Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66216.t1 | RHN51502.1 | 59 | 210 | 81 | 1 | 130 | 339 | 38 | 242 | 7.00E-54 | 221.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66216.t1 | Q9SML8 | 73.9 | 46 | 12 | 0 | 418 | 463 | 15 | 60 | 9.0e-10 | 66.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66216.t1 | A0A396HDU9 | 59.0 | 210 | 81 | 1 | 130 | 339 | 38 | 242 | 5.0e-54 | 221.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66216.t1 | MTR_6g453220 | 69.500 | 200 | 56 | 1 | 130 | 329 | 38 | 232 | 1.92e-86 | 275 |
| MS.gene66216.t1 | MTR_1g107015 | 83.784 | 148 | 24 | 0 | 47 | 194 | 1 | 148 | 1.16e-72 | 247 |
| MS.gene66216.t1 | MTR_1g107015 | 81.757 | 148 | 27 | 0 | 47 | 194 | 76 | 223 | 2.28e-70 | 242 |
| MS.gene66216.t1 | MTR_7g037650 | 89.908 | 109 | 11 | 0 | 395 | 503 | 1 | 109 | 2.13e-58 | 202 |
| MS.gene66216.t1 | MTR_1g107015 | 82.927 | 123 | 21 | 0 | 72 | 194 | 1 | 123 | 1.85e-57 | 205 |
| MS.gene66216.t1 | MTR_6g453210 | 58.824 | 85 | 10 | 1 | 2 | 86 | 53 | 112 | 1.30e-21 | 90.5 |
| MS.gene66216.t1 | MTR_8g005980 | 84.783 | 46 | 7 | 0 | 418 | 463 | 97 | 142 | 2.75e-15 | 78.2 |
| MS.gene66216.t1 | MTR_5g017890 | 82.927 | 41 | 7 | 0 | 261 | 301 | 476 | 516 | 5.51e-13 | 72.0 |
| MS.gene66216.t1 | MTR_6g086270 | 68.182 | 44 | 14 | 0 | 291 | 334 | 793 | 836 | 1.28e-11 | 67.8 |
| MS.gene66216.t1 | MTR_3g101210 | 75.610 | 41 | 10 | 0 | 261 | 301 | 411 | 451 | 1.43e-11 | 67.4 |
| MS.gene66216.t1 | MTR_1g043040 | 69.565 | 46 | 14 | 0 | 418 | 463 | 15 | 60 | 1.44e-11 | 66.2 |
| MS.gene66216.t1 | MTR_3g101210 | 75.610 | 41 | 10 | 0 | 261 | 301 | 411 | 451 | 1.51e-11 | 67.4 |
| MS.gene66216.t1 | MTR_1g076130 | 69.565 | 46 | 14 | 0 | 418 | 463 | 15 | 60 | 1.74e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66216.t1 | AT1G04410 | 73.913 | 46 | 12 | 0 | 418 | 463 | 15 | 60 | 2.77e-12 | 68.6 |
| MS.gene66216.t1 | AT5G43330 | 71.739 | 46 | 13 | 0 | 418 | 463 | 15 | 60 | 4.48e-12 | 67.8 |
| MS.gene66216.t1 | AT5G66850 | 75.610 | 41 | 10 | 0 | 261 | 301 | 450 | 490 | 5.67e-12 | 68.9 |
| MS.gene66216.t1 | AT5G66850 | 75.610 | 41 | 10 | 0 | 261 | 301 | 450 | 490 | 6.50e-12 | 68.6 |
Find 87 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCCCTCTTGCAATTAT+TGG | 0.121406 | 3.3:+46896975 | None:intergenic |
| TAAGCTTGCTGAACCATTTC+TGG | 0.125707 | 3.3:-46897360 | MS.gene66216:CDS |
| ACCCGTCTCCACATTTAATT+TGG | 0.182489 | 3.3:+46897571 | None:intergenic |
| CCGGTCTATTGCTGCAAGTT+TGG | 0.267386 | 3.3:+46897607 | None:intergenic |
