Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66313.t1 | XP_003620925.1 | 62.5 | 368 | 27 | 1 | 1 | 257 | 1 | 368 | 1.20E-118 | 436 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66313.t1 | F4K933 | 28.5 | 372 | 133 | 8 | 1 | 254 | 15 | 371 | 3.0e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66313.t1 | G7KJT8 | 62.5 | 368 | 27 | 1 | 1 | 257 | 1 | 368 | 8.5e-119 | 436.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66313.t1 | TF | HRT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66313.t1 | MTR_6g092520 | 79.894 | 189 | 35 | 1 | 72 | 257 | 180 | 368 | 2.10e-104 | 307 |
| MS.gene66313.t1 | MTR_6g092520 | 93.333 | 90 | 6 | 0 | 1 | 90 | 1 | 90 | 1.18e-54 | 180 |
| MS.gene66313.t1 | MTR_7g090060 | 60.914 | 197 | 63 | 3 | 70 | 252 | 182 | 378 | 2.63e-70 | 221 |
| MS.gene66313.t1 | MTR_7g090060 | 83.146 | 89 | 15 | 0 | 2 | 90 | 6 | 94 | 1.54e-46 | 159 |
| MS.gene66313.t1 | MTR_6g092500 | 65.909 | 88 | 25 | 1 | 1 | 88 | 48 | 130 | 3.28e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66313.t1 | AT5G56780 | 36.257 | 171 | 88 | 5 | 90 | 254 | 216 | 371 | 2.44e-22 | 95.9 |
| MS.gene66313.t1 | AT5G56780 | 49.451 | 91 | 39 | 3 | 1 | 90 | 15 | 99 | 9.19e-19 | 85.5 |
| MS.gene66313.t1 | AT5G56780 | 36.364 | 110 | 65 | 3 | 147 | 256 | 337 | 441 | 2.92e-11 | 63.5 |
| MS.gene66313.t1 | AT4G26170 | 36.913 | 149 | 74 | 3 | 108 | 254 | 264 | 394 | 1.57e-18 | 85.1 |
| MS.gene66313.t1 | AT4G26170 | 33.113 | 151 | 58 | 4 | 142 | 250 | 355 | 504 | 1.02e-12 | 67.8 |
Find 46 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6.4:+63473378 | None:intergenic |
| GGCAACTTGTTTGATTTAAT+TGG | 0.166375 | 6.4:+63473671 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6.4:-63473519 | MS.gene66313:CDS |
| CCATAACCTGCCAGAAAATT+CGG | 0.277972 | 6.4:-63474581 | MS.gene66313:CDS |
| AATTCCACATATAATAGTTT+TGG | 0.286040 | 6.4:+63473307 | None:intergenic |
| TGTAGATCCTTCCTTTCCTT+TGG | 0.296236 | 6.4:+63474615 | None:intergenic |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6.4:-63473263 | MS.gene66313:CDS |
| TTCTTATTGGTCCTATTGAT+TGG | 0.301559 | 6.4:-63474648 | MS.gene66313:CDS |
| GTTGTATCTTGAACTATCTT+AGG | 0.344160 | 6.4:+63473566 | None:intergenic |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6.4:+63473650 | None:intergenic |
| TGAATTTGAACACGCGAGAT+AGG | 0.369579 | 6.4:+63473600 | None:intergenic |
| AGCTGCATCAACTAACGGTT+TGG | 0.370360 | 6.4:-63474533 | MS.gene66313:CDS |
| AAAAGATGTCATGAACATAA+AGG | 0.370970 | 6.4:-63473236 | MS.gene66313:CDS |
| GAGTAGTCTTCCCAATCAAT+AGG | 0.378287 | 6.4:+63474637 | None:intergenic |
| CGAGTAGTTGTGGTTTATCT+AGG | 0.384073 | 6.4:-63474475 | MS.gene66313:CDS |
| GCTGCATCAACTAACGGTTT+GGG | 0.402986 | 6.4:-63474532 | MS.gene66313:CDS |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6.4:+63473347 | None:intergenic |
| CATAACCTGCCAGAAAATTC+GGG | 0.421675 | 6.4:-63474580 | MS.gene66313:CDS |
| AAAGATGTCATGAACATAAA+GGG | 0.444185 | 6.4:-63473235 | MS.gene66313:CDS |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6.4:-63473530 | MS.gene66313:CDS |
| TCTTATTGGTCCTATTGATT+GGG | 0.454712 | 6.4:-63474647 | MS.gene66313:CDS |
| AAATCCGATGAAGCAGATAA+TGG | 0.464361 | 6.4:-63473635 | MS.gene66313:CDS |
| GTTAGGTGTCATGAACATAA+AGG | 0.469142 | 6.4:-63473455 | MS.gene66313:CDS |
