | 10.0% |
| !! | GAAAAATAAAAACATAAATT+TGG | + | chr3.2:9131924-9131943 | None:intergenic | 10.0% |
| !!! | CATATATATTTTTTACATTA+AGG | + | chr3.2:9132466-9132485 | None:intergenic | 10.0% |
| !!! | GAATATTTTTTTTTTGTTTA+AGG | - | chr3.2:9132152-9132171 | MS.gene65811:intron | 10.0% |
| !!! | TAATTTTTTTTTGTAGTTTT+TGG | - | chr3.2:9133116-9133135 | MS.gene65811:intron | 10.0% |
| !!! | TACAATAATATCTAATTTTA+GGG | + | chr3.2:9133791-9133810 | None:intergenic | 10.0% |
| !!! | TTAAAAGATATATATTTTAG+CGG | - | chr3.2:9133645-9133664 | MS.gene65811:intron | 10.0% |
| !!! | TTTTTATAATTGAATTGAAA+GGG | - | chr3.2:9130676-9130695 | MS.gene65811:intron | 10.0% |
| !!! | TTTTTTATAATTGAATTGAA+AGG | - | chr3.2:9130675-9130694 | MS.gene65811:intron | 10.0% |
| !! | AAAATTGATATTAGGTATTT+GGG | - | chr3.2:9133897-9133916 | MS.gene65811:CDS | 15.0% |
| !! | AAACTACAAAAAAAAATTAC+TGG | + | chr3.2:9133115-9133134 | None:intergenic | 15.0% |
| !! | AACTACAAAAAAAAATTACT+GGG | + | chr3.2:9133114-9133133 | None:intergenic | 15.0% |
| !! | ATAGATTCATAATCTAAAAA+TGG | + | chr3.2:9131869-9131888 | None:intergenic | 15.0% |
| !! | GACAATTAATTTATTATAAC+TGG | + | chr3.2:9133738-9133757 | None:intergenic | 15.0% |
| !! | TTAAGATTAAAAGTTTAATC+AGG | + | chr3.2:9134559-9134578 | None:intergenic | 15.0% |
| !!! | AAACTTTTAATCTTAAAACA+GGG | - | chr3.2:9134563-9134582 | MS.gene65811:intron | 15.0% |
| !!! | ATATTTCTTTTTGTAGTTTT+TGG | + | chr3.2:9133315-9133334 | None:intergenic | 15.0% |
| !!! | CTACAATAATATCTAATTTT+AGG | + | chr3.2:9133792-9133811 | None:intergenic | 15.0% |
| !!! | GAACTTTTATACTAAAATTT+CGG | - | chr3.2:9131432-9131451 | MS.gene65811:intron | 15.0% |
| !!! | TAAACTTTTAATCTTAAAAC+AGG | - | chr3.2:9134562-9134581 | MS.gene65811:intron | 15.0% |
| !! | AAAAAACAAAGGCTAAAATA+TGG | + | chr3.2:9133383-9133402 | None:intergenic | 20.0% |
| !! | AGGAATGGATATAAATATAA+AGG | + | chr3.2:9132937-9132956 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAACTGTA+TGG | - | chr3.2:9133606-9133625 | MS.gene65811:intron | 20.0% |
| !! | GAAAATTGATATTAGGTATT+TGG | - | chr3.2:9133896-9133915 | MS.gene65811:CDS | 20.0% |
| !! | TAATTGTTTCGTTATTGAAA+GGG | - | chr3.2:9130870-9130889 | MS.gene65811:CDS | 20.0% |
| !! | TATGGAGATATATAACTATT+TGG | - | chr3.2:9132707-9132726 | MS.gene65811:intron | 20.0% |
| !! | TTCACACAATAAACTAATTA+AGG | - | chr3.2:9133551-9133570 | MS.gene65811:intron | 20.0% |
| !!! | AAATATATTTTCACATTGCA+AGG | + | chr3.2:9133472-9133491 | None:intergenic | 20.0% |
| !!! | AAATTTTTTCAATGGTATTC+CGG | + | chr3.2:9131051-9131070 | None:intergenic | 20.0% |
| !!! | AAGCTTCTAAATTTTTTCAA+TGG | + | chr3.2:9131059-9131078 | None:intergenic | 20.0% |
| !!! | AATCTTGATTTTACCATAAA+TGG | + | chr3.2:9131208-9131227 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTTTATAGTGTG+TGG | - | chr3.2:9132513-9132532 | MS.gene65811:CDS | 20.0% |
