Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66489.t1 | GAU41549.1 | 37.6 | 85 | 50 | 1 | 95 | 179 | 310 | 391 | 5.70E-06 | 61.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66489.t1 | A0A392LZ92 | 34.1 | 85 | 52 | 2 | 97 | 181 | 91 | 171 | 1.8e-06 | 62.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66489.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTGACTTTGTTCGTAAA+TGG | 0.194038 | 1.4:-5309678 | MS.gene66489:CDS |
| CTTTGTTCGTAAATGGTATA+TGG | 0.238429 | 1.4:-5309671 | MS.gene66489:CDS |
| TAATCCAGTAGTATACATTT+TGG | 0.250992 | 1.4:+5309591 | None:intergenic |
| ATCACAGTTTCGAAGAATTT+AGG | 0.258276 | 1.4:+5309828 | None:intergenic |
| AAGGCTGGTATGAATTTGTT+AGG | 0.290399 | 1.4:-5307320 | MS.gene66489:CDS |
| GATGGCAATCTCACAAGTTT+TGG | 0.322191 | 1.4:+5307458 | None:intergenic |
| ATTGTTCGCCGTTCTGCTCT+TGG | 0.322716 | 1.4:-5307225 | MS.gene66489:CDS |
| CCTTTCAGCGATGAGGAGTT+TGG | 0.326336 | 1.4:+5310186 | None:intergenic |
| GATGAGGAGTTTGGCTTTGA+TGG | 0.356109 | 1.4:+5310195 | None:intergenic |
| TTAAATCAGTACATGGAATC+TGG | 0.356959 | 1.4:-5309571 | MS.gene66489:CDS |
| CCAAGTACAGATTTCCGTTT+GGG | 0.357381 | 1.4:+5309614 | None:intergenic |
| GTACATGGAATCTGGGATTC+AGG | 0.367539 | 1.4:-5309563 | MS.gene66489:intron |
| CAAAATATCGTACCTCTTTG+AGG | 0.387393 | 1.4:+5310152 | None:intergenic |
| GTCTAAAATTAACCTTTACT+TGG | 0.409383 | 1.4:-5307424 | MS.gene66489:CDS |
| AACCTTTACTTGGTGGGTAG+TGG | 0.423355 | 1.4:-5307414 | MS.gene66489:CDS |
| ATCAACACATATACCAGATC+TGG | 0.450296 | 1.4:+5309801 | None:intergenic |
| CCCAAACGGAAATCTGTACT+TGG | 0.452306 | 1.4:-5309614 | MS.gene66489:CDS |
| GCCAAGTACAGATTTCCGTT+TGG | 0.455129 | 1.4:+5309613 | None:intergenic |
| AACTGTGATTCATCCAGATC+TGG | 0.470305 | 1.4:-5309814 | MS.gene66489:intron |
| TAAAATTAACCTTTACTTGG+TGG | 0.480947 | 1.4:-5307421 | MS.gene66489:CDS |
| TTGGCCAAAATGTATACTAC+TGG | 0.482457 | 1.4:-5309595 | MS.gene66489:CDS |
| AGGCTGGTATGAATTTGTTA+GGG | 0.513416 | 1.4:-5307319 | MS.gene66489:CDS |
| CTCACAAACAGCTTATCAGT+TGG | 0.522596 | 1.4:+5307249 | None:intergenic |
| TAAATCAGTACATGGAATCT+GGG | 0.526053 | 1.4:-5309570 | MS.gene66489:CDS |
| AAAATTAACCTTTACTTGGT+GGG | 0.526436 | 1.4:-5307420 | MS.gene66489:CDS |
| CATTTACGAACAAAGTCAAT+CGG | 0.528619 | 1.4:+5309679 | None:intergenic |
| GAGCTTAGAGCTAGTAACCT+TGG | 0.530044 | 1.4:-5309649 | MS.gene66489:CDS |
| AAAGGTATCTTACAGAAGGC+TGG | 0.532878 | 1.4:-5307335 | MS.gene66489:CDS |
| TTAGAGCTAGTAACCTTGGA+TGG | 0.533014 | 1.4:-5309645 | MS.gene66489:CDS |
| CTCCACTACCCACCAAGTAA+AGG | 0.550190 | 1.4:+5307412 | None:intergenic |
| GGATGGATTAAGCTCCCAAA+CGG | 0.561998 | 1.4:-5309628 | MS.gene66489:CDS |
