AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65941

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65941.t1 MTR_1g043050 79.444 180 31 1 1 180 81 254 1.37e-100 290
MS.gene65941.t1 MTR_1g043080 83.425 181 23 3 1 180 81 255 6.18e-94 273
MS.gene65941.t1 MTR_1g076150 53.804 184 75 4 1 180 81 258 5.06e-51 164
MS.gene65941.t1 MTR_1g076150 52.486 181 76 4 4 180 32 206 1.55e-47 154
MS.gene65941.t1 MTR_7g096930 35.610 205 100 6 1 180 81 278 9.97e-22 89.4
MS.gene65941.t1 MTR_7g115650 31.638 177 65 8 1 173 81 205 2.10e-16 73.9
MS.gene65941.t1 MTR_2g089620 71.795 39 11 0 1 39 81 119 2.21e-14 70.1
MS.gene65941.t1 MTR_8g031360 72.973 37 10 0 1 37 83 119 2.43e-14 69.7
MS.gene65941.t1 MTR_2g011660 72.973 37 10 0 1 37 82 118 2.56e-14 70.1
MS.gene65941.t1 MTR_7g076740 77.778 36 8 0 1 36 82 117 3.71e-14 69.3
MS.gene65941.t1 MTR_1g100653 77.778 36 8 0 1 36 81 116 4.67e-14 68.9
MS.gene65941.t1 MTR_0008s0390 31.977 172 92 6 1 164 82 236 6.07e-14 68.2
MS.gene65941.t1 MTR_4g082290 83.333 36 6 0 1 36 81 116 9.48e-14 68.6
MS.gene65941.t1 MTR_4g082230 83.333 36 6 0 1 36 81 116 9.66e-14 68.6
MS.gene65941.t1 MTR_4g478180 75.676 37 9 0 1 37 82 118 1.57e-13 67.8
MS.gene65941.t1 MTR_4g091490 70.270 37 11 0 1 37 82 118 1.68e-13 67.8
MS.gene65941.t1 MTR_3g083540 71.053 38 11 0 1 38 110 147 1.95e-13 67.0
MS.gene65941.t1 MTR_4g073420 68.421 38 12 0 1 38 81 118 2.33e-13 66.6
MS.gene65941.t1 MTR_5g079220 65.789 38 13 0 1 38 90 127 2.72e-13 66.6
MS.gene65941.t1 MTR_0251s0050 77.778 36 8 0 1 36 82 117 3.24e-13 66.2
MS.gene65941.t1 MTR_0008s0470 59.615 52 20 1 1 51 82 133 3.26e-13 66.6
MS.gene65941.t1 MTR_5g078910 67.568 37 12 0 1 37 76 112 3.30e-13 66.6
MS.gene65941.t1 MTR_5g079290 65.789 38 13 0 1 38 86 123 3.76e-13 65.9
MS.gene65941.t1 MTR_7g117730 73.684 38 10 0 1 38 81 118 3.77e-13 65.9
MS.gene65941.t1 MTR_6g055910 68.571 35 11 0 1 35 13 47 3.83e-13 65.5
MS.gene65941.t1 MTR_3g074520 71.053 38 11 0 1 38 81 118 4.39e-13 66.6
MS.gene65941.t1 MTR_4g065017 73.684 38 10 0 1 38 86 123 6.43e-13 65.9
MS.gene65941.t1 MTR_4g105130 72.973 37 10 0 1 37 81 117 6.54e-13 65.9
MS.gene65941.t1 MTR_3g097450 72.222 36 10 0 1 36 81 116 7.21e-13 65.5
MS.gene65941.t1 MTR_5g007370 70.270 37 11 0 1 37 81 117 7.91e-13 65.5
MS.gene65941.t1 MTR_2g089450 53.521 71 23 3 1 70 81 142 8.01e-13 65.1
MS.gene65941.t1 MTR_6g055910 68.571 35 11 0 1 35 54 88 1.11e-12 64.7
MS.gene65941.t1 MTR_1g085040 60.000 50 16 1 1 46 81 130 1.15e-12 65.5
