Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66492.t1 | AES98673.1 | 30.6 | 255 | 141 | 3 | 58 | 279 | 20 | 271 | 2.30E-22 | 116.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66492.t1 | G7JZK4 | 30.6 | 255 | 141 | 3 | 58 | 279 | 20 | 271 | 1.6e-22 | 116.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66492.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66492.t1 | MTR_5g071410 | 31.250 | 256 | 140 | 3 | 57 | 279 | 19 | 271 | 4.84e-32 | 119 |
| MS.gene66492.t1 | MTR_3g082920 | 47.414 | 116 | 40 | 3 | 61 | 169 | 317 | 418 | 1.68e-20 | 90.9 |
| MS.gene66492.t1 | MTR_6g477950 | 51.765 | 85 | 40 | 1 | 192 | 276 | 61 | 144 | 1.81e-20 | 89.4 |
| MS.gene66492.t1 | MTR_7g117585 | 39.623 | 106 | 64 | 0 | 174 | 279 | 43 | 148 | 7.98e-20 | 84.0 |
| MS.gene66492.t1 | MTR_8g069780 | 42.500 | 80 | 46 | 0 | 197 | 276 | 76 | 155 | 2.45e-15 | 72.0 |
| MS.gene66492.t1 | MTR_2g012700 | 31.034 | 116 | 78 | 1 | 161 | 276 | 6 | 119 | 1.88e-14 | 68.9 |
| MS.gene66492.t1 | MTR_3g117130 | 43.902 | 82 | 46 | 0 | 195 | 276 | 197 | 278 | 7.32e-14 | 70.9 |
| MS.gene66492.t1 | MTR_2g062330 | 36.585 | 82 | 51 | 1 | 195 | 276 | 58 | 138 | 2.44e-13 | 66.2 |
| MS.gene66492.t1 | MTR_0010s0310 | 25.424 | 236 | 137 | 6 | 56 | 267 | 20 | 240 | 1.52e-12 | 66.2 |
| MS.gene66492.t1 | MTR_2g437520 | 39.759 | 83 | 47 | 1 | 197 | 276 | 121 | 203 | 2.24e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAGAAGTCATGAAATTT+TGG | 0.173937 | 1.4:+5318857 | None:intergenic |
| AACGCTTTGTTGTTGGTAAA+TGG | 0.198975 | 1.4:+5319738 | None:intergenic |
| GCAAACTTATCACTTCAAAT+AGG | 0.238418 | 1.4:-5318399 | MS.gene66492:CDS |
| AGCCAAAATTTCATGACTTC+TGG | 0.304534 | 1.4:-5318859 | MS.gene66492:CDS |
| TCACCTAAGTATTTCTCATT+TGG | 0.308885 | 1.4:+5318373 | None:intergenic |
| AAACTGCAAAAGTATGATTA+TGG | 0.310821 | 1.4:-5318937 | MS.gene66492:CDS |
| CAAACTTATCACTTCAAATA+GGG | 0.313955 | 1.4:-5318398 | MS.gene66492:CDS |
| ACCTGTGTACGAGTTAAGTT+TGG | 0.331180 | 1.4:-5318892 | MS.gene66492:CDS |
| TTGTTTAGCACTTCCCCAAT+AGG | 0.356270 | 1.4:-5318498 | MS.gene66492:intron |
| CAGGTTCAAGATGATGGTTT+TGG | 0.363392 | 1.4:-5318764 | MS.gene66492:CDS |
| CAGTTGATAGATATCCTATT+GGG | 0.375059 | 1.4:+5318484 | None:intergenic |
| TCTACGGTCCTTCACGAACT+TGG | 0.378944 | 1.4:+5318342 | None:intergenic |
| AGTATGATTATGGATGGATT+AGG | 0.381484 | 1.4:-5318927 | MS.gene66492:CDS |
| CGCTTTCCAATGGAATCAAC+CGG | 0.384860 | 1.4:-5319657 | MS.gene66492:CDS |
| ACAGGAGAGCATTACTTTGC+AGG | 0.396717 | 1.4:-5318449 | MS.gene66492:CDS |
