AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65934

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65934.t1 MTR_1g075610 98.425 127 2 0 1 127 1 127 6.02e-84 251
MS.gene65934.t1 MTR_4g007750 54.962 131 52 1 16 139 2 132 5.92e-39 135
MS.gene65934.t1 MTR_4g094430 53.061 98 40 2 16 113 2 93 3.24e-27 104
MS.gene65934.t1 MTR_2g032060 51.020 98 42 2 16 113 2 93 4.83e-25 99.0
MS.gene65934.t1 MTR_3g040520 46.602 103 43 3 16 107 23 124 1.81e-18 82.8
MS.gene65934.t1 MTR_3g040810 44.660 103 45 3 16 107 21 122 5.92e-18 81.3
MS.gene65934.t1 MTR_8g080190 38.793 116 65 3 3 116 368 479 7.57e-17 78.2
MS.gene65934.t1 MTR_8g080190 38.793 116 65 3 3 116 368 479 8.47e-17 78.2
MS.gene65934.t1 MTR_8g092290 38.333 120 67 3 9 128 132 244 1.25e-16 77.4
MS.gene65934.t1 MTR_8g461270 39.286 112 64 2 16 127 45 152 8.39e-16 74.3
MS.gene65934.t1 MTR_7g011800 44.444 108 55 3 5 111 106 209 3.23e-15 73.6
MS.gene65934.t1 MTR_1g098300 35.714 126 73 4 4 128 111 229 7.34e-15 72.4
MS.gene65934.t1 MTR_3g085650 42.574 101 54 2 16 116 414 510 9.66e-15 72.0
MS.gene65934.t1 MTR_8g099770 45.745 94 47 2 18 111 90 179 1.05e-14 72.0
MS.gene65934.t1 MTR_2g085200 45.652 92 46 2 16 107 132 219 1.07e-14 72.0
MS.gene65934.t1 MTR_3g085650 42.574 101 54 2 16 116 414 510 1.37e-14 71.6
MS.gene65934.t1 MTR_3g085650 42.574 101 54 2 16 116 414 510 1.41e-14 71.6
MS.gene65934.t1 MTR_5g008860 44.565 92 47 2 16 107 138 225 1.50e-14 71.6
MS.gene65934.t1 MTR_3g085650 42.574 101 54 2 16 116 414 510 1.58e-14 71.6
MS.gene65934.t1 MTR_2g020210 45.192 104 52 3 5 107 88 187 1.81e-14 71.2
MS.gene65934.t1 MTR_2g026860 71.111 45 13 0 84 128 5 49 2.04e-14 66.6
MS.gene65934.t1 MTR_3g096960 37.500 120 67 4 16 131 16 131 2.87e-14 70.5
MS.gene65934.t1 MTR_6g080470 42.857 98 50 2 16 113 12 103 3.54e-14 70.1
MS.gene65934.t1 MTR_3g054080 44.444 99 47 3 16 112 12 104 6.79e-14 69.3
MS.gene65934.t1 MTR_4g109090 44.565 92 47 2 16 107 103 190 9.28e-14 69.3
MS.gene65934.t1 MTR_3g098760 46.154 91 45 2 17 107 96 182 1.01e-13 68.9
MS.gene65934.t1 MTR_6g013030 40.625 96 53 2 16 111 108 199 1.05e-13 68.9
MS.gene65934.t1 MTR_4g103810 42.424 99 55 2 18 116 108 204 1.42e-13 68.6
MS.gene65934.t1 MTR_4g103810 42.424 99 55 2 18 116 218 314 2.09e-13 68.2
MS.gene65934.t1 MTR_4g118780 41.346 104 56 3 5 107 90 189 3.42e-13 67.4
MS.gene65934.t1 MTR_7g114300 42.424 99 51 3 16 113 105 198 3.53e-13 67.4
MS.gene65934.t1 MTR_7g114300 40.816 98 54 2 16 113 105 198 4.28e-13 67.0
MS.gene65934.t1 MTR_7g114300 42.424 99 51 3 16 113 105 198 4.99e-13 67.0
MS.gene65934.t1 MTR_4g078290 44.444 90 46 2 18 107 129 214 1.01e-12 66.2
MS.gene65934.t1 MTR_4g078290 44.444 90 46 2 18 107 129 214 1.01e-12 66.2
