Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65910.t1 | XP_003622663.1 | 81.6 | 305 | 53 | 3 | 1 | 304 | 1 | 303 | 5.00E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65910.t1 | Q8L3W1 | 27.5 | 338 | 179 | 7 | 13 | 291 | 6 | 336 | 8.3e-27 | 122.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65910.t1 | G7KVV4 | 81.6 | 305 | 53 | 3 | 1 | 304 | 1 | 303 | 3.6e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65910.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65910.t1 | MTR_7g050560 | 81.639 | 305 | 53 | 3 | 1 | 304 | 1 | 303 | 0.0 | 516 |
| MS.gene65910.t1 | MTR_7g050590 | 71.769 | 294 | 65 | 4 | 28 | 304 | 1 | 293 | 2.37e-154 | 433 |
| MS.gene65910.t1 | MTR_7g050580 | 67.712 | 319 | 72 | 4 | 1 | 304 | 1 | 303 | 2.43e-148 | 419 |
| MS.gene65910.t1 | MTR_3g098790 | 64.890 | 319 | 90 | 3 | 1 | 304 | 1 | 312 | 3.46e-147 | 416 |
| MS.gene65910.t1 | MTR_7g050710 | 64.486 | 321 | 96 | 3 | 1 | 304 | 1 | 320 | 4.25e-146 | 414 |
| MS.gene65910.t1 | MTR_7g050720 | 57.911 | 316 | 106 | 6 | 5 | 293 | 2 | 317 | 5.73e-122 | 352 |
| MS.gene65910.t1 | MTR_8g103940 | 37.134 | 307 | 155 | 10 | 11 | 291 | 37 | 331 | 2.29e-52 | 179 |
| MS.gene65910.t1 | MTR_1g035460 | 35.906 | 298 | 146 | 7 | 28 | 291 | 1 | 287 | 5.19e-51 | 173 |
| MS.gene65910.t1 | MTR_1g108780 | 34.364 | 291 | 150 | 9 | 29 | 291 | 13 | 290 | 5.49e-47 | 164 |
| MS.gene65910.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 2.26e-45 | 150 |
| MS.gene65910.t1 | MTR_3g061320 | 35.099 | 302 | 158 | 9 | 3 | 290 | 2 | 279 | 3.22e-43 | 149 |
| MS.gene65910.t1 | MTR_3g061370 | 34.828 | 290 | 164 | 11 | 11 | 290 | 7 | 281 | 1.47e-40 | 142 |
| MS.gene65910.t1 | MTR_3g061350 | 34.114 | 299 | 173 | 11 | 1 | 290 | 1 | 284 | 2.32e-40 | 142 |
| MS.gene65910.t1 | MTR_5g044670 | 30.164 | 305 | 184 | 9 | 13 | 298 | 16 | 310 | 7.35e-40 | 142 |
| MS.gene65910.t1 | MTR_3g061340 | 33.904 | 292 | 156 | 10 | 10 | 290 | 9 | 274 | 4.40e-39 | 139 |
| MS.gene65910.t1 | MTR_3g061310 | 32.313 | 294 | 177 | 9 | 6 | 290 | 5 | 285 | 3.95e-38 | 136 |
| MS.gene65910.t1 | MTR_3g061330 | 53.153 | 111 | 49 | 2 | 1 | 111 | 1 | 108 | 3.02e-33 | 122 |
| MS.gene65910.t1 | MTR_6g043890 | 31.507 | 292 | 162 | 10 | 11 | 277 | 13 | 291 | 1.95e-32 | 123 |
| MS.gene65910.t1 | MTR_1g035570 | 31.560 | 282 | 173 | 6 | 22 | 291 | 14 | 287 | 3.66e-32 | 123 |
| MS.gene65910.t1 | MTR_4g119990 | 29.758 | 289 | 177 | 7 | 11 | 277 | 13 | 297 | 1.51e-30 | 118 |
| MS.gene65910.t1 | MTR_3g061290 | 53.922 | 102 | 45 | 1 | 10 | 111 | 9 | 108 | 2.41e-30 | 114 |
| MS.gene65910.t1 | MTR_1g035620 | 28.571 | 280 | 192 | 6 | 10 | 289 | 6 | 277 | 2.31e-29 | 115 |
| MS.gene65910.t1 | MTR_3g005490 | 26.502 | 283 | 166 | 7 | 13 | 294 | 21 | 262 | 5.09e-29 | 112 |
| MS.gene65910.t1 | MTR_1g035640 | 29.592 | 294 | 182 | 8 | 13 | 297 | 9 | 286 | 2.20e-28 | 114 |
| MS.gene65910.t1 | MTR_3g005480 | 27.835 | 291 | 153 | 8 | 13 | 294 | 21 | 263 | 4.48e-28 | 109 |
| MS.gene65910.t1 | MTR_1g050845 | 29.268 | 287 | 169 | 5 | 10 | 289 | 6 | 265 | 1.96e-27 | 112 |
| MS.gene65910.t1 | MTR_3g005420 | 27.817 | 284 | 170 | 7 | 13 | 294 | 289 | 539 | 1.80e-26 | 109 |
| MS.gene65910.t1 | MTR_3g005420 | 24.275 | 276 | 137 | 9 | 13 | 278 | 40 | 253 | 1.98e-15 | 77.0 |
| MS.gene65910.t1 | MTR_5g070440 | 26.761 | 284 | 173 | 7 | 13 | 294 | 21 | 271 | 3.85e-26 | 104 |
| MS.gene65910.t1 | MTR_3g061220 | 46.226 | 106 | 42 | 2 | 6 | 111 | 5 | 95 | 1.01e-24 | 96.7 |
| MS.gene65910.t1 | MTR_1g021360 | 29.044 | 272 | 169 | 6 | 24 | 278 | 193 | 457 | 1.37e-24 | 103 |