| !!! | AATTTAGTTTTTAAACCTCT+AGG | - | chr3.2:9132073-9132092 | MS.gene65811:intron | 20.0% |
| !!! | ATTACATATTATTTTCTAGC+TGG | - | chr3.2:9131613-9131632 | MS.gene65811:intron | 20.0% |
| !!! | ATTGATTTTCATGTATTTTG+GGG | + | chr3.2:9132403-9132422 | None:intergenic | 20.0% |
| !!! | ATTGTCGGTAAAAATTTTAA+CGG | - | chr3.2:9133752-9133771 | MS.gene65811:intron | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | - | chr3.2:9133288-9133307 | MS.gene65811:intron | 20.0% |
| !!! | CAATGTTAGTAAAAGTTTTA+AGG | + | chr3.2:9133709-9133728 | None:intergenic | 20.0% |
| !!! | CCATACAGTTTTTTTTTTTT+TGG | + | chr3.2:9133609-9133628 | None:intergenic | 20.0% |
| !!! | CTTAAAACTTTTACTAACAT+TGG | - | chr3.2:9133707-9133726 | MS.gene65811:intron | 20.0% |
| !!! | GATAGTGTGATTTTTTTTAA+TGG | - | chr3.2:9131138-9131157 | MS.gene65811:CDS | 20.0% |
| !!! | GATTGATTTTCATGTATTTT+GGG | + | chr3.2:9132404-9132423 | None:intergenic | 20.0% |
| !!! | TATTTTGTTTTTGGAAATAG+TGG | - | chr3.2:9133253-9133272 | MS.gene65811:intron | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | - | chr3.2:9133287-9133306 | MS.gene65811:intron | 20.0% |
| !!! | TCATTTTTAATGTCTTTCAT+GGG | - | chr3.2:9130519-9130538 | MS.gene65811:intron | 20.0% |
| !!! | TCTGCAAAATATTTTGTTTT+TGG | - | chr3.2:9133244-9133263 | MS.gene65811:intron | 20.0% |
| !!! | TGATTGATTTTCATGTATTT+TGG | + | chr3.2:9132405-9132424 | None:intergenic | 20.0% |
| !!! | TTACCATGTTTGTTTTATTT+TGG | - | chr3.2:9131410-9131429 | MS.gene65811:intron | 20.0% |
| !!! | TTCATTTTTAATGTCTTTCA+TGG | - | chr3.2:9130518-9130537 | MS.gene65811:intron | 20.0% |
| !!! | TTTTGTTTTTGGCTAAAATA+TGG | - | chr3.2:9133051-9133070 | MS.gene65811:intron | 20.0% |
| ! | AAAAACAAAAGTTAGAAGGA+TGG | + | chr3.2:9133041-9133060 | None:intergenic | 25.0% |
| ! | AAAATCACACTATCAAATGT+CGG | + | chr3.2:9131132-9131151 | None:intergenic | 25.0% |
| ! | AATTTGGAGAAAGATATACA+TGG | + | chr3.2:9131908-9131927 | None:intergenic | 25.0% |
| ! | ACGAAAAAAATTGATGAGAT+TGG | + | chr3.2:9134634-9134653 | None:intergenic | 25.0% |
| ! | ACTTAGAAAATATATGGTGA+TGG | - | chr3.2:9131961-9131980 | MS.gene65811:intron | 25.0% |
| ! | ATATTACAAGACATGCTATT+AGG | - | chr3.2:9134761-9134780 | MS.gene65811:intron | 25.0% |
| ! | ATATTTGATGAAACACACAA+TGG | - | chr3.2:9131777-9131796 | MS.gene65811:intron | 25.0% |
| ! | ATGAGAACAAAGATGTTATT+AGG | + | chr3.2:9130645-9130664 | None:intergenic | 25.0% |
| ! | ATTGAATTCTCTCTTTACAA+AGG | + | chr3.2:9135004-9135023 | None:intergenic | 25.0% |
| ! | CAAAACGAAATAAATAAGCA+CGG | + | chr3.2:9134051-9134070 | None:intergenic | 25.0% |
| ! | CTAATTGTTTCGTTATTGAA+AGG | - | chr3.2:9130869-9130888 | MS.gene65811:CDS | 25.0% |
| ! | CTAGATATTGTTTCAATTTC+AGG | - | chr3.2:9135050-9135069 | MS.gene65811:CDS | 25.0% |
| ! | CTTTCAATAACGAAACAATT+AGG | + | chr3.2:9130871-9130890 | None:intergenic | 25.0% |