| AACTTGCTTGTTGATTCTTC+TGG | 0.276782 | 3.3:-46897389 | MS.gene66216:CDS |
| GAGCTATTGGATCCACCTTT+TGG | 0.281548 | 3.3:-46897806 | MS.gene66216:CDS |
| CAGAATCCGTTGTTCGGAAT+TGG | 0.313392 | 3.3:-46897676 | MS.gene66216:CDS |
| TTCTCAGTCGTAAAGTTGTT+AGG | 0.314549 | 3.3:+46898082 | None:intergenic |
| AAATTCTGTGAATGAGCTAT+TGG | 0.322862 | 3.3:-46897819 | MS.gene66216:CDS |
| TAGTATATCAATGCAATTGA+TGG | 0.323827 | 3.3:+46897304 | None:intergenic |
| ATTAGTTCTCAAAACGAATA+TGG | 0.331577 | 3.3:-46897767 | MS.gene66216:CDS |
| TGTACTACCAAAGGACAAAT+TGG | 0.333175 | 3.3:-46897011 | MS.gene66216:CDS |
| GTTGATTTCTCAAATCTATA+AGG | 0.339727 | 3.3:+46896792 | None:intergenic |
| AGCTCCATCTTCACCCCTTT+AGG | 0.339946 | 3.3:+46896891 | None:intergenic |
| TGATATTGAACGAGCATTAG+AGG | 0.356190 | 3.3:-46896916 | MS.gene66216:CDS |
| ATCTTGATTGTGCAAGCATA+TGG | 0.357090 | 3.3:+46897240 | None:intergenic |
| CCACTTGATGTTAATATTGC+TGG | 0.359423 | 3.3:-46898169 | MS.gene66216:CDS |
| GAATTTGAGTTCACTTGAAC+AGG | 0.365563 | 3.3:+46897836 | None:intergenic |
| TTTCCTGTTGAACTAATCAT+TGG | 0.384379 | 3.3:+46898115 | None:intergenic |
| TGCATCACCAATTTGTCCTT+TGG | 0.398749 | 3.3:+46897004 | None:intergenic |
| TGAGTAGCTTTCTCCAGAAA+TGG | 0.399531 | 3.3:+46897347 | None:intergenic |
| TGAAGAAAATAGTCTGTTGA+AGG | 0.399959 | 3.3:+46896762 | None:intergenic |
| TCTCCCACATCAGATTTCTT+AGG | 0.401221 | 3.3:+46897489 | None:intergenic |
| AGAATATACGTTATCAAAAC+AGG | 0.413319 | 3.3:+46898226 | None:intergenic |
| AAACCAATGATTAGTTCAAC+AGG | 0.420450 | 3.3:-46898118 | MS.gene66216:CDS |
| GAAACGAGTGATGCAGTTAC+TGG | 0.424624 | 3.3:-46897743 | MS.gene66216:CDS |
| GAGCAGGAACAGACTCTGTT+TGG | 0.424703 | 3.3:+46897708 | None:intergenic |
| GAGTTCACTTGAACAGGAAT+GGG | 0.435056 | 3.3:+46897842 | None:intergenic |
| TCTCAGTCGTAAAGTTGTTA+GGG | 0.435210 | 3.3:+46898083 | None:intergenic |
| TTCTGGAGAAAGCTACTCAA+TGG | 0.453661 | 3.3:-46897343 | MS.gene66216:CDS |
| TGAGTTCACTTGAACAGGAA+TGG | 0.455749 | 3.3:+46897841 | None:intergenic |
| CAATTCACATAGATATCAAT+GGG | 0.461248 | 3.3:-46897415 | MS.gene66216:CDS |
| TGGACGACATCAAGTGGTTT+CGG | 0.466827 | 3.3:+46897062 | None:intergenic |
| GTTTCGGTGGCAGTGCAATC+AGG | 0.466903 | 3.3:+46897078 | None:intergenic |
| TCAGATGTTACGATCCCAAC+AGG | 0.473593 | 3.3:-46897199 | MS.gene66216:CDS |
| ACAATTCACATAGATATCAA+TGG | 0.474772 | 3.3:-46897416 | MS.gene66216:CDS |
| TGATAACAGAATCCGTTGTT+CGG | 0.477984 | 3.3:-46897682 | MS.gene66216:CDS |
| GATGTTGATGTTGTGGCAGC+TGG | 0.480190 | 3.3:-46896864 | MS.gene66216:CDS |
