AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66448

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66448.t1 MTR_1g018090 90.935 353 27 3 1 352 1 349 0.0 596
MS.gene66448.t1 MTR_1g018090 91.562 320 22 3 1 319 1 316 0.0 522
MS.gene66448.t1 MTR_3g103030 49.474 380 120 12 1 368 1 320 9.17e-97 291
MS.gene66448.t1 MTR_5g005110 52.821 195 78 5 179 363 120 310 4.80e-51 173
MS.gene66448.t1 MTR_1g106460 51.579 190 69 5 189 363 143 324 5.41e-49 168
MS.gene66448.t1 MTR_1g106470 51.124 178 81 3 190 365 111 284 7.22e-47 161
MS.gene66448.t1 MTR_1g106480 55.000 120 21 2 276 365 38 154 7.96e-34 123
MS.gene66448.t1 MTR_5g079500 65.000 60 21 0 286 345 227 286 1.95e-22 96.7
MS.gene66448.t1 MTR_5g005110 45.270 148 67 5 179 316 120 263 1.73e-21 93.2
MS.gene66448.t1 MTR_4g131160 52.564 78 37 0 263 340 182 259 1.34e-19 89.7
MS.gene66448.t1 MTR_4g131160 52.564 78 37 0 263 340 185 262 1.45e-19 89.7
MS.gene66448.t1 MTR_8g093500 66.071 56 19 0 286 341 123 178 1.20e-18 85.1
MS.gene66448.t1 MTR_3g101810 62.963 54 20 0 286 339 180 233 8.67e-18 82.8
MS.gene66448.t1 MTR_1g106470 41.221 131 71 3 190 318 111 237 5.95e-17 79.7
MS.gene66448.t1 MTR_7g069590 56.364 55 24 0 284 338 33 87 8.90e-17 77.0
MS.gene66448.t1 MTR_1g080890 56.923 65 28 0 276 340 192 256 1.06e-16 80.9
MS.gene66448.t1 MTR_1g106460 39.860 143 61 5 189 315 143 276 1.17e-16 79.7
MS.gene66448.t1 MTR_4g070320 40.517 116 62 3 230 340 94 207 4.80e-15 75.9
MS.gene66448.t1 MTR_4g033295 57.576 66 27 1 276 340 117 182 3.84e-14 70.9
MS.gene66448.t1 MTR_4g033295 55.224 67 29 1 276 341 117 183 3.92e-14 70.5
MS.gene66448.t1 MTR_3g116770 38.136 118 67 3 226 340 141 255 9.94e-14 72.4
MS.gene66448.t1 MTR_3g116770 38.136 118 67 3 226 340 141 255 1.02e-13 72.4
MS.gene66448.t1 MTR_5g037250 34.307 137 70 3 224 340 40 176 5.63e-13 68.2
MS.gene66448.t1 MTR_1g019240 35.354 99 59 1 261 354 64 162 8.15e-13 68.2
MS.gene66448.t1 MTR_5g048860 35.915 142 75 4 215 340 288 429 1.17e-12 69.3
MS.gene66448.t1 MTR_8g065740 34.247 146 81 4 201 340 233 369 1.61e-12 68.9
MS.gene66448.t1 MTR_8g012290 52.308 65 30 1 277 340 291 355 1.63e-12 68.9
MS.gene66448.t1 MTR_8g012290 52.308 65 30 1 277 340 291 355 1.69e-12 68.9
MS.gene66448.t1 MTR_1g084980 45.455 66 36 0 275 340 460 525 1.87e-12 68.9
MS.gene66448.t1 MTR_7g053410 53.125 64 29 1 278 340 318 381 2.04e-12 68.6
MS.gene66448.t1 MTR_7g053410 52.308 65 30 1 277 340 317 381 2.11e-12 68.6
MS.gene66448.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.22e-12 68.2
MS.gene66448.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.30e-12 68.2