| ! | GCTGCATATAATAACAAAAA+AGG | + | chr3.2:9132907-9132926 | None:intergenic | 25.0% |
| ! | GTTCCAAAATAAAACAAACA+TGG | + | chr3.2:9131416-9131435 | None:intergenic | 25.0% |
| ! | TAAGGATTCTCTAAACTTTA+TGG | - | chr3.2:9133569-9133588 | MS.gene65811:intron | 25.0% |
| ! | TATTACAAGACATGCTATTA+GGG | - | chr3.2:9134762-9134781 | MS.gene65811:intron | 25.0% |
| ! | TGTTTGTCTAATATGCAAAA+CGG | - | chr3.2:9134144-9134163 | MS.gene65811:intron | 25.0% |
| ! | TTATTCTGAATTACAATCCA+AGG | - | chr3.2:9132605-9132624 | MS.gene65811:intron | 25.0% |
| ! | TTCACAAGTAATACAAATCT+TGG | - | chr3.2:9130543-9130562 | MS.gene65811:intron | 25.0% |
| !! | ATCAATTTTTGTCGAAAACT+TGG | - | chr3.2:9131010-9131029 | MS.gene65811:CDS | 25.0% |
| !! | CATTTATGGTATTTTCAAAG+TGG | - | chr3.2:9134915-9134934 | MS.gene65811:intron | 25.0% |
| !! | CTTTACTTTGACTTTAAATG+AGG | + | chr3.2:9131090-9131109 | None:intergenic | 25.0% |
| !! | GTTCTTTTGTGAAAATACTA+TGG | - | chr3.2:9132689-9132708 | MS.gene65811:intron | 25.0% |
| !! | TATTTTTCCAACTTTTACGA+GGG | - | chr3.2:9131936-9131955 | MS.gene65811:intron | 25.0% |
| !! | TGCTTATTTATTTCGTTTTG+TGG | - | chr3.2:9134051-9134070 | MS.gene65811:intron | 25.0% |
| !!! | AAGTTTTAAGGACAGTTATA+AGG | + | chr3.2:9133697-9133716 | None:intergenic | 25.0% |
| !!! | ATCCTTCTAACTTTTGTTTT+TGG | - | chr3.2:9133040-9133059 | MS.gene65811:intron | 25.0% |
| !!! | CTTTCCCATTTTTAACATAA+TGG | + | chr3.2:9132842-9132861 | None:intergenic | 25.0% |
| !!! | CTTTTCAATTTTAATGCATC+TGG | - | chr3.2:9130987-9131006 | MS.gene65811:intron | 25.0% |
| !!! | GAAAAGTGTTTTGAATAAGA+GGG | - | chr3.2:9132767-9132786 | MS.gene65811:intron | 25.0% |
| !!! | TAAGTTTTGTGACACATTTA+TGG | - | chr3.2:9134901-9134920 | MS.gene65811:intron | 25.0% |
| !!! | TACTATTGCAGTATTTTTAC+AGG | - | chr3.2:9131571-9131590 | MS.gene65811:intron | 25.0% |
| !!! | TAGCTCAAGGATTTTTTTTA+GGG | - | chr3.2:9132030-9132049 | MS.gene65811:intron | 25.0% |
| !!! | TCTCTAGAATAATTTGTCTT+TGG | - | chr3.2:9130823-9130842 | MS.gene65811:intron | 25.0% |
| !!! | TGAAAAGTGTTTTGAATAAG+AGG | - | chr3.2:9132766-9132785 | MS.gene65811:intron | 25.0% |
| !!! | TTAACTTGCTTGTTGTTTTA+AGG | + | chr3.2:9132957-9132976 | None:intergenic | 25.0% |
| !!! | TTAGCTCAAGGATTTTTTTT+AGG | - | chr3.2:9132029-9132048 | MS.gene65811:intron | 25.0% |
| !!! | TTATTTTTCCAACTTTTACG+AGG | - | chr3.2:9131935-9131954 | MS.gene65811:intron | 25.0% |
| !!! | TTGATTTTCATGTATTTTGG+GGG | + | chr3.2:9132402-9132421 | None:intergenic | 25.0% |
| AACACAGTTTGAGAATTTGA+GGG | - | chr3.2:9132975-9132994 | MS.gene65811:intron | 30.0% | |
| ACAAGTAATACAAATCTTGG+AGG | - | chr3.2:9130546-9130565 | MS.gene65811:intron | 30.0% | |
| ACATGATGATTGAACCTATT+CGG | - | chr3.2:9133208-9133227 | MS.gene65811:CDS | 30.0% | |
| AGATAGATATGTAAGAACCT+TGG | + | chr3.2:9130487-9130506 | None:intergenic | 30.0% | |