MS.gene65934.t1 MTR_7g114300 40.816 98 54 2 16 113 105 198 1.06e-12 66.2
MS.gene65934.t1 MTR_1g081870 42.857 98 52 2 16 113 120 213 2.37e-12 65.1
MS.gene65934.t1 MTR_2g090405 38.000 100 58 2 14 113 137 232 3.50e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65934.t1 AT1G20930 84.746 118 18 0 11 128 9 126 9.60e-66 204
MS.gene65934.t1 AT1G76540 83.898 118 19 0 10 127 6 123 5.03e-65 202
MS.gene65934.t1 AT2G38620 60.870 115 37 2 16 123 2 115 2.27e-37 130
MS.gene65934.t1 AT2G38620 60.870 115 37 2 16 123 2 115 2.27e-37 130
MS.gene65934.t1 AT3G54180 61.947 113 37 2 16 123 2 113 2.48e-37 131
MS.gene65934.t1 AT2G38620 60.870 115 37 2 16 123 2 115 2.27e-36 129
MS.gene65934.t1 AT3G48750 50.000 98 43 2 16 113 2 93 7.53e-25 98.6
MS.gene65934.t1 AT1G67580 42.574 101 54 2 16 116 404 500 6.66e-20 87.0
MS.gene65934.t1 AT1G67580 42.574 101 54 2 16 116 404 500 6.66e-20 87.0
MS.gene65934.t1 AT5G10270 46.602 103 43 3 16 107 24 125 4.44e-19 84.3
MS.gene65934.t1 AT5G64960 46.602 103 43 3 16 107 24 125 8.25e-19 84.0
MS.gene65934.t1 AT1G66750 49.438 89 39 2 24 112 19 101 1.66e-16 76.6
MS.gene65934.t1 AT5G39420 44.792 96 41 4 16 107 103 190 2.81e-15 73.6
MS.gene65934.t1 AT1G73690 44.211 95 47 3 18 112 11 99 3.34e-15 73.2
MS.gene65934.t1 AT1G18670 43.878 98 51 2 16 113 129 222 3.39e-15 73.6
MS.gene65934.t1 AT1G18670 43.878 98 51 2 16 113 129 222 3.58e-15 73.6
MS.gene65934.t1 AT1G18670 43.878 98 51 2 16 113 129 222 4.12e-15 73.2
MS.gene65934.t1 AT1G03740 47.778 90 43 2 18 107 213 298 4.20e-15 73.2
MS.gene65934.t1 AT1G03740 47.778 90 43 2 18 107 213 298 4.35e-15 73.2
MS.gene65934.t1 AT1G71530 46.392 97 48 2 11 107 140 232 4.88e-15 72.4
MS.gene65934.t1 AT1G71530 46.392 97 48 2 11 107 140 232 7.11e-15 72.4
MS.gene65934.t1 AT1G71530 46.392 97 48 2 11 107 140 232 8.07e-15 72.0
MS.gene65934.t1 AT4G10010 47.826 92 44 2 16 107 154 241 9.02e-15 72.0
MS.gene65934.t1 AT5G50860 46.154 91 43 3 18 107 114 199 9.02e-15 72.0
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 9.35e-15 72.0
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 9.35e-15 72.0
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 9.35e-15 72.0
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 9.35e-15 72.0
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 9.35e-15 72.0
MS.gene65934.t1 AT1G53050 44.565 92 47 2 16 107 132 219 1.35e-14 71.6
MS.gene65934.t1 AT1G53050 44.565 92 47 2 16 107 132 219 1.35e-14 71.6
MS.gene65934.t1 AT1G18040 46.237 93 44 3 20 112 14 100 1.41e-14 71.2
MS.gene65934.t1 AT1G71530 46.392 97 48 2 11 107 140 232 2.35e-14 70.9
MS.gene65934.t1 AT3G05050 40.909 110 60 3 5 113 124 229 3.52e-14 70.5
