Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66328.t1 | XP_003620925.1 | 90.5 | 305 | 29 | 0 | 9 | 313 | 64 | 368 | 3.20E-158 | 567.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66328.t1 | F4K933 | 39.2 | 306 | 157 | 8 | 17 | 310 | 83 | 371 | 3.0e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66328.t1 | G7KJT8 | 90.5 | 305 | 29 | 0 | 9 | 313 | 64 | 368 | 2.3e-158 | 567.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66328.t1 | TF | HRT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66328.t1 | MTR_6g092520 | 90.492 | 305 | 29 | 0 | 9 | 313 | 64 | 368 | 0.0 | 573 |
| MS.gene66328.t1 | MTR_7g090060 | 70.740 | 311 | 80 | 2 | 9 | 308 | 68 | 378 | 2.49e-153 | 434 |
| MS.gene66328.t1 | MTR_6g092480 | 44.167 | 120 | 52 | 2 | 66 | 171 | 9 | 127 | 3.10e-25 | 106 |
| MS.gene66328.t1 | MTR_6g092500 | 62.500 | 48 | 18 | 0 | 9 | 56 | 106 | 153 | 1.16e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66328.t1 | AT5G56780 | 39.216 | 306 | 157 | 8 | 17 | 310 | 83 | 371 | 9.53e-57 | 191 |
| MS.gene66328.t1 | AT5G56770 | 35.185 | 162 | 67 | 6 | 25 | 185 | 129 | 253 | 4.40e-18 | 82.4 |
| MS.gene66328.t1 | AT4G26170 | 33.146 | 178 | 97 | 4 | 136 | 309 | 234 | 393 | 1.48e-17 | 83.6 |
| MS.gene66328.t1 | AT4G26170 | 32.237 | 152 | 60 | 4 | 197 | 306 | 354 | 504 | 1.22e-11 | 65.5 |
Find 57 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6.4:+63247017 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6.4:-63247158 | MS.gene66328:CDS |
| GGCAACATGCTTGATTTAAT+TGG | 0.190041 | 6.4:+63247310 | None:intergenic |
| CGAGTAGTTGTGGTTTATTT+AGG | 0.242234 | 6.4:-63248187 | MS.gene66328:CDS |
| AATTCCACATATAATAGTTT+TGG | 0.286040 | 6.4:+63246946 | None:intergenic |
| GTTTCCCAATTGTTTATAGA+TGG | 0.290530 | 6.4:-63248033 | MS.gene66328:CDS |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6.4:-63246902 | MS.gene66328:CDS |
| TAATAATGGTCCACGGCGTC+CGG | 0.310710 | 6.4:-63247434 | MS.gene66328:CDS |
| GTTGTATCTTGAACTATCTT+AGG | 0.319694 | 6.4:+63247205 | None:intergenic |
| TGGTAGAAATGGAGCTCATT+TGG | 0.329770 | 6.4:-63248128 | MS.gene66328:CDS |
| AAAAGATATCATGAACATAA+AGG | 0.339627 | 6.4:-63246875 | MS.gene66328:CDS |
| AGTGAAGGGTAGAAGTGATT+TGG | 0.349328 | 6.4:+63247351 | None:intergenic |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6.4:+63247289 | None:intergenic |
| CTCCAATGTTATGGTAGAAA+TGG | 0.355200 | 6.4:-63248139 | MS.gene66328:CDS |
| AGCTCTGTCGACTAGCGGTT+TGG | 0.358465 | 6.4:-63248245 | MS.gene66328:intron |
| GAAACAATGAACGTCCCTTT+TGG | 0.367640 | 6.4:+63248074 | None:intergenic |
| ATGATTCTAGCTTCTCTCAT+TGG | 0.373036 | 6.4:-63248966 | MS.gene66328:CDS |
| TTTCATGAAATCTTTCTTCA+AGG | 0.381460 | 6.4:-63248055 | MS.gene66328:CDS |
| ATTTGAATCTTCTCACCAAA+AGG | 0.382515 | 6.4:-63248089 | MS.gene66328:CDS |
| AGAATTTGAACACGCGAGAT+AGG | 0.386624 | 6.4:+63247239 | None:intergenic |
| GCTTGGAACACAATTAATAA+TGG | 0.386741 | 6.4:-63247448 | MS.gene66328:CDS |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | 6.4:+63248028 | None:intergenic |
| GCTCTGTCGACTAGCGGTTT+GGG | 0.400184 | 6.4:-63248244 | MS.gene66328:intron |
| GGTAGAAATGGAGCTCATTT+GGG | 0.402941 | 6.4:-63248127 | MS.gene66328:CDS |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6.4:+63246986 | None:intergenic |
| AAAGATATCATGAACATAAA+GGG | 0.431404 | 6.4:-63246874 | MS.gene66328:CDS |
| TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6.4:+63247501 | None:intergenic |