| AGCCAAAAACAAAAGTTAGA+AGG | + | chr3.2:9133045-9133064 | None:intergenic | 30.0% | |
| AGGGAGACTTAGAAAATATA+TGG | - | chr3.2:9131955-9131974 | MS.gene65811:intron | 30.0% | |
| ATAGAAACCTATGACTTCTT+TGG | + | chr3.2:9134100-9134119 | None:intergenic | 30.0% | |
| ATGAAACACACAATGGTATT+GGG | - | chr3.2:9131784-9131803 | MS.gene65811:intron | 30.0% | |
| ATGAACTAATCCTAACAAGT+TGG | + | chr3.2:9133933-9133952 | None:intergenic | 30.0% | |
| ATGTTATTAGGTCTAGCAAA+AGG | + | chr3.2:9130633-9130652 | None:intergenic | 30.0% | |
| ATTATAAATGTTGCAACCTG+TGG | + | chr3.2:9134288-9134307 | None:intergenic | 30.0% | |
| ATTCATAAGAGTCACACTAA+TGG | + | chr3.2:9132136-9132155 | None:intergenic | 30.0% | |
| CAAAACAAGACATATTTGCA+GGG | - | chr3.2:9133350-9133369 | MS.gene65811:intron | 30.0% | |
| CAGGCCATTATGTTAAAAAT+GGG | - | chr3.2:9132835-9132854 | MS.gene65811:intron | 30.0% | |
| CCAACAGTATTCCATAATAA+AGG | + | chr3.2:9131551-9131570 | None:intergenic | 30.0% | |
| CCTTTATTATGGAATACTGT+TGG | - | chr3.2:9131548-9131567 | MS.gene65811:intron | 30.0% | |
| GATATACAACTTTCATTAGC+AGG | + | chr3.2:9134264-9134283 | None:intergenic | 30.0% | |
| GTATGATACACACATTCAAT+AGG | + | chr3.2:9134806-9134825 | None:intergenic | 30.0% | |
| TAACAACTTATCTTCCAAAC+AGG | - | chr3.2:9134598-9134617 | MS.gene65811:intron | 30.0% | |
| TAACACAGTTTGAGAATTTG+AGG | - | chr3.2:9132974-9132993 | MS.gene65811:intron | 30.0% | |
| TCAAAGTGGATACTAACTAT+AGG | - | chr3.2:9134929-9134948 | MS.gene65811:intron | 30.0% | |
| TCAGCTGCATTAAAAAACAA+AGG | + | chr3.2:9133394-9133413 | None:intergenic | 30.0% | |
| TGAAATGATGATTGTTCTGA+AGG | + | chr3.2:9131846-9131865 | None:intergenic | 30.0% | |
| TGAACTAATCCTAACAAGTT+GGG | + | chr3.2:9133932-9133951 | None:intergenic | 30.0% | |
| TGTCACAAAACTTACTAAAG+AGG | + | chr3.2:9134895-9134914 | None:intergenic | 30.0% | |
| TGTTATTAGGTCTAGCAAAA+GGG | + | chr3.2:9130632-9130651 | None:intergenic | 30.0% | |
| TGTTGTTACATGAGAATGTT+GGG | - | chr3.2:9135100-9135119 | MS.gene65811:CDS | 30.0% | |
| TTCACTGTTTAGTGTATCAT+GGG | - | chr3.2:9130893-9130912 | MS.gene65811:intron | 30.0% | |
| TTGAATAAGAGGGATGAATT+TGG | - | chr3.2:9132777-9132796 | MS.gene65811:intron | 30.0% | |
| TTGTGGTATTTGATATTCAC+AGG | - | chr3.2:9134068-9134087 | MS.gene65811:intron | 30.0% | |
| TTTGTCGAAAACTTGGTATT+CGG | - | chr3.2:9131017-9131036 | MS.gene65811:CDS | 30.0% | |
| ! | CAAATTATTCTAGAGAACCT+AGG | + | chr3.2:9130819-9130838 | None:intergenic | 30.0% |
| ! | CTAGAATAATTTGTCTTTGG+TGG | - | chr3.2:9130826-9130845 | MS.gene65811:CDS | 30.0% |
| !! | AGACTATTTTTCTACCGAAT+AGG | + | chr3.2:9133225-9133244 | None:intergenic | 30.0% |
| !!! | AATATGTCTCGTTTTGGTTT+TGG | - | chr3.2:9133147-9133166 | MS.gene65811:CDS | 30.0% |
| !!! | GCTACAACAGAGAATTTTTT+TGG | - | chr3.2:9134351-9134370 | MS.gene65811:intron | 30.0% |