| AATGAAAGGTATCTTACAGA+AGG | 0.566126 | 1.4:-5307339 | MS.gene66489:CDS |
| CCAAACTCCTCATCGCTGAA+AGG | 0.570191 | 1.4:-5310186 | MS.gene66489:CDS |
| ATATCGTACCTCTTTGAGGA+AGG | 0.570920 | 1.4:+5310156 | None:intergenic |
| TTCAATTCCTTTCAGCGATG+AGG | 0.573510 | 1.4:+5310179 | None:intergenic |
| GAGTTTGGCTTTGATGGACG+AGG | 0.574140 | 1.4:+5310201 | None:intergenic |
| TTGGGAGCTTAATCCATCCA+AGG | 0.576601 | 1.4:+5309632 | None:intergenic |
| TACTGGATTAAATCAGTACA+TGG | 0.576769 | 1.4:-5309578 | MS.gene66489:CDS |
| TATTGATGTAGGGTTTGCAA+AGG | 0.577704 | 1.4:-5309876 | MS.gene66489:intron |
| GGAGAAAGTTCTTCCAACAA+TGG | 0.583481 | 1.4:-5309855 | MS.gene66489:CDS |
| GAATATATTCTCAAAATGAA+AGG | 0.587129 | 1.4:-5307353 | MS.gene66489:CDS |
| TTGTTAGGGATAACAAGCTG+AGG | 0.605523 | 1.4:-5307305 | MS.gene66489:CDS |
| AGGGATAACAAGCTGAGGGT+GGG | 0.610095 | 1.4:-5307300 | MS.gene66489:CDS |
| TAGGGATAACAAGCTGAGGG+TGG | 0.620885 | 1.4:-5307301 | MS.gene66489:CDS |
| TGTTAGGGATAACAAGCTGA+GGG | 0.634705 | 1.4:-5307304 | MS.gene66489:CDS |
| TTTAGACTGTGTGACTGGGA+TGG | 0.645506 | 1.4:+5307440 | None:intergenic |
| ATCTTCATCCAAGAGCAGAA+CGG | 0.662274 | 1.4:+5307217 | None:intergenic |
| GAATTGAACCTTCCTCAAAG+AGG | 0.691465 | 1.4:-5310164 | MS.gene66489:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTTCAAAATTTAAAT+TGG | - | chr1.4:5309143-5309162 | MS.gene66489:intron | 10.0% |
| !!! | TGAATATCTATTTTTTAAAA+TGG | - | chr1.4:5308964-5308983 | MS.gene66489:intron | 10.0% |
| !!! | TTTAATCCAATTTTTTATTT+AGG | - | chr1.4:5309527-5309546 | MS.gene66489:intron | 10.0% |
| !!! | TTTTATCCTAAATAAAAAAT+TGG | + | chr1.4:5309536-5309555 | None:intergenic | 10.0% |
| !! | TCATTAAATGTATAAATGAA+CGG | - | chr1.4:5307395-5307414 | MS.gene66489:CDS | 15.0% |
| !!! | ATAATAATAATCTTTGAAGA+GGG | - | chr1.4:5308726-5308745 | MS.gene66489:intron | 15.0% |
| !!! | CTTGAAAAATAAAAGTATAT+TGG | - | chr1.4:5309384-5309403 | MS.gene66489:intron | 15.0% |
| !!! | GATATATGTTTATTTCTTAT+AGG | - | chr1.4:5307709-5307728 | MS.gene66489:intron | 15.0% |
| !! | AAAAGAATGTTATTGATGTA+GGG | - | chr1.4:5307539-5307558 | MS.gene66489:intron | 20.0% |
| !! | AATTAACATACTAAAGTACA+AGG | + | chr1.4:5309814-5309833 | None:intergenic | 20.0% |
| !! | ATGAAAGATTGCAATAAAAA+AGG | + | chr1.4:5307365-5307384 | None:intergenic | 20.0% |
| !! | ATTCTTGATGAATTATTACT+CGG | - | chr1.4:5308561-5308580 | MS.gene66489:intron | 20.0% |
| !! | GAATATATTCTCAAAATGAA+AGG | - | chr1.4:5310072-5310091 | MS.gene66489:intron | 20.0% |
| !! | TAAAAGAATGTTATTGATGT+AGG | - | chr1.4:5307538-5307557 | MS.gene66489:intron | 20.0% |
| !! | TGAAAGATTGCAATAAAAAA+GGG | + | chr1.4:5307364-5307383 | None:intergenic | 20.0% |
