AlfalfaGEDB | MS.gene66170

M. sativa cultivar XinJiangDaYe / MS.gene66170

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66170.t1	XP_003600259.1	98	595	12	0	1	595	1	595	0.00E+00	1163.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66170.t1	Q93WV0	50.3	587	252	14	15	595	5	557	7.8e-130	465.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66170.t1	G7J209	98.0	595	12	0	1	595	1	595	0.0e+00	1163.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene66170.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66170.t1	MTR_3g056100	97.983	595	12	0	1	595	1	595	0.0	1209
MS.gene66170.t1	MTR_3g056100	96.134	595	10	1	1	595	1	582	0.0	1175
MS.gene66170.t1	MTR_3g056100	98.004	451	9	0	145	595	1	451	0.0	924
MS.gene66170.t1	MTR_3g056100	95.565	451	7	1	145	595	1	438	0.0	890
MS.gene66170.t1	MTR_5g094430	66.782	578	139	8	24	595	15	545	0.0	746
MS.gene66170.t1	MTR_5g094430	67.544	456	112	5	146	595	8	433	0.0	612
MS.gene66170.t1	MTR_5g094430	67.347	441	108	5	161	595	1	411	0.0	589
MS.gene66170.t1	MTR_3g009470	43.532	487	192	14	60	489	109	569	6.44e-103	327
MS.gene66170.t1	MTR_7g080020	42.095	525	208	21	35	481	53	559	8.48e-93	302
MS.gene66170.t1	MTR_7g080000	40.333	481	208	12	35	477	55	494	6.57e-87	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66170.t1	AT4G26640	57.143	560	192	17	46	595	36	557	0.0	543
MS.gene66170.t1	AT4G26640	56.757	555	192	17	51	595	1	517	0.0	532
MS.gene66170.t1	AT4G26640	55.019	518	185	17	88	595	6	485	2.67e-162	473
MS.gene66170.t1	AT4G26640	61.637	391	123	11	214	595	9	381	2.20e-152	443
MS.gene66170.t1	AT4G26640	61.637	391	123	11	214	595	9	381	2.20e-152	443
MS.gene66170.t1	AT4G26640	61.637	391	123	11	214	595	9	381	2.20e-152	443
MS.gene66170.t1	AT4G26640	61.637	391	123	11	214	595	9	381	2.20e-152	443
MS.gene66170.t1	AT5G56270	42.589	479	177	15	60	477	108	549	1.61e-90	294
MS.gene66170.t1	AT2G03340	39.819	442	194	14	47	483	109	483	3.04e-82	267
MS.gene66170.t1	AT2G38470	53.558	267	110	5	223	477	160	424	4.99e-78	256