| !!! | GTTGTGCTGTTTTTTTTTTC+AGG | - | chr3.2:9132224-9132243 | MS.gene65811:intron | 30.0% |
| !!! | TTGCTTGTTGTTTTAAGGAA+TGG | + | chr3.2:9132952-9132971 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGGAAATAGTGGA+GGG | - | chr3.2:9133257-9133276 | MS.gene65811:intron | 30.0% |
| !!! | TTTGTTTTTGGAAATAGTGG+AGG | - | chr3.2:9133256-9133275 | MS.gene65811:intron | 30.0% |
| AAAACTTGGTATTCGGTCAT+AGG | - | chr3.2:9131024-9131043 | MS.gene65811:CDS | 35.0% | |
| AAGTTATTGCAACCAAAAGC+TGG | + | chr3.2:9132814-9132833 | None:intergenic | 35.0% | |
| AATCAAGATTACTATCGCAC+AGG | - | chr3.2:9131218-9131237 | MS.gene65811:intron | 35.0% | |
| ACAAAACGAGGCATATTTAC+AGG | + | chr3.2:9133085-9133104 | None:intergenic | 35.0% | |
| ACAAGGATCTCATTTCTCAA+TGG | - | chr3.2:9132550-9132569 | MS.gene65811:intron | 35.0% | |
| ACCAAGTTATTTGAGGAACT+TGG | - | chr3.2:9131524-9131543 | MS.gene65811:intron | 35.0% | |
| AGAAATGAGATCCTTGTATC+AGG | + | chr3.2:9132547-9132566 | None:intergenic | 35.0% | |
| AGAACCTAGGTTCAATTTCT+GGG | + | chr3.2:9130806-9130825 | None:intergenic | 35.0% | |
| AGGAACTTGGACCTTTATTA+TGG | - | chr3.2:9131537-9131556 | MS.gene65811:intron | 35.0% | |
| AGGACAGTTATAAGGAATGT+TGG | + | chr3.2:9133689-9133708 | None:intergenic | 35.0% | |
| AGGATGATCCAAAAACTATG+AGG | - | chr3.2:9135070-9135089 | MS.gene65811:CDS | 35.0% | |
| ATTCTAACACCACTGATCAT+AGG | - | chr3.2:9130388-9130407 | MS.gene65811:CDS | 35.0% | |
| CAAAACGAGACATATTTGCA+GGG | + | chr3.2:9133143-9133162 | None:intergenic | 35.0% | |
| CAAAACGAGGCATATTTACA+GGG | + | chr3.2:9133084-9133103 | None:intergenic | 35.0% | |
| CAACTTTCATTAGCAGGTAT+TGG | + | chr3.2:9134258-9134277 | None:intergenic | 35.0% | |
| CCAAAACAAGACATATTTGC+AGG | - | chr3.2:9133349-9133368 | MS.gene65811:intron | 35.0% | |
| CTAGCAAAAGGGTTTAATGT+TGG | + | chr3.2:9130621-9130640 | None:intergenic | 35.0% | |
| CTGTTGTTACATGAGAATGT+TGG | - | chr3.2:9135099-9135118 | MS.gene65811:CDS | 35.0% | |
| CTTATCTCAAAATTGCAGGT+TGG | - | chr3.2:9134464-9134483 | MS.gene65811:intron | 35.0% | |
| GAAATGAGATCCTTGTATCA+GGG | + | chr3.2:9132546-9132565 | None:intergenic | 35.0% | |
| GAAGGATTGTAATACGACAA+AGG | + | chr3.2:9131828-9131847 | None:intergenic | 35.0% | |
| GACGACATCTAATCCATTTA+TGG | - | chr3.2:9131192-9131211 | MS.gene65811:intron | 35.0% | |
| GATGAAACACACAATGGTAT+TGG | - | chr3.2:9131783-9131802 | MS.gene65811:intron | 35.0% | |
| GATTGCTGAGTTCAATAACA+AGG | + | chr3.2:9130431-9130450 | None:intergenic | 35.0% | |
| GCAGGCCATTATGTTAAAAA+TGG | - | chr3.2:9132834-9132853 | MS.gene65811:intron | 35.0% | |
| GGAAATGAGACCTGATAATT+TGG | - | chr3.2:9130736-9130755 | MS.gene65811:intron | 35.0% | |
| GTGCAAATCATCACAAAAGT+GGG | + | chr3.2:9133181-9133200 | None:intergenic | 35.0% | |
| GTTAACACCAAAGAAGTCAT+AGG | - | chr3.2:9134090-9134109 | MS.gene65811:intron | 35.0% | |
| GTTCACTGTTTAGTGTATCA+TGG | - | chr3.2:9130892-9130911 | MS.gene65811:intron | 35.0% | |