| ATTTGGCATTCAGTCTCATC+CGG | 0.480305 | 3.3:+46897588 | None:intergenic |
| CTCACTTAAGCATTGCAGAA+TGG | 0.480948 | 3.3:+46897130 | None:intergenic |
| GAGCATTAGAGGCACCTAAA+GGG | 0.483081 | 3.3:-46896905 | MS.gene66216:CDS |
| AATTATGTTATTCAACTGCC+TGG | 0.487678 | 3.3:-46897911 | MS.gene66216:CDS |
| GGCACCTAAAGGGGTGAAGA+TGG | 0.498260 | 3.3:-46896895 | MS.gene66216:CDS |
| ATCAGGTGATTAGATGAGAA+TGG | 0.504770 | 3.3:+46897095 | None:intergenic |
| GAGAAAGCACAAAGTGTGCT+TGG | 0.505951 | 3.3:-46897998 | MS.gene66216:CDS |
| GATTCTGTTATCACTTGAGC+AGG | 0.511926 | 3.3:+46897692 | None:intergenic |
| CCAAACTTGCAGCAATAGAC+CGG | 0.513055 | 3.3:-46897607 | MS.gene66216:CDS |
| ACTGCATCTCTCACTTCTCC+AGG | 0.516055 | 3.3:+46897893 | None:intergenic |
| ATTGCAAGAGGGATGATGTT+GGG | 0.517497 | 3.3:-46896969 | MS.gene66216:CDS |
| GATCCCAACAGGTTTCTAGT+TGG | 0.518235 | 3.3:-46897188 | MS.gene66216:CDS |
| CGAGCATTAGAGGCACCTAA+AGG | 0.522345 | 3.3:-46896906 | MS.gene66216:CDS |
| TGCCAAATTAAATGTGGAGA+CGG | 0.524984 | 3.3:-46897573 | MS.gene66216:CDS |
| AACTTTACGACTGAGAAGAT+AGG | 0.527969 | 3.3:-46898076 | MS.gene66216:CDS |
| CCTTTCTCATGTACTACCAA+AGG | 0.529876 | 3.3:-46897020 | MS.gene66216:CDS |
| GCCAAATTAAATGTGGAGAC+GGG | 0.535692 | 3.3:-46897572 | MS.gene66216:CDS |
| TCCGTTGTTCGGAATTGGCT+AGG | 0.536672 | 3.3:-46897671 | MS.gene66216:CDS |
| CCTTTGGTAGTACATGAGAA+AGG | 0.537275 | 3.3:+46897020 | None:intergenic |
| ACTTGAACAGGAATGGGTTG+TGG | 0.539413 | 3.3:+46897848 | None:intergenic |
| CAAGCCAACTAGAAACCTGT+TGG | 0.545365 | 3.3:+46897184 | None:intergenic |
| TTCGCAACATCTCCAAAAGG+TGG | 0.549066 | 3.3:+46897794 | None:intergenic |
| GCATTGCAGAATGGAGGGAG+AGG | 0.558726 | 3.3:+46897139 | None:intergenic |
| GCTAATTGATGTTGATGTTG+TGG | 0.572556 | 3.3:-46896871 | MS.gene66216:CDS |
| CCAGCAATATTAACATCAAG+TGG | 0.575799 | 3.3:+46898169 | None:intergenic |
| AATTGCAAGAGGGATGATGT+TGG | 0.578254 | 3.3:-46896970 | MS.gene66216:CDS |
| AAGCCAACTAGAAACCTGTT+GGG | 0.578311 | 3.3:+46897185 | None:intergenic |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580192 | 3.3:-46896832 | MS.gene66216:CDS |
| CTTAAGCATTGCAGAATGGA+GGG | 0.584117 | 3.3:+46897134 | None:intergenic |
| TGCGCCTAAGAAATCTGATG+TGG | 0.594249 | 3.3:-46897493 | MS.gene66216:CDS |
| ACTTAAGCATTGCAGAATGG+AGG | 0.594485 | 3.3:+46897133 | None:intergenic |
| ACTCTGTTTGGTCTTCAACA+AGG | 0.608414 | 3.3:+46897720 | None:intergenic |
| AGTTTGGAAACAAGCAACAA+TGG | 0.608653 | 3.3:+46897623 | None:intergenic |