| !!! | AAATAAAAGTATATTGGTGT+AGG | - | chr1.4:5309390-5309409 | MS.gene66489:intron | 20.0% |
| !!! | CATAATAATAATCTTTGAAG+AGG | - | chr1.4:5308725-5308744 | MS.gene66489:intron | 20.0% |
| !!! | TAATAATAATCTTTGAAGAG+GGG | - | chr1.4:5308727-5308746 | MS.gene66489:intron | 20.0% |
| !!! | TCTATTTTTTAAAATGGTGA+AGG | - | chr1.4:5308970-5308989 | MS.gene66489:intron | 20.0% |
| !!! | TGTACTTTTTTATTTACCAT+AGG | - | chr1.4:5309173-5309192 | MS.gene66489:intron | 20.0% |
| ! | AAAATAGGTCTCACATAAAA+TGG | + | chr1.4:5308833-5308852 | None:intergenic | 25.0% |
| ! | AAAATTAACCTTTACTTGGT+GGG | - | chr1.4:5310005-5310024 | MS.gene66489:intron | 25.0% |
| ! | AAAGTGTATGTGTGTATATA+TGG | + | chr1.4:5309926-5309945 | None:intergenic | 25.0% |
| ! | AACACTAAATGTGTTGAAAA+GGG | - | chr1.4:5307492-5307511 | MS.gene66489:intron | 25.0% |
| ! | AATTATTACTCGGTTTAACA+AGG | - | chr1.4:5308571-5308590 | MS.gene66489:intron | 25.0% |
| ! | ACTGTTACCATGTATATAAT+CGG | + | chr1.4:5307472-5307491 | None:intergenic | 25.0% |
| ! | ATTATGAGTTTATGACTAAG+TGG | + | chr1.4:5309705-5309724 | None:intergenic | 25.0% |
| ! | CAGCTTATTTGTTTGAATAA+AGG | - | chr1.4:5309046-5309065 | MS.gene66489:intron | 25.0% |
| ! | GAAGAAAAAAAACCTAGAAT+AGG | + | chr1.4:5307332-5307351 | None:intergenic | 25.0% |
| ! | TAAAATTAACCTTTACTTGG+TGG | - | chr1.4:5310004-5310023 | MS.gene66489:intron | 25.0% |
| ! | TAACACTAAATGTGTTGAAA+AGG | - | chr1.4:5307491-5307510 | MS.gene66489:intron | 25.0% |
| ! | TGCATTTGTGAAATAAATGT+GGG | + | chr1.4:5308868-5308887 | None:intergenic | 25.0% |
| ! | TTATTTACCATAGGCAAAAA+TGG | - | chr1.4:5309182-5309201 | MS.gene66489:intron | 25.0% |
| ! | TTGCATTTGTGAAATAAATG+TGG | + | chr1.4:5308869-5308888 | None:intergenic | 25.0% |
| !! | AACTTTAGTATCCTTGTTAT+TGG | + | chr1.4:5308664-5308683 | None:intergenic | 25.0% |
| !! | AGTGAAAAACACATTTTCTA+CGG | + | chr1.4:5308438-5308457 | None:intergenic | 25.0% |
| !! | GGAATTTTTCATTCTTACTT+AGG | + | chr1.4:5309092-5309111 | None:intergenic | 25.0% |
| !! | GTCTAAAATTAACCTTTACT+TGG | - | chr1.4:5310001-5310020 | MS.gene66489:intron | 25.0% |
| !! | TAATCCAGTAGTATACATTT+TGG | + | chr1.4:5307837-5307856 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATGAAACTAGA+AGG | + | chr1.4:5308546-5308565 | None:intergenic | 25.0% |
| !!! | ATTTTTTAAAATGGTGAAGG+TGG | - | chr1.4:5308973-5308992 | MS.gene66489:intron | 25.0% |
| AACATCCATCTTGAACTTAT+TGG | + | chr1.4:5307948-5307967 | None:intergenic | 30.0% | |
| ACCTCTGCAAAGTATATAAT+TGG | - | chr1.4:5308185-5308204 | MS.gene66489:intron | 30.0% | |
| ATCACAGTTTCGAAGAATTT+AGG | + | chr1.4:5307600-5307619 | None:intergenic | 30.0% | |
| ATGAAAGACCATTCATTGTA+GGG | - | chr1.4:5309119-5309138 | MS.gene66489:intron | 30.0% | |