MS.gene65934.t1 AT3G05050 40.909 110 60 3 5 113 124 229 3.52e-14 70.5
MS.gene65934.t1 AT3G05050 40.909 110 60 3 5 113 124 229 3.52e-14 70.5
MS.gene65934.t1 AT1G57700 44.681 94 48 2 14 107 142 231 5.01e-14 70.1
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 1.12e-13 68.9
MS.gene65934.t1 AT1G33770 45.652 92 46 2 16 107 139 226 1.16e-13 68.9
MS.gene65934.t1 AT1G54610 42.857 98 52 2 16 113 116 209 1.19e-13 68.9
MS.gene65934.t1 AT1G54610 42.857 98 52 2 16 113 116 209 1.19e-13 68.9
MS.gene65934.t1 AT1G54610 42.857 98 52 2 16 113 116 209 1.19e-13 68.9
MS.gene65934.t1 AT5G44290 45.556 90 45 2 18 107 137 222 1.60e-13 68.6
MS.gene65934.t1 AT1G09600 43.478 92 48 2 16 107 161 248 3.36e-13 67.8
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 163 254 3.67e-13 67.4
MS.gene65934.t1 AT1G74330 43.564 101 47 3 16 113 119 212 4.13e-13 67.4
MS.gene65934.t1 AT1G74330 43.564 101 47 3 16 113 119 212 4.13e-13 67.4
MS.gene65934.t1 AT5G50860 46.154 91 43 3 18 107 114 199 4.26e-13 67.4
MS.gene65934.t1 AT1G74330 43.564 101 47 3 16 113 119 212 4.66e-13 67.4
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 163 254 4.95e-13 67.0
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 163 254 4.95e-13 67.0
MS.gene65934.t1 AT3G01085 39.796 98 55 2 16 113 113 206 5.37e-13 67.0
MS.gene65934.t1 AT3G01085 39.796 98 55 2 16 113 113 206 5.37e-13 67.0
MS.gene65934.t1 AT3G01085 39.796 98 55 2 16 113 113 206 5.68e-13 67.0
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 6.89e-13 66.6
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 6.89e-13 66.6
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 8.10e-13 66.6
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 8.10e-13 66.6
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 8.10e-13 66.6
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 8.10e-13 66.6
MS.gene65934.t1 AT5G63370 41.053 95 49 3 18 108 297 388 8.10e-13 66.6
MS.gene65934.t1 AT2G38620 75.610 41 10 0 16 56 2 42 2.29e-12 63.9
MS.gene65934.t1 AT4G22940 37.864 103 60 3 5 106 89 188 1.58e-11 62.8
MS.gene65934.t1 AT4G22940 37.864 103 60 3 5 106 89 188 2.89e-11 62.0

Find 47 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTGGAGTTTCAATAAT+TGG 0.211597 1.1:-26602970 MS.gene65934:CDS
AGGGAAAACTGTGTTGTATT+TGG 0.261009 1.1:-26603736 MS.gene65934:CDS
AACTTTGAATTTAACATTGC+TGG 0.301048 1.1:-26603001 MS.gene65934:CDS
AAGAAATTAACATACTTTGA+TGG 0.359794 1.1:+26603635 None:intergenic
ATTAACATACTTTGATGGTT+GGG 0.393821 1.1:+26603640 None:intergenic
CACTACTGCGATTGTTTCAC+CGG 0.398610 1.1:+26604086 None:intergenic
AACAATCGCAGTAGTGTTAT+CGG 0.409220 1.1:-26604079 MS.gene65934:CDS