MS.gene65941.t1 MTR_4g485530 64.865 37 13 0 1 37 81 117 1.37e-12 63.5
MS.gene65941.t1 MTR_1g085640 75.000 36 9 0 1 36 81 116 1.40e-12 65.1
MS.gene65941.t1 MTR_8g027345 72.222 36 10 0 1 36 81 116 1.53e-12 64.7
MS.gene65941.t1 MTR_2g097910 73.684 38 10 0 1 38 89 126 1.60e-12 64.7
MS.gene65941.t1 MTR_7g011170 75.000 36 9 0 1 36 81 116 2.18e-12 64.3
MS.gene65941.t1 MTR_6g055910 68.571 35 11 0 1 35 83 117 2.30e-12 63.9
MS.gene65941.t1 MTR_0197s0010 44.000 75 40 1 1 75 70 142 2.36e-12 63.5
MS.gene65941.t1 MTR_4g125520 61.224 49 14 1 1 44 81 129 2.81e-12 63.9
MS.gene65941.t1 MTR_7g110830 72.222 36 10 0 1 36 81 116 4.13e-12 63.9
MS.gene65941.t1 MTR_3g077110 70.270 37 11 0 1 37 81 117 4.26e-12 63.5
MS.gene65941.t1 MTR_0001s0360 63.158 38 14 0 1 38 76 113 4.69e-12 62.8
MS.gene65941.t1 MTR_1g100667 69.444 36 11 0 1 36 82 117 4.70e-12 63.2
MS.gene65941.t1 MTR_5g079670 59.459 37 15 0 1 37 80 116 5.23e-12 62.4
MS.gene65941.t1 MTR_4g100720 71.429 35 10 0 1 35 82 116 5.47e-12 61.6
MS.gene65941.t1 MTR_5g078800 64.865 37 13 0 1 37 76 112 5.53e-12 62.8
MS.gene65941.t1 MTR_2g089420 70.270 37 11 0 1 37 80 116 6.07e-12 63.5
MS.gene65941.t1 MTR_5g014990 48.649 74 30 3 1 72 82 149 6.10e-12 63.2
MS.gene65941.t1 MTR_4g102380 70.270 37 11 0 1 37 81 117 6.26e-12 62.8
MS.gene65941.t1 MTR_1g112760 67.568 37 12 0 1 37 82 118 1.02e-11 61.6
MS.gene65941.t1 MTR_3g028740 77.143 35 8 0 2 36 92 126 1.03e-11 62.4
MS.gene65941.t1 MTR_7g111290 38.843 121 53 5 1 105 39 154 1.23e-11 62.4
MS.gene65941.t1 MTR_8g095390 66.667 36 12 0 1 36 81 116 1.33e-11 62.0
MS.gene65941.t1 MTR_2g034790 45.312 64 28 2 1 57 81 144 1.49e-11 62.0
MS.gene65941.t1 MTR_5g029840 67.568 37 12 0 1 37 81 117 1.82e-11 61.6
MS.gene65941.t1 MTR_4g121460 35.714 84 41 1 1 71 81 164 1.83e-11 61.6
MS.gene65941.t1 MTR_7g111290 38.843 121 53 5 1 105 81 196 1.87e-11 62.0
MS.gene65941.t1 MTR_5g078860 62.162 37 14 0 1 37 76 112 2.58e-11 61.2
MS.gene65941.t1 MTR_1g017140 47.541 61 32 0 5 65 86 146 2.79e-11 61.2
MS.gene65941.t1 MTR_8g020490 72.222 36 10 0 1 36 77 112 3.00e-11 60.5
MS.gene65941.t1 MTR_7g010210 52.381 63 26 2 1 59 81 143 3.16e-11 61.2
MS.gene65941.t1 MTR_5g078140 72.222 36 10 0 1 36 81 116 3.23e-11 60.8
MS.gene65941.t1 MTR_4g063100 68.571 35 11 0 1 35 12 46 3.75e-11 59.3
MS.gene65941.t1 MTR_5g079120 64.865 37 13 0 1 37 130 166 4.58e-11 60.5
MS.gene65941.t1 MTR_7g017260 44.828 58 32 0 1 58 96 153 4.81e-11 60.1
MS.gene65941.t1 MTR_7g010210 69.444 36 11 0 1 36 81 116 5.07e-11 60.1