| GCCGCCATTGTCTGCTTCAT+CGG | 0.439254 | 6.4:+63247270 | None:intergenic |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6.4:-63247169 | MS.gene66328:CDS |
| AATGGAGCTCATTTGGGTAA+TGG | 0.455845 | 6.4:-63248121 | MS.gene66328:CDS |
| GTTAGGTGTCATGAACATAA+AGG | 0.469142 | 6.4:-63247094 | MS.gene66328:CDS |
| TTTCCCAATTGTTTATAGAT+GGG | 0.470064 | 6.4:-63248032 | MS.gene66328:CDS |
| AGAACAAGACTCCAATGTTA+TGG | 0.472021 | 6.4:-63248148 | MS.gene66328:CDS |
| TGAGTACATTTGATTATGCT+TGG | 0.472258 | 6.4:-63247465 | MS.gene66328:CDS |
| AATAATGGTCCACGGCGTCC+GGG | 0.492605 | 6.4:-63247433 | MS.gene66328:CDS |
| CAGTTGAGATTCTGTTTGCA+AGG | 0.499330 | 6.4:+63247489 | None:intergenic |
| ATACTCAACAAAATTTCATC+AGG | 0.499424 | 6.4:-63247397 | MS.gene66328:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.501782 | 6.4:+63248029 | None:intergenic |
| CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6.4:-63247336 | MS.gene66328:CDS |
| CTCCATTTCTACCATAACAT+TGG | 0.504477 | 6.4:+63248137 | None:intergenic |
| TTTGAATCTTCTCACCAAAA+GGG | 0.504759 | 6.4:-63248088 | MS.gene66328:CDS |
| CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6.4:-63247337 | MS.gene66328:CDS |
| CGACTTGCATCGAGTAGTTG+TGG | 0.511029 | 6.4:-63248197 | MS.gene66328:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6.4:+63246907 | None:intergenic |
| GTCACCAAAACTATTATATG+TGG | 0.524845 | 6.4:-63246950 | MS.gene66328:CDS |
| TTCTAGCTTCTCTCATTGGA+AGG | 0.570435 | 6.4:-63248962 | MS.gene66328:intron |
| GTTGAACAGATGCAGACCAA+GGG | 0.612709 | 6.4:-63247517 | MS.gene66328:intron |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6.4:-63246996 | MS.gene66328:CDS |
| TGTTGAACAGATGCAGACCA+AGG | 0.619532 | 6.4:-63247518 | MS.gene66328:intron |
| AGAATATCACCCGGACGCCG+TGG | 0.625598 | 6.4:+63247424 | None:intergenic |
| TTCTATTTGTACAAATACGC+CGG | 0.636888 | 6.4:-63247128 | MS.gene66328:CDS |
| CACAACTACTCGATGCAAGT+CGG | 0.662201 | 6.4:+63248198 | None:intergenic |
| ACACAATTAATAATGGTCCA+CGG | 0.669239 | 6.4:-63247441 | MS.gene66328:CDS |
| TCCGATGAAGCAGACAATGG+CGG | 0.674520 | 6.4:-63247271 | MS.gene66328:CDS |
| AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6.4:-63247274 | MS.gene66328:CDS |
| AGTATTTCAAGAATATCACC+CGG | 0.675652 | 6.4:+63247415 | None:intergenic |
| GAACTATCTTAGGAAGCGAG+CGG | 0.698053 | 6.4:+63247215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6.4:63246888-63246907 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6.4:63247405-63247424 | None:intergenic | 10.0% |
| !!! | TCATTTATATTTAATCTTTT+GGG | + | chr6.4:63248206-63248225 | None:intergenic | 10.0% |
| !!! | TTCATTTATATTTAATCTTT+TGG | + | chr6.4:63248207-63248226 | None:intergenic | 10.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6.4:63247418-63247437 | MS.gene66328:CDS | 15.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6.4:63247300-63247319 | MS.gene66328:CDS | 15.0% |
| !! | AAAAGATATCATGAACATAA+AGG | - | chr6.4:63248932-63248951 | MS.gene66328:intron | 20.0% |
| !! | AAAGATATCATGAACATAAA+GGG | - | chr6.4:63248933-63248952 | MS.gene66328:intron | 20.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6.4:63246992-63247011 | None:intergenic | 20.0% |
| !! | AATTAAGAGCTAAGTTATAT+AGG | - | chr6.4:63248027-63248046 | MS.gene66328:CDS | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6.4:63247186-63247205 | MS.gene66328:CDS | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6.4:63247946-63247965 | None:intergenic | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6.4:63247187-63247206 | MS.gene66328:CDS | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6.4:63248864-63248883 | None:intergenic | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6.4:63248793-63248812 | None:intergenic | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6.4:63247336-63247355 | None:intergenic | 20.0% |