CTCATGATCCACATGTTGTT+AGG 0.436119 1.1:-26603879 MS.gene65934:intron
AACCTCGACTTTGATATTCT+CGG 0.440454 1.1:-26602893 MS.gene65934:CDS
GAAACCTCGCGAAGCGTAGT+AGG 0.445811 1.1:+26603919 None:intergenic
AATTAACATACTTTGATGGT+TGG 0.452118 1.1:+26603639 None:intergenic
AAAGTTGGAGGAGGAACGTA+TGG 0.471413 1.1:-26604030 MS.gene65934:CDS
TTAACATACTTTGATGGTTG+GGG 0.473395 1.1:+26603641 None:intergenic
AGAGCAAGAGAGAAAGCTAC+TGG 0.475204 1.1:-26603997 MS.gene65934:CDS
ACCTCGACTTTGATATTCTC+GGG 0.485811 1.1:-26602892 MS.gene65934:CDS
TTCGAGAAGCTCGAGAAAGT+TGG 0.501777 1.1:-26604045 MS.gene65934:CDS
TCAATGTTGGTATCGACATA+AGG 0.502458 1.1:-26603024 MS.gene65934:CDS
CTGATCTTAAGAAATTCATT+CGG 0.515537 1.1:-26603695 MS.gene65934:CDS
CGCAGTAGTGTTATCGGCGA+AGG 0.529473 1.1:-26604073 MS.gene65934:CDS
TACTTCCGACGATGTGAAAG+TGG 0.553582 1.1:+26602936 None:intergenic
TCCTCCTACTACGCTTCGCG+AGG 0.556697 1.1:-26603923 MS.gene65934:CDS
GAGAAGCTCGAGAAAGTTGG+AGG 0.563232 1.1:-26604042 MS.gene65934:CDS
CGTCTTCATGAAGATGATGA+AGG 0.573237 1.1:-26603949 MS.gene65934:CDS
TTGAATTTAACATTGCTGGA+AGG 0.576174 1.1:-26602997 MS.gene65934:CDS
ACCTCGCGAAGCGTAGTAGG+AGG 0.577549 1.1:+26603922 None:intergenic
AAACAAGGACAGAACAAGGA+AGG 0.578064 1.1:-26603756 MS.gene65934:CDS
TCTGGAGTTTCAATAATTGG+AGG 0.578625 1.1:-26602967 MS.gene65934:CDS
ATAGAAAGGTTAACAAGTGG+TGG 0.599117 1.1:-26603054 MS.gene65934:intron
TGTCGATACCAACATTGAAG+TGG 0.599252 1.1:+26603029 None:intergenic
AAGCTCGAGAAAGTTGGAGG+AGG 0.601692 1.1:-26604039 MS.gene65934:CDS
AACCTCCACTTTCACATCGT+CGG 0.603890 1.1:-26602941 MS.gene65934:CDS
TGGAGGAGGAACGTATGGGA+AGG 0.604932 1.1:-26604025 MS.gene65934:CDS
TTAACTTACCTAACAACATG+TGG 0.608876 1.1:+26603871 None:intergenic
AAGTTGGAGGAGGAACGTAT+GGG 0.610684 1.1:-26604029 MS.gene65934:CDS
TAACATACTTTGATGGTTGG+GGG 0.617575 1.1:+26603642 None:intergenic
GAAGTATTCTCAATTACATG+TGG 0.624167 1.1:-26602919 MS.gene65934:CDS
GAGCAAGAGAGAAAGCTACT+GGG 0.629277 1.1:-26603996 MS.gene65934:CDS
TCCCGAGAATATCAAAGTCG+AGG 0.631210 1.1:+26602891 None:intergenic
AACAAGGACAGAACAAGGAA+GGG 0.631498 1.1:-26603755 MS.gene65934:CDS
GTATTCTCAATTACATGTGG+AGG 0.636280 1.1:-26602916 MS.gene65934:CDS
ACTACTGCGATTGTTTCACC+GGG 0.640436 1.1:+26604087 None:intergenic
TGTGAAACAAGGACAGAACA+AGG 0.644401 1.1:-26603760 MS.gene65934:CDS
TCAATAGAAAGGTTAACAAG+TGG 0.650227 1.1:-26603057 MS.gene65934:intron
GATTCAATCATGGAGAAACC+CGG 0.652544 1.1:-26604105 None:intergenic
TGGTGGTGCCACTTCAATGT+TGG 0.668205 1.1:-26603037 MS.gene65934:CDS
AGGTTGTTGGATGTGAAACA+AGG 0.680859 1.1:-26603771 MS.gene65934:CDS
TTCCGACGATGTGAAAGTGG+AGG 0.691070 1.1:+26602939 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAATAAAAAAT+TGG - chr1.1:26603424-26603443 MS.gene65934:intron 0.0%