| ATTAAACATCCCAAACTTTC+TGG | + | chr1.4:5309222-5309241 | None:intergenic | 30.0% | |
| CAAGGATACTAAAGTTGTAT+TGG | - | chr1.4:5308668-5308687 | MS.gene66489:intron | 30.0% | |
| CATATGGTTAAACAAAGATG+CGG | + | chr1.4:5308269-5308288 | None:intergenic | 30.0% | |
| CATTTACGAACAAAGTCAAT+CGG | + | chr1.4:5307749-5307768 | None:intergenic | 30.0% | |
| CTTTGTTCGTAAATGGTATA+TGG | - | chr1.4:5307754-5307773 | MS.gene66489:intron | 30.0% | |
| GAATGGTCTTTCATGTAAAA+TGG | + | chr1.4:5309113-5309132 | None:intergenic | 30.0% | |
| GTATTATAACACAGCAAAAC+TGG | + | chr1.4:5308302-5308321 | None:intergenic | 30.0% | |
| TAAATCAGTACATGGAATCT+GGG | - | chr1.4:5307855-5307874 | MS.gene66489:intron | 30.0% | |
| TAAGCTACATTATCTTGTAG+AGG | - | chr1.4:5307922-5307941 | MS.gene66489:intron | 30.0% | |
| TAATGTAGCTTAACTCTCAT+AGG | + | chr1.4:5307914-5307933 | None:intergenic | 30.0% | |
| TACTGGATTAAATCAGTACA+TGG | - | chr1.4:5307847-5307866 | MS.gene66489:intron | 30.0% | |
| TACTTACAAGAAGAATGCTT+TGG | + | chr1.4:5309285-5309304 | None:intergenic | 30.0% | |
| TATTCCCTATGGTAATATGA+TGG | + | chr1.4:5309842-5309861 | None:intergenic | 30.0% | |
| TCATCCATCATATTACCATA+GGG | - | chr1.4:5309835-5309854 | MS.gene66489:CDS | 30.0% | |
| TCCAATTATATACTTTGCAG+AGG | + | chr1.4:5308189-5308208 | None:intergenic | 30.0% | |
| TGCAAGTATATGTGAAGATT+GGG | + | chr1.4:5308705-5308724 | None:intergenic | 30.0% | |
| TTAAATCAGTACATGGAATC+TGG | - | chr1.4:5307854-5307873 | MS.gene66489:intron | 30.0% | |
| TTATATACTTTGCAGAGGTA+TGG | + | chr1.4:5308184-5308203 | None:intergenic | 30.0% | |
| TTCATCCATCATATTACCAT+AGG | - | chr1.4:5309834-5309853 | MS.gene66489:CDS | 30.0% | |
| ! | AAGTTCAAGATGGATGTTTT+AGG | - | chr1.4:5307950-5307969 | MS.gene66489:intron | 30.0% |
| ! | AGCTTTACCGATTATATACA+TGG | - | chr1.4:5307462-5307481 | MS.gene66489:CDS | 30.0% |
| ! | TAATTTTAGACTGTGTGACT+GGG | + | chr1.4:5309992-5310011 | None:intergenic | 30.0% |
| ! | TTAATTTTAGACTGTGTGAC+TGG | + | chr1.4:5309993-5310012 | None:intergenic | 30.0% |
| ! | TTTTCTACGGATGTTATCTT+TGG | + | chr1.4:5308425-5308444 | None:intergenic | 30.0% |
| !! | AATGAAAGGTATCTTACAGA+AGG | - | chr1.4:5310086-5310105 | MS.gene66489:intron | 30.0% |
| !! | ACAACAACGCTTTTAAGAAA+TGG | + | chr1.4:5308331-5308350 | None:intergenic | 30.0% |
| !! | GAATTTAGGTTTTCCATTGT+TGG | + | chr1.4:5307586-5307605 | None:intergenic | 30.0% |
| !! | GGGTCTTACATTTTGAAAAT+AGG | + | chr1.4:5308848-5308867 | None:intergenic | 30.0% |
| !! | GTAAGTACTATTGTTTCTGA+AGG | - | chr1.4:5309298-5309317 | MS.gene66489:intron | 30.0% |
| !!! | AGTTTTGGAGTGAAATCTAT+AGG | - | chr1.4:5308800-5308819 | MS.gene66489:intron | 30.0% |