| ! | ATACTCAACAAAATTTCATC+AGG | - | chr6.4:63248410-63248429 | MS.gene66328:intron | 25.0% |
| ! | CAAAATGAGCATTTACAATA+TGG | + | chr6.4:63247917-63247936 | None:intergenic | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+AGG | - | chr6.4:63247752-63247771 | MS.gene66328:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6.4:63247775-63247794 | MS.gene66328:intron | 25.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6.4:63247435-63247454 | MS.gene66328:CDS | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6.4:63248649-63248668 | MS.gene66328:intron | 25.0% |
| !! | TATCTTTTTCTTCCTTTAAC+TGG | + | chr6.4:63248920-63248939 | None:intergenic | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6.4:63248875-63248894 | MS.gene66328:intron | 25.0% |
| AATGCATGAAATGTACTTAC+AGG | + | chr6.4:63247803-63247822 | None:intergenic | 30.0% | |
| ACACAATTAATAATGGTCCA+CGG | - | chr6.4:63248366-63248385 | MS.gene66328:intron | 30.0% | |
| AGAGCTAAGTTATATAGGTT+TGG | - | chr6.4:63248032-63248051 | MS.gene66328:CDS | 30.0% | |
| AGGTTATGGATTCTATATCT+TGG | + | chr6.4:63247504-63247523 | None:intergenic | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6.4:63248395-63248414 | None:intergenic | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6.4:63247718-63247737 | MS.gene66328:intron | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6.4:63248109-63248128 | MS.gene66328:CDS | 30.0% | |
| GCTTGGAACACAATTAATAA+TGG | - | chr6.4:63248359-63248378 | MS.gene66328:intron | 30.0% | |
| GTCACCAAAACTATTATATG+TGG | - | chr6.4:63248857-63248876 | MS.gene66328:intron | 30.0% | |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6.4:63248605-63248624 | None:intergenic | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6.4:63247774-63247793 | MS.gene66328:intron | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6.4:63248342-63248361 | MS.gene66328:intron | 30.0% | |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6.4:63247343-63247362 | MS.gene66328:CDS | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6.4:63248041-63248060 | MS.gene66328:CDS | 30.0% | |
| TTCTATTTGTACAAATACGC+CGG | - | chr6.4:63248679-63248698 | MS.gene66328:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6.4:63247719-63247738 | MS.gene66328:intron | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6.4:63248636-63248655 | None:intergenic | 30.0% |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6.4:63248521-63248540 | None:intergenic | 30.0% |
| !!! | TTCAGCTAAGTCATTTTTCT+GGG | - | chr6.4:63247056-63247075 | MS.gene66328:CDS | 30.0% |
| !!! | TTTCAGCTAAGTCATTTTTC+TGG | - | chr6.4:63247055-63247074 | MS.gene66328:CDS | 30.0% |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6.4:63247659-63247678 | MS.gene66328:intron | 35.0% | |
| ATCGATTAACTCACAACAAG+AGG | + | chr6.4:63248101-63248120 | None:intergenic | 35.0% | |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6.4:63248765-63248784 | MS.gene66328:intron | 35.0% | |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6.4:63248471-63248490 | MS.gene66328:intron | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6.4:63247620-63247639 | MS.gene66328:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6.4:63247668-63247687 | MS.gene66328:intron | 35.0% | |