| MS.gene65910.t1 | MTR_1g021360 | 35.870 | 92 | 58 | 1 | 11 | 102 | 24 | 114 | 2.52e-11 | 64.3 |
| MS.gene65910.t1 | MTR_1g021410 | 26.140 | 329 | 182 | 9 | 14 | 290 | 23 | 342 | 1.22e-23 | 99.4 |
| MS.gene65910.t1 | MTR_3g005495 | 30.451 | 266 | 138 | 9 | 13 | 278 | 243 | 461 | 6.27e-23 | 98.6 |
| MS.gene65910.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 29 | 114 | 29 | 114 | 3.68e-17 | 82.0 |
| MS.gene65910.t1 | MTR_6g061070 | 26.316 | 323 | 186 | 12 | 7 | 290 | 12 | 321 | 3.30e-22 | 96.7 |
| MS.gene65910.t1 | MTR_1g021435 | 24.854 | 342 | 195 | 7 | 6 | 289 | 15 | 352 | 7.03e-22 | 94.7 |
| MS.gene65910.t1 | MTR_3g005460 | 25.763 | 295 | 174 | 9 | 11 | 294 | 260 | 520 | 2.05e-21 | 94.4 |
| MS.gene65910.t1 | MTR_3g005460 | 36.275 | 102 | 65 | 0 | 13 | 114 | 25 | 126 | 6.02e-19 | 87.4 |
| MS.gene65910.t1 | MTR_1g021400 | 25.595 | 336 | 198 | 10 | 11 | 297 | 28 | 360 | 2.53e-21 | 93.2 |
| MS.gene65910.t1 | MTR_4g068320 | 32.121 | 165 | 108 | 2 | 13 | 173 | 6 | 170 | 2.61e-21 | 93.6 |
| MS.gene65910.t1 | MTR_4g068320 | 30.827 | 133 | 86 | 2 | 164 | 296 | 267 | 393 | 6.61e-13 | 68.9 |
| MS.gene65910.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 3.82e-20 | 90.5 |
| MS.gene65910.t1 | MTR_1g034240 | 29.008 | 131 | 87 | 2 | 167 | 297 | 274 | 398 | 1.98e-12 | 67.8 |
| MS.gene65910.t1 | MTR_1g021380 | 25.000 | 324 | 187 | 8 | 16 | 292 | 20 | 334 | 1.59e-19 | 87.8 |
| MS.gene65910.t1 | MTR_1g035650 | 30.612 | 196 | 112 | 3 | 10 | 185 | 6 | 197 | 3.07e-19 | 84.3 |
| MS.gene65910.t1 | MTR_1g035480 | 35.714 | 140 | 79 | 3 | 9 | 148 | 13 | 141 | 2.63e-18 | 81.3 |
| MS.gene65910.t1 | MTR_1g021330 | 24.528 | 318 | 176 | 7 | 26 | 283 | 39 | 352 | 2.66e-18 | 84.7 |
| MS.gene65910.t1 | MTR_1g035440 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 1.07e-17 | 81.3 |
| MS.gene65910.t1 | MTR_1g033740 | 30.409 | 171 | 105 | 4 | 9 | 177 | 18 | 176 | 1.08e-16 | 77.0 |
| MS.gene65910.t1 | MTR_1g034210 | 37.895 | 95 | 59 | 0 | 13 | 107 | 7 | 101 | 9.53e-16 | 76.6 |
| MS.gene65910.t1 | MTR_1g034210 | 37.895 | 95 | 59 | 0 | 13 | 107 | 7 | 101 | 1.43e-15 | 76.6 |
| MS.gene65910.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 27 | 114 | 34 | 121 | 2.07e-15 | 76.6 |
| MS.gene65910.t1 | MTR_3g005440 | 33.028 | 109 | 72 | 1 | 7 | 114 | 235 | 343 | 1.31e-13 | 71.2 |
| MS.gene65910.t1 | MTR_3g005420 | 24.275 | 276 | 137 | 9 | 13 | 278 | 21 | 234 | 3.03e-15 | 76.3 |
| MS.gene65910.t1 | MTR_1g035500 | 32.468 | 154 | 91 | 4 | 7 | 160 | 19 | 159 | 4.14e-15 | 72.8 |
| MS.gene65910.t1 | MTR_1g021350 | 25.163 | 306 | 181 | 11 | 14 | 283 | 22 | 315 | 5.05e-15 | 75.1 |
| MS.gene65910.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 28 | 156 | 1 | 114 | 3.82e-14 | 70.9 |
| MS.gene65910.t1 | MTR_1g035470 | 34.884 | 129 | 70 | 5 | 28 | 156 | 1 | 115 | 1.07e-13 | 67.8 |
| MS.gene65910.t1 | MTR_1g035520 | 42.697 | 89 | 48 | 2 | 28 | 116 | 87 | 172 | 3.02e-13 | 70.1 |
| MS.gene65910.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.69e-13 | 68.2 |
| MS.gene65910.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 6.22e-13 | 68.6 |
| MS.gene65910.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 1.00e-12 | 68.2 |
| MS.gene65910.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 1.02e-12 | 68.6 |
| MS.gene65910.t1 | MTR_1g021320 | 39.823 | 113 | 61 | 3 | 171 | 283 | 489 | 594 | 1.90e-12 | 68.2 |
| MS.gene65910.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 4.13e-12 | 67.0 |