| !!! | GTTTTGGAGTGAAATCTATA+GGG | - | chr1.4:5308801-5308820 | MS.gene66489:intron | 30.0% |
| !!! | TTTTGGAGTGAAATCTATAG+GGG | - | chr1.4:5308802-5308821 | MS.gene66489:intron | 30.0% |
| AATACGCAGTTAGAAGTTTC+GGG | + | chr1.4:5308487-5308506 | None:intergenic | 35.0% | |
| AATTCTTCCCCTACAATGAA+TGG | + | chr1.4:5309130-5309149 | None:intergenic | 35.0% | |
| ACTTCTAACTGCGTATTCAA+TGG | - | chr1.4:5308490-5308509 | MS.gene66489:intron | 35.0% | |
| ATCAACACATATACCAGATC+TGG | + | chr1.4:5307627-5307646 | None:intergenic | 35.0% | |
| CAAAATATCGTACCTCTTTG+AGG | + | chr1.4:5307276-5307295 | None:intergenic | 35.0% | |
| CAAACTATGACTTGACAATG+TGG | + | chr1.4:5309021-5309040 | None:intergenic | 35.0% | |
| CAAGCAATAAGCCAATAACA+AGG | - | chr1.4:5308650-5308669 | MS.gene66489:intron | 35.0% | |
| CATATACGGGTGTTAACTTA+AGG | - | chr1.4:5308515-5308534 | MS.gene66489:intron | 35.0% | |
| CATGAAAGACCATTCATTGT+AGG | - | chr1.4:5309118-5309137 | MS.gene66489:intron | 35.0% | |
| CGTATTCAATGGTGCATATA+CGG | - | chr1.4:5308501-5308520 | MS.gene66489:intron | 35.0% | |
| GAATACGCAGTTAGAAGTTT+CGG | + | chr1.4:5308488-5308507 | None:intergenic | 35.0% | |
| GATGAATCTCTTCCTATTCT+AGG | - | chr1.4:5307317-5307336 | MS.gene66489:CDS | 35.0% | |
| GTATTCAATGGTGCATATAC+GGG | - | chr1.4:5308502-5308521 | MS.gene66489:intron | 35.0% | |
| GTGCAAGTATATGTGAAGAT+TGG | + | chr1.4:5308706-5308725 | None:intergenic | 35.0% | |
| TATTGATGTAGGGTTTGCAA+AGG | - | chr1.4:5307549-5307568 | MS.gene66489:intron | 35.0% | |
| TCAATACCATCAACATCATC+AGG | + | chr1.4:5308079-5308098 | None:intergenic | 35.0% | |
| TCATCATCAGATATGACCAA+TGG | + | chr1.4:5308010-5308029 | None:intergenic | 35.0% | |
| TCTTACTTAGGCAATGAAAC+TGG | + | chr1.4:5309080-5309099 | None:intergenic | 35.0% | |
| TGAAAGACCATTCATTGTAG+GGG | - | chr1.4:5309120-5309139 | MS.gene66489:intron | 35.0% | |
| TGGTCACAAATCAAATCCAA+TGG | + | chr1.4:5309906-5309925 | None:intergenic | 35.0% | |
| TTGAGAATGAAACTCAAGCT+CGG | - | chr1.4:5308941-5308960 | MS.gene66489:intron | 35.0% | |
| TTGGCCAAAATGTATACTAC+TGG | - | chr1.4:5307830-5307849 | MS.gene66489:intron | 35.0% | |
| TTTATGACTACTAGCCCTTT+GGG | + | chr1.4:5309771-5309790 | None:intergenic | 35.0% | |
| ! | AAACTTTCTGGTGGAAAATG+GGG | + | chr1.4:5309210-5309229 | None:intergenic | 35.0% |
| ! | AAGGCTGGTATGAATTTGTT+AGG | - | chr1.4:5310105-5310124 | MS.gene66489:intron | 35.0% |
| ! | CAAACTTTCTGGTGGAAAAT+GGG | + | chr1.4:5309211-5309230 | None:intergenic | 35.0% |
| ! | CATTTTCCACCAGAAAGTTT+GGG | - | chr1.4:5309210-5309229 | MS.gene66489:intron | 35.0% |
| ! | CGATTGACTTTGTTCGTAAA+TGG | - | chr1.4:5307747-5307766 | MS.gene66489:intron | 35.0% |
| ! | GAAGTATTAGAAACACTCTC+AGG | + | chr1.4:5308901-5308920 | None:intergenic | 35.0% |