| ACGTCGCAGCTAAATTCAAC+TGG | 0.409112 | 1.4:-5318831 | MS.gene66492:CDS |
| ACTCGTACACAGGTGCCATT+TGG | 0.409607 | 1.4:+5318901 | None:intergenic |
| TAAGTTTGCACTCATATTCT+CGG | 0.417716 | 1.4:+5318413 | None:intergenic |
| TTTGTTGTTGGTAAATGGTA+AGG | 0.431406 | 1.4:+5319743 | None:intergenic |
| GCAGTTGATAGATATCCTAT+TGG | 0.431455 | 1.4:+5318483 | None:intergenic |
| GTATGATTATGGATGGATTA+GGG | 0.435600 | 1.4:-5318926 | MS.gene66492:CDS |
| GGTTGTCCGACGTCGTCGTT+AGG | 0.436504 | 1.4:-5318257 | None:intergenic |
| AACTATCGTTTATCCACAAC+AGG | 0.438370 | 1.4:-5319135 | MS.gene66492:intron |
| GCGAAAGGGTTTGAGTGAAA+TGG | 0.449584 | 1.4:+5319696 | None:intergenic |
| ACCTCCACAAAGAGACGATT+GGG | 0.451863 | 1.4:+5318277 | None:intergenic |
| GGGAGAAACCAACACGTGTT+AGG | 0.454348 | 1.4:-5318810 | MS.gene66492:CDS |
| TGGATAAAACGCTTTGTTGT+TGG | 0.462685 | 1.4:+5319731 | None:intergenic |
| AGAAATACTTAGGTGAAGAT+TGG | 0.462766 | 1.4:-5318366 | MS.gene66492:CDS |
| TCCTCCCAATCGTCTCTTTG+TGG | 0.465471 | 1.4:-5318281 | MS.gene66492:CDS |
| GTAATGCTCTCCTGTGTGTC+GGG | 0.473972 | 1.4:+5318457 | None:intergenic |
| CAATGGAATCAACCGGGAAA+AGG | 0.480353 | 1.4:-5319650 | MS.gene66492:intron |
| ACATCTCTTGTTGTTAGCTG+TGG | 0.496090 | 1.4:+5318621 | None:intergenic |
| TATCACCTTTCCTTAGTCTA+CGG | 0.505505 | 1.4:+5318326 | None:intergenic |
| CCTGTGTACGAGTTAAGTTT+GGG | 0.512909 | 1.4:-5318891 | MS.gene66492:CDS |
| GGTCCAAATGAGAAATACTT+AGG | 0.515401 | 1.4:-5318376 | MS.gene66492:CDS |
| TGCAAAAGTATGATTATGGA+TGG | 0.520237 | 1.4:-5318933 | MS.gene66492:CDS |
| TTGTTGTTGGTAAATGGTAA+GGG | 0.524304 | 1.4:+5319744 | None:intergenic |
| CGTGTTAGGCTTGAATATAC+TGG | 0.538941 | 1.4:-5318796 | MS.gene66492:CDS |
| TCGTGAAGGACCGTAGACTA+AGG | 0.541590 | 1.4:-5318336 | MS.gene66492:CDS |
| TGGATGAAGTAGGAAGTTCA+AGG | 0.544776 | 1.4:-5318741 | MS.gene66492:CDS |
| AACCTCCACAAAGAGACGAT+TGG | 0.547571 | 1.4:+5318276 | None:intergenic |
| CAACAAGAGATGTCAAGTAA+TGG | 0.551729 | 1.4:-5318611 | MS.gene66492:intron |
| AAAATTTCATGACTTCTGGT+AGG | 0.554651 | 1.4:-5318855 | MS.gene66492:CDS |
| CTACGGTCCTTCACGAACTT+GGG | 0.555110 | 1.4:+5318343 | None:intergenic |
| AAATTTCATGACTTCTGGTA+GGG | 0.559101 | 1.4:-5318854 | MS.gene66492:CDS |
| TATTCAAGCCTAACACGTGT+TGG | 0.559860 | 1.4:+5318802 | None:intergenic |
| TTCAAGGGGAAATACAATCA+AGG | 0.560197 | 1.4:-5318725 | MS.gene66492:CDS |
| TCCCAATCGTCTCTTTGTGG+AGG | 0.560244 | 1.4:-5318278 | MS.gene66492:CDS |
| AGTAATGCTCTCCTGTGTGT+CGG | 0.561176 | 1.4:+5318456 | None:intergenic |
