Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66308.t1 | XP_003620926.1 | 95.2 | 290 | 13 | 1 | 1 | 290 | 1 | 289 | 1.70E-145 | 525.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66308.t1 | Q9LVS0 | 56.4 | 172 | 54 | 5 | 1 | 162 | 1 | 161 | 2.9e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66308.t1 | G7KJT9 | 95.2 | 290 | 13 | 1 | 1 | 290 | 1 | 289 | 1.2e-145 | 525.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66308.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66308.t1 | MTR_6g092540 | 96.552 | 290 | 9 | 1 | 1 | 290 | 1 | 289 | 0.0 | 570 |
| MS.gene66308.t1 | MTR_8g101650 | 50.325 | 308 | 107 | 11 | 1 | 290 | 1 | 280 | 3.51e-73 | 226 |
| MS.gene66308.t1 | MTR_2g100930 | 52.717 | 184 | 55 | 5 | 1 | 162 | 1 | 174 | 8.95e-49 | 166 |
| MS.gene66308.t1 | MTR_4g100630 | 48.634 | 183 | 72 | 4 | 1 | 173 | 1 | 171 | 2.31e-47 | 161 |
| MS.gene66308.t1 | MTR_5g037080 | 46.237 | 186 | 77 | 5 | 1 | 175 | 3 | 176 | 1.53e-41 | 145 |
| MS.gene66308.t1 | MTR_3g104370 | 44.751 | 181 | 80 | 5 | 1 | 174 | 3 | 170 | 2.35e-36 | 130 |
| MS.gene66308.t1 | MTR_4g111975 | 73.239 | 71 | 19 | 0 | 91 | 161 | 132 | 202 | 7.71e-34 | 125 |
| MS.gene66308.t1 | MTR_7g067080 | 78.873 | 71 | 15 | 0 | 91 | 161 | 134 | 204 | 2.68e-33 | 124 |
| MS.gene66308.t1 | MTR_4g107230 | 48.780 | 164 | 69 | 5 | 32 | 187 | 15 | 171 | 1.05e-31 | 119 |
| MS.gene66308.t1 | MTR_3g462790 | 73.611 | 72 | 19 | 0 | 91 | 162 | 141 | 212 | 1.75e-31 | 119 |
| MS.gene66308.t1 | MTR_5g069710 | 74.648 | 71 | 18 | 0 | 91 | 161 | 126 | 196 | 2.77e-31 | 119 |
| MS.gene66308.t1 | MTR_1g111830 | 63.529 | 85 | 24 | 1 | 92 | 176 | 119 | 196 | 2.73e-30 | 114 |
| MS.gene66308.t1 | MTR_5g081860 | 69.863 | 73 | 20 | 1 | 91 | 161 | 119 | 191 | 4.67e-29 | 112 |
| MS.gene66308.t1 | MTR_0036s0260 | 70.769 | 65 | 19 | 0 | 97 | 161 | 28 | 92 | 1.85e-27 | 106 |
| MS.gene66308.t1 | MTR_2g090305 | 69.231 | 65 | 20 | 0 | 97 | 161 | 28 | 92 | 1.14e-25 | 100 |
| MS.gene66308.t1 | MTR_8g063600 | 68.493 | 73 | 21 | 1 | 91 | 161 | 100 | 172 | 1.78e-25 | 102 |
| MS.gene66308.t1 | MTR_1g033620 | 56.790 | 81 | 28 | 2 | 112 | 185 | 20 | 100 | 4.16e-20 | 87.4 |
| MS.gene66308.t1 | MTR_4g015130 | 67.857 | 56 | 18 | 0 | 106 | 161 | 2 | 57 | 1.50e-19 | 81.6 |
| MS.gene66308.t1 | MTR_5g027570 | 52.857 | 70 | 31 | 1 | 93 | 160 | 88 | 157 | 3.28e-19 | 84.7 |
| MS.gene66308.t1 | MTR_8g063870 | 61.538 | 65 | 23 | 1 | 99 | 161 | 94 | 158 | 1.83e-18 | 83.6 |
| MS.gene66308.t1 | MTR_5g088010 | 50.704 | 71 | 32 | 1 | 93 | 160 | 56 | 126 | 4.12e-18 | 82.0 |