MS.gene65941.t1 MTR_4g063100 68.571 35 11 0 1 35 47 81 9.22e-11 58.9
MS.gene65941.t1 MTR_8g017390 56.098 41 18 0 1 41 82 122 9.38e-11 60.1
MS.gene65941.t1 MTR_3g039990 44.776 67 33 1 1 63 82 148 9.43e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65941.t1 AT3G23250 40.000 205 91 7 1 177 24 224 4.93e-30 110
MS.gene65941.t1 AT3G23250 40.000 205 91 7 1 177 81 281 3.71e-29 109
MS.gene65941.t1 AT1G06180 39.791 191 79 9 1 180 81 246 3.71e-23 92.8
MS.gene65941.t1 AT2G31180 38.503 187 90 7 1 180 81 249 1.98e-22 90.9
MS.gene65941.t1 AT3G61250 49.351 77 33 1 1 71 81 157 6.21e-17 77.0
MS.gene65941.t1 AT1G16490 57.895 57 23 1 1 56 83 139 9.85e-15 70.5
MS.gene65941.t1 AT4G05100 72.973 37 10 0 1 37 82 118 2.45e-14 70.1
MS.gene65941.t1 AT4G12350 78.378 37 8 0 1 37 81 117 4.88e-14 68.9
MS.gene65941.t1 AT1G16490 60.377 53 20 1 5 56 18 70 5.53e-14 67.4
MS.gene65941.t1 AT1G79180 39.130 115 61 4 1 112 83 191 6.30e-14 68.6
MS.gene65941.t1 AT4G21440 72.973 37 10 0 1 37 81 117 6.31e-14 68.9
MS.gene65941.t1 AT3G13540 72.973 37 10 0 1 37 92 128 7.87e-14 67.8
MS.gene65941.t1 AT1G79180 39.130 115 61 4 1 112 116 224 8.29e-14 68.6
MS.gene65941.t1 AT4G28110 65.000 40 14 0 1 40 81 120 1.26e-13 67.4
MS.gene65941.t1 AT5G54230 75.676 37 9 0 1 37 81 117 1.45e-13 67.8
MS.gene65941.t1 AT1G35515 71.053 38 11 0 1 38 81 118 1.51e-13 66.2
MS.gene65941.t1 AT1G22640 68.421 38 12 0 1 38 24 61 1.53e-13 66.2
MS.gene65941.t1 AT2G16720 71.053 38 11 0 1 38 81 118 1.54e-13 67.0
MS.gene65941.t1 AT5G35550 65.909 44 15 0 1 44 86 129 2.41e-13 66.6
MS.gene65941.t1 AT5G52600 63.043 46 17 0 1 46 81 126 2.79e-13 65.5
MS.gene65941.t1 AT5G35550 65.909 44 15 0 1 44 83 126 2.83e-13 66.2
MS.gene65941.t1 AT3G01140 78.378 37 8 0 1 37 81 117 3.32e-13 67.0
MS.gene65941.t1 AT4G09460 68.421 38 12 0 1 38 81 118 3.60e-13 65.9
MS.gene65941.t1 AT3G01140 78.378 37 8 0 1 37 124 160 3.73e-13 67.0
MS.gene65941.t1 AT5G15310 78.378 37 8 0 1 37 81 117 4.65e-13 66.2
MS.gene65941.t1 AT1G22640 68.421 38 12 0 1 38 81 118 5.18e-13 65.5
MS.gene65941.t1 AT5G16770 72.973 37 10 0 1 37 81 117 5.20e-13 66.2
MS.gene65941.t1 AT5G16770 72.973 37 10 0 1 37 81 117 5.20e-13 66.2
MS.gene65941.t1 AT5G15310 78.378 37 8 0 1 37 81 117 5.35e-13 66.2
MS.gene65941.t1 AT4G38620 65.789 38 13 0 1 38 81 118 5.40e-13 65.9
MS.gene65941.t1 AT5G16770 72.973 37 10 0 1 37 81 117 5.47e-13 66.2
MS.gene65941.t1 AT5G16770 72.973 37 10 0 1 37 81 117 5.47e-13 66.2
MS.gene65941.t1 AT5G62320 50.877 57 25 1 1 57 89 142 6.77e-13 65.1