| CCTTTCACTCAAAAGAAAGT+AGG | 0.483692 | 6.4:-63473698 | MS.gene66313:intron |
| GCCGCCATTATCTGCTTCAT+CGG | 0.502905 | 6.4:+63473631 | None:intergenic |
| CTTTCACTCAAAAGAAAGTA+GGG | 0.506784 | 6.4:-63473697 | MS.gene66313:intron |
| CTGCCAGAAAATTCGGGACC+TGG | 0.512725 | 6.4:-63474574 | MS.gene66313:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6.4:+63473268 | None:intergenic |
| ATGATTCTAACTTCTCCCAT+TGG | 0.519999 | 6.4:-63475221 | MS.gene66313:CDS |
| GTCACCAAAACTATTATATG+TGG | 0.524845 | 6.4:-63473311 | MS.gene66313:CDS |
| GACTACTCCAAAGGAAAGGA+AGG | 0.533383 | 6.4:-63474622 | MS.gene66313:CDS |
| GATATGAATGACCTTCCAAT+GGG | 0.566818 | 6.4:+63475206 | None:intergenic |
| TTCTAACTTCTCCCATTGGA+AGG | 0.569581 | 6.4:-63475217 | MS.gene66313:intron |
| ACTCCGAGCTCATAGACTCC+AGG | 0.575366 | 6.4:+63474556 | None:intergenic |
| TGATATGAATGACCTTCCAA+TGG | 0.576282 | 6.4:+63475205 | None:intergenic |
| TGACTCGCGTCGAGTAGTTG+TGG | 0.583314 | 6.4:-63474485 | MS.gene66313:CDS |
| GGACCTGGAGTCTATGAGCT+CGG | 0.588818 | 6.4:-63474559 | MS.gene66313:CDS |
| AACTACTCGACGCGAGTCAG+TGG | 0.596602 | 6.4:+63474489 | None:intergenic |
| CTGCATCAACTAACGGTTTG+GGG | 0.602107 | 6.4:-63474531 | MS.gene66313:CDS |
| GGAAGACTACTCCAAAGGAA+AGG | 0.612749 | 6.4:-63474626 | MS.gene66313:CDS |
| GGAGTAGCTGCATCAACTAA+CGG | 0.615800 | 6.4:-63474538 | MS.gene66313:CDS |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6.4:-63473357 | MS.gene66313:CDS |
| TTCTATTTGTACAAATACGC+CGG | 0.618742 | 6.4:-63473489 | MS.gene66313:CDS |
| GATTGGGAAGACTACTCCAA+AGG | 0.631907 | 6.4:-63474631 | MS.gene66313:CDS |
| GAACTATCTTAGGACGTGAG+CGG | 0.646264 | 6.4:+63473576 | None:intergenic |
| TCCGATGAAGCAGATAATGG+CGG | 0.694022 | 6.4:-63473632 | MS.gene66313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6.4:63473283-63473302 | None:intergenic | 10.0% |
| !! | AAAAATCAACTTATAGTTAT+TGG | + | chr6.4:63473454-63473473 | None:intergenic | 15.0% |
| !! | ACACATGTATAATAATTAAT+AGG | + | chr6.4:63473312-63473331 | None:intergenic | 15.0% |
| !! | ACTGAAAAATATTGAATTAA+AGG | - | chr6.4:63473523-63473542 | MS.gene66313:CDS | 15.0% |
| !! | CTGAAAAATATTGAATTAAA+GGG | - | chr6.4:63473524-63473543 | MS.gene66313:CDS | 15.0% |
| !!! | AATTATTTTCAGATTCTTAT+TGG | - | chr6.4:63473796-63473815 | MS.gene66313:intron | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6.4:63474570-63474589 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6.4:63474571-63474590 | None:intergenic | 15.0% |
| !!! | TGTTTTTAAATCTAAAAGTA+CGG | - | chr6.4:63473637-63473656 | MS.gene66313:CDS | 15.0% |
| !!! | TTTCAGATAAGTAATTTTTT+GGG | - | chr6.4:63473386-63473405 | MS.gene66313:CDS | 15.0% |
| !!! | TTTTTTAATGCTTTCAATTT+GGG | - | chr6.4:63473416-63473435 | MS.gene66313:CDS | 15.0% |
| !! | AATTAAGAGCTAAGTTATAT+AGG | - | chr6.4:63474391-63474410 | MS.gene66313:intron | 20.0% |
| !! | CAAAATGAACATATACAATA+TGG | + | chr6.4:63474279-63474298 | None:intergenic | 20.0% |
| !! | TCAATTTATTAAGATCAAGA+TGG | - | chr6.4:63474199-63474218 | MS.gene66313:intron | 20.0% |
| !! | TGATGACCATTAAATTAAAT+CGG | + | chr6.4:63473698-63473717 | None:intergenic | 20.0% |
| !!! | AATCTGAATGATTTGAAATA+TGG | - | chr6.4:63473667-63473686 | MS.gene66313:CDS | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6.4:63475153-63475172 | None:intergenic | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6.4:63475082-63475101 | None:intergenic | 20.0% |