| GTTGTTACATGAGAATGTTG+GGG | - | chr3.2:9135101-9135120 | MS.gene65811:CDS | 35.0% | |
| TAGTTCATCTACATCACGAA+GGG | - | chr3.2:9133945-9133964 | MS.gene65811:intron | 35.0% | |
| TCCAAGTTCCTCAAATAACT+TGG | + | chr3.2:9131528-9131547 | None:intergenic | 35.0% | |
| TCTGGTAGGTCAATAAAATC+TGG | - | chr3.2:9130765-9130784 | MS.gene65811:intron | 35.0% | |
| TGAAAGTTGTATATCTCCAC+AGG | - | chr3.2:9134269-9134288 | MS.gene65811:intron | 35.0% | |
| TGATCCAAAAACTATGAGGT+TGG | - | chr3.2:9135074-9135093 | MS.gene65811:CDS | 35.0% | |
| TGGAGAAAGATATACATGGT+AGG | + | chr3.2:9131904-9131923 | None:intergenic | 35.0% | |
| TGTGCAAATCATCACAAAAG+TGG | + | chr3.2:9133182-9133201 | None:intergenic | 35.0% | |
| TGTTATTGAACTCAGCAATC+CGG | - | chr3.2:9130431-9130450 | MS.gene65811:intron | 35.0% | |
| TGTTTACGCTTCACTTCTTA+GGG | - | chr3.2:9130714-9130733 | MS.gene65811:intron | 35.0% | |
| TTAGTTCATCTACATCACGA+AGG | - | chr3.2:9133944-9133963 | MS.gene65811:intron | 35.0% | |
| TTGTGCATGTATCTTACTTG+TGG | - | chr3.2:9131736-9131755 | MS.gene65811:intron | 35.0% | |
| TTTCAAGAGATGTTAGCTCA+AGG | - | chr3.2:9132017-9132036 | MS.gene65811:intron | 35.0% | |
| ! | AAAGGGTTTAATGTTGGTAG+AGG | + | chr3.2:9130615-9130634 | None:intergenic | 35.0% |
| ! | ACTTACAAACCCAACTTGTT+AGG | - | chr3.2:9133920-9133939 | MS.gene65811:CDS | 35.0% |
| ! | AGTACCAACCTCATAGTTTT+TGG | + | chr3.2:9135081-9135100 | None:intergenic | 35.0% |
| !! | CAACTTGTTACATACAACCT+TGG | + | chr3.2:9132625-9132644 | None:intergenic | 35.0% |
| !! | GCAGGTATTGGTAACAAAAA+TGG | + | chr3.2:9134246-9134265 | None:intergenic | 35.0% |
| !! | GGTCATTTTACAGTTGTTTG+AGG | + | chr3.2:9132115-9132134 | None:intergenic | 35.0% |
| !! | TTTTGGTTGCAATAACTTGC+AGG | - | chr3.2:9132816-9132835 | MS.gene65811:intron | 35.0% |
| !!! | AGAGCATTTTCTCTAAGATC+CGG | + | chr3.2:9130453-9130472 | None:intergenic | 35.0% |
| !!! | CCTGCAAATATGTCTTGTTT+TGG | + | chr3.2:9133352-9133371 | None:intergenic | 35.0% |
| !!! | TCGAGTTTTGAACATGATGT+TGG | - | chr3.2:9134380-9134399 | MS.gene65811:intron | 35.0% |
| ACTGGGACTAAAACAAAACG+AGG | + | chr3.2:9133097-9133116 | None:intergenic | 40.0% | |
| ATCACACTATCAAATGTCGG+TGG | + | chr3.2:9131129-9131148 | None:intergenic | 40.0% | |
| CAATGTTCTTGCACTACTTC+AGG | - | chr3.2:9132314-9132333 | MS.gene65811:intron | 40.0% | |
| CAGACGAACTCCAAATTATC+AGG | + | chr3.2:9130749-9130768 | None:intergenic | 40.0% | |
| CCAAAACGAGACATATTTGC+AGG | + | chr3.2:9133144-9133163 | None:intergenic | 40.0% | |
| CTCGCTTATCTCAAAATTGC+AGG | - | chr3.2:9134460-9134479 | MS.gene65811:intron | 40.0% | |
| GAGAACCTAGGTTCAATTTC+TGG | + | chr3.2:9130807-9130826 | None:intergenic | 40.0% | |
| GATTTGAACGTCTTTCCTAG+AGG | + | chr3.2:9132091-9132110 | None:intergenic | 40.0% | |
| GTGTTTACGCTTCACTTCTT+AGG | - | chr3.2:9130713-9130732 | MS.gene65811:intron | 40.0% | |