| ! | TTATTGCTTGTGACTTGCAT+TGG | + | chr1.4:5308640-5308659 | None:intergenic | 35.0% |
| !! | AGGCTGGTATGAATTTGTTA+GGG | - | chr1.4:5310106-5310125 | MS.gene66489:intron | 35.0% |
| !! | ATGGATGTTTTAGGTCTTGA+TGG | - | chr1.4:5307959-5307978 | MS.gene66489:intron | 35.0% |
| !! | CGCTTTTAAGAAATGGACAA+AGG | + | chr1.4:5308324-5308343 | None:intergenic | 35.0% |
| !! | TATTGTTTCTGAAGGACAGA+AGG | - | chr1.4:5309306-5309325 | MS.gene66489:intron | 35.0% |
| !! | TGATGATGTTGATGGTATTG+AGG | - | chr1.4:5308078-5308097 | MS.gene66489:intron | 35.0% |
| AAACATCCCAAACTTTCTGG+TGG | + | chr1.4:5309219-5309238 | None:intergenic | 40.0% | |
| AACTGGAACTGGTAAGCATA+TGG | + | chr1.4:5308285-5308304 | None:intergenic | 40.0% | |
| AACTGTGATTCATCCAGATC+TGG | - | chr1.4:5307611-5307630 | MS.gene66489:intron | 40.0% | |
| AGAGGCCAATAAGTTCAAGA+TGG | - | chr1.4:5307940-5307959 | MS.gene66489:intron | 40.0% | |
| ATACGCAGTTAGAAGTTTCG+GGG | + | chr1.4:5308486-5308505 | None:intergenic | 40.0% | |
| CAAGTCGATGAACAATCCAT+TGG | - | chr1.4:5307991-5308010 | MS.gene66489:intron | 40.0% | |
| CCAAGTACAGATTTCCGTTT+GGG | + | chr1.4:5307814-5307833 | None:intergenic | 40.0% | |
| CTCACAAACAGCTTATCAGT+TGG | + | chr1.4:5310179-5310198 | None:intergenic | 40.0% | |
| GAAGAAAAAACCACAAGCAC+TGG | - | chr1.4:5308237-5308256 | MS.gene66489:intron | 40.0% | |
| GAATTGAACCTTCCTCAAAG+AGG | - | chr1.4:5307261-5307280 | MS.gene66489:CDS | 40.0% | |
| GCCATCAGTATCATCATCAT+CGG | + | chr1.4:5308137-5308156 | None:intergenic | 40.0% | |
| GGAGAAAGTTCTTCCAACAA+TGG | - | chr1.4:5307570-5307589 | MS.gene66489:intron | 40.0% | |
| GTGTCTACTTTCAACCCAAA+GGG | - | chr1.4:5309754-5309773 | MS.gene66489:intron | 40.0% | |
| GTTTATGACTACTAGCCCTT+TGG | + | chr1.4:5309772-5309791 | None:intergenic | 40.0% | |
| TAACACAGCAAAACTGGAAC+TGG | + | chr1.4:5308296-5308315 | None:intergenic | 40.0% | |
| TACGGATGTTATCTTTGGTG+TGG | + | chr1.4:5308420-5308439 | None:intergenic | 40.0% | |
| TAGGAAGAGATTCATCAACG+AGG | + | chr1.4:5307313-5307332 | None:intergenic | 40.0% | |
| TGTGTCTACTTTCAACCCAA+AGG | - | chr1.4:5309753-5309772 | MS.gene66489:intron | 40.0% | |
| TGTTAGGGATAACAAGCTGA+GGG | - | chr1.4:5310121-5310140 | MS.gene66489:intron | 40.0% | |
| TTAGAGCTAGTAACCTTGGA+TGG | - | chr1.4:5307780-5307799 | MS.gene66489:intron | 40.0% | |
| TTCAATTCCTTTCAGCGATG+AGG | + | chr1.4:5307249-5307268 | None:intergenic | 40.0% | |
| TTGTTAGGGATAACAAGCTG+AGG | - | chr1.4:5310120-5310139 | MS.gene66489:intron | 40.0% | |
| TTGTTTCGAAAGCTCTTGCA+TGG | - | chr1.4:5308215-5308234 | MS.gene66489:intron | 40.0% | |
| ! | ACCGATGATGATGATACTGA+TGG | - | chr1.4:5308133-5308152 | MS.gene66489:intron | 40.0% |
