Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66130.t1 | KEH15972.1 | 56.6 | 83 | 16 | 1 | 40 | 102 | 73 | 155 | 6.10E-10 | 73.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66130.t1 | Q6S4P4 | 76.6 | 47 | 11 | 0 | 78 | 124 | 139 | 185 | 5.8e-09 | 62.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66130.t1 | A0A072TF27 | 56.6 | 83 | 16 | 1 | 40 | 102 | 73 | 155 | 4.4e-10 | 73.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene66130.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66130.t1 | MTR_0405s0060 | 55.952 | 84 | 17 | 1 | 39 | 102 | 72 | 155 | 2.53e-19 | 80.5 |
MS.gene66130.t1 | MTR_4g072090 | 86.364 | 44 | 6 | 0 | 78 | 121 | 367 | 410 | 1.30e-16 | 75.1 |
MS.gene66130.t1 | MTR_4g072090 | 86.364 | 44 | 6 | 0 | 78 | 121 | 367 | 410 | 1.44e-16 | 75.1 |
MS.gene66130.t1 | MTR_2g099050 | 76.596 | 47 | 11 | 0 | 78 | 124 | 228 | 274 | 4.04e-15 | 70.9 |
MS.gene66130.t1 | MTR_5g075390 | 69.811 | 53 | 16 | 0 | 78 | 130 | 166 | 218 | 3.14e-14 | 68.2 |
MS.gene66130.t1 | MTR_3g467120 | 76.596 | 47 | 11 | 0 | 78 | 124 | 184 | 230 | 6.03e-14 | 67.4 |
MS.gene66130.t1 | MTR_6g034945 | 74.468 | 47 | 12 | 0 | 78 | 124 | 158 | 204 | 1.22e-13 | 66.2 |
MS.gene66130.t1 | MTR_5g024180 | 73.684 | 38 | 8 | 1 | 31 | 68 | 74 | 109 | 4.48e-12 | 59.7 |
MS.gene66130.t1 | MTR_5g024180 | 73.684 | 38 | 8 | 1 | 31 | 68 | 37 | 72 | 4.51e-12 | 58.5 |
MS.gene66130.t1 | MTR_3g094020 | 68.085 | 47 | 15 | 0 | 78 | 124 | 115 | 161 | 1.85e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66130.t1 | AT4G38900 | 80.851 | 47 | 9 | 0 | 75 | 121 | 404 | 450 | 4.68e-16 | 73.6 |
MS.gene66130.t1 | AT4G38900 | 84.091 | 44 | 7 | 0 | 78 | 121 | 401 | 444 | 9.95e-16 | 72.8 |
MS.gene66130.t1 | AT4G38900 | 84.091 | 44 | 7 | 0 | 78 | 121 | 401 | 444 | 9.95e-16 | 72.8 |
MS.gene66130.t1 | AT1G06850 | 75.000 | 48 | 12 | 0 | 78 | 125 | 155 | 202 | 1.59e-15 | 70.5 |
MS.gene66130.t1 | AT1G43700 | 57.971 | 69 | 21 | 1 | 64 | 124 | 179 | 247 | 3.99e-15 | 70.5 |
MS.gene66130.t1 | AT1G06070 | 76.596 | 47 | 11 | 0 | 78 | 124 | 217 | 263 | 8.15e-15 | 70.1 |
MS.gene66130.t1 | AT1G06850 | 74.468 | 47 | 12 | 0 | 78 | 124 | 155 | 201 | 1.04e-13 | 66.6 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.83e-13 | 66.2 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.83e-13 | 66.2 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.83e-13 | 66.2 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.83e-13 | 66.2 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.83e-13 | 66.2 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.83e-13 | 66.2 |
MS.gene66130.t1 | AT2G31370 | 69.811 | 53 | 16 | 0 | 78 | 130 | 208 | 260 | 1.89e-13 | 66.2 |
MS.gene66130.t1 | AT2G21230 | 65.455 | 55 | 19 | 0 | 67 | 121 | 366 | 420 | 3.79e-13 | 65.5 |
MS.gene66130.t1 | AT2G40620 | 66.038 | 53 | 18 | 0 | 78 | 130 | 155 | 207 | 6.11e-13 | 64.7 |