| CAACACACTCCGCTTTCCAA+TGG | 0.569040 | 1.4:-5319667 | MS.gene66492:CDS |
| TGTTGTTGGTAAATGGTAAG+GGG | 0.572236 | 1.4:+5319745 | None:intergenic |
| GTGTGTTGGTGAAAGCGAAA+GGG | 0.575206 | 1.4:+5319682 | None:intergenic |
| GGATGGATTAGGGATCCAAA+TGG | 0.577469 | 1.4:-5318916 | MS.gene66492:CDS |
| TGGATAAACGATAGTTTCGA+AGG | 0.578245 | 1.4:+5319142 | None:intergenic |
| AGTGTGTTGGTGAAAGCGAA+AGG | 0.581836 | 1.4:+5319681 | None:intergenic |
| CCCAAACTTAACTCGTACAC+AGG | 0.584015 | 1.4:+5318891 | None:intergenic |
| CGGTTGATTCCATTGGAAAG+CGG | 0.587817 | 1.4:+5319658 | None:intergenic |
| GGATGAAGTAGGAAGTTCAA+GGG | 0.592041 | 1.4:-5318740 | MS.gene66492:CDS |
| AAACTTATCACTTCAAATAG+GGG | 0.599416 | 1.4:-5318397 | MS.gene66492:CDS |
| TGAAATGGACGAGATTTATG+TGG | 0.614622 | 1.4:+5319711 | None:intergenic |
| CGTCGCAGCTAAATTCAACT+GGG | 0.629434 | 1.4:-5318830 | MS.gene66492:CDS |
| CATTGGAAAGCGGAGTGTGT+TGG | 0.637599 | 1.4:+5319668 | None:intergenic |
| CAACTGCTTACCCGACACAC+AGG | 0.661269 | 1.4:-5318467 | MS.gene66492:CDS |
| TCCACAAAGAGACGATTGGG+AGG | 0.661851 | 1.4:+5318280 | None:intergenic |
| AGTTGATAGATATCCTATTG+GGG | 0.667078 | 1.4:+5318485 | None:intergenic |
| GCTTTCCAATGGAATCAACC+GGG | 0.669471 | 1.4:-5319656 | MS.gene66492:CDS |
| AAGGACCGTAGACTAAGGAA+AGG | 0.676015 | 1.4:-5318331 | MS.gene66492:CDS |
| TAATATCCTAACGACGACGT+CGG | 0.679159 | 1.4:+5318251 | None:intergenic |
| AGATTGGCCCAAGTTCGTGA+AGG | 0.684958 | 1.4:-5318350 | MS.gene66492:CDS |
| TAGTTTCGAAGGAATTCACG+AGG | 0.691303 | 1.4:+5319153 | None:intergenic |
| GATGAAGTAGGAAGTTCAAG+GGG | 0.704354 | 1.4:-5318739 | MS.gene66492:CDS |
| AGTTTCGAAGGAATTCACGA+GGG | 0.714111 | 1.4:+5319154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCATAAATAATATTAATT+TGG | + | chr1.4:5319438-5319457 | None:intergenic | 10.0% |
| !!! | TTTTTATTATATTCTTTCTA+TGG | + | chr1.4:5318747-5318766 | None:intergenic | 10.0% |
| !! | ATACATATTTATGATTTAAC+AGG | - | chr1.4:5318670-5318689 | MS.gene66492:CDS | 15.0% |
| !! | TTTCAGTAACAAAAAAAATT+TGG | + | chr1.4:5318573-5318592 | None:intergenic | 15.0% |
| !!! | ATCTTTTATCAAATTTCATA+TGG | - | chr1.4:5318946-5318965 | MS.gene66492:CDS | 15.0% |
| !! | TAAAACATAGAAGGTAATAT+GGG | - | chr1.4:5318486-5318505 | MS.gene66492:CDS | 20.0% |
| ! | AAACTTATCACTTCAAATAG+GGG | - | chr1.4:5319617-5319636 | MS.gene66492:intron | 25.0% |
| ! | ACATATAAGATCTATAAGTC+AGG | + | chr1.4:5318974-5318993 | None:intergenic | 25.0% |
| ! | ATATAAGATCTATAAGTCAG+GGG | + | chr1.4:5318972-5318991 | None:intergenic | 25.0% |