| MS.gene65910.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 4.07e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65910.t1 | AT4G01580 | 40.870 | 115 | 67 | 1 | 3 | 116 | 19 | 133 | 1.41e-23 | 95.9 |
| MS.gene65910.t1 | AT1G49475 | 39.516 | 124 | 72 | 2 | 12 | 133 | 33 | 155 | 2.10e-23 | 95.1 |
| MS.gene65910.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 2.59e-23 | 98.2 |
| MS.gene65910.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 3.63e-23 | 98.6 |
| MS.gene65910.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 6.71e-22 | 91.3 |
| MS.gene65910.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 7.71e-22 | 91.7 |
| MS.gene65910.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 1.03e-17 | 79.3 |
| MS.gene65910.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 2.87e-12 | 66.2 |
Find 0 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | 50844:4934-4953 | MS.gene65910:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | 50844:4680-4699 | MS.gene65910:intergenic | 15.0% |
| !! | ATTATCACATAAATGTTTAT+TGG | - | 50844:6406-6425 | MS.gene65910:intron | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | 50844:4945-4964 | MS.gene65910:intergenic | 15.0% |
| !!! | AAAAATTAGAAAGTTTTTGT+TGG | + | 50844:6514-6533 | MS.gene65910:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | 50844:5057-5076 | MS.gene65910:intron | 15.0% |
| !!! | TTTGTCCTTTTTTTTTTTAT+TGG | - | 50844:6545-6564 | MS.gene65910:intron | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | 50844:5342-5361 | MS.gene65910:intron | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | 50844:5229-5248 | MS.gene65910:intergenic | 20.0% |
| !! | TAAGAAAAAAAAAATGCACA+TGG | - | 50844:5027-5046 | MS.gene65910:intron | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | 50844:5233-5252 | MS.gene65910:CDS | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | 50844:5431-5450 | MS.gene65910:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 50844:5602-5621 | MS.gene65910:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 50844:5615-5634 | MS.gene65910:CDS | 20.0% |
| !! | TTATGTGATAATATCTGATT+TGG | + | 50844:6398-6417 | MS.gene65910:intergenic | 20.0% |
| !! | TTCTGCCAATAAAAAAAAAA+AGG | + | 50844:6553-6572 | MS.gene65910:intergenic | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | 50844:4960-4979 | MS.gene65910:intron | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | 50844:5427-5446 | MS.gene65910:intergenic | 20.0% |
| !!! | GCAATTTTTTTTTTCTTCAA+AGG | - | 50844:5079-5098 | MS.gene65910:intron | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | 50844:5056-5075 | MS.gene65910:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | 50844:5017-5036 | MS.gene65910:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 50844:5537-5556 | MS.gene65910:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 50844:5579-5598 | MS.gene65910:CDS | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | 50844:4626-4645 | MS.gene65910:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | 50844:4959-4978 | MS.gene65910:intron | 25.0% |
| ! | GAAAGGAAAATTTATCTCTA+AGG | + | 50844:5766-5785 | MS.gene65910:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | 50844:5341-5360 | MS.gene65910:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 50844:5625-5644 | MS.gene65910:CDS | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | 50844:5134-5153 | MS.gene65910:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | 50844:6076-6095 | MS.gene65910:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | 50844:6008-6027 | MS.gene65910:intron | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | 50844:5491-5510 | MS.gene65910:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | 50844:4971-4990 | MS.gene65910:intron | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 50844:5719-5738 | MS.gene65910:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | 50844:6075-6094 | MS.gene65910:intron | 25.0% |