MS.gene66448.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.58e-12 68.2
MS.gene66448.t1 MTR_8g062240 49.231 65 32 1 277 340 151 215 2.60e-12 67.0
MS.gene66448.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.72e-12 68.2
MS.gene66448.t1 MTR_1g052470 54.545 66 29 1 276 340 297 362 3.83e-12 67.4
MS.gene66448.t1 MTR_1g069155 39.506 81 47 1 275 355 315 393 4.32e-12 67.8
MS.gene66448.t1 MTR_3g449770 36.364 99 50 3 279 369 311 404 4.41e-12 67.8
MS.gene66448.t1 MTR_3g498825 52.308 65 30 1 277 340 147 211 8.13e-12 66.2
MS.gene66448.t1 MTR_4g065870 53.030 66 30 1 276 340 354 419 8.89e-12 66.6
MS.gene66448.t1 MTR_8g099880 49.231 65 32 1 277 340 145 209 1.88e-11 65.1
MS.gene66448.t1 MTR_7g092540 55.556 63 27 1 278 339 244 306 2.39e-11 64.3
MS.gene66448.t1 MTR_1g116790 50.000 68 33 1 276 342 264 331 2.99e-11 64.3
MS.gene66448.t1 MTR_5g017040 42.188 64 37 0 290 353 118 181 3.54e-11 64.3
MS.gene66448.t1 MTR_7g092510 42.308 78 44 1 264 340 160 237 8.09e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66448.t1 AT2G14760 86.316 95 13 0 271 365 231 325 6.74e-54 181
MS.gene66448.t1 AT1G27740 63.514 148 45 3 220 367 119 257 8.23e-54 178
MS.gene66448.t1 AT4G33880 79.612 103 21 0 258 360 247 349 3.92e-53 179
MS.gene66448.t1 AT2G14760 75.926 108 13 1 271 365 231 338 3.54e-50 171
MS.gene66448.t1 AT5G43175 56.463 147 63 1 221 367 77 222 1.37e-46 159
MS.gene66448.t1 AT1G66470 54.255 94 38 2 253 345 174 263 5.50e-25 103
MS.gene66448.t1 AT5G37800 56.667 90 34 2 257 345 184 269 7.77e-25 103
MS.gene66448.t1 AT2G24260 56.410 78 31 1 266 340 21 98 9.39e-21 90.5
MS.gene66448.t1 AT4G30980 46.465 99 47 2 244 340 99 193 1.47e-20 91.3
MS.gene66448.t1 AT4G30980 46.465 99 47 2 244 340 147 241 2.12e-20 91.7
MS.gene66448.t1 AT2G24260 56.410 78 31 1 266 340 124 201 2.68e-20 91.3
MS.gene66448.t1 AT3G21330 62.500 56 21 0 284 339 276 331 6.41e-18 84.7
MS.gene66448.t1 AT5G58010 56.923 65 28 0 276 340 98 162 1.32e-17 82.8
MS.gene66448.t1 AT5G01305 51.515 66 29 1 274 336 31 96 9.12e-17 77.8
MS.gene66448.t1 AT4G00120 46.970 66 34 1 286 351 121 185 9.46e-16 75.5
MS.gene66448.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.33e-15 75.5
MS.gene66448.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.33e-15 75.5
MS.gene66448.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.36e-15 75.1
MS.gene66448.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.36e-15 75.1
MS.gene66448.t1 AT1G18400 53.846 65 29 1 277 340 145 209 6.67e-14 71.2
MS.gene66448.t1 AT1G18400 54.688 64 28 1 278 340 146 209 1.18e-13 70.9
MS.gene66448.t1 AT2G18300 31.875 160 92 4 185 340 103 249 1.73e-13 71.2