| ! | ATATCGTACCTCTTTGAGGA+AGG | + | chr1.4:5307272-5307291 | None:intergenic | 40.0% |
| ! | ATGATGATACTGATGGCGAT+TGG | - | chr1.4:5308140-5308159 | MS.gene66489:intron | 40.0% |
| ! | CATTGGTAACTTGAGTGAGA+AGG | + | chr1.4:5308623-5308642 | None:intergenic | 40.0% |
| ! | CCAAACTTTCTGGTGGAAAA+TGG | + | chr1.4:5309212-5309231 | None:intergenic | 40.0% |
| ! | CCATTTTCCACCAGAAAGTT+TGG | - | chr1.4:5309209-5309228 | MS.gene66489:intron | 40.0% |
| ! | CGTTGACTGTATATGACCAT+TGG | - | chr1.4:5309887-5309906 | MS.gene66489:intron | 40.0% |
| ! | CTCTAACACTCGTTCAGTTT+TGG | - | chr1.4:5308785-5308804 | MS.gene66489:intron | 40.0% |
| ! | GATGATCCTGATGATGTTGA+TGG | - | chr1.4:5308070-5308089 | MS.gene66489:intron | 40.0% |
| ! | GATGGCAATCTCACAAGTTT+TGG | + | chr1.4:5309970-5309989 | None:intergenic | 40.0% |
| ! | TTAGGTCTTGATGGACAACT+TGG | - | chr1.4:5307968-5307987 | MS.gene66489:intron | 40.0% |
| !! | AAAGGTATCTTACAGAAGGC+TGG | - | chr1.4:5310090-5310109 | MS.gene66489:intron | 40.0% |
| ACGGGTGTTAACTTAAGGTG+TGG | - | chr1.4:5308520-5308539 | MS.gene66489:intron | 45.0% | |
| CCCAAACGGAAATCTGTACT+TGG | - | chr1.4:5307811-5307830 | MS.gene66489:intron | 45.0% | |
| GAGCTTAGAGCTAGTAACCT+TGG | - | chr1.4:5307776-5307795 | MS.gene66489:intron | 45.0% | |
| GCCAAGTACAGATTTCCGTT+TGG | + | chr1.4:5307815-5307834 | None:intergenic | 45.0% | |
| TATGACTAAGTGGCGTATCC+AGG | + | chr1.4:5309695-5309714 | None:intergenic | 45.0% | |
| TGCAGCACAAGTATTCCCTA+TGG | + | chr1.4:5309853-5309872 | None:intergenic | 45.0% | |
| TTGGGAGCTTAATCCATCCA+AGG | + | chr1.4:5307796-5307815 | None:intergenic | 45.0% | |
| TTTAGACTGTGTGACTGGGA+TGG | + | chr1.4:5309988-5310007 | None:intergenic | 45.0% | |
| ! | AACCTTTACTTGGTGGGTAG+TGG | - | chr1.4:5310011-5310030 | MS.gene66489:intron | 45.0% |
| ! | GTACATGGAATCTGGGATTC+AGG | - | chr1.4:5307862-5307881 | MS.gene66489:intron | 45.0% |
| ! | GTTTCGGGGTTTGATAGTTG+AGG | + | chr1.4:5308472-5308491 | None:intergenic | 45.0% |
| !! | GATGAGGAGTTTGGCTTTGA+TGG | + | chr1.4:5307233-5307252 | None:intergenic | 45.0% |
| !! | GCAATCTCACAAGTTTTGGC+TGG | + | chr1.4:5309966-5309985 | None:intergenic | 45.0% |
| !! | GGATGGATTAAGCTCCCAAA+CGG | - | chr1.4:5307797-5307816 | MS.gene66489:intron | 45.0% |
| !! | TGGGGATCCATTTTTGCCTA+TGG | + | chr1.4:5309192-5309211 | None:intergenic | 45.0% |
| !! | ATTTATGTTTATTTATAATA+TGG | - | chr1.4:5307655-5307674 | MS.gene66489:intron | 5.0% |
| !! | TTTATGTTTATTTATAATAT+GGG | - | chr1.4:5307656-5307675 | MS.gene66489:intron | 5.0% |
| !!! | ATTCTTTTAAAATATATAAA+TGG | + | chr1.4:5307527-5307546 | None:intergenic | 5.0% |
| AGGGATAACAAGCTGAGGGT+GGG | - | chr1.4:5310125-5310144 | MS.gene66489:intron | 50.0% | |