| ACTGAATGCCAAATTAAATG+TGG | 0.610766 | 3.3:-46897579 | MS.gene66216:CDS |
| AGCATTAGAGGCACCTAAAG+GGG | 0.613235 | 3.3:-46896904 | MS.gene66216:CDS |
| TCAATGAGTGCGTTGTATCG+AGG | 0.620910 | 3.3:-46897524 | MS.gene66216:CDS |
| GCAAATTGAGTGACGATGTG+TGG | 0.628632 | 3.3:+46897042 | None:intergenic |
| CTTGCTCCAATAATTGCAAG+AGG | 0.634209 | 3.3:-46896981 | MS.gene66216:CDS |
| TAGATTTGAGAAATCAACAC+GGG | 0.637907 | 3.3:-46896787 | MS.gene66216:CDS |
| GCGCCTAAGAAATCTGATGT+GGG | 0.649976 | 3.3:-46897492 | MS.gene66216:CDS |
| ACAAAGTGTGCTTGGTACTG+TGG | 0.650062 | 3.3:-46897990 | MS.gene66216:CDS |
| ACCTAGCCAATTCCGAACAA+CGG | 0.653438 | 3.3:+46897670 | None:intergenic |
| CATTCTGCAATGCTTAAGTG+AGG | 0.671779 | 3.3:-46897129 | MS.gene66216:CDS |
| TTGCTCCAATAATTGCAAGA+GGG | 0.684125 | 3.3:-46896980 | MS.gene66216:CDS |
| ACGACATCAAGTGGTTTCGG+TGG | 0.687869 | 3.3:+46897065 | None:intergenic |
| AGACGGGTTTGAAAACAAAG+TGG | 0.699478 | 3.3:-46897556 | MS.gene66216:CDS |
| GATGTGTGGACGACATCAAG+TGG | 0.711096 | 3.3:+46897056 | None:intergenic |
| AATTCACATAGATATCAATG+GGG | 0.785866 | 3.3:-46897414 | MS.gene66216:CDS |
| ATAGATTTGAGAAATCAACA+CGG | 0.801754 | 3.3:-46896788 | MS.gene66216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAATCAAATCATGTTT+CGG | - | chr3.3:46897039-46897058 | MS.gene66216:CDS | 20.0% |
| !!! | TTTTGATAACGTATATTCTA+AGG | - | chr3.3:46896765-46896784 | MS.gene66216:CDS | 20.0% |
| !!! | TTTTTCATTGATAACAGAAT+CGG | + | chr3.3:46897026-46897045 | None:intergenic | 20.0% |
| ! | AATTCACATAGATATCAATG+GGG | - | chr3.3:46897573-46897592 | MS.gene66216:CDS | 25.0% |
| ! | ACAATTCACATAGATATCAA+TGG | - | chr3.3:46897571-46897590 | MS.gene66216:CDS | 25.0% |
| ! | AGAATATACGTTATCAAAAC+AGG | + | chr3.3:46896764-46896783 | None:intergenic | 25.0% |
| ! | ATAGATTTGAGAAATCAACA+CGG | - | chr3.3:46898199-46898218 | MS.gene66216:CDS | 25.0% |
| ! | CAATTCACATAGATATCAAT+GGG | - | chr3.3:46897572-46897591 | MS.gene66216:CDS | 25.0% |
| ! | TAGTATATCAATGCAATTGA+TGG | + | chr3.3:46897686-46897705 | None:intergenic | 25.0% |
| !! | ATTAGTTCTCAAAACGAATA+TGG | - | chr3.3:46897220-46897239 | MS.gene66216:CDS | 25.0% |
| !! | GTTGATTTCTCAAATCTATA+AGG | + | chr3.3:46898198-46898217 | None:intergenic | 25.0% |
| !! | TTCACAAGACAATTTCTTTT+AGG | - | chr3.3:46897523-46897542 | MS.gene66216:CDS | 25.0% |
| !!! | AAGACAATTTCTTTTAGGTT+TGG | - | chr3.3:46897528-46897547 | MS.gene66216:CDS | 25.0% |
| AAATTCTGTGAATGAGCTAT+TGG | - | chr3.3:46897168-46897187 | MS.gene66216:CDS | 30.0% | |