MS.gene66448.t1 AT2G18300 31.875 160 92 4 185 340 103 249 1.98e-13 70.9
MS.gene66448.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.14e-13 71.2
MS.gene66448.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.14e-13 71.2
MS.gene66448.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.14e-13 71.2
MS.gene66448.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.14e-13 71.2
MS.gene66448.t1 AT1G26260 36.424 151 86 4 195 340 120 265 2.15e-13 71.2
MS.gene66448.t1 AT1G26260 36.364 132 74 3 212 340 112 236 2.16e-13 70.9
MS.gene66448.t1 AT1G35460 54.545 66 29 1 276 340 180 245 2.31e-13 69.7
MS.gene66448.t1 AT2G18300 31.875 160 92 4 185 340 103 249 2.73e-13 70.9
MS.gene66448.t1 AT3G07340 34.337 166 83 5 189 340 169 322 4.16e-13 70.5
MS.gene66448.t1 AT1G25330 46.341 82 43 1 277 357 104 185 4.16e-13 68.6
MS.gene66448.t1 AT4G09180 52.941 68 31 1 276 342 183 250 4.36e-13 68.9
MS.gene66448.t1 AT1G73830 40.187 107 60 2 247 352 117 220 4.68e-13 68.9
MS.gene66448.t1 AT3G07340 34.337 166 83 5 189 340 169 322 4.69e-13 70.5
MS.gene66448.t1 AT1G73830 40.187 107 60 2 247 352 117 220 4.73e-13 68.9
MS.gene66448.t1 AT2G42280 55.385 65 28 1 276 339 278 342 2.19e-12 68.2
MS.gene66448.t1 AT1G59640 49.231 65 32 1 277 340 136 200 2.58e-12 67.0
MS.gene66448.t1 AT3G23690 37.168 113 54 2 245 340 143 255 2.68e-12 67.8
MS.gene66448.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.93e-12 68.2
MS.gene66448.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.93e-12 68.2
MS.gene66448.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.93e-12 68.2
MS.gene66448.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.93e-12 68.2
MS.gene66448.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.93e-12 68.2
MS.gene66448.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.93e-12 68.2
MS.gene66448.t1 AT1G51140 52.308 65 30 1 276 339 303 367 3.75e-12 67.4
MS.gene66448.t1 AT5G48560 52.308 65 30 1 277 340 301 365 3.95e-12 67.8
MS.gene66448.t1 AT5G48560 53.125 64 29 1 278 340 302 365 4.31e-12 67.8
MS.gene66448.t1 AT1G10120 51.562 64 30 1 278 340 207 270 5.30e-12 67.0
MS.gene66448.t1 AT1G10120 51.562 64 30 1 278 340 207 270 5.30e-12 67.0
MS.gene66448.t1 AT4G34530 50.769 65 31 1 277 340 172 236 5.35e-12 66.6
MS.gene66448.t1 AT1G59640 49.231 65 32 1 277 340 136 200 7.11e-12 66.2
MS.gene66448.t1 AT4G00050 41.463 82 43 2 263 344 96 172 1.10e-11 65.5
MS.gene66448.t1 AT2G42280 54.688 64 28 1 276 338 278 341 1.39e-11 65.5
MS.gene66448.t1 AT1G68920 50.769 65 31 1 277 340 302 366 1.60e-11 65.9
MS.gene66448.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.60e-11 65.9