| MS.gene66308.t1 | MTR_1g048660 | 48.315 | 89 | 36 | 3 | 98 | 185 | 13 | 92 | 3.80e-17 | 75.5 |
| MS.gene66308.t1 | MTR_5g088060 | 55.385 | 65 | 26 | 1 | 99 | 160 | 274 | 338 | 5.82e-17 | 80.9 |
| MS.gene66308.t1 | MTR_5g488160 | 55.385 | 65 | 26 | 1 | 99 | 160 | 274 | 338 | 5.82e-17 | 80.9 |
| MS.gene66308.t1 | MTR_5g027550 | 58.929 | 56 | 23 | 0 | 93 | 148 | 73 | 128 | 1.24e-16 | 77.4 |
| MS.gene66308.t1 | MTR_1g083180 | 50.633 | 79 | 33 | 3 | 99 | 174 | 63 | 138 | 5.27e-15 | 72.0 |
| MS.gene66308.t1 | MTR_5g075760 | 56.250 | 64 | 24 | 3 | 99 | 159 | 107 | 169 | 2.60e-12 | 65.1 |
| MS.gene66308.t1 | MTR_5g075790 | 54.688 | 64 | 25 | 3 | 99 | 159 | 115 | 177 | 8.75e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66308.t1 | AT5G56840 | 56.345 | 197 | 53 | 6 | 1 | 185 | 1 | 176 | 1.12e-61 | 195 |
| MS.gene66308.t1 | AT5G47390 | 52.907 | 172 | 60 | 4 | 1 | 162 | 1 | 161 | 1.72e-49 | 168 |
| MS.gene66308.t1 | AT5G61620 | 49.123 | 171 | 71 | 6 | 1 | 161 | 8 | 172 | 4.50e-46 | 157 |
| MS.gene66308.t1 | AT3G16350 | 40.850 | 306 | 116 | 11 | 1 | 252 | 1 | 295 | 5.82e-44 | 154 |
| MS.gene66308.t1 | AT1G70000 | 50.857 | 175 | 61 | 7 | 1 | 162 | 1 | 163 | 8.01e-43 | 147 |
| MS.gene66308.t1 | AT1G70000 | 50.857 | 175 | 61 | 7 | 1 | 162 | 1 | 163 | 8.01e-43 | 147 |
| MS.gene66308.t1 | AT1G49010 | 66.667 | 81 | 27 | 0 | 91 | 171 | 128 | 208 | 1.39e-33 | 125 |
| MS.gene66308.t1 | AT5G08520 | 67.949 | 78 | 25 | 0 | 91 | 168 | 112 | 189 | 4.74e-33 | 123 |
| MS.gene66308.t1 | AT2G38090 | 71.250 | 80 | 21 | 1 | 85 | 162 | 127 | 206 | 1.05e-32 | 122 |
| MS.gene66308.t1 | AT5G58900 | 74.286 | 70 | 18 | 0 | 92 | 161 | 136 | 205 | 6.26e-31 | 117 |
| MS.gene66308.t1 | AT5G01200 | 70.423 | 71 | 21 | 0 | 91 | 161 | 140 | 210 | 7.15e-30 | 114 |
| MS.gene66308.t1 | AT3G11280 | 69.014 | 71 | 22 | 0 | 91 | 161 | 121 | 191 | 1.16e-28 | 110 |
| MS.gene66308.t1 | AT3G11280 | 69.014 | 71 | 22 | 0 | 91 | 161 | 121 | 191 | 1.16e-28 | 110 |
| MS.gene66308.t1 | AT5G04760 | 65.714 | 70 | 24 | 0 | 92 | 161 | 94 | 163 | 2.89e-28 | 108 |
| MS.gene66308.t1 | AT5G05790 | 67.606 | 71 | 23 | 0 | 91 | 161 | 125 | 195 | 9.49e-28 | 108 |
| MS.gene66308.t1 | AT5G05790 | 67.606 | 71 | 23 | 0 | 91 | 161 | 125 | 195 | 9.49e-28 | 108 |
| MS.gene66308.t1 | AT1G74840 | 46.259 | 147 | 68 | 4 | 23 | 161 | 17 | 160 | 8.78e-27 | 105 |
| MS.gene66308.t1 | AT1G74840 | 46.259 | 147 | 68 | 4 | 23 | 161 | 17 | 160 | 1.89e-26 | 105 |
| MS.gene66308.t1 | AT1G19000 | 65.000 | 80 | 28 | 0 | 93 | 172 | 98 | 177 | 2.28e-26 | 105 |