| ! | CAAACTTATCACTTCAAATA+GGG | - | chr1.4:5319616-5319635 | MS.gene66492:intron | 25.0% |
| ! | CAACGTAAATATAGTAATAG+TGG | - | chr1.4:5318437-5318456 | MS.gene66492:CDS | 25.0% |
| ! | CACTATTACTATATTTACGT+TGG | + | chr1.4:5318439-5318458 | None:intergenic | 25.0% |
| ! | CATATAAGATCTATAAGTCA+GGG | + | chr1.4:5318973-5318992 | None:intergenic | 25.0% |
| ! | CTAAAACATAGAAGGTAATA+TGG | - | chr1.4:5318485-5318504 | MS.gene66492:CDS | 25.0% |
| !! | AAACTGCAAAAGTATGATTA+TGG | - | chr1.4:5319077-5319096 | MS.gene66492:intron | 25.0% |
| !! | ATATTTTGTAATACCTGTTG+TGG | + | chr1.4:5318895-5318914 | None:intergenic | 25.0% |
| AAAATTTCATGACTTCTGGT+AGG | - | chr1.4:5319159-5319178 | MS.gene66492:CDS | 30.0% | |
| AAATTGCATGTTATAACCGT+CGG | + | chr1.4:5318621-5318640 | None:intergenic | 30.0% | |
| AAATTTCATGACTTCTGGTA+GGG | - | chr1.4:5319160-5319179 | MS.gene66492:CDS | 30.0% | |
| ACTTGTATCTTTGACTACAA+AGG | + | chr1.4:5319026-5319045 | None:intergenic | 30.0% | |
| AGAAATACTTAGGTGAAGAT+TGG | - | chr1.4:5319648-5319667 | MS.gene66492:intron | 30.0% | |
| CACATATCCTTATCAAGTTT+AGG | - | chr1.4:5318595-5318614 | MS.gene66492:intron | 30.0% | |
| CTAAACTTGATAAGGATATG+TGG | + | chr1.4:5318597-5318616 | None:intergenic | 30.0% | |
| GCAAACTTATCACTTCAAAT+AGG | - | chr1.4:5319615-5319634 | MS.gene66492:intron | 30.0% | |
| TAAGTTTGCACTCATATTCT+CGG | + | chr1.4:5319604-5319623 | None:intergenic | 30.0% | |
| TCACCTAAGTATTTCTCATT+TGG | + | chr1.4:5319644-5319663 | None:intergenic | 30.0% | |
| ! | ACATGCAATTTTGTAATGAG+TGG | - | chr1.4:5318630-5318649 | MS.gene66492:CDS | 30.0% |
| ! | AGAGTAAAATTACCTTTTCC+CGG | + | chr1.4:5318379-5318398 | None:intergenic | 30.0% |
| ! | AGTATGATTATGGATGGATT+AGG | - | chr1.4:5319087-5319106 | MS.gene66492:intron | 30.0% |
| ! | CTGATTATGATCATTTTGAG+AGG | - | chr1.4:5319357-5319376 | MS.gene66492:intron | 30.0% |
| ! | GTAATATGGGTTCTTTTCTA+GGG | - | chr1.4:5318499-5318518 | MS.gene66492:intron | 30.0% |
| ! | TACCAGAAGTCATGAAATTT+TGG | + | chr1.4:5319160-5319179 | None:intergenic | 30.0% |
| ! | TGCAAAAGTATGATTATGGA+TGG | - | chr1.4:5319081-5319100 | MS.gene66492:intron | 30.0% |
| ! | TTGTTGTTGGTAAATGGTAA+GGG | + | chr1.4:5318273-5318292 | None:intergenic | 30.0% |
| ! | TTTTAACAGGTTCAAGATGA+TGG | - | chr1.4:5319244-5319263 | MS.gene66492:intron | 30.0% |
| ! | TTTTTACCTATCCCATGTTA+TGG | - | chr1.4:5318708-5318727 | MS.gene66492:CDS | 30.0% |
| !! | AGTTGATAGATATCCTATTG+GGG | + | chr1.4:5319532-5319551 | None:intergenic | 30.0% |
| !! | CAGTTGATAGATATCCTATT+GGG | + | chr1.4:5319533-5319552 | None:intergenic | 30.0% |
| !! | GTATGATTATGGATGGATTA+GGG | - | chr1.4:5319088-5319107 | MS.gene66492:intron | 30.0% |
| !! | TTTGTTGTTGGTAAATGGTA+AGG | + | chr1.4:5318274-5318293 | None:intergenic | 30.0% |
| AACTATCGTTTATCCACAAC+AGG | - | chr1.4:5318879-5318898 | MS.gene66492:CDS | 35.0% | |
| AGCCAAAATTTCATGACTTC+TGG | - | chr1.4:5319155-5319174 | MS.gene66492:CDS | 35.0% | |
| CAACAAGAGATGTCAAGTAA+TGG | - | chr1.4:5319403-5319422 | MS.gene66492:intron | 35.0% | |
| CTATCCCATGTTATGGAATT+CGG | - | chr1.4:5318715-5318734 | MS.gene66492:CDS | 35.0% | |
| GGTCCAAATGAGAAATACTT+AGG | - | chr1.4:5319638-5319657 | MS.gene66492:intron | 35.0% | |
| TAAGGTGGCTAAAACATAGA+AGG | - | chr1.4:5318477-5318496 | MS.gene66492:CDS | 35.0% | |
| TATCACCTTTCCTTAGTCTA+CGG | + | chr1.4:5319691-5319710 | None:intergenic | 35.0% | |
| TGAAATGGACGAGATTTATG+TGG | + | chr1.4:5318306-5318325 | None:intergenic | 35.0% | |
| TGGATAAACGATAGTTTCGA+AGG | + | chr1.4:5318875-5318894 | None:intergenic | 35.0% | |
| TTCAAGGGGAAATACAATCA+AGG | - | chr1.4:5319289-5319308 | MS.gene66492:intron | 35.0% | |
| ! | AATATACTGGCGCTTTTAAC+AGG | - | chr1.4:5319231-5319250 | MS.gene66492:intron | 35.0% |
| ! | GGTAATATGGGTTCTTTTCT+AGG | - | chr1.4:5318498-5318517 | MS.gene66492:intron | 35.0% |
| ! | TGGATAAAACGCTTTGTTGT+TGG | + | chr1.4:5318286-5318305 | None:intergenic | 35.0% |
| ! | TGTTGTTGGTAAATGGTAAG+GGG | + | chr1.4:5318272-5318291 | None:intergenic | 35.0% |
| !! | AACGCTTTGTTGTTGGTAAA+TGG | + | chr1.4:5318279-5318298 | None:intergenic | 35.0% |
| !! | GCAGTTGATAGATATCCTAT+TGG | + | chr1.4:5319534-5319553 | None:intergenic | 35.0% |
| ACCTGTGTACGAGTTAAGTT+TGG | - | chr1.4:5319122-5319141 | MS.gene66492:intron | 40.0% | |
| AGTTTCGAAGGAATTCACGA+GGG | + | chr1.4:5318863-5318882 | None:intergenic | 40.0% | |
| CCTGTGTACGAGTTAAGTTT+GGG | - | chr1.4:5319123-5319142 | MS.gene66492:intron | 40.0% | |
| CGAATTCCATAACATGGGAT+AGG | + | chr1.4:5318717-5318736 | None:intergenic | 40.0% | |
| CGTGTTAGGCTTGAATATAC+TGG | - | chr1.4:5319218-5319237 | MS.gene66492:intron | 40.0% | |
| GATGAAGTAGGAAGTTCAAG+GGG | - | chr1.4:5319275-5319294 | MS.gene66492:intron | 40.0% | |
| GGATGAAGTAGGAAGTTCAA+GGG | - | chr1.4:5319274-5319293 | MS.gene66492:intron | 40.0% | |
| TAGTTTCGAAGGAATTCACG+AGG | + | chr1.4:5318864-5318883 | None:intergenic | 40.0% | |
| TATTCAAGCCTAACACGTGT+TGG | + | chr1.4:5319215-5319234 | None:intergenic | 40.0% | |
| TCCACCGAATTCCATAACAT+GGG | + | chr1.4:5318722-5318741 | None:intergenic | 40.0% | |
| TGGATGAAGTAGGAAGTTCA+AGG | - | chr1.4:5319273-5319292 | MS.gene66492:intron | 40.0% | |
| TTCCACCGAATTCCATAACA+TGG | + | chr1.4:5318723-5318742 | None:intergenic | 40.0% | |
| TTGTTTAGCACTTCCCCAAT+AGG | - | chr1.4:5319516-5319535 | MS.gene66492:intron | 40.0% | |
| !! | ACATCTCTTGTTGTTAGCTG+TGG | + | chr1.4:5319396-5319415 | None:intergenic | 40.0% |
| !! | CAGGTTCAAGATGATGGTTT+TGG | - | chr1.4:5319250-5319269 | MS.gene66492:intron | 40.0% |
| !!! | ATGGTTTTGGTGGATGAAGT+AGG | - | chr1.4:5319263-5319282 | MS.gene66492:intron | 40.0% |
| !!! | GTTCAAGATGATGGTTTTGG+TGG | - | chr1.4:5319253-5319272 | MS.gene66492:intron | 40.0% |
| AACCTCCACAAAGAGACGAT+TGG | + | chr1.4:5319741-5319760 | None:intergenic | 45.0% | |
| AAGGACCGTAGACTAAGGAA+AGG | - | chr1.4:5319683-5319702 | MS.gene66492:CDS | 45.0% | |
| ACCTCCACAAAGAGACGATT+GGG | + | chr1.4:5319740-5319759 | None:intergenic | 45.0% | |
| ACGTCGCAGCTAAATTCAAC+TGG | - | chr1.4:5319183-5319202 | MS.gene66492:CDS | 45.0% | |
| AGTAATGCTCTCCTGTGTGT+CGG | + | chr1.4:5319561-5319580 | None:intergenic | 45.0% | |
| ATAGTGGTCCCCTATAGTCT+TGG | - | chr1.4:5318453-5318472 | MS.gene66492:CDS | 45.0% | |
| CAATGGAATCAACCGGGAAA+AGG | - | chr1.4:5318364-5318383 | MS.gene66492:CDS | 45.0% | |
| CACCTTAGCCAAGACTATAG+GGG | + | chr1.4:5318464-5318483 | None:intergenic | 45.0% | |
| CCACCTTAGCCAAGACTATA+GGG | + | chr1.4:5318465-5318484 | None:intergenic | 45.0% | |
| CCCAAACTTAACTCGTACAC+AGG | + | chr1.4:5319126-5319145 | None:intergenic | 45.0% | |
| CCTTATCAAGTTTAGGCCGA+CGG | - | chr1.4:5318602-5318621 | MS.gene66492:intron | 45.0% | |
| CGCTTTCCAATGGAATCAAC+CGG | - | chr1.4:5318357-5318376 | MS.gene66492:CDS | 45.0% | |
| CGTCGCAGCTAAATTCAACT+GGG | - | chr1.4:5319184-5319203 | MS.gene66492:intron | 45.0% | |
| GCGAAAGGGTTTGAGTGAAA+TGG | + | chr1.4:5318321-5318340 | None:intergenic | 45.0% | |
| GCTTTCCAATGGAATCAACC+GGG | - | chr1.4:5318358-5318377 | MS.gene66492:CDS | 45.0% | |
| TCCCATGTTATGGAATTCGG+TGG | - | chr1.4:5318718-5318737 | MS.gene66492:CDS | 45.0% | |
| ! | AGTGTGTTGGTGAAAGCGAA+AGG | + | chr1.4:5318336-5318355 | None:intergenic | 45.0% |
| ! | CGGTTGATTCCATTGGAAAG+CGG | + | chr1.4:5318359-5318378 | None:intergenic | 45.0% |
| ! | GTGTGTTGGTGAAAGCGAAA+GGG | + | chr1.4:5318335-5318354 | None:intergenic | 45.0% |
| !! | ACAGGAGAGCATTACTTTGC+AGG | - | chr1.4:5319565-5319584 | MS.gene66492:intron | 45.0% |
| !! | CTTTTCCCGGTTGATTCCAT+TGG | + | chr1.4:5318366-5318385 | None:intergenic | 45.0% |