| !!! | ATCTGATTTGGATAATTGTT+AGG | + | 50844:6386-6405 | MS.gene65910:intergenic | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | 50844:5249-5268 | MS.gene65910:CDS | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 50844:5537-5556 | MS.gene65910:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | 50844:5248-5267 | MS.gene65910:CDS | 25.0% |
| !!! | TTGAGTTAGATTCTTTTTTC+AGG | - | 50844:4715-4734 | MS.gene65910:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | 50844:5640-5659 | MS.gene65910:CDS | 30.0% | |
| ACAATTTGTGTTGTCATTGT+CGG | + | 50844:6830-6849 | MS.gene65910:intergenic | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | 50844:5293-5312 | MS.gene65910:CDS | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | 50844:4621-4640 | MS.gene65910:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | 50844:5294-5313 | MS.gene65910:CDS | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | 50844:5527-5546 | MS.gene65910:CDS | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | 50844:4924-4943 | MS.gene65910:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 50844:5636-5655 | MS.gene65910:CDS | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | 50844:5463-5482 | MS.gene65910:intron | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | 50844:5310-5329 | MS.gene65910:CDS | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | 50844:6631-6650 | MS.gene65910:intron | 30.0% | |
| TCTAAAGATGTGAACAATGT+AGG | + | 50844:6803-6822 | MS.gene65910:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 50844:5884-5903 | MS.gene65910:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 50844:5635-5654 | MS.gene65910:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | 50844:6588-6607 | MS.gene65910:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | 50844:5309-5328 | MS.gene65910:CDS | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | 50844:5846-5865 | MS.gene65910:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 50844:5597-5616 | MS.gene65910:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | 50844:5838-5857 | MS.gene65910:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | 50844:4837-4856 | MS.gene65910:CDS | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | 50844:5346-5365 | MS.gene65910:intron | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | 50844:5311-5330 | MS.gene65910:CDS | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | 50844:6638-6657 | MS.gene65910:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | 50844:5166-5185 | MS.gene65910:intron | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | 50844:6568-6587 | MS.gene65910:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | 50844:4642-4661 | MS.gene65910:CDS | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | 50844:5940-5959 | MS.gene65910:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | - | 50844:6736-6755 | MS.gene65910:intron | 35.0% | |