| MS.gene66308.t1 | AT1G19000 | 65.000 | 80 | 28 | 0 | 93 | 172 | 98 | 177 | 2.28e-26 | 105 |
| MS.gene66308.t1 | AT5G23650 | 60.563 | 71 | 28 | 0 | 91 | 161 | 114 | 184 | 2.43e-23 | 98.2 |
| MS.gene66308.t1 | AT3G10580 | 58.228 | 79 | 31 | 1 | 93 | 171 | 91 | 167 | 6.61e-23 | 95.1 |
| MS.gene66308.t1 | AT3G10580 | 58.228 | 79 | 31 | 1 | 93 | 171 | 91 | 167 | 8.80e-23 | 95.5 |
| MS.gene66308.t1 | AT4G09450 | 57.971 | 69 | 29 | 0 | 93 | 161 | 87 | 155 | 8.14e-20 | 85.5 |
| MS.gene66308.t1 | AT3G10590 | 51.316 | 76 | 34 | 2 | 89 | 162 | 101 | 175 | 7.74e-16 | 75.1 |
Find 41 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATTAAGTCACACTAAT+TGG | 0.200852 | 6.4:-63557975 | None:intergenic |
| CATCAAGTTCATTTCTTATT+GGG | 0.230277 | 6.4:+63557952 | MS.gene66308:CDS |
| GATGCTACATTTGAAGAATT+TGG | 0.240336 | 6.4:-63557867 | None:intergenic |
| TCATCAAGTTCATTTCTTAT+TGG | 0.242280 | 6.4:+63557951 | MS.gene66308:CDS |
| AATTACAAGTCCTTGAATTA+TGG | 0.245021 | 6.4:-63556161 | None:intergenic |
| TTGTTCCATGTTATTTGAAT+TGG | 0.302002 | 6.4:-63557919 | None:intergenic |
| CATATCATAATCATCTGATT+TGG | 0.325159 | 6.4:-63557748 | None:intergenic |
| ATATTTAAAGACTTTGTTAG+AGG | 0.361817 | 6.4:-63557831 | None:intergenic |
| ACGTCTCTTCTTCTTATTCA+AGG | 0.365533 | 6.4:-63556813 | None:intergenic |
| CTATGCTCTTCTTCTGTCCA+TGG | 0.368105 | 6.4:-63556662 | None:intergenic |
| AGGACTTGTAATTCATTAAG+AGG | 0.396462 | 6.4:+63556171 | MS.gene66308:CDS |
| GAGCATAGAAAATTCCTTGT+TGG | 0.413219 | 6.4:+63556677 | MS.gene66308:CDS |
| CTTGTTGGACTTGAGAAGCT+TGG | 0.417301 | 6.4:+63556692 | MS.gene66308:CDS |
| GTTAGAGGATGTAGCCAATC+TGG | 0.418818 | 6.4:-63557816 | None:intergenic |
| ATTGATGATAGAGCCTCTAT+TGG | 0.438397 | 6.4:+63556342 | MS.gene66308:CDS |
| GAAGAAGAAAAGGAAGAAGT+AGG | 0.461242 | 6.4:-63556309 | None:intergenic |
| TCTATTGGTTATCTTTCAGA+TGG | 0.468296 | 6.4:+63556357 | MS.gene66308:CDS |
| GGACTTGAGAAGCTTGGAAA+AGG | 0.471359 | 6.4:+63556698 | MS.gene66308:CDS |
| GGATAATCTTGAAGAAGAAA+AGG | 0.479396 | 6.4:-63556319 | None:intergenic |
| GATCTTGAGCTAACTCTGGC+AGG | 0.479985 | 6.4:+63557894 | MS.gene66308:CDS |
| AATAGAGGCTCTATCATCAA+TGG | 0.491413 | 6.4:-63556340 | None:intergenic |
| GAAACATAGGCCATAATTCA+AGG | 0.492974 | 6.4:+63556151 | MS.gene66308:CDS |
| AGAAGCTTGGAAAAGGAGAC+TGG | 0.494349 | 6.4:+63556705 | MS.gene66308:CDS |
| TTTATTCATTAGGAGTTCCA+TGG | 0.499440 | 6.4:+63556645 | MS.gene66308:intron |
| ATCTGAAAGATAACCAATAG+AGG | 0.500436 | 6.4:-63556355 | None:intergenic |
| GCCAGAGTTAGCTCAAGATC+AGG | 0.513405 | 6.4:-63557891 | None:intergenic |