MS.gene66130.t1 | AT2G21230 | 65.455 | 55 | 19 | 0 | 67 | 121 | 366 | 420 | 9.55e-13 | 64.3 |
MS.gene66130.t1 | AT2G21230 | 65.455 | 55 | 19 | 0 | 67 | 121 | 366 | 420 | 9.55e-13 | 64.3 |
MS.gene66130.t1 | AT2G21230 | 65.455 | 55 | 19 | 0 | 67 | 121 | 366 | 420 | 9.57e-13 | 64.3 |
Find 16 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAATGCGTGCTTACAATA+TGG | 0.281097 | 3.2:-47317095 | MS.gene66130:CDS |
TGCACAACTTACTTTGTTGC+AGG | 0.290633 | 3.2:-47316608 | MS.gene66130:CDS |
AGAAATCCGATTATGTTTGC+AGG | 0.399917 | 3.2:+47317561 | None:intergenic |
AATACCCCTGCAAACATAAT+CGG | 0.426347 | 3.2:-47317567 | MS.gene66130:CDS |
ATAATCGGATTTCTGATGAA+TGG | 0.444208 | 3.2:-47317552 | MS.gene66130:CDS |
GCGCAAGATGCAATACATTT+CGG | 0.446357 | 3.2:-47316680 | MS.gene66130:CDS |
ACAATGCGTGCTTACAATAT+GGG | 0.459061 | 3.2:-47317094 | MS.gene66130:CDS |
TTCGCAGCCTTAGCAATGAA+TGG | 0.505966 | 3.2:+47317139 | None:intergenic |
ACAACTTACTTTGTTGCAGG+TGG | 0.538284 | 3.2:-47316605 | MS.gene66130:CDS |
GAAATCCGATTATGTTTGCA+GGG | 0.552774 | 3.2:+47317562 | None:intergenic |
CATTTCGGAGCTAGAACAGA+AGG | 0.562989 | 3.2:-47316665 | MS.gene66130:CDS |
TAAGGCTCCATTCATTGCTA+AGG | 0.574542 | 3.2:-47317146 | MS.gene66130:CDS |
CAACTTACTTTGTTGCAGGT+GGG | 0.580671 | 3.2:-47316604 | MS.gene66130:CDS |
TAAGGCTGCGAAGTTGAAAG+AGG | 0.615696 | 3.2:-47317128 | MS.gene66130:CDS |
AAGTTGTGCAGAAAGTGTAG+TGG | 0.665732 | 3.2:+47316621 | None:intergenic |
AAATCCGATTATGTTTGCAG+GGG | 0.668815 | 3.2:+47317563 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCGTTGAATTTATTTTT+AGG | - | chr3.2:47317446-47317465 | MS.gene66130:intron | 15.0% |
!! | GAGATTATAGGTAATAAAAT+TGG | + | chr3.2:47316889-47316908 | None:intergenic | 20.0% |
!! | GATTTGAATAATCAATTGAT+AGG | + | chr3.2:47317211-47317230 | None:intergenic | 20.0% |
!! | TTTAGTTAGTAATGTCAATA+TGG | - | chr3.2:47318045-47318064 | MS.gene66130:intron | 20.0% |
!!! | AAAAATTGTAAAAGTACATG+TGG | + | chr3.2:47316596-47316615 | None:intergenic | 20.0% |
!!! | ATTTTTTTTTGGGTTATTTC+AGG | - | chr3.2:47318088-47318107 | MS.gene66130:intron | 20.0% |
!!! | GTAAATCGATTTTCATATAA+TGG | + | chr3.2:47317393-47317412 | None:intergenic | 20.0% |
!!! | TATAAAGGTTGAATTAGTTT+AGG | - | chr3.2:47317556-47317575 | MS.gene66130:CDS | 20.0% |
!!! | TGACTTGGATATTTTTTTTT+GGG | - | chr3.2:47318078-47318097 | MS.gene66130:intron | 20.0% |
!!! | TGTACTTTTACAATTTTTCA+AGG | - | chr3.2:47316598-47316617 | MS.gene66130:CDS | 20.0% |
!!! | TTGACTTGGATATTTTTTTT+TGG | - | chr3.2:47318077-47318096 | MS.gene66130:intron | 20.0% |
!!! | TTGTGATTTATGTGTATTTT+AGG | - | chr3.2:47317659-47317678 | MS.gene66130:intron | 20.0% |
!!! | TTTATGTGTATTTTAGGATA+AGG | - | chr3.2:47317665-47317684 | MS.gene66130:intron | 20.0% |