| !!! | CTTTTTTAATGCTTTCAATT+TGG | - | chr6.4:63473415-63473434 | MS.gene66313:CDS | 20.0% |
| !!! | GTTTCAGATAAGTAATTTTT+TGG | - | chr6.4:63473385-63473404 | MS.gene66313:CDS | 20.0% |
| !!! | TTCAGATAAGTAATTTTTTG+GGG | - | chr6.4:63473387-63473406 | MS.gene66313:CDS | 20.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6.4:63475221-63475240 | MS.gene66313:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6.4:63475222-63475241 | MS.gene66313:CDS | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6.4:63474938-63474957 | MS.gene66313:intron | 25.0% |
| !! | TGAATGATTTGAAATATGGA+CGG | - | chr6.4:63473671-63473690 | MS.gene66313:CDS | 25.0% |
| !! | TTATATAGGTTTGGAAGTAT+AGG | - | chr6.4:63474405-63474424 | MS.gene66313:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6.4:63475164-63475183 | MS.gene66313:intron | 25.0% |
| AATGCATGAAATGTACTTAC+AGG | + | chr6.4:63474165-63474184 | None:intergenic | 30.0% | |
| AGAGCTAAGTTATATAGGTT+TGG | - | chr6.4:63474396-63474415 | MS.gene66313:intron | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6.4:63474080-63474099 | MS.gene66313:intron | 30.0% | |
| CTGTTCAACAAATGAATCAT+TGG | + | chr6.4:63474615-63474634 | None:intergenic | 30.0% | |
| CTTTCACTCAAAAGAAAGTA+GGG | - | chr6.4:63474760-63474779 | MS.gene66313:intron | 30.0% | |
| GAACATATACAATATGGTCA+CGG | + | chr6.4:63474273-63474292 | None:intergenic | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6.4:63474473-63474492 | MS.gene66313:CDS | 30.0% | |
| GTCACCAAAACTATTATATG+TGG | - | chr6.4:63475146-63475165 | MS.gene66313:intron | 30.0% | |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6.4:63474894-63474913 | None:intergenic | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6.4:63474647-63474666 | MS.gene66313:CDS | 30.0% | |
| TTCTATTTGTACAAATACGC+CGG | - | chr6.4:63474968-63474987 | MS.gene66313:intron | 30.0% | |
| TTCTTATTGGTCCTATTGAT+TGG | - | chr6.4:63473809-63473828 | MS.gene66313:intron | 30.0% | |
| TTTCATGAGATCTTTCTTCA+AGG | - | chr6.4:63474114-63474133 | MS.gene66313:intron | 30.0% | |
| TTTCCCAATTGTTTGTAGAT+GGG | - | chr6.4:63474137-63474156 | MS.gene66313:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6.4:63474081-63474100 | MS.gene66313:intron | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6.4:63474925-63474944 | None:intergenic | 30.0% |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6.4:63475209-63475228 | None:intergenic | 30.0% |
| ! | GGCAACTTGTTTGATTTAAT+TGG | + | chr6.4:63474789-63474808 | None:intergenic | 30.0% |
| ! | TCTTATTGGTCCTATTGATT+GGG | - | chr6.4:63473810-63473829 | MS.gene66313:intron | 30.0% |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6.4:63474810-63474829 | None:intergenic | 30.0% |
| AAATCCGATGAAGCAGATAA+TGG | - | chr6.4:63474822-63474841 | MS.gene66313:intron | 35.0% | |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6.4:63474021-63474040 | MS.gene66313:intron | 35.0% | |
| AGCATTTCAAGAATATCACC+CGG | + | chr6.4:63474700-63474719 | None:intergenic | 35.0% | |
| AGTGAAAGGTAGAAGTGATT+TGG | + | chr6.4:63474748-63474767 | None:intergenic | 35.0% | |
| ATCGATTAACTCACTACAAG+AGG | + | chr6.4:63474465-63474484 | None:intergenic | 35.0% | |
| ATGATTCTAACTTCTCCCAT+TGG | - | chr6.4:63473236-63473255 | MS.gene66313:CDS | 35.0% | |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6.4:63475054-63475073 | MS.gene66313:intron | 35.0% | |
| CACCATTTCTACCATAACAT+TGG | + | chr6.4:63474035-63474054 | None:intergenic | 35.0% | |
| CCTTTCACTCAAAAGAAAGT+AGG | - | chr6.4:63474759-63474778 | MS.gene66313:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6.4:63474030-63474049 | MS.gene66313:intron | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6.4:63474927-63474946 | MS.gene66313:intron | 35.0% | |
| GATATGAATGACCTTCCAAT+GGG | + | chr6.4:63473254-63473273 | None:intergenic | 35.0% | |
| GCTTGGAACACGATTAATAA+CGG | - | chr6.4:63474664-63474683 | MS.gene66313:intron | 35.0% | |
| GTTTCCCAATTGTTTGTAGA+TGG | - | chr6.4:63474136-63474155 | MS.gene66313:intron | 35.0% | |
| TCCAAGTCAGAATCAAAAAG+AGG | - | chr6.4:63475041-63475060 | MS.gene66313:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6.4:63475100-63475119 | MS.gene66313:intron | 35.0% | |
| TGATATGAATGACCTTCCAA+TGG | + | chr6.4:63473255-63473274 | None:intergenic | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6.4:63475194-63475213 | MS.gene66313:intron | 35.0% | |
| ! | GAAACAATGAAAGTCCCTTT+TGG | + | chr6.4:63474098-63474117 | None:intergenic | 35.0% |
| ! | GACGGTCCGATTTAATTTAA+TGG | - | chr6.4:63473689-63473708 | MS.gene66313:intron | 35.0% |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6.4:63475002-63475021 | MS.gene66313:intron | 35.0% |
| !! | CCTACTTTCTTTTGAGTGAA+AGG | + | chr6.4:63474762-63474781 | None:intergenic | 35.0% |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6.4:63475045-63475064 | None:intergenic | 35.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6.4:63475192-63475211 | None:intergenic | 40.0% | |
| AATGGTGCTCATTTGGGTAA+TGG | - | chr6.4:63474048-63474067 | MS.gene66313:intron | 40.0% | |
| ACAATTTCACATCCTTCACG+CGG | - | chr6.4:63473561-63473580 | MS.gene66313:CDS | 40.0% | |
| ACACGATTAATAACGGTCCA+CGG | - | chr6.4:63474671-63474690 | MS.gene66313:intron | 40.0% | |
| ATACAATATGGTCACGGCAA+CGG | + | chr6.4:63474267-63474286 | None:intergenic | 40.0% | |
| CATAACCTGCCAGAAAATTC+GGG | - | chr6.4:63473877-63473896 | MS.gene66313:intron | 40.0% | |
| CCATAACCTGCCAGAAAATT+CGG | - | chr6.4:63473876-63473895 | MS.gene66313:intron | 40.0% | |
| CGAGTAGTTGTGGTTTATCT+AGG | - | chr6.4:63473982-63474001 | MS.gene66313:intron | 40.0% | |
| CGTGAAGGATGTGAAATTGT+TGG | + | chr6.4:63473561-63473580 | None:intergenic | 40.0% | |
| GAGCCCATCTACAAACAATT+GGG | + | chr6.4:63474143-63474162 | None:intergenic | 40.0% | |
| GAGTAGTCTTCCCAATCAAT+AGG | + | chr6.4:63473823-63473842 | None:intergenic | 40.0% | |
| GGTAGAAATGGTGCTCATTT+GGG | - | chr6.4:63474042-63474061 | MS.gene66313:intron | 40.0% | |
| TGAATTTGAACACGCGAGAT+AGG | + | chr6.4:63474860-63474879 | None:intergenic | 40.0% | |
| TGGTAGAAATGGTGCTCATT+TGG | - | chr6.4:63474041-63474060 | MS.gene66313:intron | 40.0% | |
| TGTAGATCCTTCCTTTCCTT+TGG | + | chr6.4:63473845-63473864 | None:intergenic | 40.0% | |
| TTCTAACTTCTCCCATTGGA+AGG | - | chr6.4:63473240-63473259 | MS.gene66313:CDS | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6.4:63474915-63474934 | MS.gene66313:intron | 40.0% |