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Find 173 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGGCGACCTAGAGAT+CGG	0.552741	3.3:-45704699	None:intergenic
AAAATAGACCAAACAGTCTA+GGG	0.516089	3.3:+45710371	MS.gene66170:CDS
AACATGGGAAGAATAATGAT+GGG	0.637504	3.3:+45710583	MS.gene66170:CDS
AACGAAGTGGGACTAAGTCC+CGG	0.587976	3.3:-45704732	None:intergenic
AAGCATCACAAGTTGATGGT+AGG	0.527382	3.3:+45707195	MS.gene66170:CDS
AATAACAGCGCAAATCCATA+TGG	0.500702	3.3:+45710499	MS.gene66170:CDS
AATGGATCTTGACATCACAC+CGG	0.723113	3.3:+45707865	MS.gene66170:CDS
AATTACTGAGATAGTTTACA+AGG	0.494472	3.3:+45707385	MS.gene66170:CDS
AATTCCAATTCGGTTGACGA+CGG	0.584594	3.3:+45706641	MS.gene66170:CDS
ACAAACTCCCGCCGGCGAAT+TGG	0.348573	3.3:+45704563	MS.gene66170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGACCAAACAGTCTA+GGG	+	chr3.3:45710371-45710390	MS.gene66170:CDS	30.0%
AAATTTACTTCAATGCTCTC+AGG	+	chr3.3:45709252-45709271	MS.gene66170:intron	30.0%
AACATGGGAAGAATAATGAT+GGG	+	chr3.3:45710583-45710602	MS.gene66170:CDS	30.0%
ACAACACCGTTAAACAAAAA+AGG	-	chr3.3:45705817-45705836	None:intergenic	30.0%
ACACTAAATATGAATGTGCA+TGG	+	chr3.3:45709976-45709995	MS.gene66170:intron	30.0%
ACTATGAACAAACTTGAAAC+TGG	-	chr3.3:45710446-45710465	None:intergenic	30.0%
AGTGTTGTCAGATCAAATAT+AGG	+	chr3.3:45709888-45709907	MS.gene66170:intron	30.0%
ATTGTATAGTCATCAATGAG+AGG	-	chr3.3:45708021-45708040	None:intergenic	30.0%
CAAAGAAACACTGAAATAGT+TGG	+	chr3.3:45708799-45708818	MS.gene66170:intron	30.0%
CAGTAGATCAAATATGGTAA+TGG	+	chr3.3:45706694-45706713	MS.gene66170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	45704531	45710612	45704531	ID=MS.gene66170
chr3.3	mRNA	45704531	45710612	45704531	ID=MS.gene66170.t1;Parent=MS.gene66170
chr3.3	exon	45704531	45704788	45704531	ID=MS.gene66170.t1.exon1;Parent=MS.gene66170.t1
chr3.3	CDS	45704531	45704788	45704531	ID=cds.MS.gene66170.t1;Parent=MS.gene66170.t1
chr3.3	exon	45706533	45706709	45706533	ID=MS.gene66170.t1.exon2;Parent=MS.gene66170.t1
chr3.3	CDS	45706533	45706709	45706533	ID=cds.MS.gene66170.t1;Parent=MS.gene66170.t1
chr3.3	exon	45706963	45707515	45706963	ID=MS.gene66170.t1.exon3;Parent=MS.gene66170.t1
chr3.3	CDS	45706963	45707515	45706963	ID=cds.MS.gene66170.t1;Parent=MS.gene66170.t1
chr3.3	exon	45707615	45707780	45707615	ID=MS.gene66170.t1.exon4;Parent=MS.gene66170.t1
chr3.3	CDS	45707615	45707780	45707615	ID=cds.MS.gene66170.t1;Parent=MS.gene66170.t1
chr3.3	exon	45707862	45708011	45707862	ID=MS.gene66170.t1.exon5;Parent=MS.gene66170.t1
chr3.3	CDS	45707862	45708011	45707862	ID=cds.MS.gene66170.t1;Parent=MS.gene66170.t1
chr3.3	exon	45710129	45710612	45710129	ID=MS.gene66170.t1.exon6;Parent=MS.gene66170.t1
chr3.3	CDS	45710129	45710612	45710129	ID=cds.MS.gene66170.t1;Parent=MS.gene66170.t1