| GGATAATTGTTAGGACCAAT+TGG | + | 50844:6377-6396 | MS.gene65910:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | 50844:6221-6240 | MS.gene65910:intron | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | 50844:5165-5184 | MS.gene65910:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | 50844:6359-6378 | MS.gene65910:intron | 35.0% | |
| TGCAACTTACCAGAAGAAAT+CGG | + | 50844:6212-6231 | MS.gene65910:intergenic | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | 50844:6580-6599 | MS.gene65910:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | 50844:4890-4909 | MS.gene65910:intron | 35.0% | |
| TTAGGACCAATTGGTATCAA+CGG | + | 50844:6368-6387 | MS.gene65910:intergenic | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | 50844:5014-5033 | MS.gene65910:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | 50844:5167-5186 | MS.gene65910:intron | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | 50844:5543-5562 | MS.gene65910:CDS | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | 50844:4851-4870 | MS.gene65910:CDS | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 50844:5701-5720 | MS.gene65910:intergenic | 35.0% |
| ! | GTTGTAATTTTCTCAGCAGT+AGG | + | 50844:6114-6133 | MS.gene65910:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | 50844:5423-5442 | MS.gene65910:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | 50844:6601-6620 | MS.gene65910:intron | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | 50844:5264-5283 | MS.gene65910:CDS | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | 50844:5177-5196 | MS.gene65910:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 50844:5589-5608 | MS.gene65910:CDS | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | 50844:5369-5388 | MS.gene65910:intron | 40.0% | |
| ATCCTGATTAGGAACTTTGC+AGG | + | 50844:6664-6683 | MS.gene65910:intergenic | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | 50844:5855-5874 | MS.gene65910:CDS | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | 50844:5858-5877 | MS.gene65910:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | 50844:6618-6637 | MS.gene65910:intron | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | 50844:5312-5331 | MS.gene65910:CDS | 40.0% | |
| TAGGACCAATTGGTATCAAC+GGG | + | 50844:6367-6386 | MS.gene65910:intergenic | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | 50844:5162-5181 | MS.gene65910:intergenic | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | 50844:6689-6708 | MS.gene65910:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | 50844:5209-5228 | MS.gene65910:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | 50844:5181-5200 | MS.gene65910:intron | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | 50844:5675-5694 | MS.gene65910:CDS | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | 50844:5783-5802 | MS.gene65910:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | 50844:4856-4875 | MS.gene65910:CDS | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | 50844:4850-4869 | MS.gene65910:CDS | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | 50844:5397-5416 | MS.gene65910:intron | 40.0% |