MS.gene65941.t1 AT5G15310 78.378 37 8 0 1 37 81 117 7.27e-13 65.1
MS.gene65941.t1 AT5G14750 66.667 36 12 0 1 36 24 59 1.02e-12 62.8
MS.gene65941.t1 AT5G14750 66.667 36 12 0 1 36 24 59 1.02e-12 62.8
MS.gene65941.t1 AT4G34990 70.270 37 11 0 1 37 81 117 1.17e-12 64.7
MS.gene65941.t1 AT4G17785 70.270 37 11 0 1 37 82 118 1.23e-12 65.1
MS.gene65941.t1 AT4G17785 70.270 37 11 0 1 37 82 118 1.25e-12 65.5
MS.gene65941.t1 AT1G56160 80.000 35 7 0 2 36 84 118 1.65e-12 64.7
MS.gene65941.t1 AT1G18570 72.973 37 10 0 1 37 82 118 1.74e-12 64.7
MS.gene65941.t1 AT3G02940 67.568 37 12 0 1 37 81 117 2.06e-12 64.3
MS.gene65941.t1 AT3G02940 67.568 37 12 0 1 37 81 117 2.13e-12 64.3
MS.gene65941.t1 AT3G02940 67.568 37 12 0 1 37 81 117 2.13e-12 64.3
MS.gene65941.t1 AT5G10280 70.270 37 11 0 1 37 81 117 2.15e-12 64.3
MS.gene65941.t1 AT3G12820 70.270 37 11 0 1 37 35 71 2.25e-12 62.8
MS.gene65941.t1 AT5G65230 70.270 37 11 0 1 37 81 117 2.36e-12 64.3
MS.gene65941.t1 AT4G25560 62.791 43 16 0 1 43 13 55 2.69e-12 63.2
MS.gene65941.t1 AT5G14750 66.667 36 12 0 1 36 51 86 2.89e-12 62.0
MS.gene65941.t1 AT1G57560 67.568 37 12 0 1 37 81 117 2.91e-12 63.9
MS.gene65941.t1 AT3G27920 63.158 38 14 0 1 38 83 120 3.52e-12 62.8
MS.gene65941.t1 AT1G57560 67.568 37 12 0 1 37 81 117 3.89e-12 63.5
MS.gene65941.t1 AT3G12820 70.270 37 11 0 1 37 83 119 5.27e-12 62.8
MS.gene65941.t1 AT5G14750 66.667 36 12 0 1 36 85 120 5.46e-12 62.0
MS.gene65941.t1 AT1G09540 38.372 86 49 1 1 82 81 166 8.56e-12 62.8
MS.gene65941.t1 AT5G40330 66.667 36 12 0 1 36 81 116 9.14e-12 61.6
MS.gene65941.t1 AT1G34670 70.270 37 11 0 1 37 81 117 9.59e-12 62.8
MS.gene65941.t1 AT4G25560 62.791 43 16 0 1 43 79 121 9.83e-12 62.4
MS.gene65941.t1 AT4G01680 72.222 36 10 0 1 36 81 116 9.94e-12 62.0
MS.gene65941.t1 AT5G52260 66.667 39 13 0 1 39 81 119 9.95e-12 62.0
MS.gene65941.t1 AT4G01680 72.222 36 10 0 1 36 81 116 1.05e-11 62.4
MS.gene65941.t1 AT4G01680 72.222 36 10 0 1 36 93 128 1.17e-11 62.4
MS.gene65941.t1 AT5G12870 72.222 36 10 0 1 36 87 122 1.30e-11 62.0
MS.gene65941.t1 AT4G22680 70.270 37 11 0 1 37 81 117 1.43e-11 61.6
MS.gene65941.t1 AT3G08500 72.222 36 10 0 1 36 99 134 1.48e-11 62.0
MS.gene65941.t1 AT4G28110 75.000 32 8 0 8 39 4 35 2.00e-11 60.5
MS.gene65941.t1 AT5G16600 72.222 36 10 0 1 36 81 116 2.77e-11 61.2
MS.gene65941.t1 AT1G74650 67.568 37 12 0 1 37 5 41 3.20e-11 60.5
MS.gene65941.t1 AT5G59780 68.571 35 11 0 1 35 12 46 3.30e-11 59.3
MS.gene65941.t1 AT1G66230 72.222 36 10 0 1 36 81 116 3.38e-11 60.8