| CTCCATTTCTACCATAACAT+TGG | + | chr6.4:63247673-63247692 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6.4:63248638-63248657 | MS.gene66328:intron | 35.0% | |
| GAGCATTTACAATATGGTCA+AGG | + | chr6.4:63247911-63247930 | None:intergenic | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr6.4:63247781-63247800 | None:intergenic | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6.4:63248500-63248519 | None:intergenic | 35.0% | |
| TCCAAGTCAGAATCAAAAAG+AGG | - | chr6.4:63248752-63248771 | MS.gene66328:intron | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6.4:63247449-63247468 | MS.gene66328:CDS | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6.4:63248811-63248830 | MS.gene66328:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6.4:63248905-63248924 | MS.gene66328:intron | 35.0% | |
| TTACAATATGGTCAAGGCAA+TGG | + | chr6.4:63247905-63247924 | None:intergenic | 35.0% | |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6.4:63247448-63247467 | MS.gene66328:CDS | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6.4:63247889-63247908 | None:intergenic | 35.0% |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6.4:63248713-63248732 | MS.gene66328:intron | 35.0% |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6.4:63246841-63246860 | MS.gene66328:CDS | 35.0% |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6.4:63248473-63248492 | None:intergenic | 35.0% |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6.4:63248756-63248775 | None:intergenic | 35.0% |
| !!! | TCAGCTAAGTCATTTTTCTG+GGG | - | chr6.4:63247057-63247076 | MS.gene66328:CDS | 35.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6.4:63248533-63248552 | MS.gene66328:intron | 40.0% | |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6.4:63248903-63248922 | None:intergenic | 40.0% | |
| AATGGAGCTCATTTGGGTAA+TGG | - | chr6.4:63247686-63247705 | MS.gene66328:intron | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6.4:63248571-63248590 | None:intergenic | 40.0% | |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6.4:63247352-63247371 | MS.gene66328:CDS | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6.4:63248459-63248478 | None:intergenic | 40.0% | |
| ATAACCTGCCACAAAATTCG+GGG | - | chr6.4:63247517-63247536 | MS.gene66328:intron | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6.4:63248321-63248340 | None:intergenic | 40.0% | |
| CATAACCTGCCACAAAATTC+GGG | - | chr6.4:63247516-63247535 | MS.gene66328:intron | 40.0% | |
| CCATAACCTGCCACAAAATT+CGG | - | chr6.4:63247515-63247534 | MS.gene66328:intron | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6.4:63248470-63248489 | MS.gene66328:intron | 40.0% | |
| GACTACTCCAAAGAAAAGGA+AGG | - | chr6.4:63247474-63247493 | MS.gene66328:CDS | 40.0% | |
| GGAAGACTACTCCAAAGAAA+AGG | - | chr6.4:63247470-63247489 | MS.gene66328:CDS | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | + | chr6.4:63247782-63247801 | None:intergenic | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6.4:63247680-63247699 | MS.gene66328:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6.4:63247679-63247698 | MS.gene66328:intron | 40.0% | |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6.4:63247736-63247755 | None:intergenic | 40.0% |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6.4:63248626-63248645 | MS.gene66328:intron | 40.0% |
| ! | TGGACAACCTTCCTTTTCTT+TGG | + | chr6.4:63247484-63247503 | None:intergenic | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6.4:63248656-63248675 | MS.gene66328:intron | 40.0% |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6.4:63248474-63248493 | None:intergenic | 40.0% |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6.4:63246845-63246864 | MS.gene66328:CDS | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6.4:63248701-63248720 | None:intergenic | 40.0% |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6.4:63248824-63248843 | None:intergenic | 45.0% | |
| CACAACTACTCGATGCAAGT+CGG | + | chr6.4:63247612-63247631 | None:intergenic | 45.0% | |
| GAACTATCTTAGGAAGCGAG+CGG | + | chr6.4:63248595-63248614 | None:intergenic | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6.4:63247462-63247481 | None:intergenic | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6.4:63248290-63248309 | MS.gene66328:intron | 45.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6.4:63247238-63247257 | MS.gene66328:CDS | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6.4:63248289-63248308 | MS.gene66328:intron | 45.0% | |
| ! | CCGAATTTTGTGGCAGGTTA+TGG | + | chr6.4:63247518-63247537 | None:intergenic | 45.0% |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6.4:63247610-63247629 | MS.gene66328:intron | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6.4:63248696-63248715 | MS.gene66328:intron | 50.0% | |
| TAATAATGGTCCACGGCGTC+CGG | - | chr6.4:63248373-63248392 | MS.gene66328:intron | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6.4:63248536-63248555 | MS.gene66328:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6.4:63248309-63248328 | None:intergenic | 50.0% |
| AATAATGGTCCACGGCGTCC+GGG | - | chr6.4:63248374-63248393 | MS.gene66328:intron | 55.0% | |
| ACCTGCCACAAAATTCGGGG+CGG | - | chr6.4:63247520-63247539 | MS.gene66328:intron | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6.4:63248540-63248559 | None:intergenic | 55.0% | |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6.4:63247562-63247581 | MS.gene66328:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6.4:63247563-63247582 | MS.gene66328:intron | 55.0% |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6.4:63247557-63247576 | MS.gene66328:intron | 55.0% |
| AGAATATCACCCGGACGCCG+TGG | + | chr6.4:63248386-63248405 | None:intergenic | 60.0% | |
| CCTGCCACAAAATTCGGGGC+GGG | - | chr6.4:63247521-63247540 | MS.gene66328:intron | 60.0% | |
| ! | GACTCCCGCCCCGAATTTTG+TGG | + | chr6.4:63247528-63247547 | None:intergenic | 60.0% |
| GGGGCGGGAGTCTATGAGCT+CGG | - | chr6.4:63247536-63247555 | MS.gene66328:intron | 65.0% | |
| ! | CCCGCCCCGAATTTTGTGGC+AGG | + | chr6.4:63247524-63247543 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63246841 | 63248988 | 63246841 | ID=MS.gene66328 |
| chr6.4 | mRNA | 63246841 | 63248988 | 63246841 | ID=MS.gene66328.t1;Parent=MS.gene66328 |
| chr6.4 | exon | 63248963 | 63248988 | 63248963 | ID=MS.gene66328.t1.exon1;Parent=MS.gene66328.t1 |
| chr6.4 | CDS | 63248963 | 63248988 | 63248963 | ID=cds.MS.gene66328.t1;Parent=MS.gene66328.t1 |
| chr6.4 | exon | 63248027 | 63248252 | 63248027 | ID=MS.gene66328.t1.exon2;Parent=MS.gene66328.t1 |
| chr6.4 | CDS | 63248027 | 63248252 | 63248027 | ID=cds.MS.gene66328.t1;Parent=MS.gene66328.t1 |
| chr6.4 | exon | 63246841 | 63247530 | 63246841 | ID=MS.gene66328.t1.exon3;Parent=MS.gene66328.t1 |
| chr6.4 | CDS | 63246841 | 63247530 | 63246841 | ID=cds.MS.gene66328.t1;Parent=MS.gene66328.t1 |
| Gene Sequence |
| Protein sequence |