| AATTATGTTATTCAACTGCC+TGG | - | chr3.3:46897076-46897095 | MS.gene66216:CDS | 30.0% | |
| ACTGAATGCCAAATTAAATG+TGG | - | chr3.3:46897408-46897427 | MS.gene66216:CDS | 30.0% | |
| TAGATTTGAGAAATCAACAC+GGG | - | chr3.3:46898200-46898219 | MS.gene66216:CDS | 30.0% | |
| TGAAGAAAATAGTCTGTTGA+AGG | + | chr3.3:46898228-46898247 | None:intergenic | 30.0% | |
| TTTCCTGTTGAACTAATCAT+TGG | + | chr3.3:46896875-46896894 | None:intergenic | 30.0% | |
| ! | AAACCAATGATTAGTTCAAC+AGG | - | chr3.3:46896869-46896888 | MS.gene66216:CDS | 30.0% |
| AACTTTACGACTGAGAAGAT+AGG | - | chr3.3:46896911-46896930 | MS.gene66216:CDS | 35.0% | |
| AGTTTGGAAACAAGCAACAA+TGG | + | chr3.3:46897367-46897386 | None:intergenic | 35.0% | |
| ATCAGGTGATTAGATGAGAA+TGG | + | chr3.3:46897895-46897914 | None:intergenic | 35.0% | |
| ATCATCCCTCTTGCAATTAT+TGG | + | chr3.3:46898015-46898034 | None:intergenic | 35.0% | |
| ATCTTGATTGTGCAAGCATA+TGG | + | chr3.3:46897750-46897769 | None:intergenic | 35.0% | |
| CAAGTCTGCTAATATTGAGA+TGG | - | chr3.3:46898155-46898174 | MS.gene66216:CDS | 35.0% | |
| CCACTTGATGTTAATATTGC+TGG | - | chr3.3:46896818-46896837 | MS.gene66216:CDS | 35.0% | |
| CCAGCAATATTAACATCAAG+TGG | + | chr3.3:46896821-46896840 | None:intergenic | 35.0% | |
| GCTAATTGATGTTGATGTTG+TGG | - | chr3.3:46898116-46898135 | MS.gene66216:CDS | 35.0% | |
| TCTCAGTCGTAAAGTTGTTA+GGG | + | chr3.3:46896907-46896926 | None:intergenic | 35.0% | |
| TGATAACAGAATCCGTTGTT+CGG | - | chr3.3:46897305-46897324 | MS.gene66216:CDS | 35.0% | |
| TGATATTGAACGAGCATTAG+AGG | - | chr3.3:46898071-46898090 | MS.gene66216:CDS | 35.0% | |
| TGCCAAATTAAATGTGGAGA+CGG | - | chr3.3:46897414-46897433 | MS.gene66216:CDS | 35.0% | |
| TGTACTACCAAAGGACAAAT+TGG | - | chr3.3:46897976-46897995 | MS.gene66216:CDS | 35.0% | |
| TTCTCAGTCGTAAAGTTGTT+AGG | + | chr3.3:46896908-46896927 | None:intergenic | 35.0% | |
| TTGCTCCAATAATTGCAAGA+GGG | - | chr3.3:46898007-46898026 | MS.gene66216:CDS | 35.0% | |
| ! | GAATTTGAGTTCACTTGAAC+AGG | + | chr3.3:46897154-46897173 | None:intergenic | 35.0% |
| ! | TTTTTCGCAACATCTCCAAA+AGG | + | chr3.3:46897199-46897218 | None:intergenic | 35.0% |
| !! | AACTTGCTTGTTGATTCTTC+TGG | - | chr3.3:46897598-46897617 | MS.gene66216:CDS | 35.0% |
| AAGCCAACTAGAAACCTGTT+GGG | + | chr3.3:46897805-46897824 | None:intergenic | 40.0% | |
| AATTGCAAGAGGGATGATGT+TGG | - | chr3.3:46898017-46898036 | MS.gene66216:CDS | 40.0% | |
| ACCCGTCTCCACATTTAATT+TGG | + | chr3.3:46897419-46897438 | None:intergenic | 40.0% | |