| TCATAGTTCGTACACAAGAA+AGG | 0.523916 | 6.4:+63556382 | MS.gene66308:CDS |
| GCATGGCTTGCAACTTGTGT+TGG | 0.527834 | 6.4:-63556764 | None:intergenic |
| GTAGGAGAAGAAGATGAAGT+AGG | 0.532464 | 6.4:-63556291 | None:intergenic |
| AAAGTCTTTAAATATGACAT+TGG | 0.555274 | 6.4:+63557839 | MS.gene66308:CDS |
| TGCTCACATTGTGGAAACAT+AGG | 0.564462 | 6.4:+63556138 | MS.gene66308:CDS |
| GCTTGGAAAAGGAGACTGGA+GGG | 0.565371 | 6.4:+63556709 | MS.gene66308:CDS |
| ACCTGATCTTGAGCTAACTC+TGG | 0.566325 | 6.4:+63557890 | MS.gene66308:CDS |
| ATCTTGAGCTAACTCTGGCA+GGG | 0.569532 | 6.4:+63557895 | MS.gene66308:CDS |
| GGCAGAAAGTGCTCACATTG+TGG | 0.586228 | 6.4:+63556129 | MS.gene66308:CDS |
| CAAGCTTCTCAAGTCCAACA+AGG | 0.608243 | 6.4:-63556691 | None:intergenic |
| TGATGATCATGAAGTTGAGA+AGG | 0.617743 | 6.4:+63557683 | MS.gene66308:CDS |
| ACGTTCAAGTCTCTTTGACA+TGG | 0.636224 | 6.4:+63556832 | MS.gene66308:CDS |
| AGCTTGGAAAAGGAGACTGG+AGG | 0.640674 | 6.4:+63556708 | MS.gene66308:CDS |
| AGGGTCCAATTCAAATAACA+TGG | 0.651228 | 6.4:+63557914 | MS.gene66308:CDS |
| CTTGGAAAAGGAGACTGGAG+GGG | 0.658703 | 6.4:+63556710 | MS.gene66308:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAACTTTTACAAAAT+GGG | - | chr6.4:63557033-63557052 | None:intergenic | 10.0% |
| !!! | TAAAAAAAACTTTTACAAAA+TGG | - | chr6.4:63557034-63557053 | None:intergenic | 10.0% |
| !!! | TTAATGTTATTTTAGAATTT+GGG | - | chr6.4:63557239-63557258 | None:intergenic | 10.0% |
| !!! | TTTAATGTTATTTTAGAATT+TGG | - | chr6.4:63557240-63557259 | None:intergenic | 10.0% |
| !! | ATTATAAAAAGAAGATTCTT+CGG | - | chr6.4:63557199-63557218 | None:intergenic | 15.0% |
| !!! | ATCTTGTTATTTTATTCATT+AGG | + | chr6.4:63556635-63556654 | MS.gene66308:intron | 15.0% |
| !!! | CTTTTTATAATTGTTGAATT+AGG | + | chr6.4:63557208-63557227 | MS.gene66308:intron | 15.0% |
| !! | AAAGTCTTTAAATATGACAT+TGG | + | chr6.4:63557839-63557858 | MS.gene66308:CDS | 20.0% |
| !! | ATATTTAAAGACTTTGTTAG+AGG | - | chr6.4:63557834-63557853 | None:intergenic | 20.0% |
| !! | ATTAACAAAAGCAATAACAA+AGG | - | chr6.4:63556471-63556490 | None:intergenic | 20.0% |
| !! | CTATGATGTATTTATTATGA+AGG | + | chr6.4:63556497-63556516 | MS.gene66308:intron | 20.0% |
| !! | GTATGCATTTATTGAATTTA+AGG | - | chr6.4:63556972-63556991 | None:intergenic | 20.0% |
| !! | TTAACAAAAGCAATAACAAA+GGG | - | chr6.4:63556470-63556489 | None:intergenic | 20.0% |
| !! | TTAGTTAAATAGTCCTAATA+AGG | - | chr6.4:63557452-63557471 | None:intergenic | 20.0% |
| !!! | GAAAAAACACATTTTTTTTC+CGG | - | chr6.4:63557126-63557145 | None:intergenic | 20.0% |