| GTTTACGCTTCACTTCTTAG+GGG | - | chr3.2:9130715-9130734 | MS.gene65811:intron | 40.0% | |
| TAACACCACTGATCATAGGA+TGG | - | chr3.2:9130392-9130411 | MS.gene65811:intron | 40.0% | |
| TAAGTCTCCCTCGTAAAAGT+TGG | + | chr3.2:9131946-9131965 | None:intergenic | 40.0% | |
| TACAAGACATGCTATTAGGG+TGG | - | chr3.2:9134765-9134784 | MS.gene65811:intron | 40.0% | |
| TTCTTTGTTGAGAGCGATTG+AGG | + | chr3.2:9130339-9130358 | None:intergenic | 40.0% | |
| ! | AATTTGAGGGTTGCTAGTCT+TGG | - | chr3.2:9132988-9133007 | MS.gene65811:intron | 40.0% |
| ! | ACGAAACAATTAGGCTCTAG+TGG | + | chr3.2:9130862-9130881 | None:intergenic | 40.0% |
| ! | ATGCTATTAGGGTGGCTTTT+AGG | - | chr3.2:9134773-9134792 | MS.gene65811:intron | 40.0% |
| ! | CCTGCAAATATGTCTCGTTT+TGG | - | chr3.2:9133141-9133160 | MS.gene65811:intron | 40.0% |
| ! | CTGATAATTTGGAGTTCGTC+TGG | - | chr3.2:9130747-9130766 | MS.gene65811:intron | 40.0% |
| ! | GATTCTCTATGACCAGCTTT+TGG | - | chr3.2:9132799-9132818 | MS.gene65811:intron | 40.0% |
| ! | GCATCGTTTATAGCTTTTCC+TGG | - | chr3.2:9130363-9130382 | MS.gene65811:CDS | 40.0% |
| ! | TAATTTGGAGTTCGTCTGGT+AGG | - | chr3.2:9130751-9130770 | MS.gene65811:intron | 40.0% |
| ! | TACCTGCTTCTAAAGGAACT+CGG | + | chr3.2:9135131-9135150 | None:intergenic | 40.0% |
| ! | TCAGAGCACCAAGTTATTTG+AGG | - | chr3.2:9131517-9131536 | MS.gene65811:intron | 40.0% |
| ! | TTTGTGATGATTTGCACACG+TGG | - | chr3.2:9133184-9133203 | MS.gene65811:CDS | 40.0% |
| !! | TCTCAAAATTGCAGGTTGGT+TGG | - | chr3.2:9134468-9134487 | MS.gene65811:intron | 40.0% |
| AAGCCTCAACAAACGAAGTG+AGG | + | chr3.2:9134424-9134443 | None:intergenic | 45.0% | |
| AGCCTCAACAAACGAAGTGA+GGG | + | chr3.2:9134423-9134442 | None:intergenic | 45.0% | |
| CATCCTCTACCTGCTTCTAA+AGG | + | chr3.2:9135138-9135157 | None:intergenic | 45.0% | |
| GATTGTGAGGGAGAGAGATT+CGG | + | chr3.2:9132282-9132301 | None:intergenic | 45.0% | |
| GTAAGCCATCCTATGATCAG+TGG | + | chr3.2:9130400-9130419 | None:intergenic | 45.0% | |
| TCATCACAAAAGTGGGACCA+AGG | + | chr3.2:9133174-9133193 | None:intergenic | 45.0% | |
| TCCACCCAGAAATTGAACCT+AGG | - | chr3.2:9130799-9130818 | MS.gene65811:intron | 45.0% | |
| TTGGCATCTTTGAGCCTGTT+TGG | + | chr3.2:9134615-9134634 | None:intergenic | 45.0% | |
| TTGGTATTCGGTCATAGGAC+CGG | - | chr3.2:9131029-9131048 | MS.gene65811:CDS | 45.0% | |
| ! | AACCGAGTTCCTTTAGAAGC+AGG | - | chr3.2:9135126-9135145 | MS.gene65811:CDS | 45.0% |
| ! | ACCTAGGTTCAATTTCTGGG+TGG | + | chr3.2:9130803-9130822 | None:intergenic | 45.0% |
| ! | GTTCCTTTAGAAGCAGGTAG+AGG | - | chr3.2:9135132-9135151 | MS.gene65811:CDS | 45.0% |
| ! | TCAGTGGTGTTAGAATCACC+AGG | + | chr3.2:9130384-9130403 | None:intergenic | 45.0% |
| !! | AGATTCGGTGGTGAAAGAGT+AGG | + | chr3.2:9132267-9132286 | None:intergenic | 45.0% |
| !! | CACACTCGAGTTGATTGTGA+GGG | + | chr3.2:9132294-9132313 | None:intergenic | 45.0% |