| !! | GGATGGATTAGGGATCCAAA+TGG | - | chr1.4:5319098-5319117 | MS.gene66492:intron | 45.0% |
| CAACACACTCCGCTTTCCAA+TGG | - | chr1.4:5318347-5318366 | MS.gene66492:CDS | 50.0% | |
| CATTGGAAAGCGGAGTGTGT+TGG | + | chr1.4:5318349-5318368 | None:intergenic | 50.0% | |
| CCGTCGGCCTAAACTTGATA+AGG | + | chr1.4:5318605-5318624 | None:intergenic | 50.0% | |
| CTACGGTCCTTCACGAACTT+GGG | + | chr1.4:5319674-5319693 | None:intergenic | 50.0% | |
| GCCACCTTAGCCAAGACTAT+AGG | + | chr1.4:5318466-5318485 | None:intergenic | 50.0% | |
| GGGAGAAACCAACACGTGTT+AGG | - | chr1.4:5319204-5319223 | MS.gene66492:intron | 50.0% | |
| GTAATGCTCTCCTGTGTGTC+GGG | + | chr1.4:5319560-5319579 | None:intergenic | 50.0% | |
| TCCACAAAGAGACGATTGGG+AGG | + | chr1.4:5319737-5319756 | None:intergenic | 50.0% | |
| TCCCAATCGTCTCTTTGTGG+AGG | - | chr1.4:5319736-5319755 | MS.gene66492:CDS | 50.0% | |
| TCCTCCCAATCGTCTCTTTG+TGG | - | chr1.4:5319733-5319752 | MS.gene66492:CDS | 50.0% | |
| TCGTGAAGGACCGTAGACTA+AGG | - | chr1.4:5319678-5319697 | MS.gene66492:CDS | 50.0% | |
| TCTACGGTCCTTCACGAACT+TGG | + | chr1.4:5319675-5319694 | None:intergenic | 50.0% | |
| ! | AGATTGGCCCAAGTTCGTGA+AGG | - | chr1.4:5319664-5319683 | MS.gene66492:CDS | 50.0% |
| ! | CCCTATAGTCTTGGCTAAGG+TGG | - | chr1.4:5318462-5318481 | MS.gene66492:CDS | 50.0% |
| ! | GTCCCCTATAGTCTTGGCTA+AGG | - | chr1.4:5318459-5318478 | MS.gene66492:CDS | 50.0% |
| !! | ACTCGTACACAGGTGCCATT+TGG | + | chr1.4:5319116-5319135 | None:intergenic | 50.0% |
| CAACTGCTTACCCGACACAC+AGG | - | chr1.4:5319547-5319566 | MS.gene66492:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5318258 | 5319778 | 5318258 | ID=MS.gene66492 |
| chr1.4 | mRNA | 5318258 | 5319778 | 5318258 | ID=MS.gene66492.t1;Parent=MS.gene66492 |
| chr1.4 | exon | 5319651 | 5319778 | 5319651 | ID=MS.gene66492.t1.exon1;Parent=MS.gene66492.t1 |
| chr1.4 | CDS | 5319651 | 5319778 | 5319651 | ID=cds.MS.gene66492.t1;Parent=MS.gene66492.t1 |
| chr1.4 | exon | 5319136 | 5319202 | 5319136 | ID=MS.gene66492.t1.exon2;Parent=MS.gene66492.t1 |
| chr1.4 | CDS | 5319136 | 5319202 | 5319136 | ID=cds.MS.gene66492.t1;Parent=MS.gene66492.t1 |
| chr1.4 | exon | 5318612 | 5319004 | 5318612 | ID=MS.gene66492.t1.exon3;Parent=MS.gene66492.t1 |
| chr1.4 | CDS | 5318612 | 5319004 | 5318612 | ID=cds.MS.gene66492.t1;Parent=MS.gene66492.t1 |
| chr1.4 | exon | 5318258 | 5318512 | 5318258 | ID=MS.gene66492.t1.exon4;Parent=MS.gene66492.t1 |
| chr1.4 | CDS | 5318258 | 5318512 | 5318258 | ID=cds.MS.gene66492.t1;Parent=MS.gene66492.t1 |
| Gene Sequence |
| Protein sequence |