| !!! | TGATATTGTGGAAATTTTTT+AGG | + | chr6.4:63557581-63557600 | MS.gene66308:intron | 20.0% |
| ! | AATTACAAGTCCTTGAATTA+TGG | - | chr6.4:63556164-63556183 | None:intergenic | 25.0% |
| ! | ATAGTCAATCTTAACCATAA+GGG | + | chr6.4:63557313-63557332 | MS.gene66308:intron | 25.0% |
| ! | CAATGAAATTAGTCCTTATT+AGG | + | chr6.4:63557436-63557455 | MS.gene66308:intron | 25.0% |
| ! | CATATCATAATCATCTGATT+TGG | - | chr6.4:63557751-63557770 | None:intergenic | 25.0% |
| ! | CATCAAGTTCATTTCTTATT+GGG | + | chr6.4:63557952-63557971 | MS.gene66308:CDS | 25.0% |
| ! | TCATCAAGTTCATTTCTTAT+TGG | + | chr6.4:63557951-63557970 | MS.gene66308:CDS | 25.0% |
| ! | TCTGAATTTAGTCATTTACA+CGG | - | chr6.4:63557148-63557167 | None:intergenic | 25.0% |
| ! | TCTTGAATTGAATGATATTG+TGG | + | chr6.4:63557569-63557588 | MS.gene66308:intron | 25.0% |
| ! | TTAGAGACTTATTTGTTCTA+TGG | + | chr6.4:63557392-63557411 | MS.gene66308:intron | 25.0% |
| !! | GAATAAAATACTTTTGAGCA+TGG | - | chr6.4:63556784-63556803 | None:intergenic | 25.0% |
| !! | TTATTGAATTTAAGGTCATG+AGG | - | chr6.4:63556964-63556983 | None:intergenic | 25.0% |
| !! | TTGTTCCATGTTATTTGAAT+TGG | - | chr6.4:63557922-63557941 | None:intergenic | 25.0% |
| !!! | ATTGTGGAAATTTTTTAGGT+TGG | + | chr6.4:63557585-63557604 | MS.gene66308:intron | 25.0% |
| !!! | TGAATGGTTTTTAAGAATCA+TGG | + | chr6.4:63557170-63557189 | MS.gene66308:intron | 25.0% |
| AGGACTTGTAATTCATTAAG+AGG | + | chr6.4:63556171-63556190 | MS.gene66308:CDS | 30.0% | |
| ATCTGAAAGATAACCAATAG+AGG | - | chr6.4:63556358-63556377 | None:intergenic | 30.0% | |
| GATAGTCAATCTTAACCATA+AGG | + | chr6.4:63557312-63557331 | MS.gene66308:intron | 30.0% | |
| GATGCTACATTTGAAGAATT+TGG | - | chr6.4:63557870-63557889 | None:intergenic | 30.0% | |
| GGATAATCTTGAAGAAGAAA+AGG | - | chr6.4:63556322-63556341 | None:intergenic | 30.0% | |
| TAGTCAATCTTAACCATAAG+GGG | + | chr6.4:63557314-63557333 | MS.gene66308:intron | 30.0% | |
| TATGCTTAGAGGAAACAAAT+TGG | + | chr6.4:63557359-63557378 | MS.gene66308:intron | 30.0% | |
| TTGTTTCCTCTAAGCATATT+TGG | - | chr6.4:63557357-63557376 | None:intergenic | 30.0% | |
| TTTATTCATTAGGAGTTCCA+TGG | + | chr6.4:63556645-63556664 | MS.gene66308:intron | 30.0% | |
| ! | TCTATTGGTTATCTTTCAGA+TGG | + | chr6.4:63556357-63556376 | MS.gene66308:CDS | 30.0% |
| ! | TTTGTTGGAGTTAGACTTTT+TGG | + | chr6.4:63556204-63556223 | MS.gene66308:CDS | 30.0% |
| !! | ATGGTTTTTAAGAATCATGG+TGG | + | chr6.4:63557173-63557192 | MS.gene66308:intron | 30.0% |
| !! | CATGAAAAAGAGTTTTAGCA+TGG | + | chr6.4:63556260-63556279 | MS.gene66308:CDS | 30.0% |
| !! | CATGCTAAAACTCTTTTTCA+TGG | - | chr6.4:63556262-63556281 | None:intergenic | 30.0% |
| !! | GTGCTTTTTAAGAAATCAGA+GGG | - | chr6.4:63557059-63557078 | None:intergenic | 30.0% |
| !! | TGTGCTTTTTAAGAAATCAG+AGG | - | chr6.4:63557060-63557079 | None:intergenic | 30.0% |
| !!! | GAAATTTTTTAGGTTGGTAG+TGG | + | chr6.4:63557591-63557610 | MS.gene66308:intron | 30.0% |
| AACAAAAAGATGTGCCAGAT+TGG | + | chr6.4:63557802-63557821 | MS.gene66308:CDS | 35.0% | |
| AATAGAGGCTCTATCATCAA+TGG | - | chr6.4:63556343-63556362 | None:intergenic | 35.0% | |
| ACGCATTTGGATGTATAATC+CGG | + | chr6.4:63557104-63557123 | MS.gene66308:intron | 35.0% | |
| ACGTCTCTTCTTCTTATTCA+AGG | - | chr6.4:63556816-63556835 | None:intergenic | 35.0% | |
| AGAGTTCCAAATATGCTTAG+AGG | + | chr6.4:63557348-63557367 | MS.gene66308:intron | 35.0% | |
| AGGGTCCAATTCAAATAACA+TGG | + | chr6.4:63557914-63557933 | MS.gene66308:CDS | 35.0% | |
| CGTACACAAGAAAGGAAAAA+AGG | + | chr6.4:63556390-63556409 | MS.gene66308:CDS | 35.0% | |
| GAAACATAGGCCATAATTCA+AGG | + | chr6.4:63556151-63556170 | MS.gene66308:CDS | 35.0% | |
| GAAGAAGAAAAGGAAGAAGT+AGG | - | chr6.4:63556312-63556331 | None:intergenic | 35.0% | |
| GAGCATAGAAAATTCCTTGT+TGG | + | chr6.4:63556677-63556696 | MS.gene66308:CDS | 35.0% | |
| TCAAGTGATCTTAGAGTGAT+CGG | - | chr6.4:63557281-63557300 | None:intergenic | 35.0% | |
| TCATAGTTCGTACACAAGAA+AGG | + | chr6.4:63556382-63556401 | MS.gene66308:CDS | 35.0% | |
| TGACTAAATTCAGACGTGAA+TGG | + | chr6.4:63557154-63557173 | MS.gene66308:intron | 35.0% | |
| TGATGATCATGAAGTTGAGA+AGG | + | chr6.4:63557683-63557702 | MS.gene66308:CDS | 35.0% | |
| ! | ATTGATGATAGAGCCTCTAT+TGG | + | chr6.4:63556342-63556361 | MS.gene66308:CDS | 35.0% |
| !!! | AGAGGAAGTAGTAGTTTTGT+TGG | + | chr6.4:63556189-63556208 | MS.gene66308:CDS | 35.0% |
| !!! | TTGCTTTTTGAGCTGCTATT+TGG | - | chr6.4:63557639-63557658 | None:intergenic | 35.0% |
| ACGTTCAAGTCTCTTTGACA+TGG | + | chr6.4:63556832-63556851 | MS.gene66308:CDS | 40.0% | |
| CAAGTGATCTTAGAGTGATC+GGG | - | chr6.4:63557280-63557299 | None:intergenic | 40.0% | |
| GTAGGAGAAGAAGATGAAGT+AGG | - | chr6.4:63556294-63556313 | None:intergenic | 40.0% | |
| TGCTCACATTGTGGAAACAT+AGG | + | chr6.4:63556138-63556157 | MS.gene66308:CDS | 40.0% | |
| ! | AAAAGCACACTACTCCGAAT+TGG | + | chr6.4:63557071-63557090 | MS.gene66308:intron | 40.0% |
| ACCTGATCTTGAGCTAACTC+TGG | + | chr6.4:63557890-63557909 | MS.gene66308:CDS | 45.0% | |
| AGAAGCTTGGAAAAGGAGAC+TGG | + | chr6.4:63556705-63556724 | MS.gene66308:CDS | 45.0% | |
| AGCAGCTCAAAAAGCAAGTC+AGG | + | chr6.4:63557642-63557661 | MS.gene66308:CDS | 45.0% | |
| ATCTTGAGCTAACTCTGGCA+GGG | + | chr6.4:63557895-63557914 | MS.gene66308:CDS | 45.0% | |
| CAAGCTTCTCAAGTCCAACA+AGG | - | chr6.4:63556694-63556713 | None:intergenic | 45.0% | |
| CACACTACTCCGAATTGGAA+AGG | + | chr6.4:63557076-63557095 | MS.gene66308:intron | 45.0% | |
| CTATGCTCTTCTTCTGTCCA+TGG | - | chr6.4:63556665-63556684 | None:intergenic | 45.0% | |
| CTTAACACACACACCCCTTA+TGG | - | chr6.4:63557330-63557349 | None:intergenic | 45.0% | |
| CTTGTTGGACTTGAGAAGCT+TGG | + | chr6.4:63556692-63556711 | MS.gene66308:CDS | 45.0% | |
| GGACTTGAGAAGCTTGGAAA+AGG | + | chr6.4:63556698-63556717 | MS.gene66308:CDS | 45.0% | |
| GTTAGAGGATGTAGCCAATC+TGG | - | chr6.4:63557819-63557838 | None:intergenic | 45.0% | |
| !! | TATATATATATAATTATGAA+AGG | - | chr6.4:63556898-63556917 | None:intergenic | 5.0% |
| AGCTTGGAAAAGGAGACTGG+AGG | + | chr6.4:63556708-63556727 | MS.gene66308:CDS | 50.0% | |
| CTTGGAAAAGGAGACTGGAG+GGG | + | chr6.4:63556710-63556729 | MS.gene66308:CDS | 50.0% | |
| GATCTTGAGCTAACTCTGGC+AGG | + | chr6.4:63557894-63557913 | MS.gene66308:CDS | 50.0% | |
| GCCAGAGTTAGCTCAAGATC+AGG | - | chr6.4:63557894-63557913 | None:intergenic | 50.0% | |
| GCGTTCGTGCCTTTCCAATT+CGG | - | chr6.4:63557088-63557107 | None:intergenic | 50.0% | |
| GCTTGGAAAAGGAGACTGGA+GGG | + | chr6.4:63556709-63556728 | MS.gene66308:CDS | 50.0% | |
| ! | GCATGGCTTGCAACTTGTGT+TGG | - | chr6.4:63556767-63556786 | None:intergenic | 50.0% |
| ! | TGGAAAGGCACGAACGCATT+TGG | + | chr6.4:63557091-63557110 | MS.gene66308:intron | 50.0% |
| !! | GGCAGAAAGTGCTCACATTG+TGG | + | chr6.4:63556129-63556148 | MS.gene66308:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63556126 | 63557992 | 63556126 | ID=MS.gene66308 |
| chr6.4 | mRNA | 63556126 | 63557992 | 63556126 | ID=MS.gene66308.t1;Parent=MS.gene66308 |
| chr6.4 | exon | 63556126 | 63556411 | 63556126 | ID=MS.gene66308.t1.exon1;Parent=MS.gene66308.t1 |
| chr6.4 | CDS | 63556126 | 63556411 | 63556126 | ID=cds.MS.gene66308.t1;Parent=MS.gene66308.t1 |
| chr6.4 | exon | 63556657 | 63556853 | 63556657 | ID=MS.gene66308.t1.exon2;Parent=MS.gene66308.t1 |
| chr6.4 | CDS | 63556657 | 63556853 | 63556657 | ID=cds.MS.gene66308.t1;Parent=MS.gene66308.t1 |
| chr6.4 | exon | 63557603 | 63557992 | 63557603 | ID=MS.gene66308.t1.exon3;Parent=MS.gene66308.t1 |
| chr6.4 | CDS | 63557603 | 63557992 | 63557603 | ID=cds.MS.gene66308.t1;Parent=MS.gene66308.t1 |
| Gene Sequence |
| Protein sequence |