!!! TTTATTTTTTTTTTAAAAAA+AGG + chr1.1:26603420-26603439 None:intergenic 0.0%
!! AAAAAAAAATAAAAAATTGG+AGG - chr1.1:26603427-26603446 MS.gene65934:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG - chr1.1:26603659-26603678 MS.gene65934:CDS 10.0%
!! AATTTCAATTCAATTTCAAT+TGG - chr1.1:26603134-26603153 MS.gene65934:intron 15.0%
!! ATTGAAATTGAAAACAATTT+AGG + chr1.1:26603123-26603142 None:intergenic 15.0%
!! GGAAGAAATTAAAAAAAAAA+AGG + chr1.1:26603467-26603486 None:intergenic 15.0%
!! TTGAAATTGAAAACAATTTA+GGG + chr1.1:26603122-26603141 None:intergenic 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr1.1:26603660-26603679 MS.gene65934:CDS 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr1.1:26603658-26603677 MS.gene65934:CDS 15.0%
!!! TTTCAATTGGATTTAAAATT+AGG - chr1.1:26603147-26603166 MS.gene65934:intron 15.0%
!! AAGAAATTAACATACTTTGA+TGG + chr1.1:26603335-26603354 None:intergenic 20.0%
!! ATTGGAGGAAATTAAAAAAA+TGG + chr1.1:26603488-26603507 None:intergenic 20.0%
!! TAAAAAAAAAAATATCCACG+TGG - chr1.1:26603538-26603557 MS.gene65934:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr1.1:26603661-26603680 MS.gene65934:CDS 20.0%
!!! TAGTTTTTTTTTATTCTTGC+AGG + chr1.1:26603520-26603539 None:intergenic 20.0%
!!! TGATCTCATTTATTTTCTTA+TGG - chr1.1:26603857-26603876 MS.gene65934:intron 20.0%
!!! TTTTCACATGCATATTTATT+AGG + chr1.1:26603735-26603754 None:intergenic 20.0%
! AACTTTGAATTTAACATTGC+TGG - chr1.1:26603966-26603985 MS.gene65934:CDS 25.0%
! AGCAATTATCAAAACAATCT+AGG + chr1.1:26603830-26603849 None:intergenic 25.0%
! CTGATCTTAAGAAATTCATT+CGG - chr1.1:26603272-26603291 MS.gene65934:intron 25.0%
! GCAATTATCAAAACAATCTA+GGG + chr1.1:26603829-26603848 None:intergenic 25.0%
!! AATTAACATACTTTGATGGT+TGG + chr1.1:26603331-26603350 None:intergenic 25.0%
!! ATTAACATACTTTGATGGTT+GGG + chr1.1:26603330-26603349 None:intergenic 25.0%
!!! AGATTGTTTTGATAATTGCT+AGG - chr1.1:26603830-26603849 MS.gene65934:intron 25.0%
!!! GTATTTGGTTTTTGAGTATA+TGG - chr1.1:26603246-26603265 MS.gene65934:intron 25.0%
!!! GTTGATTTTGTGAATTTTGT+TGG - chr1.1:26603169-26603188 MS.gene65934:intron 25.0%
ATACCTGATGATCAATAGAA+AGG - chr1.1:26603899-26603918 MS.gene65934:CDS 30.0%
ATGAAATCTTCTCAATTGAG+TGG - chr1.1:26603798-26603817 MS.gene65934:intron 30.0%
TAACCTTTCTATTGATCATC+AGG + chr1.1:26603905-26603924 None:intergenic 30.0%
TCAATAGAAAGGTTAACAAG+TGG - chr1.1:26603910-26603929 MS.gene65934:CDS 30.0%
TGCCAAAGATTCAATACTTA+GGG - chr1.1:26603631-26603650 MS.gene65934:intron 30.0%
TTAACTTACCTAACAACATG+TGG + chr1.1:26603099-26603118 None:intergenic 30.0%