| ATTGCAAGAGGGATGATGTT+GGG | - | chr3.3:46898018-46898037 | MS.gene66216:CDS | 40.0% | |
| ATTTGGCATTCAGTCTCATC+CGG | + | chr3.3:46897402-46897421 | None:intergenic | 40.0% | |
| CATTCTGCAATGCTTAAGTG+AGG | - | chr3.3:46897858-46897877 | MS.gene66216:CDS | 40.0% | |
| CCTTTCTCATGTACTACCAA+AGG | - | chr3.3:46897967-46897986 | MS.gene66216:CDS | 40.0% | |
| CTTGCTCCAATAATTGCAAG+AGG | - | chr3.3:46898006-46898025 | MS.gene66216:CDS | 40.0% | |
| GAGTTCACTTGAACAGGAAT+GGG | + | chr3.3:46897148-46897167 | None:intergenic | 40.0% | |
| GATTCTGTTATCACTTGAGC+AGG | + | chr3.3:46897298-46897317 | None:intergenic | 40.0% | |
| GCCAAATTAAATGTGGAGAC+GGG | - | chr3.3:46897415-46897434 | MS.gene66216:CDS | 40.0% | |
| TCTCCCACATCAGATTTCTT+AGG | + | chr3.3:46897501-46897520 | None:intergenic | 40.0% | |
| TGAGTAGCTTTCTCCAGAAA+TGG | + | chr3.3:46897643-46897662 | None:intergenic | 40.0% | |
| TGAGTTCACTTGAACAGGAA+TGG | + | chr3.3:46897149-46897168 | None:intergenic | 40.0% | |
| TGCATCACCAATTTGTCCTT+TGG | + | chr3.3:46897986-46898005 | None:intergenic | 40.0% | |
| ! | ACTCTGTTTGGTCTTCAACA+AGG | + | chr3.3:46897270-46897289 | None:intergenic | 40.0% |
| ! | ACTTAAGCATTGCAGAATGG+AGG | + | chr3.3:46897857-46897876 | None:intergenic | 40.0% |
| ! | AGACGGGTTTGAAAACAAAG+TGG | - | chr3.3:46897431-46897450 | MS.gene66216:CDS | 40.0% |
| ! | CCTTTGGTAGTACATGAGAA+AGG | + | chr3.3:46897970-46897989 | None:intergenic | 40.0% |
| ! | CTCACTTAAGCATTGCAGAA+TGG | + | chr3.3:46897860-46897879 | None:intergenic | 40.0% |
| ! | CTTAAGCATTGCAGAATGGA+GGG | + | chr3.3:46897856-46897875 | None:intergenic | 40.0% |
| ! | TTCTGGAGAAAGCTACTCAA+TGG | - | chr3.3:46897644-46897663 | MS.gene66216:CDS | 40.0% |
| !! | TAAGCTTGCTGAACCATTTC+TGG | - | chr3.3:46897627-46897646 | MS.gene66216:CDS | 40.0% |
| !!! | AGTTGGCTTGAGCTCATTTT+TGG | - | chr3.3:46897816-46897835 | MS.gene66216:CDS | 40.0% |
| ACAAAGTGTGCTTGGTACTG+TGG | - | chr3.3:46896997-46897016 | MS.gene66216:CDS | 45.0% | |
| ACCTAGCCAATTCCGAACAA+CGG | + | chr3.3:46897320-46897339 | None:intergenic | 45.0% | |
| CAAGCCAACTAGAAACCTGT+TGG | + | chr3.3:46897806-46897825 | None:intergenic | 45.0% | |
| CAGAATCCGTTGTTCGGAAT+TGG | - | chr3.3:46897311-46897330 | MS.gene66216:CDS | 45.0% | |
| CCAAACTTGCAGCAATAGAC+CGG | - | chr3.3:46897380-46897399 | MS.gene66216:CDS | 45.0% | |
| GAAACGAGTGATGCAGTTAC+TGG | - | chr3.3:46897244-46897263 | MS.gene66216:CDS | 45.0% | |
| GCAAATTGAGTGACGATGTG+TGG | + | chr3.3:46897948-46897967 | None:intergenic | 45.0% | |
