AlfalfaGEDB | MS.gene66427

M. sativa cultivar XinJiangDaYe / MS.gene66427

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66427.t1	KEH27208.1	92	414	28	1	448	861	572	980	1.90E-213	752.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66427.t1	Q9FGL5	36.6	407	230	7	448	838	540	934	4.4e-65	251.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66427.t1	A0A072UDL5	92.0	414	28	1	448	861	572	980	1.4e-213	752.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66427.t1	MTR_6g088755	81.977	860	126	2	26	861	126	980	0.0	1400
MS.gene66427.t1	MTR_6g088755	32.573	307	199	5	17	321	286	586	7.19e-35	144
MS.gene66427.t1	MTR_6g088755	24.731	372	202	4	175	468	82	453	1.76e-25	114
MS.gene66427.t1	MTR_6g088755	30.526	285	191	5	181	459	64	347	7.47e-25	112
MS.gene66427.t1	MTR_6g088770	71.995	832	160	4	21	822	73	861	0.0	1145
MS.gene66427.t1	MTR_6g088770	32.459	305	202	3	17	321	244	544	4.54e-35	144
MS.gene66427.t1	MTR_6g088770	28.881	277	184	5	195	459	30	305	1.29e-19	94.7
MS.gene66427.t1	MTR_6g088785	64.971	865	269	7	17	850	128	989	0.0	1055
MS.gene66427.t1	MTR_6g088785	30.471	361	224	5	100	456	89	426	6.74e-35	144
MS.gene66427.t1	MTR_6g088785	34.471	293	186	5	181	468	75	366	1.98e-31	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66427.t1	AT5G25930	47.608	857	412	10	17	842	118	968	0.0	756
MS.gene66427.t1	AT5G25930	28.736	435	229	9	63	467	68	451	9.46e-36	146
MS.gene66427.t1	AT5G25930	31.579	323	204	10	178	489	62	378	1.26e-26	117
MS.gene66427.t1	AT5G25930	32.083	240	154	5	15	250	359	593	7.80e-22	102
MS.gene66427.t1	AT5G25930	29.224	219	143	7	248	456	60	276	5.90e-13	73.6
MS.gene66427.t1	AT5G65710	37.088	879	477	18	15	837	128	986	2.41e-167	512
MS.gene66427.t1	AT5G65710	26.964	471	227	11	129	484	71	539	5.66e-31	131
MS.gene66427.t1	AT5G65710	35.802	162	101	2	12	173	437	595	3.49e-17	87.4
MS.gene66427.t1	AT1G28440	36.364	869	493	13	17	843	115	965	6.52e-167	511
MS.gene66427.t1	AT1G28440	29.912	341	200	9	129	459	57	368	1.63e-29	127

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Find 148 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGTCATTAGCTATGT+TGG	0.421284	6.3:+82374296	MS.gene66427:CDS
AACAAGTTACCAATTTCATC+AGG	0.419514	6.3:-82372578	None:intergenic
AACACCATGTCAGCTTTGGT+TGG	0.531014	6.3:+82374528	MS.gene66427:CDS
AACATAGCAGCCTTGACAAT+TGG	0.465526	6.3:+82374262	MS.gene66427:CDS
AACATTCATCTCTTGCACAG+TGG	0.662090	6.3:+82375009	MS.gene66427:CDS
AACCAACATGAGACGTTGGT+TGG	0.576573	6.3:-82373832	None:intergenic
AACCAACATTGGAAAATTCA+TGG	0.411476	6.3:+82373944	MS.gene66427:CDS
AACCAACCAACGTCTCATGT+TGG	0.613564	6.3:+82373830	MS.gene66427:CDS
AACCTCACCCTTTGCAAGTC+TGG	0.276995	6.3:+82373799	MS.gene66427:CDS
AACGTCTCATGTTGGTTTCT+TGG	0.278643	6.3:+82373838	MS.gene66427:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGTCATTAGCTATGT+TGG	+	chr6.3:82374296-82374315	MS.gene66427:CDS	30.0%
AACAAGTTACCAATTTCATC+AGG	-	chr6.3:82372581-82372600	None:intergenic	30.0%
AACCAACATTGGAAAATTCA+TGG	+	chr6.3:82373944-82373963	MS.gene66427:CDS	30.0%
AAGATTGATGTATTCAGCTT+TGG	+	chr6.3:82374936-82374955	MS.gene66427:CDS	30.0%
ACCAAACTTTGAATGTCATA+AGG	-	chr6.3:82372437-82372456	None:intergenic	30.0%
ACCAACATTGGAAAATTCAT+GGG	+	chr6.3:82373945-82373964	MS.gene66427:CDS	30.0%
ACGACAGAACAAAATATCAT+CGG	+	chr6.3:82374021-82374040	MS.gene66427:CDS	30.0%
ATGTATGGTTCAAATTTGGT+TGG	+	chr6.3:82372698-82372717	MS.gene66427:CDS	30.0%
CTGTCAATGAATAACTTTGT+TGG	+	chr6.3:82372404-82372423	MS.gene66427:intron	30.0%
CTTGATCAAAATCAGCTAAA+AGG	+	chr6.3:82373478-82373497	MS.gene66427:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	82372165	82375277	82372165	ID=MS.gene66427
chr6.3	mRNA	82372165	82375277	82372165	ID=MS.gene66427.t1;Parent=MS.gene66427
chr6.3	exon	82372165	82372239	82372165	ID=MS.gene66427.t1.exon1;Parent=MS.gene66427.t1
chr6.3	CDS	82372165	82372239	82372165	ID=cds.MS.gene66427.t1;Parent=MS.gene66427.t1
chr6.3	exon	82372431	82374573	82372431	ID=MS.gene66427.t1.exon2;Parent=MS.gene66427.t1
chr6.3	CDS	82372431	82374573	82372431	ID=cds.MS.gene66427.t1;Parent=MS.gene66427.t1
chr6.3	exon	82374907	82375277	82374907	ID=MS.gene66427.t1.exon3;Parent=MS.gene66427.t1
chr6.3	CDS	82374907	82375277	82374907	ID=cds.MS.gene66427.t1;Parent=MS.gene66427.t1

Gene Sequence

>MS.gene66427

ATGCATCTTTTCTCAACCACTGGAACTCATCAAACACCTCTTTTTGTTCTTGGCCAGAAGTCACTTGCACCAAAGGTTCTGTCACAGGATTGACTTTGGTCAACTCCAACATAACTCAAACTATACCTTCTTTCATATGTGACCTTCAAAACCTCACACATGTTGATTTCAGCGAAAATTTCATTCCTGGTGAGTTTCCAAAATATCTATATAAATGTTCCAAGCTTGAGTATCTTGATCTGTCAATGAATAACTTTGTTGGCAAGATTCCTTATGACATTCAAAGTTTGGTTCATTTGCAATATCTCAACCTTGGTTCAACCTATTTCAGTGGTGATATTCCTTCTAGTATTGGAAAGCTTAAGGATTTGAGATTCCTGCACCTTCAATATAGTTCATTTGATGGTACTTTTCCTGATGAAATTGGTAACTTGTTCAACCTTGAACTCTTGGATATGTCCTCTAATTATTTGTTGCCTCCTTTGAAGCTTCCATTAACCATAACCAAGTTGAAAAAATTGAAACTTTTTTACATGTATGGTTCAAATTTGGTTGGGGAAATTCCTGAGGCTATTGGTGAAATGGTTGCATTGGAGAACTTGGATTTATCAAATAATAGTTTAACTGGAAAAATTCCTAGTGGTTTGTTCTTGCTTAAGAATTTGAGCATAGTGTACCTTTACAGAAATAGTCTCTTTGGAGAGATGCCAAATGTGGTTGAAGCATTGAATTTAACAGTGTTGGATTTGTACAAGAACAATTTGTCAGGAGAGATTCCACAAAGCATAGGAAATCTTAAATCTTTAACATATTTTGTTGTCACTATGAACAAGTTTTCAGGTACACTTCCTTCTGATTTTGGTCTTTACTCAAAGCTTGAATCTTTTCAAATTGCAATGAACAATTTTAAGGGAAAGTTACCAGAGAACTTGTGTTATCATGGTAAGTTACGAATTTTCGCTGCTTATGAAAATAATTTAAGTGGTGAGTTGCCAAAATCAATTGAAAATTGTAGCAGCTTGAATCTGCTCAAAATTTACAAGAATGAATTTTCTGGTAAAATTCCTGGTGGACCATGGATTTTCAATTTGGTGACTTTCATGATAAGTCATAATAAGTTCACTGGTGAAATGCCTCAAAACTTTTCTTCAAGTATTTCACTTTTTGATATAAGTTACAATCAATTTTATGGTGGAATTCCAATTGGAGTATCTTCTTGGACTAATGTGATTGAGTTTATAGCAAGCAAGAATTATCTTAATGGAAGTATTCCTCAAGAGTTAACAACTCTTCCTAATCTTGAAAGACTGTTGCTTGATCAAAATCAGCTAAAAGGGTCACTTCCATCTGATGTAATATCATGGAAATCCTTGGTTACTTTGAATTTGAGCCAAAATCAACTTAATGGACAAATTCCAATTTCAATTGGTCATTTACCTTCCCTTAGTGTTCTTGATCTATCAGAAAATCAATTATCCGGCGAAATACCTTCTATACTCACACATCTCAGAAGTCTCAATCTCATTCTATCATCCAACCATTTAACAGGAAGAGTTCCAATTGAATTTGAAAATTCAGCTTATGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGTTGATACACAAGCATTGAACCTCACCCTTTGCAAGTCTGGCCTTAAAAAACCAACCAACGTCTCATGTTGGTTTCTTGGTTTGATTATTAGCCTAATTGTGGTGACTTTGTTGTTCGTTTTGTTGGCATCGTTCAAGATCATCAACCATTACGGAAAAAGAGAACCAACATTGGAAAATTCATGGGAGCTCATTTCATTTCAAAGGCTAAGTTTCACAGAATCAACCATAGTTTCCTCAACGACAGAACAAAATATCATCGGAAGTGGAGGATTCGGAACGGTATACCGCATTCCAGTTGACGGTTTAACCTATGTTGCTGTGAAAAAAATCAAGAGCAACAGAAATTTAAGGCAAGAGCTTGAAGCTTCGTTTCGGGCCGAAGTTAGAATATTGAGCAATATTCGACATCGGAACATTGTGAAGTTGCTGTGTTGTATCTCTAACGAGGATTCTATGATGCTTGTGTATGAGTATATGGAACATAGCAGCCTTGACAATTGGCTGCACAACAAAAATGAGTCATTAGCTATGTTGGATTCGGTGCAACATGTCGTCCTTGATTGGCCAAAGCGATTGCATATAGCCATTGGGATTGCTCATGGTTTGTGCTATATGCACGATGATTGCTCGCCTCCAATAATTCATCGCGATATAAAAACAAGCAACATACTTTTGGATTCTGAATTCAATGCAAAAGTTGCTGATTTTGGCTTTGCTAGATTCTTAATGAAGCCAGGACAGTTTAACACCATGTCAGCTTTGGTTGGATCATTTGGTTATATGGCTCCAGGTAAAATGAACCTCATGCCAATTCCTTTGTTTTTTCTTAATAACAAATATATTCCTCATTTAACATTTTCTAATATGCATGATTTTTTCCGTCAGAAAGATTAGTTTGTCAGACAAGCAAAACTAAGCAGTCTAGATTATTTTTTCATTTTCTTAAAAGTCGTAACAAACGGATGAAACTTTTGTAACATTTGATGATAAAAAGAAATTGTCTAAATATGATCTAAATGTGTTTACAAAATTGTTAACAATGATTGTTCTTAAAGAAAGCTGAAACAAACAGGTCCTGAACTTAAGTTTGATCTAAATGTGTTTTGTAATGAATGAAATGCAGAATATGTTCAAACAACTAGAGTCAATGAAAAGATTGATGTATTCAGCTTTGGTGTTATCCTATTGGAACTTACTACCGGTAAAAAAGCTACCTGTGGTGATGAACATTCATCTCTTGCACAGTGGGCTTGGCGCCACATTCAAGCAGAAAGCAATATAGAAGAGTTGCTTGACAATGAAGTAATGGAACAAAGTTGTTTGGATGAAATGTGCAGCATTTTCAAACTTGGGATAATGTGTACTGCTACACGTCCTTCTAGTAGACCTTCCATGAAGAAGGTGTTACACACATTGCTTAGAAGTGAAGGAGGGATTGTGTTCAGACAGAGGAATGATATTGTCGGGGAATATGACATTGTTCCATTTCTTTAA

Protein sequence

>MS.gene66427.t1

MHLFSTTGTHQTPLFVLGQKSLAPKIPYDIQSLVHLQYLNLGSTYFSGDIPSSIGKLKDLRFLHLQYSSFDGTFPDEIGNLFNLELLDMSSNYLLPPLKLPLTITKLKKLKLFYMYGSNLVGEIPEAIGEMVALENLDLSNNSLTGKIPSGLFLLKNLSIVYLYRNSLFGEMPNVVEALNLTVLDLYKNNLSGEIPQSIGNLKSLTYFVVTMNKFSGTLPSDFGLYSKLESFQIAMNNFKGKLPENLCYHGKLRIFAAYENNLSGELPKSIENCSSLNLLKIYKNEFSGKIPGGPWIFNLVTFMISHNKFTGEMPQNFSSSISLFDISYNQFYGGIPIGVSSWTNVIEFIASKNYLNGSIPQELTTLPNLERLLLDQNQLKGSLPSDVISWKSLVTLNLSQNQLNGQIPISIGHLPSLSVLDLSENQLSGEIPSILTHLRSLNLILSSNHLTGRVPIEFENSAYDRSFLNNSGLCVDTQALNLTLCKSGLKKPTNVSCWFLGLIISLIVVTLLFVLLASFKIINHYGKREPTLENSWELISFQRLSFTESTIVSSTTEQNIIGSGGFGTVYRIPVDGLTYVAVKKIKSNRNLRQELEASFRAEVRILSNIRHRNIVKLLCCISNEDSMMLVYEYMEHSSLDNWLHNKNESLAMLDSVQHVVLDWPKRLHIAIGIAHGLCYMHDDCSPPIIHRDIKTSNILLDSEFNAKVADFGFARFLMKPGQFNTMSALVGSFGYMAPEYVQTTRVNEKIDVFSFGVILLELTTGKKATCGDEHSSLAQWAWRHIQAESNIEELLDNEVMEQSCLDEMCSIFKLGIMCTATRPSSRPSMKKVLHTLLRSEGGIVFRQRNDIVGEYDIVPFL