MS.gene65941.t1 AT3G28910 61.905 42 16 0 1 42 5 46 3.71e-11 60.5
MS.gene65941.t1 AT5G49330 66.667 36 12 0 1 36 81 116 3.85e-11 60.8
MS.gene65941.t1 AT3G46130 68.571 35 11 0 1 35 12 46 4.24e-11 59.3
MS.gene65941.t1 AT4G13480 47.458 59 25 1 1 59 75 127 4.61e-11 60.1
MS.gene65941.t1 AT5G61420 67.568 37 12 0 1 37 2 38 5.16e-11 60.5
MS.gene65941.t1 AT1G71030 62.162 37 14 0 1 37 35 71 6.06e-11 58.9
MS.gene65941.t1 AT5G26660 69.444 36 11 0 1 36 50 85 6.50e-11 60.1
MS.gene65941.t1 AT5G65790 65.789 38 13 0 1 38 82 119 6.73e-11 60.5
MS.gene65941.t1 AT3G30210 55.556 54 17 1 1 54 96 142 6.81e-11 60.1
MS.gene65941.t1 AT3G47600 58.696 46 19 0 1 46 75 120 7.09e-11 60.1
MS.gene65941.t1 AT2G47460 65.789 38 13 0 1 38 81 118 7.30e-11 60.1
MS.gene65941.t1 AT5G62470 65.000 40 14 0 1 40 80 119 7.36e-11 60.1
MS.gene65941.t1 AT1G71030 62.162 37 14 0 1 37 49 85 7.43e-11 58.9
MS.gene65941.t1 AT5G62470 65.000 40 14 0 1 40 81 120 7.89e-11 60.1
MS.gene65941.t1 AT1G74650 67.568 37 12 0 1 37 81 117 8.36e-11 60.1
MS.gene65941.t1 AT5G59780 68.571 35 11 0 1 35 56 90 8.99e-11 58.9
MS.gene65941.t1 AT3G47600 63.415 41 15 0 1 41 81 121 9.02e-11 59.7

Find 21 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTGGTTGGTTATTAT+TGG 0.184906 1.1:+26931659 None:intergenic
CGTCATTATCAAAAGGGTTT+TGG 0.211007 1.1:+26931322 None:intergenic
CAAAAGCTTTCATCAATTTC+AGG 0.250594 1.1:+26931459 None:intergenic
ATTTCATTGTCTGTTCTTCC+AGG 0.291634 1.1:+26931726 None:intergenic
CTGAAATTGATGAAAGCTTT+TGG 0.299877 1.1:-26931458 MS.gene65941:CDS
GAAACTGTCATAGGATTTGA+TGG 0.346331 1.1:+26931396 None:intergenic
AATTCATTTGAAACTGTCAT+AGG 0.356516 1.1:+26931387 None:intergenic
AGCTTCCATTGAGTTGGAAT+TGG 0.389117 1.1:+26931584 None:intergenic
CATGAAAATGTTTAGAACTC+TGG 0.425811 1.1:+26931243 None:intergenic
TATAACGTGTTCATCAAATC+AGG 0.457240 1.1:-26931282 MS.gene65941:CDS
ATGCCATCGTCATTATCAAA+AGG 0.461830 1.1:+26931315 None:intergenic
TGCATGAGTTGCTAGGGAAC+AGG 0.464920 1.1:-26932232 MS.gene65941:intron
ATTGTCACAAAAGAGTCTTC+AGG 0.488694 1.1:+26931483 None:intergenic
AAATGCCAATTCCAACTCAA+TGG 0.490366 1.1:-26931589 MS.gene65941:CDS
TGCCATCGTCATTATCAAAA+GGG 0.500463 1.1:+26931316 None:intergenic
ATTAAGATGCATGAGTTGCT+AGG 0.510133 1.1:-26932239 None:intergenic
TTGTCACAAAAGAGTCTTCA+GGG 0.515022 1.1:+26931484 None:intergenic
TGATGTAGCTTCCATTGAGT+TGG 0.515373 1.1:+26931578 None:intergenic
GCAATAGCAGCAAAATTACC+TGG 0.544673 1.1:-26931744 MS.gene65941:CDS
TTAAGATGCATGAGTTGCTA+GGG 0.559460 1.1:-26932238 None:intergenic
CATAGGATTTGATGGCATGT+TGG 0.581215 1.1:+26931404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAATATATAGTTTAT+TGG + chr1.1:26931371-26931390 None:intergenic 10.0%
!! TTAAAAATATATTGTTGATC+TGG + chr1.1:26932127-26932146 None:intergenic 15.0%
!!! TTTTTTTTGAGAAATCAATA+TGG + chr1.1:26931569-26931588 None:intergenic 15.0%
!! ACAATGAAATAAAAAATGTG+TGG - chr1.1:26931774-26931793 MS.gene65941:intron 20.0%
!!! TTGTTTTGATACTCTTTTTT+TGG + chr1.1:26931858-26931877 None:intergenic 20.0%
! ACATGAAAATTACATGAGAA+TGG - chr1.1:26931396-26931415 MS.gene65941:CDS 25.0%
!! AATTCATTTGAAACTGTCAT+AGG + chr1.1:26932103-26932122 None:intergenic 25.0%
!! TCTAGTAATTTTTCATCACA+AGG - chr1.1:26931947-26931966 MS.gene65941:intron 25.0%
!!! CTTTTTTTGGTATTTGAACT+TGG + chr1.1:26931845-26931864 None:intergenic 25.0%
!!! TTCTGATTTTTGTTTTCAGA+TGG - chr1.1:26931717-26931736 MS.gene65941:CDS 25.0%
CAAAAGCTTTCATCAATTTC+AGG + chr1.1:26932031-26932050 None:intergenic 30.0%
GAAAATTACATGAGAATGGA+AGG - chr1.1:26931400-26931419 MS.gene65941:CDS 30.0%
TATAACGTGTTCATCAAATC+AGG - chr1.1:26932205-26932224 MS.gene65941:intron 30.0%
TGTAATTACAGATCTCTAGT+AGG - chr1.1:26931463-26931482 MS.gene65941:CDS 30.0%
! CTGAAATTGATGAAAGCTTT+TGG - chr1.1:26932029-26932048 MS.gene65941:intron 30.0%
! TGAACTTGGTTGGTTATTAT+TGG + chr1.1:26931831-26931850 None:intergenic 30.0%
! TTTTGGTATTTGAACTTGGT+TGG + chr1.1:26931841-26931860 None:intergenic 30.0%
!! GAACGACTTTGATTTGAAAA+AGG + chr1.1:26931300-26931319 None:intergenic 30.0%
AAATGCCAATTCCAACTCAA+TGG - chr1.1:26931898-26931917 MS.gene65941:intron 35.0%
AAGCTGTAAACTTTGTTCAG+TGG - chr1.1:26931492-26931511 MS.gene65941:CDS 35.0%
ATGCCATCGTCATTATCAAA+AGG + chr1.1:26932175-26932194 None:intergenic 35.0%
ATTGTCACAAAAGAGTCTTC+AGG + chr1.1:26932007-26932026 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1.1:26931764-26931783 None:intergenic 35.0%
GAAACTGTCATAGGATTTGA+TGG + chr1.1:26932094-26932113 None:intergenic 35.0%
TGCCATCGTCATTATCAAAA+GGG + chr1.1:26932174-26932193 None:intergenic 35.0%
TTGTCACAAAAGAGTCTTCA+GGG + chr1.1:26932006-26932025 None:intergenic 35.0%
! CGTCATTATCAAAAGGGTTT+TGG + chr1.1:26932168-26932187 None:intergenic 35.0%
! GAGATTCGAATTTTGCTTCT+TGG + chr1.1:26931688-26931707 None:intergenic 35.0%
!!! AACCCTTTTGATAATGACGA+TGG - chr1.1:26932169-26932188 MS.gene65941:intron 35.0%
!!! TTTTGATAATGACGATGGCA+TGG - chr1.1:26932174-26932193 MS.gene65941:intron 35.0%
ACAGTGAAACTCCATGCATA+AGG + chr1.1:26931531-26931550 None:intergenic 40.0%
ATGAGAATGGAAGGTAATCG+AGG - chr1.1:26931409-26931428 MS.gene65941:CDS 40.0%
GCAATAGCAGCAAAATTACC+TGG - chr1.1:26931743-26931762 MS.gene65941:CDS 40.0%
TGATGTAGCTTCCATTGAGT+TGG + chr1.1:26931912-26931931 None:intergenic 40.0%
! ATGACGATGGCATGGATTTT+TGG - chr1.1:26932182-26932201 MS.gene65941:intron 40.0%
! CATAGGATTTGATGGCATGT+TGG + chr1.1:26932086-26932105 None:intergenic 40.0%
!! AGCTTCCATTGAGTTGGAAT+TGG + chr1.1:26931906-26931925 None:intergenic 40.0%
CTCTTTGCACTCCTTATGCA+TGG - chr1.1:26931517-26931536 MS.gene65941:CDS 45.0%
TGCATGAGTTGCTAGGGAAC+AGG - chr1.1:26931255-26931274 MS.gene65941:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 26931254 26932255 26931254 ID=MS.gene65941
chr1.1 mRNA 26931254 26932255 26931254 ID=MS.gene65941.t1;Parent=MS.gene65941
chr1.1 exon 26932233 26932255 26932233 ID=MS.gene65941.t1.exon1;Parent=MS.gene65941.t1
chr1.1 CDS 26932233 26932255 26932233 ID=cds.MS.gene65941.t1;Parent=MS.gene65941.t1
chr1.1 exon 26931254 26931773 26931254 ID=MS.gene65941.t1.exon2;Parent=MS.gene65941.t1
chr1.1 CDS 26931254 26931773 26931254 ID=cds.MS.gene65941.t1;Parent=MS.gene65941.t1
Gene Sequence

>MS.gene65941

ATGCATGAGTTGCTAGGGAACAGGTACATTTGTTCATTTGCTTCCTTTTTCAAATCAAAGTCGTTCATCATTTGTGATTTTCTTATCATTAAATAATATTATACTAAACAATGACCAATAAACTATATATTGATATTTATATACATGAAAATTACATGAGAATGGAAGGTAATCGAGGAACTAAGCATTGATTTGAAGTATCAACTACATGTAATTACAGATCTCTAGTAGGACTTTGAAGCTGTAAACTTTGTTCAGTGGTGCTCTTTGCACTCCTTATGCATGGAGTTTCACTGTTGTTTTATATATATTCCATATTGATTTCTCAAAAAAAAAAACTACATGCAATTACAATATATTTATATATTATTGACATACATAGCACTATGCATGAATACAATCAAAATTTGTTGTTTTCTCAATAACTTTATCCAAGAAGCAAAATTCGAATCTCATACATTAATTCTGATTTTTGTTTTCAGATGGTCAGCAATAGCAGCAAAATTACCTGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACTCACTTGAAGAAAAGATTGTTGAATACCAATAATAACCAACCAAGTTCAAATACCAAAAAAAGAGTATCAAAACAAAAAATCAAAAGATATGATTCAAATGCCAATTCCAACTCAATGGAAGCTACATCATCAAATTGCACTTTTTCTAGTAATTTTTCATCACAAGGAAGAAATGTTGACAACATCATCAATTGTGAAGACCCTGAAGACTCTTTTGTGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGAAAATAAATGATGACGAAATTAGCTCCAACATGCCATCAAATCCTATGACAGTTTCAAATGAATTACCAGATCAACAATATATTTTTAATAATTCAGTAGAAAATTTCCAAAACCCTTTTGATAATGACGATGGCATGGATTTTTGGTATAACGTGTTCATCAAATCAGGAGAATCAACAGAATTGCCAGAGTTCTAA
Protein sequence

>MS.gene65941.t1

MHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTNNNQPSSNTKKRVSKQKIKRYDSNANSNSMEATSSNCTFSSNFSSQGRNVDNIINCEDPEDSFVTMPEIDESFWSEKINDDEISSNMPSNPMTVSNELPDQQYIFNNSVENFQNPFDNDDGMDFWYNVFIKSGESTELPEF