MS.gene66448.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.60e-11 65.9
MS.gene66448.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.60e-11 65.9
MS.gene66448.t1 AT4G00050 41.463 82 43 2 263 344 198 274 2.14e-11 65.1
MS.gene66448.t1 AT4G00050 41.463 82 43 2 263 344 198 274 2.19e-11 65.1
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.54e-11 64.7
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.54e-11 64.7
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.54e-11 64.7
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.54e-11 64.7
MS.gene66448.t1 AT4G36540 47.692 65 33 1 277 340 141 205 3.61e-11 63.9
MS.gene66448.t1 AT4G36540 47.692 65 33 1 277 340 141 205 3.63e-11 63.9
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.02e-11 64.3
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.02e-11 64.3
MS.gene66448.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.02e-11 64.3
MS.gene66448.t1 AT4G28790 39.560 91 52 2 264 354 260 347 4.05e-11 64.3
MS.gene66448.t1 AT2G46970 32.967 91 56 1 276 361 222 312 5.55e-11 63.9
MS.gene66448.t1 AT2G46970 32.967 91 56 1 276 361 191 281 5.63e-11 63.9
MS.gene66448.t1 AT2G46970 32.967 91 56 1 276 361 200 290 6.41e-11 63.9
MS.gene66448.t1 AT4G36930 39.189 74 45 0 284 357 198 271 6.76e-11 63.5

Find 51 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATTACAATCTCATTA+AGG 0.173245 1.4:-4831031 None:intergenic
TGCTAGTGATGATCATATTT+TGG 0.194383 1.4:+4831079 MS.gene66448:CDS
GATCAAAATTCACTTCTTCT+AGG 0.206106 1.4:+4830729 MS.gene66448:CDS
GAGAAATATAGTTAGAGTTT+TGG 0.293615 1.4:-4830851 None:intergenic
TACCCTTGCATATAGACTTT+GGG 0.321694 1.4:-4831631 None:intergenic
AAGAAATCCCATTCTCCTTC+AGG 0.327986 1.4:-4830654 None:intergenic
TTCCATTACAATCTCATTAA+GGG 0.348435 1.4:-4831030 None:intergenic
TATGCACCACTTGCTTATAA+TGG 0.352026 1.4:+4832180 MS.gene66448:CDS
TGGTTATAATACTCAAATAA+TGG 0.360333 1.4:+4831109 MS.gene66448:CDS
TATATTACCTTTGTTCCGTT+TGG 0.381341 1.4:-4831826 None:intergenic
ATCAAAATTCACTTCTTCTA+GGG 0.385839 1.4:+4830730 MS.gene66448:CDS
ATTAATAATAGAGGATCAAA+TGG 0.401696 1.4:+4831492 MS.gene66448:CDS
CCTTCAGGGAAAGTACCTAT+AGG 0.408509 1.4:-4830639 None:intergenic
GGAACTACTCTCAACTCAAA+TGG 0.413988 1.4:+4831573 MS.gene66448:CDS
TTACCCTTGCATATAGACTT+TGG 0.415798 1.4:-4831632 None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG 0.424302 1.4:+4830647 MS.gene66448:CDS
TGCTTGGTGTGAAGATCAAC+AGG 0.425932 1.4:-4831134 None:intergenic
TTATTTACTAGTACTTGATC+AGG 0.442578 1.4:-4830942 None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG 0.443724 1.4:+4831159 MS.gene66448:CDS
CTGCATTTGCAACTCATGCT+TGG 0.451532 1.4:-4831150 None:intergenic