TTGAATTTAACATTGCTGGA+AGG - chr1.1:26603970-26603989 MS.gene65934:CDS 30.0%
! ATTAGGCTTAATTGCACTTT+TGG + chr1.1:26603718-26603737 None:intergenic 30.0%
! GAAGTATTCTCAATTACATG+TGG - chr1.1:26604048-26604067 MS.gene65934:CDS 30.0%
! TATTGAATCTTTGGCAGTTT+TGG + chr1.1:26603627-26603646 None:intergenic 30.0%
! TCATCTGGAGTTTCAATAAT+TGG - chr1.1:26603997-26604016 MS.gene65934:CDS 30.0%
! TCTTGCAGGCATTTTTAAAT+TGG + chr1.1:26603506-26603525 None:intergenic 30.0%
! TTAACATACTTTGATGGTTG+GGG + chr1.1:26603329-26603348 None:intergenic 30.0%
!! TTGTGAATTTTGTTGGTGTT+AGG - chr1.1:26603176-26603195 MS.gene65934:intron 30.0%
AACAATCGCAGTAGTGTTAT+CGG - chr1.1:26602888-26602907 MS.gene65934:CDS 35.0%
AACCTCGACTTTGATATTCT+CGG - chr1.1:26604074-26604093 MS.gene65934:CDS 35.0%
AGGGAAAACTGTGTTGTATT+TGG - chr1.1:26603231-26603250 MS.gene65934:intron 35.0%
ATAGAAAGGTTAACAAGTGG+TGG - chr1.1:26603913-26603932 MS.gene65934:CDS 35.0%
ATCAACGACCAAGTCAAAAA+TGG - chr1.1:26603592-26603611 MS.gene65934:intron 35.0%
CCAAAGATTCAATACTTAGG+GGG - chr1.1:26603633-26603652 MS.gene65934:intron 35.0%
CTGCCAAAGATTCAATACTT+AGG - chr1.1:26603630-26603649 MS.gene65934:intron 35.0%
GCCAAAGATTCAATACTTAG+GGG - chr1.1:26603632-26603651 MS.gene65934:intron 35.0%
GTATTCTCAATTACATGTGG+AGG - chr1.1:26604051-26604070 MS.gene65934:CDS 35.0%
! TAACATACTTTGATGGTTGG+GGG + chr1.1:26603328-26603347 None:intergenic 35.0%
! TCTGGAGTTTCAATAATTGG+AGG - chr1.1:26604000-26604019 MS.gene65934:CDS 35.0%
! TGCAGGCATTTTTAAATTGG+AGG + chr1.1:26603503-26603522 None:intergenic 35.0%
!! TCAATGTTGGTATCGACATA+AGG - chr1.1:26603943-26603962 MS.gene65934:CDS 35.0%
!!! TTTTGTTGGTGTTAGGTTGT+TGG - chr1.1:26603183-26603202 MS.gene65934:intron 35.0%
AAACAAGGACAGAACAAGGA+AGG - chr1.1:26603211-26603230 MS.gene65934:intron 40.0%
AACAAGGACAGAACAAGGAA+GGG - chr1.1:26603212-26603231 MS.gene65934:intron 40.0%
ACCAAGTCAAAAATGGACCA+GGG - chr1.1:26603599-26603618 MS.gene65934:intron 40.0%
ACCTCGACTTTGATATTCTC+GGG - chr1.1:26604075-26604094 MS.gene65934:CDS 40.0%
AGGTTGTTGGATGTGAAACA+AGG - chr1.1:26603196-26603215 MS.gene65934:intron 40.0%
CCCTAACTTTCCAAAAGTTG+CGG + chr1.1:26603693-26603712 None:intergenic 40.0%
CGTCTTCATGAAGATGATGA+AGG - chr1.1:26603018-26603037 MS.gene65934:CDS 40.0%
CTCATGATCCACATGTTGTT+AGG - chr1.1:26603088-26603107 MS.gene65934:intron 40.0%
CTTTCCAAAAGTTGCGGTTA+TGG + chr1.1:26603687-26603706 None:intergenic 40.0%
TGTCGATACCAACATTGAAG+TGG + chr1.1:26603941-26603960 None:intergenic 40.0%
TGTGAAACAAGGACAGAACA+AGG - chr1.1:26603207-26603226 MS.gene65934:intron 40.0%
! ATTCGGAGTTTTCGTCAAAC+TGG - chr1.1:26603289-26603308 MS.gene65934:intron 40.0%
! TTCGGAGTTTTCGTCAAACT+GGG - chr1.1:26603290-26603309 MS.gene65934:intron 40.0%
! TTGCTGGAAGGATTTTCATC+TGG - chr1.1:26603982-26604001 MS.gene65934:CDS 40.0%
!! ACCGCAACTTTTGGAAAGTT+AGG - chr1.1:26603689-26603708 MS.gene65934:CDS 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG + chr1.1:26603636-26603655 None:intergenic 40.0%
!! CCGCAACTTTTGGAAAGTTA+GGG - chr1.1:26603690-26603709 MS.gene65934:CDS 40.0%
!! CGCAACTTTTGGAAAGTTAG+GGG - chr1.1:26603691-26603710 MS.gene65934:CDS 40.0%
!! GCAACTTTTGGAAAGTTAGG+GGG - chr1.1:26603692-26603711 MS.gene65934:CDS 40.0%
AAAGTTGGAGGAGGAACGTA+TGG - chr1.1:26602937-26602956 MS.gene65934:CDS 45.0%
AACCTCCACTTTCACATCGT+CGG - chr1.1:26604026-26604045 MS.gene65934:CDS 45.0%
AAGTTGGAGGAGGAACGTAT+GGG - chr1.1:26602938-26602957 MS.gene65934:CDS 45.0%
ACTACTGCGATTGTTTCACC+GGG + chr1.1:26602883-26602902 None:intergenic 45.0%
AGAGCAAGAGAGAAAGCTAC+TGG - chr1.1:26602970-26602989 MS.gene65934:CDS 45.0%
CAAGTCAAAAATGGACCAGG+GGG - chr1.1:26603601-26603620 MS.gene65934:intron 45.0%
CACTACTGCGATTGTTTCAC+CGG + chr1.1:26602884-26602903 None:intergenic 45.0%
CCAAGTCAAAAATGGACCAG+GGG - chr1.1:26603600-26603619 MS.gene65934:intron 45.0%
GACCAAGTCAAAAATGGACC+AGG - chr1.1:26603598-26603617 MS.gene65934:intron 45.0%
GAGCAAGAGAGAAAGCTACT+GGG - chr1.1:26602971-26602990 MS.gene65934:CDS 45.0%
TACTTCCGACGATGTGAAAG+TGG + chr1.1:26604034-26604053 None:intergenic 45.0%
TCCCGAGAATATCAAAGTCG+AGG + chr1.1:26604079-26604098 None:intergenic 45.0%
TTCGAGAAGCTCGAGAAAGT+TGG - chr1.1:26602922-26602941 MS.gene65934:CDS 45.0%
AAGCTCGAGAAAGTTGGAGG+AGG - chr1.1:26602928-26602947 MS.gene65934:CDS 50.0%
CACGTGGCACCTAACTTAAG+GGG - chr1.1:26603554-26603573 MS.gene65934:intron 50.0%
CCACGTGGCACCTAACTTAA+GGG - chr1.1:26603553-26603572 MS.gene65934:intron 50.0%
GAGAAGCTCGAGAAAGTTGG+AGG - chr1.1:26602925-26602944 MS.gene65934:CDS 50.0%
GCATCCACACCCCTTAAGTT+AGG + chr1.1:26603566-26603585 None:intergenic 50.0%
TCCACGTGGCACCTAACTTA+AGG - chr1.1:26603552-26603571 MS.gene65934:intron 50.0%
TTCCGACGATGTGAAAGTGG+AGG + chr1.1:26604031-26604050 None:intergenic 50.0%
! CATACTTTGATGGTTGGGGG+TGG + chr1.1:26603325-26603344 None:intergenic 50.0%
!! CCCCTGGTCCATTTTTGACT+TGG + chr1.1:26603603-26603622 None:intergenic 50.0%
!! TGACTTGGTCGTTGATGACG+TGG + chr1.1:26603588-26603607 None:intergenic 50.0%
!! TGGTGGTGCCACTTCAATGT+TGG - chr1.1:26603930-26603949 MS.gene65934:CDS 50.0%
CGCAGTAGTGTTATCGGCGA+AGG - chr1.1:26602894-26602913 MS.gene65934:CDS 55.0%
GAAACCTCGCGAAGCGTAGT+AGG + chr1.1:26603051-26603070 None:intergenic 55.0%
GGCACCTAACTTAAGGGGTG+TGG - chr1.1:26603559-26603578 MS.gene65934:intron 55.0%