| !! | GTTGCTAGTCTTGGAGTCAT+TGG | - | chr3.2:9132997-9133016 | MS.gene65811:intron | 45.0% |
| !!! | CTCGTTTTGGTTTTGGTCCT+TGG | - | chr3.2:9133154-9133173 | MS.gene65811:CDS | 45.0% |
| CTCAACAAACGAAGTGAGGG+TGG | + | chr3.2:9134420-9134439 | None:intergenic | 50.0% | |
| TGCTCTCTATGTGCTCTCCA+AGG | - | chr3.2:9130467-9130486 | MS.gene65811:intron | 50.0% | |
| TGGCATCTCACCCTGATACA+AGG | - | chr3.2:9132533-9132552 | MS.gene65811:CDS | 50.0% | |
| ! | AGTCATTGGTGGCTCGATGA+AGG | - | chr3.2:9133011-9133030 | MS.gene65811:intron | 50.0% |
| ! | CACCCTCACTTCGTTTGTTG+AGG | - | chr3.2:9134418-9134437 | MS.gene65811:intron | 50.0% |
| !! | GCACACTCGAGTTGATTGTG+AGG | + | chr3.2:9132295-9132314 | None:intergenic | 50.0% |
| !! | GCTAGTCTTGGAGTCATTGG+TGG | - | chr3.2:9133000-9133019 | MS.gene65811:intron | 50.0% |
| TGTGAGGGAGAGAGATTCGG+TGG | + | chr3.2:9132279-9132298 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9130321 | 9135158 | 9130321 | ID=MS.gene65811 |
| chr3.2 | mRNA | 9130321 | 9135158 | 9130321 | ID=MS.gene65811.t1;Parent=MS.gene65811 |
| chr3.2 | exon | 9134991 | 9135158 | 9134991 | ID=MS.gene65811.t1.exon1;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9134991 | 9135158 | 9134991 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9133887 | 9133958 | 9133887 | ID=MS.gene65811.t1.exon2;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9133887 | 9133958 | 9133887 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9133144 | 9133233 | 9133144 | ID=MS.gene65811.t1.exon3;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9133144 | 9133233 | 9133144 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9132908 | 9132950 | 9132908 | ID=MS.gene65811.t1.exon4;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9132908 | 9132950 | 9132908 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9132447 | 9132553 | 9132447 | ID=MS.gene65811.t1.exon5;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9132447 | 9132553 | 9132447 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9131294 | 9131389 | 9131294 | ID=MS.gene65811.t1.exon6;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9131294 | 9131389 | 9131294 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9130998 | 9131188 | 9130998 | ID=MS.gene65811.t1.exon7;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9130998 | 9131188 | 9130998 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9130826 | 9130895 | 9130826 | ID=MS.gene65811.t1.exon8;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9130826 | 9130895 | 9130826 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| chr3.2 | exon | 9130321 | 9130407 | 9130321 | ID=MS.gene65811.t1.exon9;Parent=MS.gene65811.t1 |
| chr3.2 | CDS | 9130321 | 9130407 | 9130321 | ID=cds.MS.gene65811.t1;Parent=MS.gene65811.t1 |
| Gene Sequence |
| Protein sequence |