Gene Sequence

>MS.gene66170

ATGGACGCCGCCGGCGATACCAAATTCCGGCGACAAACTCCCGCCGGCGAATTGGAACACCATTCTGAAGATCCAAATCGAACCGGGTCATCTTCACGACCCGATTCTGTTTCTGACGGACCCACCACTTCCGGAGCTAGATACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCTAGGTCGCCGGTTTTGACGATTCCGCCGGGACTTAGTCCCACTTCGTTTCTTGAATCACCGGTTTTACTCTCTAACATGAAGGTCAGTGAGTGAAGCATACTTCGATTTTTGAATTTTTCTAGGGTTTTGTTATTTTTCTACGTTGATTGTGTGAAATGTAGTTGAATTTTTAGTTTTGATCTGTTTGAGATTCTTCAAAGTAAAAAAAATTAAATGGGTAAGTTAATTTAATGTCAAAATGTGTTTTTTCAGCTGAATTTGGTTAAAAATTATATGGGTAAGTTAATTTATTATCAAAAATGTGTTTTTTTTAGTTGAATTTGGTCAAAAATTAAATGGGTTAGTTAATTTATTACCAAAATGCGTTTTTTTTCAGTTGAATTTGGTCAAAAATGGTATTTTTACTTGACTTAAGTGAACCGAAGTACACCTACCTCTGCGCACAATTGCAGAGACTAATCCTCTCGAGATAATTGAGATTCATTTAACAGTTGAGTTCCCCTAATAAATGTTTTTCCATACACATTAACCGAGGGATTGAATCGTCGGTCAAATGGTTAAGGGTTCAAGTATCTACCATTTGTGCCGTTGGTGAAGTCCACCTAGTGTGAGTGGCATATAAAAAATTTGCTGTACTTTTCAGTGTGATTTTCATGCTGATGTTAACTATGCAAACACAGCATATCTGGGGAATTATTCTGGTTCTGTTGGAATTAATGTTATTATTTTTGGGGGTCTTAACAATGATGTGAGTTAATTGTTGATGAGTTGGAGATGCTGTGTGTTTCATGAAAAGTTGAGTATATGTGCTTGTTTAATCTGGTGGCTAATATAATTTTGCTTATTTGTTTATTCTGTTTTATAATTGCAGTTGGCTCGTTATTGTGTTTGATCTTTTTCACTTGGTAGATTTTATTATATGAGTGGTTTGTGTTGGTACTGTCAGATTCTGATGCTTGCATTTGTAGAATTCTATTTTGCTGCTTTATGCTCAATATAGTAACCTATTGGAAATTGGAATATGACTTTCTCTTATGATCGTTCAACAATTTTTTTTCAGTGTTGTTTTTTCACATAATAAATCTTCCTTTTGTATTGATGCTTTTCCTTTTTTGTTTAACGGTGTTGTAGGGAGCACAGAAAATCCTTTTTTAACCTCCAATTTACACATGTGGAAAAAACGAATAGATGCATCACCATGGATTAGTTAGTGGATTCCTTTTTTATTTCTGTATAACATGACATTAGAATAATATAAAGAATGTCAGAGATTCTGTGCCATGATATTTTTTCTTTGAAAGGACATGATTGTTTTGATGTTCATAGTTCGGGTGGTCCTAACCTAACTTGTGCAGTTCAGGATTCATGTGAGAATGGCTTTTCGGAGTTGTGTTTATATAAGTCCCGCATATCTAATATCTAGGAACCAAATAAGCATGTGATGTTATTGTGTGGAGAAAATTAACAACTTCGTTTATACTCGGTTGTAATTGCCCTTTCTGCATAGGTAGCTGATAAATCTGCTAATATTTCTGGTCAACTCAGATGATTTTGTATGTGGTTTTTTCATTCTGTTATTGCTATTAATTAGTCTGTCCATTATCCCTTGGCTTCTGTTTAGGCCATAGATTTTCCAGGTATCGTGGAAGTTGCTGTTATTTAGTCCATTTCTTTTTTCATTTCTTTCCAACTTGTTTCTATGAGTGAAGAGTTATAATCAAGAGCGATGAGAGGGTTTTATGAGCATTCATTTGATTCTACAATTGTTGCAGTAAGAGGGTTTTAGATTATATGATAGTATAATATTTTTTCTTATCTCTTGCAGGTAGAACCTTCACCTACAACAGGCTCCCTTCCTAGGCTTCAACAAACAGTACATGGTTTTGTAACTTCTTCTACGTCCGCTGCGTTTCCTGTAACCTCTGCGTGCTTTAATTCCAATTCGGTTGACGACGGAAAATCCAGCTTCTTTGAATTCAAACCGCACAGTAGATCAAATATGGTAATGGACTTGAGTTTGATTTTTTCACCCTTCTTTAATTTTACCTGATAATGAACTGTGCACTGAGGTTATCAAGATAAGATGATTAATTGAAGTGTAATATTTTCACTGGTTCTTTTTCTTTTTTTGGGTGGCGTTGTAAAGTAAAAGTTGAAAACAGATTCGGTTGTCATGTACAATGTTCCGGCTAATATTGTTTTGAATATTACTCCTGGTTGCATAGTACTTACACAGTGCTCTTCACTTGTTTAAGGTTCCTGCTGACTTTTACAACCATGCATGCGAACAATCTACTCAAATAGACGGTCAAGGAAATGTTAAATCTTTTGTCTCGTCCCCACTGGTCAAAAGTGAAACGGCAGTCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGATTAGTTCAGGGGCTAGTGCTCATGTTGAAGTCGATTTGGACGAATCAAATCCCAGTGGCAGCAAAGCAACTGGGCTTCAAGCATCACAAGTTGATGGTAGGGGTAGTGGACTTTCAGTTGCTGCCGATAAGGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCCAACTGTGAAGTGAAGAAACTCTTCGAACGCTCTCATGACGGCCAAATTACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATTCTCTGGTGGAAATATGATGTCTGTGCAAGAAGAGAGATCTGATAGGGCTTCTTTGACTAGCCGAGACGGTAATAGCAGATGAATACTTCTGATTGATTCCATTCTATTATTACTTAGTGCCAAGCAAATAATATGACTTTCTTTTTCTTTCAATTCTTGAATTGTAGACAAAGGCTTTAATAATTATGGTCAGGTGTCTCATGCAGCTGAGCGTGACAGTACTCCTGAACTATCGCCTATAGCAGTGAATGATGGTAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCAGAATAATGATGAGGTTGATGAAGATGATCCTTTCTCAAAGAGAAGGTTTGACGATTTAGGCCAAAGTTAATTTTTTTTTTGTTGCTTGTACACTTGCTGATCAAGAGGTTTTTTTTTATTAAGCAGAAAAATGGATCTTGACATCACACCGGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTTGTAAGAGGCAATCCTAACCCTAGGTATGCCCTCTCATTGATGACTATACAATATAAACTAAATTGATGAAGTCCAACTTAATGTGCTTGTTTCGGATTATTTTACAAAAAAAAAAAAAAAAACCTTTGGTTATTTAAAAAATACTTCTCGCTTATTTGGGTAAGTTTTGAAAAAATTGGTTTATAGATTCAGGAATAGGGAAAAGAGTAGCAATAGCATCCTATAACAGAATTTTGAAATGGATTTTGTTCTAAACTGTAAATCTTAAGCTAATGCAAGGTTTTATTAAAAGAATTACAATTCATTAAAAGAATTCTATTTGTCTCTTTTCTGACTCATCAGTTTGGAATAATTGCAAAGTCATGACTTAGTTAGTATACGGAAGTGTTTTAAAAACCGGGCCGGTCATCGACCCGGTAAGGTCACTGGTTCACTGGTCTAAGGGAGCAGTTCTCTACTGATTTTGTGATTTTTTTTTCAACTTAAAAAAAAGGTAAGCATTAGACAGCTCGGGTTGCAGAAACCCCCGGTTTACCGGTTTTGGCCGGTTCGTGCCGTTTTCCACCGGTTTAAATGCATGCCCCATCCAATAACAAGACTGGACCGGTTACCCATCCGGTTCCCGGTTCGACCGGTCTGGATTTTAAAACACTTGTATAAGGTTGATGCCTGGGAAATCGATGTTGTATACCAGTACTGAATTGGAGTTGACAAGTGATGATGGTCGGTTAAAAAGGAACTAAAACAACTAATTACATGTAATGGCTTAGGAAGCAGTTTGAATGTAAGAACATCAGTGCTAAGAATATGCAAAGAAACACTGAAATAGTTGGAAATCAAATGAGTTAGTAAAAGTTTGATCCTATGAAATGGATGCTGTAGACCAGTGTAGAATTGGCATTGAGAGATGATGATGGTAGGTTCAAAAGGATCTGTTATATAATTAAATACATATTGGTTAAGGGAGCAGTTCGAATGTTAGAGCATCACCACTGAGAAAGTATGAGTAGGGATGGCAATGACCATGGCTATCATCTGGCACAGATAGTAGATATCCGATACCCACCCTGTTGATAAAATTGATAGACGTGCCCCGCCCATATATGTGCGCATATCTGCTAGACGGGTATTTAGCAGATTCTGAGGTGTCGGCGGGTAGTTGCAGATATCCAGGGATATCAATTTTATTAAAAAAAATGCATTTATGTAAAAATAATGCAGTACCGTTAGATACTTAACTATCAAGAAAGTGTTGAGGAATGCAAATTTACTTCAATGCTCTCAGGAGAAAATACGTCCAACAACATAATGATGGTTATGTGCCATAGGTTAACAGTGAGTTATAAGGCATTTTAGGGGAAAGGAAGGGCAATAAGATATTTAGGGTGTGTTTGTGTTGTGAGTTGGTTTTTGGAGTGCTAAGTCTATATTTGATATACATTTAATATTTTAAAAAAACTAAAATAACATGATATAATATGCTTGTGTCTCATAAATATTTTAAAAAAACTATTTAATATTTCATTAAATAGTTTGAACAATATGCAAGTATGCGTCTAGCTCAGAATCTCGTTGAATAGGAAGGGGAATTGCTACCTTGTAAATTCCTTGTCATAAGCTCGTATTGACTAAACTATTGAAGAGTAAGACTACTATCTAGTTGAACTTTATTCGGGCACTAGAATTGTTTTTCTTTCTCTTAACCCAATGATTGTTGTAGTTGACCCCAATTTTACCACTAAGGCTTGTTTTTTGTCATTTTCCAAATTCATTGGGCACTTGGGCCGAAGCAGCAATAAAGTGAACTATTCTAATCTAGGTTAGTTTCGGTGCAGTGGTTGTGGTGGGAATCATCTTTAAAATAACAGATGAAATGATGGATACTATATAGTGTCACTCAGTGTTGTCAGATCAAATATAGGCTGTAGCAACACTGCAGCGAAGTGGAATTTAAGAAACCATTAATTTCCATAATCTGCTATTGACAACACTAAATATGAATGTGCATGGAATGTAAATAAAATATGTGTACTTAGACCTTGATGAGCTTGGGAGATTTGTCTATGAACTGTTTTGTATTTGATAAAAAGAATGTGGTGTTTTGTTGCTTATTTTTGGGTAACATTGCTGCTTATCACAGGAGTTATTACAAATGCACAAATGCCGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCACATGATCCGAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCGAGGCATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGACATACAAGAATCCGGCAAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTCAGCCCAACCGCTGAAAATAGACCAAACAGTCTAGGGAGAATGATGCGCAATGAATATGGCGACAGTCAAACACATAACGGCAATTCCAGTTTCAAGTTTGTTCATAGTTCTACACCACCTCCGGTATACTTTGGTGTACTAAATAACAGCGCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAGTTCATCTTTAAACCGTTCTGCATATCCTTGCCCACAGAACATGGGAAGAATAATGATGGGTCCCTAA

Protein sequence

>MS.gene66170.t1

MDAAGDTKFRRQTPAGELEHHSEDPNRTGSSSRPDSVSDGPTTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTVHGFVTSSTSAAFPVTSACFNSNSVDDGKSSFFEFKPHSRSNMVPADFYNHACEQSTQIDGQGNVKSFVSSPLVKSETAVPSDEISLSSSPVQMISSGASAHVEVDLDESNPSGSKATGLQASQVDGRGSGLSVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRFSGGNMMSVQEERSDRASLTSRDDKGFNNYGQVSHAAERDSTPELSPIAVNDGSPEGAGFLSNQNNDEVDEDDPFSKRRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARHNSHDMAGPSAAGGHTRIRQEESDTISLDLGMGLSPTAENRPNSLGRMMRNEYGDSQTHNGNSSFKFVHSSTPPPVYFGVLNNSANPYGSRENPSDSSSLNRSAYPCPQNMGRIMMGP