TGGAGGAGGAACGTATGGGA+AGG - chr1.1:26602942-26602961 MS.gene65934:CDS 55.0%
! CCCTTAAGTTAGGTGCCACG+TGG + chr1.1:26603556-26603575 None:intergenic 55.0%
! GGGGCCATAACCGCAACTTT+TGG - chr1.1:26603680-26603699 MS.gene65934:CDS 55.0%
ACCTCGCGAAGCGTAGTAGG+AGG + chr1.1:26603048-26603067 None:intergenic 60.0%
TCCTCCTACTACGCTTCGCG+AGG - chr1.1:26603044-26603063 MS.gene65934:CDS 60.0%
!! CTTTGGCAGTTTTGGCCCCC+TGG + chr1.1:26603619-26603638 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 26602871 26604118 26602871 ID=MS.gene65934
chr1.1 mRNA 26602871 26604118 26602871 ID=MS.gene65934.t1;Parent=MS.gene65934
chr1.1 exon 26603880 26604118 26603880 ID=MS.gene65934.t1.exon1;Parent=MS.gene65934.t1
chr1.1 CDS 26603880 26604118 26603880 ID=cds.MS.gene65934.t1;Parent=MS.gene65934.t1
chr1.1 exon 26603650 26603791 26603650 ID=MS.gene65934.t1.exon2;Parent=MS.gene65934.t1
chr1.1 CDS 26603650 26603791 26603650 ID=cds.MS.gene65934.t1;Parent=MS.gene65934.t1
chr1.1 exon 26602871 26603068 26602871 ID=MS.gene65934.t1.exon3;Parent=MS.gene65934.t1
chr1.1 CDS 26602871 26603068 26602871 ID=cds.MS.gene65934.t1;Parent=MS.gene65934.t1
Gene Sequence

>MS.gene65934

ATGGAGAAACCCGGTGAAACAATCGCAGTAGTGTTATCGGCGAAGGAAGCATTCGAGAAGCTCGAGAAAGTTGGAGGAGGAACGTATGGGAAGGTTTACAGAGCAAGAGAGAAAGCTACTGGGAAGATTGTTGCGTTGAAGAAGACTCGTCTTCATGAAGATGATGAAGGTGTTCCTCCTACTACGCTTCGCGAGGTTTCGATTTTGCGTATGCTCTCTCATGATCCACATGTTGTTAGGTAAGTTAACCCTAAATTGTTTTCAATTTCAATTCAATTTCAATTGGATTTAAAATTAGGTTGATTTTGTGAATTTTGTTGGTGTTAGGTTGTTGGATGTGAAACAAGGACAGAACAAGGAAGGGAAAACTGTGTTGTATTTGGTTTTTGAGTATATGGATACTGATCTTAAGAAATTCATTCGGAGTTTTCGTCAAACTGGGCAAAATATTCCACCCCCAACCATCAAAGTATGTTAATTTCTTTTCAGATCTTCAAATTATTTGATTATTGTTGTTAGTTTTTTTTTTGCAATTAGTGTTAGTCTCCTTTTTTTAAAAAAAAAATAAAAAATTGGAGGTCTATTTTCTTTTTCCTTTTTTTTTTTAATTTCTTCCATTTTTTTAATTTCCTCCAATTTAAAAATGCCTGCAAGAATAAAAAAAAACTAAAAAAAAAAATATCCACGTGGCACCTAACTTAAGGGGTGTGGATGCCACGTCATCAACGACCAAGTCAAAAATGGACCAGGGGGCCAAAACTGCCAAAGATTCAATACTTAGGGGGCTGTTTTGTATTTAAATTAGTTAGGGGGCCATAACCGCAACTTTTGGAAAGTTAGGGGGCCAAAAGTGCAATTAAGCCTAATAAATATGCATGTGAAAATTTTGTAATAAAAAATTAGCATCAATTTAATAGTTTGCATCTTATGAAATCTTCTCAATTGAGTGGATAGTCCCTAGATTGTTTTGATAATTGCTAGGTTGTTGATCTCATTTATTTTCTTATGGAATAATCTTGTAGTAAATCATACCTGATGATCAATAGAAAGGTTAACAAGTGGTGGTGCCACTTCAATGTTGGTATCGACATAAGGAACTTTGAATTTAACATTGCTGGAAGGATTTTCATCTGGAGTTTCAATAATTGGAGGTGTAACCTCCACTTTCACATCGTCGGAAGTATTCTCAATTACATGTGGAGGAACCTCGACTTTGATATTCTCGGGATAATTCAAAATTTGAAGTGA
Protein sequence

>MS.gene65934.t1

MEKPGETIAVVLSAKEAFEKLEKVGGGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSHDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGQNIPPPTIKVNKWWCHFNVGIDIRNFEFNIAGRIFIWSFNNWRCNLHFHIVGSILNYMWRNLDFDILGIIQNLK