ATCCCTTAATGAGATTGTAA+TGG 0.463322 1.4:+4831028 MS.gene66448:CDS
GCTTATAATGGACTCGACCT+TGG 0.474494 1.4:+4832192 MS.gene66448:CDS
ACAGAAGAGATTAATAATAG+AGG 0.477922 1.4:+4831483 MS.gene66448:CDS
GAACTACTCTCAACTCAAAT+GGG 0.480885 1.4:+4831574 MS.gene66448:CDS
AATGCTTCTCAAGAAAATAG+TGG 0.493032 1.4:+4831549 MS.gene66448:CDS
GTACTTTCCCTGAAGGAGAA+TGG 0.496433 1.4:+4830646 MS.gene66448:CDS
TTACAAAATCTTGTACCAAA+CGG 0.523617 1.4:+4831811 MS.gene66448:CDS
TTATAGAATATGGAACCTAT+AGG 0.524720 1.4:+4830624 None:intergenic
ACCCTTGCATATAGACTTTG+GGG 0.534775 1.4:-4831630 None:intergenic
ATCCCCAAAGTCTATATGCA+AGG 0.542852 1.4:+4831628 MS.gene66448:CDS
AGAAATCCCATTCTCCTTCA+GGG 0.544452 1.4:-4830653 None:intergenic
ATTTCAATTATATAGGGCCA+AGG 0.547971 1.4:+4831399 MS.gene66448:intron
TCAAAATTCACTTCTTCTAG+GGG 0.551527 1.4:+4830731 MS.gene66448:CDS
TGAGGTTGAGATTGAGTCCA+AGG 0.565829 1.4:-4832209 None:intergenic
GAAAGTTGCTAACAATGAAG+AGG 0.569015 1.4:+4831455 MS.gene66448:CDS
ATTACAATCTCATTAAGGGA+TGG 0.572980 1.4:-4831026 None:intergenic
TATTAGTACAATGCTTGAAG+AGG 0.575403 1.4:+4831962 MS.gene66448:CDS
GAAACTTGATGTGATAGAAG+TGG 0.575721 1.4:+4831181 MS.gene66448:CDS
TCCCCAAAGTCTATATGCAA+GGG 0.597305 1.4:+4831629 MS.gene66448:CDS
GAAAATGATGCATTGAACAA+TGG 0.599441 1.4:+4830753 MS.gene66448:CDS
TCTTGTACCAAACGGAACAA+AGG 0.614171 1.4:+4831819 MS.gene66448:CDS
CCTATAGGTACTTTCCCTGA+AGG 0.620831 1.4:+4830639 MS.gene66448:CDS
AATTTCAGCAGTGCAAAATG+TGG 0.624595 1.4:-4830784 None:intergenic
TATATCTTAGAAGCTCATAG+TGG 0.625160 1.4:-4832243 None:intergenic
CTCTAGTAGTAACATTTCTG+AGG 0.625639 1.4:+4831521 MS.gene66448:CDS
AAGGATGCATGAAAATTGCA+AGG 0.634976 1.4:+4831418 MS.gene66448:CDS
ACTTGATGTGATAGAAGTGG+AGG 0.635683 1.4:+4831184 MS.gene66448:CDS
GGGAAGACAAGAGCTAGTAG+AGG 0.635890 1.4:+4831594 MS.gene66448:CDS
TCGAGTCCATTATAAGCAAG+TGG 0.638289 1.4:-4832186 None:intergenic
GCTTCTCAAGAAAATAGTGG+AGG 0.669375 1.4:+4831552 MS.gene66448:CDS
ATAGTGGTAGAGAACTGTTG+AGG 0.720764 1.4:-4832227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTAATATTGAAAT+TGG + chr1.4:4831859-4831878 MS.gene66448:intron 10.0%
!!! TATGATACTTTCTTTTTATT+TGG + chr1.4:4831743-4831762 MS.gene66448:intron 15.0%
!!! TTCGTTATTTCAATTATATA+GGG + chr1.4:4831393-4831412 MS.gene66448:intron 15.0%
!! ATTAATAATAGAGGATCAAA+TGG + chr1.4:4831492-4831511 MS.gene66448:CDS 20.0%
!! TGGTTATAATACTCAAATAA+TGG + chr1.4:4831109-4831128 MS.gene66448:CDS 20.0%
!!! CTTCGTTATTTCAATTATAT+AGG + chr1.4:4831392-4831411 MS.gene66448:intron 20.0%
!!! TGTTTTAATATTGAAATTGG+TGG + chr1.4:4831862-4831881 MS.gene66448:intron 20.0%