| GCGCCTAAGAAATCTGATGT+GGG | - | chr3.3:46897495-46897514 | MS.gene66216:CDS | 45.0% | |
| TCAATGAGTGCGTTGTATCG+AGG | - | chr3.3:46897463-46897482 | MS.gene66216:CDS | 45.0% | |
| TCAGATGTTACGATCCCAAC+AGG | - | chr3.3:46897788-46897807 | MS.gene66216:CDS | 45.0% | |
| TGCGCCTAAGAAATCTGATG+TGG | - | chr3.3:46897494-46897513 | MS.gene66216:CDS | 45.0% | |
| TGGACGACATCAAGTGGTTT+CGG | + | chr3.3:46897928-46897947 | None:intergenic | 45.0% | |
| TTCGCAACATCTCCAAAAGG+TGG | + | chr3.3:46897196-46897215 | None:intergenic | 45.0% | |
| ! | GAGAAAGCACAAAGTGTGCT+TGG | - | chr3.3:46896989-46897008 | MS.gene66216:CDS | 45.0% |
| ! | GAGCTATTGGATCCACCTTT+TGG | - | chr3.3:46897181-46897200 | MS.gene66216:CDS | 45.0% |
| !! | ACTTGAACAGGAATGGGTTG+TGG | + | chr3.3:46897142-46897161 | None:intergenic | 45.0% |
| !! | AGCATTAGAGGCACCTAAAG+GGG | - | chr3.3:46898083-46898102 | MS.gene66216:CDS | 45.0% |
| !! | GAGCATTAGAGGCACCTAAA+GGG | - | chr3.3:46898082-46898101 | MS.gene66216:CDS | 45.0% |
| !! | GATCCCAACAGGTTTCTAGT+TGG | - | chr3.3:46897799-46897818 | MS.gene66216:CDS | 45.0% |
| ACGACATCAAGTGGTTTCGG+TGG | + | chr3.3:46897925-46897944 | None:intergenic | 50.0% | |
| ACTGCATCTCTCACTTCTCC+AGG | + | chr3.3:46897097-46897116 | None:intergenic | 50.0% | |
| AGCTCCATCTTCACCCCTTT+AGG | + | chr3.3:46898099-46898118 | None:intergenic | 50.0% | |
| CCGGTCTATTGCTGCAAGTT+TGG | + | chr3.3:46897383-46897402 | None:intergenic | 50.0% | |
| GAGCAGGAACAGACTCTGTT+TGG | + | chr3.3:46897282-46897301 | None:intergenic | 50.0% | |
| GATGTGTGGACGACATCAAG+TGG | + | chr3.3:46897934-46897953 | None:intergenic | 50.0% | |
| GATGTTGATGTTGTGGCAGC+TGG | - | chr3.3:46898123-46898142 | MS.gene66216:CDS | 50.0% | |
| TCCGTTGTTCGGAATTGGCT+AGG | - | chr3.3:46897316-46897335 | MS.gene66216:CDS | 50.0% | |
| !! | CGAGCATTAGAGGCACCTAA+AGG | - | chr3.3:46898081-46898100 | MS.gene66216:CDS | 50.0% |
| GCATTGCAGAATGGAGGGAG+AGG | + | chr3.3:46897851-46897870 | None:intergenic | 55.0% | |
| GGCACCTAAAGGGGTGAAGA+TGG | - | chr3.3:46898092-46898111 | MS.gene66216:CDS | 55.0% | |
| GTTTCGGTGGCAGTGCAATC+AGG | + | chr3.3:46897912-46897931 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 46896737 | 46898272 | 46896737 | ID=MS.gene66216 |
| chr3.3 | mRNA | 46896737 | 46898272 | 46896737 | ID=MS.gene66216.t1;Parent=MS.gene66216 |
| chr3.3 | exon | 46896737 | 46898272 | 46896737 | ID=MS.gene66216.t1.exon1;Parent=MS.gene66216.t1 |
| chr3.3 | CDS | 46896737 | 46898272 | 46896737 | ID=cds.MS.gene66216.t1;Parent=MS.gene66216.t1 |
| Gene Sequence |
| Protein sequence |