| ATTCAGGTGGCACTAAGGTG+TGG | - | chr1.4:5307878-5307897 | MS.gene66489:intron | 50.0% | |
| ATTGTTCGCCGTTCTGCTCT+TGG | - | chr1.4:5310200-5310219 | MS.gene66489:CDS | 50.0% | |
| CCAAACTCCTCATCGCTGAA+AGG | - | chr1.4:5307239-5307258 | MS.gene66489:CDS | 50.0% | |
| CCTTTCAGCGATGAGGAGTT+TGG | + | chr1.4:5307242-5307261 | None:intergenic | 50.0% | |
| CTCCACTACCCACCAAGTAA+AGG | + | chr1.4:5310016-5310035 | None:intergenic | 50.0% | |
| TAGGGATAACAAGCTGAGGG+TGG | - | chr1.4:5310124-5310143 | MS.gene66489:intron | 50.0% | |
| ! | CATGGAATCTGGGATTCAGG+TGG | - | chr1.4:5307865-5307884 | MS.gene66489:intron | 50.0% |
| ! | TCCAAATTTTTCGCACCCCC+TGG | - | chr1.4:5309661-5309680 | MS.gene66489:CDS | 50.0% |
| ! | TCCAGGGGGTGCGAAAAATT+TGG | + | chr1.4:5309665-5309684 | None:intergenic | 50.0% |
| !! | GAGTTTGGCTTTGATGGACG+AGG | + | chr1.4:5307227-5307246 | None:intergenic | 50.0% |
| AAGTGGCGTATCCAGGACCT+TGG | + | chr1.4:5309688-5309707 | None:intergenic | 55.0% | |
| CTGGGATTCAGGTGGCACTA+AGG | - | chr1.4:5307873-5307892 | MS.gene66489:intron | 55.0% | |
| GCGGAACATACCAGTGCTTG+TGG | + | chr1.4:5308250-5308269 | None:intergenic | 55.0% | |
| GTATCCAGGACCTTGGTCCA+GGG | + | chr1.4:5309681-5309700 | None:intergenic | 55.0% | |
| TATCCAGGACCTTGGTCCAG+GGG | + | chr1.4:5309680-5309699 | None:intergenic | 55.0% | |
| ATCCAGGACCTTGGTCCAGG+GGG | + | chr1.4:5309679-5309698 | None:intergenic | 60.0% | |
| CGTATCCAGGACCTTGGTCC+AGG | + | chr1.4:5309682-5309701 | None:intergenic | 60.0% | |
| ! | TTTTCGCACCCCCTGGACCA+AGG | - | chr1.4:5309668-5309687 | MS.gene66489:CDS | 60.0% |
| CACCCCCTGGACCAAGGTCC+TGG | - | chr1.4:5309674-5309693 | MS.gene66489:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5307221 | 5310226 | 5307221 | ID=MS.gene66489 |
| chr1.4 | mRNA | 5307221 | 5310226 | 5307221 | ID=MS.gene66489.t1;Parent=MS.gene66489 |
| chr1.4 | exon | 5310165 | 5310226 | 5310165 | ID=MS.gene66489.t1.exon1;Parent=MS.gene66489.t1 |
| chr1.4 | CDS | 5310165 | 5310226 | 5310165 | ID=cds.MS.gene66489.t1;Parent=MS.gene66489.t1 |
| chr1.4 | exon | 5309815 | 5309887 | 5309815 | ID=MS.gene66489.t1.exon2;Parent=MS.gene66489.t1 |
| chr1.4 | CDS | 5309815 | 5309887 | 5309815 | ID=cds.MS.gene66489.t1;Parent=MS.gene66489.t1 |
| chr1.4 | exon | 5309564 | 5309716 | 5309564 | ID=MS.gene66489.t1.exon3;Parent=MS.gene66489.t1 |
| chr1.4 | CDS | 5309564 | 5309716 | 5309564 | ID=cds.MS.gene66489.t1;Parent=MS.gene66489.t1 |
| chr1.4 | exon | 5307221 | 5307490 | 5307221 | ID=MS.gene66489.t1.exon4;Parent=MS.gene66489.t1 |
| chr1.4 | CDS | 5307221 | 5307490 | 5307221 | ID=cds.MS.gene66489.t1;Parent=MS.gene66489.t1 |
| Gene Sequence |
| Protein sequence |