!!! TTGTTAATTTTTTCTTCAAC+AGG - chr1.4:4831212-4831231 None:intergenic 20.0%
!!! TTTTCATGTGACAAATTAAT+TGG + chr1.4:4831887-4831906 MS.gene66448:intron 20.0%
! AAGAGAATTAATTTCATGGA+TGG + chr1.4:4831925-4831944 MS.gene66448:intron 25.0%
! ACAGAAGAGATTAATAATAG+AGG + chr1.4:4831483-4831502 MS.gene66448:CDS 25.0%
! ATAAAATTGATCACCATATC+CGG - chr1.4:4831355-4831374 None:intergenic 25.0%
! ATCAAAATTCACTTCTTCTA+GGG + chr1.4:4830730-4830749 MS.gene66448:CDS 25.0%
! TTACAAAATCTTGTACCAAA+CGG + chr1.4:4831811-4831830 MS.gene66448:CDS 25.0%
! TTATTTACTAGTACTTGATC+AGG - chr1.4:4830945-4830964 None:intergenic 25.0%
! TTCCATTACAATCTCATTAA+GGG - chr1.4:4831033-4831052 None:intergenic 25.0%
!! ATTTTTACAGACTCAAATCA+AGG + chr1.4:4832001-4832020 MS.gene66448:CDS 25.0%
!! GAGAAATATAGTTAGAGTTT+TGG - chr1.4:4830854-4830873 None:intergenic 25.0%
!! TATATCCAATGATTTTTGCA+TGG + chr1.4:4830977-4830996 MS.gene66448:CDS 25.0%
!!! GATCATATTTTGGAGAAAAA+TGG + chr1.4:4831089-4831108 MS.gene66448:CDS 25.0%
AATGCTTCTCAAGAAAATAG+TGG + chr1.4:4831549-4831568 MS.gene66448:CDS 30.0%
ATCCCTTAATGAGATTGTAA+TGG + chr1.4:4831028-4831047 MS.gene66448:CDS 30.0%
ATTACAATCTCATTAAGGGA+TGG - chr1.4:4831029-4831048 None:intergenic 30.0%
ATTTCAATTATATAGGGCCA+AGG + chr1.4:4831399-4831418 MS.gene66448:intron 30.0%
CTTCCATTACAATCTCATTA+AGG - chr1.4:4831034-4831053 None:intergenic 30.0%
GAAAATGATGCATTGAACAA+TGG + chr1.4:4830753-4830772 MS.gene66448:CDS 30.0%
GATCAAAATTCACTTCTTCT+AGG + chr1.4:4830729-4830748 MS.gene66448:CDS 30.0%
GTGCAAGAGAATTAATTTCA+TGG + chr1.4:4831921-4831940 MS.gene66448:intron 30.0%
TATATTACCTTTGTTCCGTT+TGG - chr1.4:4831829-4831848 None:intergenic 30.0%
TATTAGTACAATGCTTGAAG+AGG + chr1.4:4831962-4831981 MS.gene66448:CDS 30.0%
TCAAAATTCACTTCTTCTAG+GGG + chr1.4:4830731-4830750 MS.gene66448:CDS 30.0%
! ATTTTGTTGCTGGTAAGATT+AGG - chr1.4:4831295-4831314 None:intergenic 30.0%
! TGCTAGTGATGATCATATTT+TGG + chr1.4:4831079-4831098 MS.gene66448:CDS 30.0%
! TTTCACGTTAATTTTGTTGC+TGG - chr1.4:4831305-4831324 None:intergenic 30.0%
AAGGATGCATGAAAATTGCA+AGG + chr1.4:4831418-4831437 MS.gene66448:CDS 35.0%
AATTTCAGCAGTGCAAAATG+TGG - chr1.4:4830787-4830806 None:intergenic 35.0%
ATTTCATGGATGGTTTATGC+AGG + chr1.4:4831935-4831954 MS.gene66448:intron 35.0%
CAAATCAAGGTATGCACAAT+AGG + chr1.4:4832014-4832033 MS.gene66448:intron 35.0%
CGGAACAAAGGTAATATAGT+TGG + chr1.4:4831831-4831850 MS.gene66448:intron 35.0%
CTCATCCATGCAAAAATCAT+TGG - chr1.4:4830985-4831004 None:intergenic 35.0%
CTCTAGTAGTAACATTTCTG+AGG + chr1.4:4831521-4831540 MS.gene66448:CDS 35.0%
GAAACTTGATGTGATAGAAG+TGG + chr1.4:4831181-4831200 MS.gene66448:CDS 35.0%