| ! | GCAACGGTAATCTAGCATTT+TGG | + | chr6.4:63474251-63474270 | None:intergenic | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6.4:63474990-63475009 | None:intergenic | 40.0% |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6.4:63475113-63475132 | None:intergenic | 45.0% | |
| AGCTGCATCAACTAACGGTT+TGG | - | chr6.4:63473924-63473943 | MS.gene66313:intron | 45.0% | |
| CTGCATCAACTAACGGTTTG+GGG | - | chr6.4:63473926-63473945 | MS.gene66313:intron | 45.0% | |
| GAACTATCTTAGGACGTGAG+CGG | + | chr6.4:63474884-63474903 | None:intergenic | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6.4:63473835-63473854 | MS.gene66313:intron | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6.4:63473826-63473845 | MS.gene66313:intron | 45.0% | |
| GCTGCATCAACTAACGGTTT+GGG | - | chr6.4:63473925-63473944 | MS.gene66313:intron | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6.4:63473831-63473850 | MS.gene66313:intron | 45.0% | |
| GGAGCCCATCTACAAACAAT+TGG | + | chr6.4:63474144-63474163 | None:intergenic | 45.0% | |
| GGAGTAGCTGCATCAACTAA+CGG | - | chr6.4:63473919-63473938 | MS.gene66313:intron | 45.0% | |
| ! | TCCGATGAAGCAGATAATGG+CGG | - | chr6.4:63474825-63474844 | MS.gene66313:intron | 45.0% |
| !! | CCGAATTTTCTGGCAGGTTA+TGG | + | chr6.4:63473879-63473898 | None:intergenic | 45.0% |
| ATGATGTCTTGACCGCGTGA+AGG | + | chr6.4:63473576-63473595 | None:intergenic | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6.4:63474985-63475004 | MS.gene66313:intron | 50.0% | |
| GCCGCCATTATCTGCTTCAT+CGG | + | chr6.4:63474829-63474848 | None:intergenic | 50.0% | |
| TCACGCGGTCAAGACATCAT+TGG | - | chr6.4:63473576-63473595 | MS.gene66313:CDS | 50.0% | |
| ! | ACTCCAGGTCCCGAATTTTC+TGG | + | chr6.4:63473889-63473908 | None:intergenic | 50.0% |
| AACTACTCGACGCGAGTCAG+TGG | + | chr6.4:63473971-63473990 | None:intergenic | 55.0% | |
| ACTCCGAGCTCATAGACTCC+AGG | + | chr6.4:63473904-63473923 | None:intergenic | 55.0% | |
| CTGCCAGAAAATTCGGGACC+TGG | - | chr6.4:63473883-63473902 | MS.gene66313:intron | 55.0% | |
| GGACCTGGAGTCTATGAGCT+CGG | - | chr6.4:63473898-63473917 | MS.gene66313:intron | 55.0% | |
| TAATAACGGTCCACGGCGTC+CGG | - | chr6.4:63474678-63474697 | MS.gene66313:intron | 55.0% | |
| TGACTCGCGTCGAGTAGTTG+TGG | - | chr6.4:63473972-63473991 | MS.gene66313:intron | 55.0% | |
| !! | CAGGTCCCGAATTTTCTGGC+AGG | + | chr6.4:63473885-63473904 | None:intergenic | 55.0% |
| AATAACGGTCCACGGCGTCC+GGG | - | chr6.4:63474679-63474698 | MS.gene66313:intron | 60.0% | |
| AGAATATCACCCGGACGCCG+TGG | + | chr6.4:63474691-63474710 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63473202 | 63475277 | 63473202 | ID=MS.gene66313 |
| chr6.4 | mRNA | 63473202 | 63475277 | 63473202 | ID=MS.gene66313.t1;Parent=MS.gene66313 |
| chr6.4 | exon | 63475218 | 63475277 | 63475218 | ID=MS.gene66313.t1.exon1;Parent=MS.gene66313.t1 |
| chr6.4 | CDS | 63475218 | 63475277 | 63475218 | ID=cds.MS.gene66313.t1;Parent=MS.gene66313.t1 |
| chr6.4 | exon | 63474462 | 63474671 | 63474462 | ID=MS.gene66313.t1.exon2;Parent=MS.gene66313.t1 |
| chr6.4 | CDS | 63474462 | 63474671 | 63474462 | ID=cds.MS.gene66313.t1;Parent=MS.gene66313.t1 |
| chr6.4 | exon | 63473202 | 63473705 | 63473202 | ID=MS.gene66313.t1.exon3;Parent=MS.gene66313.t1 |
| chr6.4 | CDS | 63473202 | 63473705 | 63473202 | ID=cds.MS.gene66313.t1;Parent=MS.gene66313.t1 |
| Gene Sequence |
| Protein sequence |