! | AGAATACAGATACAACTAAT+TGG | - | chr3.2:47316796-47316815 | MS.gene66130:intron | 25.0% |
! | GTAATAAAATTGGAACAAAG+AGG | + | chr3.2:47316879-47316898 | None:intergenic | 25.0% |
! | TAGCTTAGGATTAGATAATA+AGG | + | chr3.2:47316629-47316648 | None:intergenic | 25.0% |
! | TTCGGAATTGAAGAAAATTA+TGG | - | chr3.2:47317945-47317964 | MS.gene66130:intron | 25.0% |
! | TTTACTTCTCTTATGTTACT+TGG | - | chr3.2:47317798-47317817 | MS.gene66130:intron | 25.0% |
!! | AATTTTCTTCAATGAAACAG+AGG | + | chr3.2:47317599-47317618 | None:intergenic | 25.0% |
!! | GAGTTTTCTAACGTAATTTA+CGG | - | chr3.2:47317486-47317505 | MS.gene66130:intron | 25.0% |
!!! | AATCGATTTTCATATAATGG+AGG | + | chr3.2:47317390-47317409 | None:intergenic | 25.0% |
!!! | TTTTGTTTACATTGTAGCTT+AGG | + | chr3.2:47316643-47316662 | None:intergenic | 25.0% |
AAGGAATGGAATGGATATAA+AGG | - | chr3.2:47317541-47317560 | MS.gene66130:CDS | 30.0% | |
ATAATCGGATTTCTGATGAA+TGG | - | chr3.2:47317277-47317296 | MS.gene66130:intron | 30.0% | |
ATTGAAAGAAGAACATGTCT+CGG | + | chr3.2:47316828-47316847 | None:intergenic | 30.0% | |
ATTTACGGTGAATTTGAACT+AGG | - | chr3.2:47317501-47317520 | MS.gene66130:intron | 30.0% | |
GTTAGTAATGTCAATATGGA+TGG | - | chr3.2:47318049-47318068 | MS.gene66130:intron | 30.0% | |
TACCTGAAAAACGTGATTAT+AGG | + | chr3.2:47317307-47317326 | None:intergenic | 30.0% | |
TTCAGGTAAGCAATTGTAAA+CGG | - | chr3.2:47317319-47317338 | MS.gene66130:intron | 30.0% | |
! | TATGGATGGTTAATTTGACT+TGG | - | chr3.2:47318063-47318082 | MS.gene66130:intron | 30.0% |
! | TTCCTATAATCACGTTTTTC+AGG | - | chr3.2:47317302-47317321 | MS.gene66130:intron | 30.0% |
!! | AAATCGATTTACCGTTTTTG+TGG | - | chr3.2:47317401-47317420 | MS.gene66130:intron | 30.0% |
!! | ATTTCAGGATTTTGAGAAAC+AGG | - | chr3.2:47318103-47318122 | MS.gene66130:intron | 30.0% |
AAATCCGATTATGTTTGCAG+GGG | + | chr3.2:47317269-47317288 | None:intergenic | 35.0% | |
AATACCCCTGCAAACATAAT+CGG | - | chr3.2:47317262-47317281 | MS.gene66130:intron | 35.0% | |
AATTGGAACAAAGAGGAAAG+AGG | + | chr3.2:47316872-47316891 | None:intergenic | 35.0% | |
ACAATGCGTGCTTACAATAT+GGG | - | chr3.2:47317735-47317754 | MS.gene66130:intron | 35.0% | |
AGAAATCCGATTATGTTTGC+AGG | + | chr3.2:47317271-47317290 | None:intergenic | 35.0% | |
CACAAAACTCACCACAAAAA+CGG | + | chr3.2:47317415-47317434 | None:intergenic | 35.0% | |
CAGAGTTAGTGAGAAATTGT+GGG | + | chr3.2:47316750-47316769 | None:intergenic | 35.0% | |
GAAAAGTGAAAACCCAGAAT+TGG | + | chr3.2:47317162-47317181 | None:intergenic | 35.0% | |
GAAAGTTGCTGAGATTGTTA+TGG | - | chr3.2:47317975-47317994 | MS.gene66130:intron | 35.0% | |
GAAATCCGATTATGTTTGCA+GGG | + | chr3.2:47317270-47317289 | None:intergenic | 35.0% | |
TTAGACTGAGAAGAATGCTT+CGG | - | chr3.2:47317863-47317882 | MS.gene66130:intron | 35.0% | |
TTGAACTAGGTTAGGAAAGT+TGG | - | chr3.2:47317514-47317533 | MS.gene66130:intron | 35.0% | |
!! | GATTTTGAGAAACAGGCAAT+CGG | - | chr3.2:47318110-47318129 | MS.gene66130:intron | 35.0% |
AACTAGGTTAGGAAAGTTGG+TGG | - | chr3.2:47317517-47317536 | MS.gene66130:intron | 40.0% | |
ACAACTTACTTTGTTGCAGG+TGG | - | chr3.2:47318224-47318243 | MS.gene66130:intron | 40.0% | |
AGAGAAAAGAGAGAGAGAGT+GGG | + | chr3.2:47316919-47316938 | None:intergenic | 40.0% | |
AGTTAGTGAGAAATTGTGGG+AGG | + | chr3.2:47316747-47316766 | None:intergenic | 40.0% | |
ATCGAAGAGTCTTCCAATTC+TGG | - | chr3.2:47317146-47317165 | MS.gene66130:CDS | 40.0% | |
CAACTTACTTTGTTGCAGGT+GGG | - | chr3.2:47318225-47318244 | MS.gene66130:intron | 40.0% | |
CGGTGAATTTGAACTAGGTT+AGG | - | chr3.2:47317506-47317525 | MS.gene66130:intron | 40.0% | |
GACAATGCGTGCTTACAATA+TGG | - | chr3.2:47317734-47317753 | MS.gene66130:intron | 40.0% | |
GCAGAGTTAGTGAGAAATTG+TGG | + | chr3.2:47316751-47316770 | None:intergenic | 40.0% | |
GCGCAAGATGCAATACATTT+CGG | - | chr3.2:47318149-47318168 | MS.gene66130:intron | 40.0% | |
GTGGGAAGAAGAGAGATTAT+AGG | + | chr3.2:47316901-47316920 | None:intergenic | 40.0% | |
GTTAGTGAGAAATTGTGGGA+GGG | + | chr3.2:47316746-47316765 | None:intergenic | 40.0% | |
TAAGGCTCCATTCATTGCTA+AGG | - | chr3.2:47317683-47317702 | MS.gene66130:intron | 40.0% | |
TCGAAGAGTCTTCCAATTCT+GGG | - | chr3.2:47317147-47317166 | MS.gene66130:CDS | 40.0% | |
TGCACAACTTACTTTGTTGC+AGG | - | chr3.2:47318221-47318240 | MS.gene66130:intron | 40.0% | |
TTAGTGAGAAATTGTGGGAG+GGG | + | chr3.2:47316745-47316764 | None:intergenic | 40.0% | |
! | AAGTTGTGCAGAAAGTGTAG+TGG | + | chr3.2:47318211-47318230 | None:intergenic | 40.0% |
! | ATTTTTCCCGCTCAAATGCT+AGG | + | chr3.2:47316681-47316700 | None:intergenic | 40.0% |
!! | CACATATGATGGTGGTGATA+CGG | + | chr3.2:47316998-47317017 | None:intergenic | 40.0% |
!! | GCAAGAAGAAAGTGTTGTGT+TGG | + | chr3.2:47317087-47317106 | None:intergenic | 40.0% |
AAGAATGCTTCGGAGGAAGA+AGG | - | chr3.2:47317873-47317892 | MS.gene66130:intron | 45.0% | |
AGCTGAAATGCTTGGTTGTG+AGG | + | chr3.2:47317043-47317062 | None:intergenic | 45.0% | |
CATTTCGGAGCTAGAACAGA+AGG | - | chr3.2:47318164-47318183 | MS.gene66130:intron | 45.0% | |
CCCTAATCCTAGCATTTGAG+CGG | - | chr3.2:47316671-47316690 | MS.gene66130:CDS | 45.0% | |
CCGCTCAAATGCTAGGATTA+GGG | + | chr3.2:47316674-47316693 | None:intergenic | 45.0% | |
CCTAATCCTAGCATTTGAGC+GGG | - | chr3.2:47316672-47316691 | MS.gene66130:CDS | 45.0% | |
CGTATCACCACCATCATATG+TGG | - | chr3.2:47316996-47317015 | MS.gene66130:intron | 45.0% | |
CTCTGCATTAATTGCACACG+CGG | - | chr3.2:47316765-47316784 | MS.gene66130:intron | 45.0% | |
GAGAGAAAAGAGAGAGAGAG+TGG | + | chr3.2:47316920-47316939 | None:intergenic | 45.0% | |
GGAACAAAGAGGAAAGAGGT+TGG | + | chr3.2:47316868-47316887 | None:intergenic | 45.0% | |
TAAGGCTGCGAAGTTGAAAG+AGG | - | chr3.2:47317701-47317720 | MS.gene66130:intron | 45.0% | |
TGTGAGGAAATAGTCAGAGC+TGG | + | chr3.2:47317027-47317046 | None:intergenic | 45.0% | |
TTCGCAGCCTTAGCAATGAA+TGG | + | chr3.2:47317693-47317712 | None:intergenic | 45.0% | |
TTGTTATGGCTGATCCGAAG+CGG | - | chr3.2:47317989-47318008 | MS.gene66130:intron | 45.0% | |
! | GTTGGTGGAAAGGAATGGAA+TGG | - | chr3.2:47317532-47317551 | MS.gene66130:CDS | 45.0% |
!! | ATATGATGGTGGTGATACGG+CGG | + | chr3.2:47316995-47317014 | None:intergenic | 45.0% |
!! | GGAAAGTTGGTGGAAAGGAA+TGG | - | chr3.2:47317527-47317546 | MS.gene66130:intron | 45.0% |
!! | GGTTAGGAAAGTTGGTGGAA+AGG | - | chr3.2:47317522-47317541 | MS.gene66130:intron | 45.0% |
CAACTGCACCATCACCCTAT+CGG | - | chr3.2:47316965-47316984 | MS.gene66130:intron | 50.0% | |
CCCGCTCAAATGCTAGGATT+AGG | + | chr3.2:47316675-47316694 | None:intergenic | 50.0% | |
GACTGAGAAGAATGCTTCGG+AGG | - | chr3.2:47317866-47317885 | MS.gene66130:intron | 50.0% | |
GGAATCAAAGACAGCAGCTG+CGG | + | chr3.2:47317066-47317085 | None:intergenic | 50.0% | |
TGTTATGGCTGATCCGAAGC+GGG | - | chr3.2:47317990-47318009 | MS.gene66130:intron | 50.0% | |
AGCTGCGGAGCTGAAATGCT+TGG | + | chr3.2:47317051-47317070 | None:intergenic | 55.0% | |
CAACACCTCTTTGCCCGCTT+CGG | + | chr3.2:47318006-47318025 | None:intergenic | 55.0% | |
! | GGTGCTGCCACATATGATGG+TGG | + | chr3.2:47317006-47317025 | None:intergenic | 55.0% |
!! | GCTGGTGCTGCCACATATGA+TGG | + | chr3.2:47317009-47317028 | None:intergenic | 55.0% |
CTGATCCGAAGCGGGCAAAG+AGG | - | chr3.2:47317998-47318017 | MS.gene66130:intron | 60.0% | |
GATACGGCGGAGCTCCGATA+GGG | + | chr3.2:47316982-47317001 | None:intergenic | 60.0% | |
TGATACGGCGGAGCTCCGAT+AGG | + | chr3.2:47316983-47317002 | None:intergenic | 60.0% | |
GCGGAGCTCCGATAGGGTGA+TGG | + | chr3.2:47316976-47316995 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 47316570 | 47318281 | 47316570 | ID=MS.gene66130 |
chr3.2 | mRNA | 47316570 | 47318281 | 47316570 | ID=MS.gene66130.t1;Parent=MS.gene66130 |
chr3.2 | exon | 47318253 | 47318281 | 47318253 | ID=MS.gene66130.t1.exon1;Parent=MS.gene66130.t1 |
chr3.2 | CDS | 47318253 | 47318281 | 47318253 | ID=cds.MS.gene66130.t1;Parent=MS.gene66130.t1 |
chr3.2 | exon | 47317528 | 47317618 | 47317528 | ID=MS.gene66130.t1.exon2;Parent=MS.gene66130.t1 |
chr3.2 | CDS | 47317528 | 47317618 | 47317528 | ID=cds.MS.gene66130.t1;Parent=MS.gene66130.t1 |
chr3.2 | exon | 47317061 | 47317170 | 47317061 | ID=MS.gene66130.t1.exon3;Parent=MS.gene66130.t1 |
chr3.2 | CDS | 47317061 | 47317170 | 47317061 | ID=cds.MS.gene66130.t1;Parent=MS.gene66130.t1 |
chr3.2 | exon | 47316570 | 47316741 | 47316570 | ID=MS.gene66130.t1.exon4;Parent=MS.gene66130.t1 |
chr3.2 | CDS | 47316570 | 47316741 | 47316570 | ID=cds.MS.gene66130.t1;Parent=MS.gene66130.t1 |
Gene Sequence |
Protein sequence |