GAAAGTTGCTAACAATGAAG+AGG + chr1.4:4831455-4831474 MS.gene66448:CDS 35.0%
GAACTACTCTCAACTCAAAT+GGG + chr1.4:4831574-4831593 MS.gene66448:CDS 35.0%
GCATCTCTAACACTAAAAAG+CGG - chr1.4:4831333-4831352 None:intergenic 35.0%
TACCCTTGCATATAGACTTT+GGG - chr1.4:4831634-4831653 None:intergenic 35.0%
TATGCACCACTTGCTTATAA+TGG + chr1.4:4832180-4832199 MS.gene66448:CDS 35.0%
TTACCCTTGCATATAGACTT+TGG - chr1.4:4831635-4831654 None:intergenic 35.0%
! ACATTTTGCACTGCTGAAAT+TGG + chr1.4:4830786-4830805 MS.gene66448:CDS 35.0%
! TTGCAATTTTCATGCATCCT+TGG - chr1.4:4831419-4831438 None:intergenic 35.0%
!! CTTTTTAGTGTTAGAGATGC+CGG + chr1.4:4831333-4831352 MS.gene66448:intron 35.0%
!! TTTTGAGCTCTGATGATATG+TGG + chr1.4:4832154-4832173 MS.gene66448:CDS 35.0%
!!! CTTACATCTTTTGAAATGCG+AGG - chr1.4:4831260-4831279 None:intergenic 35.0%
!!! GAAATGCGAGGTTTTTTCTT+CGG - chr1.4:4831248-4831267 None:intergenic 35.0%
AAGAAATCCCATTCTCCTTC+AGG - chr1.4:4830657-4830676 None:intergenic 40.0%
ACCCTTGCATATAGACTTTG+GGG - chr1.4:4831633-4831652 None:intergenic 40.0%
ACTTGATGTGATAGAAGTGG+AGG + chr1.4:4831184-4831203 MS.gene66448:CDS 40.0%
AGAAATCCCATTCTCCTTCA+GGG - chr1.4:4830656-4830675 None:intergenic 40.0%
AGTTGCAAATGCAGCTCAAA+AGG + chr1.4:4831159-4831178 MS.gene66448:CDS 40.0%
ATAGTGGTAGAGAACTGTTG+AGG - chr1.4:4832230-4832249 None:intergenic 40.0%
ATCCCCAAAGTCTATATGCA+AGG + chr1.4:4831628-4831647 MS.gene66448:CDS 40.0%
CTCTAACACTAAAAAGCGGA+CGG - chr1.4:4831329-4831348 None:intergenic 40.0%
GCTTCTCAAGAAAATAGTGG+AGG + chr1.4:4831552-4831571 MS.gene66448:CDS 40.0%
GGAACTACTCTCAACTCAAA+TGG + chr1.4:4831573-4831592 MS.gene66448:CDS 40.0%
TACTTTCCCTGAAGGAGAAT+GGG + chr1.4:4830647-4830666 MS.gene66448:CDS 40.0%
TCCCCAAAGTCTATATGCAA+GGG + chr1.4:4831629-4831648 MS.gene66448:CDS 40.0%
TCGAGTCCATTATAAGCAAG+TGG - chr1.4:4832189-4832208 None:intergenic 40.0%
TCTTGTACCAAACGGAACAA+AGG + chr1.4:4831819-4831838 MS.gene66448:CDS 40.0%
AGTGTTAGAGATGCCGGATA+TGG + chr1.4:4831339-4831358 MS.gene66448:intron 45.0%
CCTATAGGTACTTTCCCTGA+AGG + chr1.4:4830639-4830658 MS.gene66448:CDS 45.0%
CTGCATTTGCAACTCATGCT+TGG - chr1.4:4831153-4831172 None:intergenic 45.0%
GTACTTTCCCTGAAGGAGAA+TGG + chr1.4:4830646-4830665 MS.gene66448:CDS 45.0%
TGAGGTTGAGATTGAGTCCA+AGG - chr1.4:4832212-4832231 None:intergenic 45.0%
!! CCTTCAGGGAAAGTACCTAT+AGG - chr1.4:4830642-4830661 None:intergenic 45.0%
!! GCTTATAATGGACTCGACCT+TGG + chr1.4:4832192-4832211 MS.gene66448:CDS 45.0%
!! TGCTTGGTGTGAAGATCAAC+AGG - chr1.4:4831137-4831156 None:intergenic 45.0%
!! TAATCTTATATTAAAAAAAA+AGG - chr1.4:4832072-4832091 None:intergenic 5.0%