| ATGTTAGACTCTCAGGTGGA+TGG | - | 50844:6701-6720 | MS.gene65910:intron | 45.0% | |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | 50844:5785-5804 | MS.gene65910:CDS | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | 50844:5788-5807 | MS.gene65910:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | 50844:6171-6190 | MS.gene65910:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | 50844:6673-6692 | MS.gene65910:intron | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | 50844:4898-4917 | MS.gene65910:intron | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | 50844:6675-6694 | MS.gene65910:intergenic | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | 50844:5178-5197 | MS.gene65910:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | 50844:5208-5227 | MS.gene65910:intergenic | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | 50844:6690-6709 | MS.gene65910:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | 50844:5207-5226 | MS.gene65910:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | 50844:5210-5229 | MS.gene65910:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | 50844:6175-6194 | MS.gene65910:intergenic | 45.0% | |
| TGTTGTCATGCGTGCATCAT+CGG | - | 50844:6179-6198 | MS.gene65910:intron | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | 50844:5378-5397 | MS.gene65910:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | 50844:6251-6270 | MS.gene65910:intron | 45.0% |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | 50844:5396-5415 | MS.gene65910:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | 50844:5395-5414 | MS.gene65910:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 50844:5792-5811 | MS.gene65910:CDS | 45.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | + | 50844:5022-5041 | MS.gene65910:intergenic | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | + | 50844:5021-5040 | MS.gene65910:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | 50844:5201-5220 | MS.gene65910:intron | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | 50844:6697-6716 | MS.gene65910:intron | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | 50844:6700-6719 | MS.gene65910:intergenic | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | 50844:5401-5420 | MS.gene65910:intron | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | 50844:6694-6713 | MS.gene65910:intron | 50.0% | |
| GGCCTGCAAAGTTCCTAATC+AGG | - | 50844:6659-6678 | MS.gene65910:intron | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | 50844:5377-5396 | MS.gene65910:intergenic | 50.0% | |
| TAGACTCTCAGGTGGATGGA+AGG | - | 50844:6705-6724 | MS.gene65910:intron | 50.0% | |
| !! | GGTGGAACACCGATTTCTTC+TGG | - | 50844:6200-6219 | MS.gene65910:intron | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | 50844:6717-6736 | MS.gene65910:intron | 50.0% |
| CATGCTGACAGAGAGTCCAG+AGG | - | 50844:5921-5940 | MS.gene65910:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | 50844:5383-5402 | MS.gene65910:intron | 55.0% | |
| TGTCATGCGTGCATCATCGG+TGG | - | 50844:6182-6201 | MS.gene65910:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50844 | gene | 4591 | 6862 | 4591 | ID=MS.gene65910 |
| 50844 | mRNA | 4591 | 6862 | 4591 | ID=MS.gene65910.t1;Parent=MS.gene65910 |
| 50844 | exon | 6782 | 6862 | 6782 | ID=MS.gene65910.t1.exon1;Parent=MS.gene65910.t1 |
| 50844 | CDS | 6782 | 6862 | 6782 | ID=cds.MS.gene65910.t1;Parent=MS.gene65910.t1 |
| 50844 | exon | 5511 | 5925 | 5511 | ID=MS.gene65910.t1.exon2;Parent=MS.gene65910.t1 |
| 50844 | CDS | 5511 | 5925 | 5511 | ID=cds.MS.gene65910.t1;Parent=MS.gene65910.t1 |
| 50844 | exon | 5232 | 5356 | 5232 | ID=MS.gene65910.t1.exon3;Parent=MS.gene65910.t1 |
| 50844 | CDS | 5232 | 5356 | 5232 | ID=cds.MS.gene65910.t1;Parent=MS.gene65910.t1 |
| 50844 | exon | 4591 | 4882 | 4591 | ID=MS.gene65910.t1.exon4;Parent=MS.gene65910.t1 |
| 50844 | CDS | 4591 | 4882 | 4591 | ID=cds.MS.gene65910.t1;Parent=MS.gene65910.t1 |
| Gene Sequence |
| Protein sequence |