GGGAAGACAAGAGCTAGTAG+AGG + chr1.4:4831594-4831613 MS.gene66448:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 4830633 4832251 4830633 ID=MS.gene66448
chr1.4 mRNA 4830633 4832251 4830633 ID=MS.gene66448.t1;Parent=MS.gene66448
chr1.4 exon 4830633 4831274 4830633 ID=MS.gene66448.t1.exon1;Parent=MS.gene66448.t1
chr1.4 CDS 4830633 4831274 4830633 ID=cds.MS.gene66448.t1;Parent=MS.gene66448.t1
chr1.4 exon 4831414 4831650 4831414 ID=MS.gene66448.t1.exon2;Parent=MS.gene66448.t1
chr1.4 CDS 4831414 4831650 4831414 ID=cds.MS.gene66448.t1;Parent=MS.gene66448.t1
chr1.4 exon 4831775 4831840 4831775 ID=MS.gene66448.t1.exon3;Parent=MS.gene66448.t1
chr1.4 CDS 4831775 4831840 4831775 ID=cds.MS.gene66448.t1;Parent=MS.gene66448.t1
chr1.4 exon 4831957 4832022 4831957 ID=MS.gene66448.t1.exon4;Parent=MS.gene66448.t1
chr1.4 CDS 4831957 4832022 4831957 ID=cds.MS.gene66448.t1;Parent=MS.gene66448.t1
chr1.4 exon 4832153 4832251 4832153 ID=MS.gene66448.t1.exon5;Parent=MS.gene66448.t1
chr1.4 CDS 4832153 4832251 4832153 ID=cds.MS.gene66448.t1;Parent=MS.gene66448.t1
Gene Sequence

>MS.gene66448

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTATTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGCATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCTAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTGATCTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGTAAGTTTTATTTTGTACCTAATCTTACCAGCAACAAAATTAACGTGAAATCCGTCCGCTTTTTAGTGTTAGAGATGCCGGATATGGTGATCAATTTTATTTTTTGTCTCTAATTTTCTTCGTTATTTCAATTATATAGGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTACAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGTAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGGTAACTAATCAATTACTTCAACTCAAACAAAAAAACTAGCTTGATTTATTTATATATTTTCATATCAAAACAAAAATTAGTTTATGCATATTTATGATACTTTCTTTTTATTTGGATTTTGCAGAAAAGAAGAGAAAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCAAACGGAACAAAGGTAATATAGTTGGTCTATTTTTGTTTTAATATTGAAATTGGTGGCATTTTCATGTGACAAATTAATTGGAGTAATTAATTGTGCAAGAGAATTAATTTCATGGATGGTTTATGCAGGTTGATATTAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGGTATGCACAATAGGAGACATTATATATCGATGCATAAAATTTAAATCCTTTTTTTTTAATATAAGATTATATTCATAAAAGACAAGTACTAATCAAATAATCATTGTTTTATTGTCTTTTTTTAATGTAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTCGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA
Protein sequence

>MS.gene66448.t1

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDALNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVDLHTKHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEITEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL