AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66597

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66597.t1 MTR_4g049790 72.809 559 110 7 9 537 17 563 0.0 757
MS.gene66597.t1 MTR_4g049760 75.636 550 76 5 1 520 1 522 0.0 731
MS.gene66597.t1 MTR_4g047580 70.803 548 122 7 20 537 1 540 0.0 731
MS.gene66597.t1 MTR_2g088000 42.857 518 191 12 76 535 120 590 8.67e-104 324
MS.gene66597.t1 MTR_2g023930 40.974 493 216 17 52 498 67 530 3.01e-86 277
MS.gene66597.t1 MTR_4g132430 41.189 454 217 11 52 485 35 458 4.15e-80 259
MS.gene66597.t1 MTR_3g053330 35.141 461 229 14 52 497 39 444 2.47e-72 238
MS.gene66597.t1 MTR_4g132430 42.735 351 165 7 144 485 1 324 1.05e-66 220
MS.gene66597.t1 MTR_7g110720 36.228 403 180 10 120 521 93 419 1.09e-60 206
MS.gene66597.t1 MTR_7g110720 47.737 243 103 6 281 522 174 393 7.25e-57 196
MS.gene66597.t1 MTR_2g045360 52.795 161 71 2 267 422 182 342 2.56e-47 171
MS.gene66597.t1 MTR_7g009730 29.116 498 252 18 96 515 25 499 6.10e-40 153
MS.gene66597.t1 MTR_4g094412 38.060 268 122 6 281 512 228 487 7.69e-37 143
MS.gene66597.t1 MTR_4g094412 38.060 268 122 6 281 512 219 478 1.19e-36 142
MS.gene66597.t1 MTR_4g107970 34.510 255 122 9 129 356 2 238 2.29e-31 128
MS.gene66597.t1 MTR_4g107970 32.576 264 138 8 119 356 66 315 2.75e-31 128
MS.gene66597.t1 MTR_4g007060 37.838 148 68 4 273 420 105 228 2.60e-25 106
MS.gene66597.t1 MTR_4g007060 37.838 148 68 4 273 420 139 262 3.48e-25 106
MS.gene66597.t1 MTR_7g011820 47.423 97 50 1 272 368 386 481 2.83e-23 103
MS.gene66597.t1 MTR_5g044695 71.698 53 15 0 274 326 55 107 3.59e-23 94.7
MS.gene66597.t1 MTR_2g105060 51.282 78 36 1 282 357 78 155 1.51e-22 97.1
MS.gene66597.t1 MTR_2g105060 51.282 78 36 1 282 357 153 230 2.01e-22 98.6
MS.gene66597.t1 MTR_5g042920 46.392 97 47 2 266 358 286 381 2.16e-22 100
MS.gene66597.t1 MTR_3g056100 42.202 109 59 2 269 374 244 351 3.04e-22 100
MS.gene66597.t1 MTR_3g056100 42.202 109 59 2 269 374 231 338 3.05e-22 99.8
MS.gene66597.t1 MTR_3g056100 42.202 109 59 2 269 374 388 495 3.22e-22 100
MS.gene66597.t1 MTR_3g056100 42.202 109 59 2 269 374 375 482 3.48e-22 100
MS.gene66597.t1 MTR_1g013790 36.434 129 67 4 242 356 34 161 4.48e-22 96.3
MS.gene66597.t1 MTR_5g074400 42.063 126 66 3 238 358 358 481 5.19e-22 100
MS.gene66597.t1 MTR_6g038890 71.698 53 15 0 274 326 166 218 5.28e-22 95.1
MS.gene66597.t1 MTR_3g009470 53.750 80 36 1 279 358 478 556 9.62e-22 99.8
MS.gene66597.t1 MTR_5g094430 52.500 80 37 1 279 358 235 313 1.25e-21 97.8
MS.gene66597.t1 MTR_5g094430 52.500 80 37 1 279 358 213 291 1.32e-21 97.4
MS.gene66597.t1 MTR_4g013260 53.165 79 36 1 278 356 318 395 1.61e-21 98.2
MS.gene66597.t1 MTR_4g013260 40.698 86 44 3 280 363 170 250 9.74e-12 67.8
MS.gene66597.t1 MTR_7g071120 54.321 81 36 1 278 358 306 385 1.64e-21 98.2
MS.gene66597.t1 MTR_5g094430 52.500 80 37 1 279 358 347 425 2.68e-21 97.8
MS.gene66597.t1 MTR_3g106060 38.655 119 69 1 235 353 81 195 4.37e-21 94.0
MS.gene66597.t1 MTR_4g082580 48.148 81 41 1 278 358 260 339 5.34e-21 95.5
MS.gene66597.t1 MTR_3g031220 43.564 101 56 1 257 357 326 425 6.74e-21 96.3
MS.gene66597.t1 MTR_3g031220 39.506 81 43 3 280 360 186 260 5.56e-11 65.5
MS.gene66597.t1 MTR_7g080020 44.762 105 55 2 256 358 451 554 8.46e-21 97.1
MS.gene66597.t1 MTR_7g080020 32.203 177 102 8 196 360 172 342 2.83e-14 76.3
MS.gene66597.t1 MTR_7g028415 54.286 70 31 1 286 355 83 151 1.47e-20 89.4
MS.gene66597.t1 MTR_7g028710 54.286 70 31 1 286 355 83 151 1.47e-20 89.4
MS.gene66597.t1 MTR_3g104750 42.000 100 57 1 255 354 63 161 2.80e-20 88.6
MS.gene66597.t1 MTR_7g080000 40.870 115 65 2 246 358 380 493 3.28e-20 94.7
MS.gene66597.t1 MTR_8g096730 38.384 99 60 1 261 359 35 132 4.77e-20 87.4
MS.gene66597.t1 MTR_4g094588 43.564 101 55 2 283 383 165 263 5.59e-20 91.7
MS.gene66597.t1 MTR_7g079010 48.750 80 40 1 275 354 120 198 1.24e-19 88.2
MS.gene66597.t1 MTR_2g033820 47.436 78 40 1 283 360 190 266 1.62e-19 90.9
MS.gene66597.t1 MTR_1g013760 43.478 92 52 0 281 372 125 216 1.65e-19 89.4
MS.gene66597.t1 MTR_7g109800 42.553 94 49 2 281 374 130 218 2.63e-19 89.0
MS.gene66597.t1 MTR_7g109600 41.414 99 53 2 275 371 30 125 6.71e-19 87.0
MS.gene66597.t1 MTR_1g015140 51.351 74 35 1 281 354 87 159 7.06e-19 84.3
MS.gene66597.t1 MTR_1g086790 46.154 78 41 1 283 360 145 221 1.17e-18 87.4
MS.gene66597.t1 MTR_4g122530 47.368 76 39 1 282 357 194 268 3.62e-18 87.4
MS.gene66597.t1 MTR_5g097490 42.391 92 52 1 267 358 223 313 5.53e-18 86.3
MS.gene66597.t1 MTR_3g095040 50.667 75 36 1 283 357 105 178 7.77e-18 82.4
MS.gene66597.t1 MTR_5g091390 46.154 78 41 1 283 360 144 220 7.98e-18 84.7
MS.gene66597.t1 MTR_2g032030 46.667 75 40 0 292 366 263 337 9.81e-18 86.3
MS.gene66597.t1 MTR_2g032030 46.667 75 40 0 292 366 263 337 1.40e-17 85.5
MS.gene66597.t1 MTR_8g092010 46.753 77 40 1 283 359 95 170 1.84e-17 80.9
MS.gene66597.t1 MTR_7g100510 43.210 81 45 1 276 356 341 420 3.95e-17 84.3
MS.gene66597.t1 MTR_8g087000 50.794 63 31 0 296 358 77 139 1.21e-16 80.1
MS.gene66597.t1 MTR_8g087000 50.794 63 31 0 296 358 76 138 1.24e-16 80.1
MS.gene66597.t1 MTR_8g098945 45.833 72 39 0 295 366 128 199 2.25e-16 79.7
MS.gene66597.t1 MTR_1g009613 47.059 85 43 1 281 363 245 329 2.65e-16 80.9
MS.gene66597.t1 MTR_2g024350 30.714 140 87 2 291 420 3 142 2.86e-16 78.6
MS.gene66597.t1 MTR_5g043880 44.872 78 42 1 276 353 104 180 2.93e-16 79.7
MS.gene66597.t1 MTR_4g094908 52.308 65 31 0 294 358 264 328 3.39e-16 80.5
MS.gene66597.t1 MTR_7g079040 46.667 75 40 0 292 366 150 224 3.60e-16 80.1
MS.gene66597.t1 MTR_8g028565 46.667 75 40 0 292 366 151 225 3.72e-16 80.1
MS.gene66597.t1 MTR_8g007270 45.570 79 42 1 275 353 133 210 4.18e-16 78.2
MS.gene66597.t1 MTR_2g083870 43.038 79 45 0 287 365 71 149 7.89e-16 78.2
MS.gene66597.t1 MTR_1g099600 42.857 91 50 1 296 386 185 273 1.25e-15 78.2
MS.gene66597.t1 MTR_2g016770 49.180 61 31 0 296 356 35 95 2.84e-15 75.5
MS.gene66597.t1 MTR_3g095080 40.217 92 53 2 283 374 131 220 3.24e-15 75.5
MS.gene66597.t1 MTR_2g016770 49.180 61 31 0 296 356 27 87 3.30e-15 75.1
MS.gene66597.t1 MTR_1g077780 46.053 76 40 1 283 358 49 123 3.65e-15 73.2
MS.gene66597.t1 MTR_5g016610 51.613 62 30 0 294 355 197 258 4.11e-15 76.3
MS.gene66597.t1 MTR_3g095080 40.217 92 53 2 283 374 155 244 5.30e-15 75.1
MS.gene66597.t1 MTR_4g130900 45.000 80 43 1 281 360 344 422 6.94e-15 77.8
MS.gene66597.t1 MTR_1g070455 51.667 60 29 0 294 353 291 350 9.72e-15 76.3
MS.gene66597.t1 MTR_2g024380 41.558 77 45 0 291 367 246 322 1.93e-14 76.3
MS.gene66597.t1 MTR_4g007060 45.902 61 33 0 273 333 139 199 3.16e-14 72.8
MS.gene66597.t1 MTR_8g092140 51.667 60 28 1 294 353 158 216 4.85e-14 72.4
MS.gene66597.t1 MTR_1g078260 47.222 72 36 2 283 353 234 304 1.91e-13 73.2
MS.gene66597.t1 MTR_6g086555 45.000 80 42 2 283 361 193 271 1.93e-13 72.8
MS.gene66597.t1 MTR_4g127040 48.333 60 31 0 294 353 243 302 4.07e-13 70.9
MS.gene66597.t1 MTR_7g062220 52.632 57 26 1 297 353 125 180 3.62e-12 67.8
MS.gene66597.t1 MTR_3g108960 33.333 96 57 1 258 353 283 371 1.90e-11 66.6
MS.gene66597.t1 MTR_3g031220 39.506 81 43 3 280 360 186 260 2.82e-11 65.9
MS.gene66597.t1 MTR_0117s0040 43.333 60 34 0 294 353 72 131 7.06e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66597.t1 AT4G04450 41.004 478 246 10 52 497 30 503 1.94e-92 292
MS.gene66597.t1 AT4G04450 43.584 413 208 8 106 497 1 409 1.27e-87 277
MS.gene66597.t1 AT4G22070 47.414 348 168 5 89 421 76 423 4.47e-80 260
MS.gene66597.t1 AT4G22070 47.414 348 168 5 89 421 76 423 4.47e-80 260
MS.gene66597.t1 AT4G22070 47.414 348 168 5 89 421 76 423 4.47e-80 260
MS.gene66597.t1 AT4G22070 47.414 348 168 5 89 421 76 423 4.47e-80 260
MS.gene66597.t1 AT1G62300 39.630 487 222 16 52 500 89 541 1.14e-78 257
MS.gene66597.t1 AT4G01720 36.658 401 192 12 112 494 87 443 3.71e-48 174
MS.gene66597.t1 AT1G68150 36.782 261 114 5 127 377 97 316 7.69e-42 154
MS.gene66597.t1 AT1G69810 44.974 189 93 5 244 431 97 275 2.00e-36 138
MS.gene66597.t1 AT1G69810 47.590 166 80 4 267 431 174 333 2.82e-36 139
MS.gene66597.t1 AT1G18860 32.391 389 219 10 99 455 24 400 1.97e-35 139
MS.gene66597.t1 AT5G15130 34.363 259 127 8 279 498 210 464 5.28e-32 130
MS.gene66597.t1 AT1G80840 47.126 87 41 2 276 357 121 207 9.83e-23 99.4
MS.gene66597.t1 AT1G13960 51.899 79 37 1 278 356 391 468 6.46e-22 99.8
MS.gene66597.t1 AT1G13960 51.899 79 37 1 278 356 238 315 7.32e-22 97.8
MS.gene66597.t1 AT2G25000 44.944 89 49 0 271 359 100 188 7.64e-22 95.5
MS.gene66597.t1 AT2G25000 44.944 89 49 0 271 359 78 166 7.96e-22 94.7
MS.gene66597.t1 AT2G25000 44.944 89 49 0 271 359 78 166 7.96e-22 94.7
MS.gene66597.t1 AT2G25000 44.944 89 49 0 271 359 121 209 1.28e-21 95.1
MS.gene66597.t1 AT2G03340 48.276 87 44 1 272 358 391 476 1.82e-21 98.2
MS.gene66597.t1 AT5G41570 44.444 99 50 2 283 381 85 178 2.19e-21 92.0
MS.gene66597.t1 AT1G29860 44.681 94 47 2 281 374 121 209 2.80e-21 94.4
MS.gene66597.t1 AT1G64000 53.247 77 35 1 278 354 96 171 3.80e-21 92.0
MS.gene66597.t1 AT5G56270 52.500 80 37 1 279 358 470 548 4.60e-21 97.4
MS.gene66597.t1 AT4G31800 47.500 80 42 0 295 374 110 189 9.47e-21 92.0
MS.gene66597.t1 AT2G38470 50.617 81 39 1 278 358 344 423 9.55e-21 95.9
MS.gene66597.t1 AT4G31800 47.500 80 42 0 295 374 175 254 1.42e-20 93.2
MS.gene66597.t1 AT5G13080 53.425 73 33 1 283 355 54 125 2.16e-20 88.2
MS.gene66597.t1 AT2G30250 43.158 95 52 2 266 360 299 391 2.56e-20 93.6
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 188 266 2.60e-20 93.6
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 188 266 2.60e-20 93.6
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 188 266 2.60e-20 93.6
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 188 266 2.60e-20 93.6
MS.gene66597.t1 AT3G01080 45.349 86 46 1 271 356 319 403 2.77e-20 94.4
MS.gene66597.t1 AT3G01080 45.349 86 46 1 271 356 281 365 3.93e-20 93.2
MS.gene66597.t1 AT4G18170 39.316 117 60 2 283 389 159 274 4.02e-20 91.7
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 324 402 4.60e-20 94.0
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 292 370 5.14e-20 93.6
MS.gene66597.t1 AT4G26640 48.750 80 40 1 279 358 364 442 6.25e-20 93.6
MS.gene66597.t1 AT5G26170 51.389 72 34 1 282 353 99 169 7.82e-20 87.4
MS.gene66597.t1 AT5G64810 49.462 93 43 2 264 353 75 166 1.29e-19 87.4
MS.gene66597.t1 AT5G07100 48.148 81 41 1 276 356 121 200 2.30e-19 87.4
MS.gene66597.t1 AT5G07100 48.148 81 41 1 276 356 121 200 2.30e-19 87.4
MS.gene66597.t1 AT5G07100 48.148 81 41 1 276 356 121 200 2.30e-19 87.4
MS.gene66597.t1 AT5G07100 48.148 81 41 1 276 356 121 200 2.30e-19 87.4
MS.gene66597.t1 AT5G07100 45.882 85 45 1 276 360 214 297 3.06e-19 89.0
MS.gene66597.t1 AT5G46350 50.000 74 36 1 283 356 170 242 3.62e-19 89.4
MS.gene66597.t1 AT5G49520 45.000 80 43 1 281 360 206 284 4.33e-19 90.1
MS.gene66597.t1 AT2G04880 41.758 91 52 1 266 356 253 342 8.49e-19 89.7
MS.gene66597.t1 AT2G04880 33.333 129 82 4 292 420 107 231 5.93e-12 68.6
MS.gene66597.t1 AT2G04880 41.758 91 52 1 266 356 277 366 1.16e-18 89.4
MS.gene66597.t1 AT2G04880 47.059 68 34 2 292 359 107 172 8.15e-12 68.2
MS.gene66597.t1 AT3G01970 52.778 72 33 1 282 353 51 121 1.17e-18 83.2
MS.gene66597.t1 AT2G46130 50.000 72 35 1 283 354 17 87 2.87e-18 80.9
MS.gene66597.t1 AT4G26440 38.583 127 69 3 283 407 359 478 8.63e-18 87.0
MS.gene66597.t1 AT2G47260 44.578 83 45 1 281 363 159 240 1.27e-17 84.7
MS.gene66597.t1 AT5G52830 46.341 82 44 0 285 366 154 235 1.96e-17 84.3
MS.gene66597.t1 AT1G30650 47.297 74 39 0 290 363 211 284 5.17e-17 84.0
MS.gene66597.t1 AT2G34830 47.297 74 39 0 290 363 209 282 5.41e-17 84.0
MS.gene66597.t1 AT2G30590 55.224 67 29 1 294 359 311 377 6.44e-17 83.2
MS.gene66597.t1 AT2G34830 47.297 74 39 0 290 363 218 291 6.83e-17 83.6
MS.gene66597.t1 AT1G69310 45.333 75 40 1 279 353 130 203 7.51e-17 81.6
MS.gene66597.t1 AT1G69310 45.333 75 40 1 279 353 130 203 7.51e-17 81.6
MS.gene66597.t1 AT1G69310 45.333 75 40 1 279 353 130 203 7.51e-17 81.6
MS.gene66597.t1 AT4G30935 36.232 138 80 3 253 386 288 421 7.66e-17 83.6
MS.gene66597.t1 AT3G62340 50.000 74 36 1 283 356 105 177 8.36e-17 81.3
MS.gene66597.t1 AT1G29280 47.143 70 37 0 287 356 65 134 8.92e-17 80.9
MS.gene66597.t1 AT2G23320 37.705 122 63 2 235 355 190 299 1.01e-16 81.6
MS.gene66597.t1 AT1G55600 46.053 76 40 1 283 358 294 368 1.14e-16 83.2
MS.gene66597.t1 AT3G58710 45.205 73 40 0 287 359 62 134 1.29e-16 80.5
MS.gene66597.t1 AT3G58710 45.205 73 40 0 287 359 61 133 1.34e-16 80.5
MS.gene66597.t1 AT4G01250 46.667 75 40 0 292 366 124 198 1.85e-16 80.5
MS.gene66597.t1 AT4G23550 44.872 78 43 0 291 368 135 212 3.36e-16 80.1
MS.gene66597.t1 AT2G44745 43.038 79 44 1 275 353 124 201 6.93e-16 77.4
MS.gene66597.t1 AT4G24240 53.226 62 29 0 294 355 279 340 1.07e-15 79.3
MS.gene66597.t1 AT5G28650 53.333 60 28 0 294 353 260 319 2.00e-15 78.2
MS.gene66597.t1 AT4G39410 47.887 71 36 1 283 353 210 279 3.71e-15 77.0
MS.gene66597.t1 AT3G04670 53.333 60 28 0 294 353 260 319 4.26e-15 77.0
MS.gene66597.t1 AT5G45050 34.307 137 84 2 245 381 996 1126 4.49e-15 79.3
MS.gene66597.t1 AT5G45050 34.307 137 84 2 245 381 1135 1265 5.62e-15 79.0
MS.gene66597.t1 AT5G45050 34.307 137 84 2 245 381 1107 1237 5.99e-15 79.0
MS.gene66597.t1 AT4G31550 53.333 60 28 0 294 353 243 302 8.20e-15 76.3
MS.gene66597.t1 AT4G31550 53.333 60 28 0 294 353 244 303 8.44e-15 76.3
MS.gene66597.t1 AT2G24570 51.667 60 29 0 294 353 241 300 4.24e-14 73.9
MS.gene66597.t1 AT2G46130 47.222 72 33 2 283 354 17 83 6.10e-14 68.6
MS.gene66597.t1 AT2G37260 50.769 65 31 1 291 355 262 325 2.00e-13 72.0
MS.gene66597.t1 AT2G37260 50.769 65 31 1 291 355 264 327 2.11e-13 72.0
MS.gene66597.t1 AT2G21900 31.250 112 71 2 248 359 66 171 2.59e-13 69.3
MS.gene66597.t1 AT2G37260 50.769 65 31 1 291 355 344 407 2.86e-13 72.4
MS.gene66597.t1 AT4G31800 45.312 64 30 1 275 333 150 213 8.41e-11 62.8

Find 108 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGAGTTTGATTTCTTTA+AGG 0.143956 4.3:+49910458 MS.gene66597:CDS
GATAAAACTGCAGGAAAATT+TGG 0.153966 4.3:-49915245 None:intergenic
GAAGTTTATGATGGAAAATT+TGG 0.188184 4.3:+49912202 MS.gene66597:CDS
GTTCTCTTGTCTTCTGAATT+AGG 0.194946 4.3:-49910807 None:intergenic
TTGACTGCCCGAGCAATATT+TGG 0.235969 4.3:-49915203 None:intergenic
GCTACTGATAATAATAATAA+TGG 0.247023 4.3:+49915320 MS.gene66597:CDS
AACTCAAGGTTAATATTAAC+TGG 0.250989 4.3:-49910321 None:intergenic
GCAGAAGTCTGACGGATTAA+AGG 0.258182 4.3:-49915098 None:intergenic
CAGAAGACAAGAGAACTAAA+AGG 0.319856 4.3:+49910814 MS.gene66597:CDS
AATAAGGTTATGGAAGTTAA+AGG 0.322766 4.3:+49912175 MS.gene66597:CDS
ACTGGTGCCAAGGAAAATTA+TGG 0.327217 4.3:+49912135 MS.gene66597:CDS
TCCCTTTCCTAGTCAATATT+AGG 0.336762 4.3:+49910388 MS.gene66597:CDS
TCAAGTGTAATGGTTGGAAA+TGG 0.343703 4.3:-49915023 None:intergenic
AAAGGAGTTTGAAACTGATC+TGG 0.348918 4.3:-49915080 None:intergenic
CTTGTTTCATTAGATGAGAT+TGG 0.354120 4.3:-49910435 None:intergenic
AACTGATCTGGGTTCCTTTG+TGG 0.354361 4.3:-49915068 None:intergenic
TGCTGGGTTGGCTACTAATA+AGG 0.363458 4.3:+49912279 MS.gene66597:CDS
AAAAGGAAATTTGTTGATGC+TGG 0.369100 4.3:+49912262 MS.gene66597:CDS
CTACTAGTATTGGTAGTAAC+AGG 0.370957 4.3:-49910753 None:intergenic
GATGCAAGATTGTAAGGTTA+AGG 0.371759 4.3:+49912045 MS.gene66597:CDS
GCCATTTCTTTGGCTGCTGC+AGG 0.373631 4.3:-49914864 None:intergenic
TTGTGTGCCTTCAAAACTAT+TGG 0.376304 4.3:+49915175 MS.gene66597:CDS
TCTTGGATCAGCTACTAATA+AGG 0.377634 4.3:+49912159 MS.gene66597:CDS
TAGTGATACATCATCTTTGT+TGG 0.382295 4.3:+49910542 MS.gene66597:CDS
CTGCAACGATAATACGCTTT+AGG 0.384404 4.3:-49912770 None:intergenic
CCAAGGAAAATTATGGATCT+TGG 0.393916 4.3:+49912142 MS.gene66597:CDS
TCTTTGGCTGCTGCAGGTAA+AGG 0.394516 4.3:-49914858 None:intergenic
CTATGAATATGATCCTTGTC+AGG 0.405242 4.3:-49910522 None:intergenic
TAACATCCTCATTCTTACTT+AGG 0.406214 4.3:-49912516 None:intergenic
TTTCAGATGGCTATTCTTCA+AGG 0.408471 4.3:+49911923 MS.gene66597:intron
GGATGTCAATGGAGAAAGTA+TGG 0.409848 4.3:+49912719 MS.gene66597:CDS
CAAGTGTAATGGTTGGAAAT+GGG 0.411437 4.3:-49915022 None:intergenic
CTACTGATAATAATAATAAT+GGG 0.419654 4.3:+49915321 MS.gene66597:CDS
CTTTGGCTGCTGCAGGTAAA+GGG 0.420375 4.3:-49914857 None:intergenic
ATCAGCTACTAATAAGGTTA+TGG 0.421535 4.3:+49912165 MS.gene66597:CDS
TAGATGAGATTGGAGAGGTT+TGG 0.425712 4.3:-49910425 None:intergenic
GCTACTCTTACTTCCATGAT+TGG 0.436300 4.3:+49915269 MS.gene66597:CDS
GGGTTCCTTTGTGGAGTAGT+TGG 0.444283 4.3:-49915059 None:intergenic
CGATAATACGCTTTAGGACA+TGG 0.452989 4.3:-49912764 None:intergenic
GAAAGTGATGCAAGATTGTA+AGG 0.455429 4.3:+49912039 MS.gene66597:CDS
ACCTGCAGCAGCCAAAGAAA+TGG 0.461509 4.3:+49914863 MS.gene66597:CDS
GTAGCAGTAGTAGTGTTGTT+TGG 0.472574 4.3:-49915302 None:intergenic
TGTAGCATCCATGGTTTCGT+TGG 0.474356 4.3:-49910355 None:intergenic
CTCTGCCTCTGTCCCTGACA+AGG 0.474595 4.3:+49910509 MS.gene66597:CDS
ACAGGTAGCAACAACAAAGA+TGG 0.479242 4.3:+49915380 MS.gene66597:CDS
GACCTAATATTGACTAGGAA+AGG 0.479292 4.3:-49910390 None:intergenic
AAAGGACAAGAAGTTTATGA+TGG 0.480807 4.3:+49912193 MS.gene66597:CDS
TGGTTGCTCAGTCCGAAAAC+AGG 0.487721 4.3:+49912802 MS.gene66597:CDS
AATGGGAACAATGTCGCAAA+AGG 0.491408 4.3:+49915338 MS.gene66597:CDS
ACATCAACATCAAGCAATGA+TGG 0.491559 4.3:+49914924 MS.gene66597:CDS
GTAGCATCCATGGTTTCGTT+GGG 0.493395 4.3:-49910354 None:intergenic
GGCAGTTCCAAATATTGCTC+GGG 0.494464 4.3:+49915196 MS.gene66597:CDS
AGCTGAGAATGGTGGAGTAC+TGG 0.504825 4.3:+49912117 MS.gene66597:CDS
AGAAGACAAGAGAACTAAAA+GGG 0.511884 4.3:+49910815 MS.gene66597:CDS
TGGCAGTTCCAAATATTGCT+CGG 0.513777 4.3:+49915195 MS.gene66597:CDS
AAGGAGTTTGAAACTGATCT+GGG 0.518182 4.3:-49915079 None:intergenic
TAGTAGTGATCAATCTATGA+TGG 0.520634 4.3:+49910770 MS.gene66597:CDS
TGGCTGAGTATCACCAATCA+TGG 0.521571 4.3:-49915282 None:intergenic
ATTAACTGGATTTGAATCCA+TGG 0.524287 4.3:-49910307 None:intergenic
TGGGACTAAGTTTCAACTCA+AGG 0.529586 4.3:-49910335 None:intergenic
AGGAATTTGCAGAAGTCTGA+CGG 0.529766 4.3:-49915106 None:intergenic
ATGGTGGAGAATTAGTGAAA+AGG 0.530673 4.3:+49912245 MS.gene66597:CDS
GAAATTTGTTGATGCTGGGT+TGG 0.532637 4.3:+49912267 MS.gene66597:CDS
ACCTAATATTGACTAGGAAA+GGG 0.537487 4.3:-49910389 None:intergenic
GTTGTCATCACAACATATGA+AGG 0.537947 4.3:+49914822 MS.gene66597:CDS
AGTATTGGTAGTAACAGGAT+TGG 0.539477 4.3:-49910748 None:intergenic
AAGCTTCGAGGAGGCTTCGA+AGG 0.539694 4.3:+49912486 MS.gene66597:CDS
AGTACTATGTGTAGCATCCA+TGG 0.540325 4.3:-49910364 None:intergenic
AGGCAGAGACAACTTCTTGA+TGG 0.540615 4.3:-49910494 None:intergenic
AGATTACAATTACATGCGAA+TGG 0.540869 4.3:+49912009 MS.gene66597:CDS
TTGAGTATAATCAAGTGTAA+TGG 0.545850 4.3:-49915033 None:intergenic
AAAGGAAATTTGTTGATGCT+GGG 0.547546 4.3:+49912263 MS.gene66597:CDS
AGATTGATCACTACTAGTAT+TGG 0.549551 4.3:-49910763 None:intergenic
TGTAAGGTTAAGGAAGTCAA+AGG 0.554949 4.3:+49912055 MS.gene66597:CDS
AAGCATCTTTGCAGCTGCAG+AGG 0.555776 4.3:-49914895 None:intergenic
GTTAGTCCTAAGTAAGAATG+AGG 0.558419 4.3:+49912510 MS.gene66597:CDS
GTATTGGTAGTAACAGGATT+GGG 0.564404 4.3:-49910747 None:intergenic
TTATTGTGTTAGATCACTGA+TGG 0.564668 4.3:+49912698 MS.gene66597:intron
AGAGTAGCTGATAAAACTGC+AGG 0.568439 4.3:-49915254 None:intergenic
AAAATTTGGATTAGCAGCAA+TGG 0.568779 4.3:-49915231 None:intergenic
GTCGCAAAAGGTAATAACAA+TGG 0.570392 4.3:+49915350 MS.gene66597:CDS
TTGAGAGATCAGAGAAGCTG+AGG 0.571353 4.3:-49915126 None:intergenic
GTATAATCAAGTGTAATGGT+TGG 0.576480 4.3:-49915029 None:intergenic
AATAACAATGGAAATATCAC+AGG 0.579865 4.3:+49915362 MS.gene66597:CDS
CAGGTAGCAACAACAAAGAT+GGG 0.581390 4.3:+49915381 MS.gene66597:CDS
CAATACTTGAAGAACAAGGA+AGG 0.589537 4.3:-49914980 None:intergenic
AAGTGTAATGGTTGGAAATG+GGG 0.590397 4.3:-49915021 None:intergenic
ATGATCCTTGTCAGGGACAG+AGG 0.594495 4.3:-49910514 None:intergenic
TTCAAACTTAACAGGTACAA+AGG 0.596299 4.3:+49914781 MS.gene66597:intron
ATCAGCGTTGAAAAGCTTCG+AGG 0.603132 4.3:+49912474 MS.gene66597:CDS
AATACTTGAAGAACAAGGAA+GGG 0.605302 4.3:-49914979 None:intergenic
TAGCAACAACAAAGATGGGA+AGG 0.605972 4.3:+49915385 MS.gene66597:CDS
GATAATACGCTTTAGGACAT+GGG 0.608155 4.3:-49912763 None:intergenic
ATGGTGGAGTACTGGTGCCA+AGG 0.608936 4.3:+49912125 MS.gene66597:CDS
ACTTAGTCCCAACGAAACCA+TGG 0.609594 4.3:+49910347 MS.gene66597:CDS
TATCGTTGCAGCATGGCCCG+TGG 0.614367 4.3:+49912782 MS.gene66597:CDS
TTCATTAGATGAGATTGGAG+AGG 0.619862 4.3:-49910430 None:intergenic
TGGAGGACCTAATATTGACT+AGG 0.620153 4.3:-49910395 None:intergenic
AGATCACTGATGGATGTCAA+TGG 0.621939 4.3:+49912708 MS.gene66597:intron
ATACTTGAAGAACAAGGAAG+GGG 0.623529 4.3:-49914978 None:intergenic
TGGCTGCTGCAGGTAAAGGG+TGG 0.624702 4.3:-49914854 None:intergenic
TATGAATATGATCCTTGTCA+GGG 0.629171 4.3:-49910521 None:intergenic
AGCGTATTATCGTTGCAGCA+TGG 0.651842 4.3:+49912775 MS.gene66597:CDS
TGTTAATGTTGAAAATGTTG+AGG 0.658284 4.3:+49912534 MS.gene66597:CDS
AATCTCCAACTACTCCACAA+AGG 0.678231 4.3:+49915054 MS.gene66597:CDS
AGCGTTGAAAAGCTTCGAGG+AGG 0.678382 4.3:+49912477 MS.gene66597:CDS
AGACAAGAGAACTAAAAGGG+AGG 0.688005 4.3:+49910818 MS.gene66597:CDS
GTTGCAATACTTGAAGAACA+AGG 0.694121 4.3:-49914984 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGTAGAAAAAAAATAA+TGG - chr4.3:49910605-49910624 None:intergenic 10.0%
!! ATAAGTAGAAAAAAAATAAT+GGG - chr4.3:49910604-49910623 None:intergenic 10.0%
!! TATAGTTGAAAAAATTAAAA+TGG - chr4.3:49911046-49911065 None:intergenic 10.0%
!! TGAATAAATAAATTCAATTT+AGG - chr4.3:49911506-49911525 None:intergenic 10.0%
!!! ATGCATATTTAAATTTTTAA+TGG - chr4.3:49914588-49914607 None:intergenic 10.0%
!! AAATATCATCACATAAAAAA+TGG - chr4.3:49911887-49911906 None:intergenic 15.0%
!! AAATTAGTTATGTAATTAGA+CGG + chr4.3:49913666-49913685 MS.gene66597:intron 15.0%
!! AATAATCGAATTCAATTTAA+TGG + chr4.3:49911806-49911825 MS.gene66597:intron 15.0%
!! ATTATCTATGGTTAAAATAA+AGG - chr4.3:49911221-49911240 None:intergenic 15.0%
!! CAAAACATAATTATTATCTA+TGG - chr4.3:49911233-49911252 None:intergenic 15.0%
!! CTACTGATAATAATAATAAT+GGG + chr4.3:49915321-49915340 MS.gene66597:CDS 15.0%
!! TAAAAAATGAAACCAAATAA+AGG - chr4.3:49911457-49911476 None:intergenic 15.0%
!! TGTACTATACTTATAAATAT+AGG - chr4.3:49911157-49911176 None:intergenic 15.0%
!! TTAACAACCTTAATAAAAAA+GGG - chr4.3:49913617-49913636 None:intergenic 15.0%
!! TTATCTATGGTTAAAATAAA+GGG - chr4.3:49911220-49911239 None:intergenic 15.0%
!! TTTAACAACCTTAATAAAAA+AGG - chr4.3:49913618-49913637 None:intergenic 15.0%
!!! AACAAATCTATTTTTGAAAT+AGG - chr4.3:49913525-49913544 None:intergenic 15.0%
!!! ATATATATAATTTTCTTGGT+TGG + chr4.3:49911095-49911114 MS.gene66597:intron 15.0%
!!! ATTTTTTTCTTTCCTTTATT+TGG + chr4.3:49911442-49911461 MS.gene66597:intron 15.0%
!!! TAGAATATTTTTATGTGATT+TGG + chr4.3:49911667-49911686 MS.gene66597:intron 15.0%
!! AAAAAATTAAAATGGAAGTG+AGG - chr4.3:49911038-49911057 None:intergenic 20.0%
!! AAAAATTAAAATGGAAGTGA+GGG - chr4.3:49911037-49911056 None:intergenic 20.0%
!! ATATTTGTTTCACAAATAAG+AGG - chr4.3:49911695-49911714 None:intergenic 20.0%
!! CAAAAGGAAACTATATATAT+CGG - chr4.3:49913411-49913430 None:intergenic 20.0%
!! GCTACTGATAATAATAATAA+TGG + chr4.3:49915320-49915339 MS.gene66597:CDS 20.0%
!! TAGTTAAAATACTAATGAAG+TGG + chr4.3:49914725-49914744 MS.gene66597:intron 20.0%
!! TATCTATGGTTAAAATAAAG+GGG - chr4.3:49911219-49911238 None:intergenic 20.0%
!!! AATAATGGGATATTGAATTA+TGG - chr4.3:49910590-49910609 None:intergenic 20.0%
!!! AATAGAGTTTGATTTCTTTA+AGG + chr4.3:49910458-49910477 MS.gene66597:CDS 20.0%
!!! ATTACTGAAAATTGCAATTT+TGG - chr4.3:49913132-49913151 None:intergenic 20.0%
!!! ATTTTTTTCCTTCCATTTAT+TGG + chr4.3:49910890-49910909 MS.gene66597:intron 20.0%
!!! GAAGTATTATGGTTTTATTA+TGG + chr4.3:49914161-49914180 MS.gene66597:intron 20.0%
!!! TTATGATCATCTTGATAATT+TGG + chr4.3:49910692-49910711 MS.gene66597:intron 20.0%
!!! TTTAAATATGCATTGATGTT+TGG + chr4.3:49914595-49914614 MS.gene66597:intron 20.0%
!!! TTTTTTTTTGGTACAAAAGA+GGG + chr4.3:49912841-49912860 MS.gene66597:intron 20.0%
!!! TTTTTTTTTTGGTACAAAAG+AGG + chr4.3:49912840-49912859 MS.gene66597:intron 20.0%
! AAAAAGAGAATTGAGAATGA+TGG + chr4.3:49912334-49912353 MS.gene66597:intron 25.0%
! AAATAAAAGTTTGGATACGA+TGG + chr4.3:49913847-49913866 MS.gene66597:intron 25.0%
! AACCTTAATAAAAAAGGGAT+TGG - chr4.3:49913612-49913631 None:intergenic 25.0%
! AACTCAAGGTTAATATTAAC+TGG - chr4.3:49910324-49910343 None:intergenic 25.0%
! AAGATAATGATTAAAGACCA+AGG - chr4.3:49914352-49914371 None:intergenic 25.0%
! AATAAAAGTTTGGATACGAT+GGG + chr4.3:49913848-49913867 MS.gene66597:intron 25.0%
! AATAACAATGGAAATATCAC+AGG + chr4.3:49915362-49915381 MS.gene66597:CDS 25.0%
! AATAAGGTTATGGAAGTTAA+AGG + chr4.3:49912175-49912194 MS.gene66597:CDS 25.0%
! CCTAACTAATCTTTACTTAT+AGG - chr4.3:49912454-49912473 None:intergenic 25.0%
! TAAGTTCATTAAATTCAGCT+AGG - chr4.3:49910858-49910877 None:intergenic 25.0%
! TAGAACACTATTAACATGAT+GGG + chr4.3:49911759-49911778 MS.gene66597:intron 25.0%
! TGTTAATGTTGAAAATGTTG+AGG + chr4.3:49912534-49912553 MS.gene66597:CDS 25.0%
! TTAAAATAAAGGGGAGAAAT+GGG - chr4.3:49911210-49911229 None:intergenic 25.0%
! TTAGAACACTATTAACATGA+TGG + chr4.3:49911758-49911777 MS.gene66597:intron 25.0%
! TTGAGTATAATCAAGTGTAA+TGG - chr4.3:49915036-49915055 None:intergenic 25.0%
!! AAAAGAAAGTTACCTGTTTT+CGG - chr4.3:49912817-49912836 None:intergenic 25.0%
!! AAAGGAAAAGAAGTTTTTGA+TGG + chr4.3:49912073-49912092 MS.gene66597:CDS 25.0%
!! ATCGTATCCAAACTTTTATT+TGG - chr4.3:49913848-49913867 None:intergenic 25.0%
!! CATCACATAAAAAATGGATT+TGG - chr4.3:49911881-49911900 None:intergenic 25.0%
!! CCTATAAGTAAAGATTAGTT+AGG + chr4.3:49912451-49912470 MS.gene66597:intron 25.0%
!! GAAGTTTATGATGGAAAATT+TGG + chr4.3:49912202-49912221 MS.gene66597:CDS 25.0%
!! TATATAGTTTCCTTTTGATG+CGG + chr4.3:49913414-49913433 MS.gene66597:intron 25.0%
!!! AATTTTGATTGGTTCTGATT+AGG - chr4.3:49915155-49915174 None:intergenic 25.0%
!!! ACACTTTAAGATACTTACAA+TGG - chr4.3:49912608-49912627 None:intergenic 25.0%
!!! ATTTTGATCCAATAAATGGA+AGG - chr4.3:49910901-49910920 None:intergenic 25.0%
!!! CTCAATTTTGATCCAATAAA+TGG - chr4.3:49910905-49910924 None:intergenic 25.0%
!!! CTTTTGTTTGATGATATTTC+CGG - chr4.3:49912928-49912947 None:intergenic 25.0%
!!! TATAATTTTCTTGGTTGGTT+TGG + chr4.3:49911100-49911119 MS.gene66597:intron 25.0%
!!! TATCCAAACTTTTATTTGGT+TGG - chr4.3:49913844-49913863 None:intergenic 25.0%
!!! TATTTTTTTCTTCAACAGCT+TGG + chr4.3:49910723-49910742 MS.gene66597:intron 25.0%
!!! TTTTGTTTGATGATATTTCC+GGG - chr4.3:49912927-49912946 None:intergenic 25.0%
AAAAAAATAGCTGAGAATGG+TGG + chr4.3:49912109-49912128 MS.gene66597:CDS 30.0%
AAAAAGAGAATGAAGAATGG+TGG + chr4.3:49912229-49912248 MS.gene66597:CDS 30.0%
AAAGGACAAGAAGTTTATGA+TGG + chr4.3:49912193-49912212 MS.gene66597:CDS 30.0%
AATACTTGAAGAACAAGGAA+GGG - chr4.3:49914982-49915001 None:intergenic 30.0%
AATTTGATATACATTGCACG+AGG + chr4.3:49914435-49914454 MS.gene66597:intron 30.0%
AGAACACTATTAACATGATG+GGG + chr4.3:49911760-49911779 MS.gene66597:intron 30.0%
AGAAGACAAGAGAACTAAAA+GGG + chr4.3:49910815-49910834 MS.gene66597:CDS 30.0%
AGATTACAATTACATGCGAA+TGG + chr4.3:49912009-49912028 MS.gene66597:CDS 30.0%
AGATTGATCACTACTAGTAT+TGG - chr4.3:49910766-49910785 None:intergenic 30.0%
AGGAAACTATATATATCGGT+TGG - chr4.3:49913407-49913426 None:intergenic 30.0%
ATAAAAGTTTGGATACGATG+GGG + chr4.3:49913849-49913868 MS.gene66597:intron 30.0%
ATCAGCTACTAATAAGGTTA+TGG + chr4.3:49912165-49912184 MS.gene66597:CDS 30.0%
ATGTCAAAATTACCCATACT+TGG - chr4.3:49913053-49913072 None:intergenic 30.0%
ATTCACGTAGACAACAATAT+GGG + chr4.3:49911005-49911024 MS.gene66597:intron 30.0%
CAACAAACTCAAATCCAAAA+TGG + chr4.3:49914685-49914704 MS.gene66597:intron 30.0%
CACTATAGTTCAAACTTAAC+AGG + chr4.3:49914773-49914792 MS.gene66597:intron 30.0%
CATCCAATGATATGTTATCA+CGG + chr4.3:49911304-49911323 MS.gene66597:intron 30.0%
CATGTTGGTATTTATGGATT+TGG - chr4.3:49913551-49913570 None:intergenic 30.0%
CTTAAGTCTTCTTTCTCTTT+GGG - chr4.3:49912873-49912892 None:intergenic 30.0%
CTTGTTTCATTAGATGAGAT+TGG - chr4.3:49910438-49910457 None:intergenic 30.0%
GAGAAAAAAATAGCTGAGAA+TGG + chr4.3:49912106-49912125 MS.gene66597:CDS 30.0%
GAGAAAAAGAGAATGAAGAA+TGG + chr4.3:49912226-49912245 MS.gene66597:CDS 30.0%
GATAAAACTGCAGGAAAATT+TGG - chr4.3:49915248-49915267 None:intergenic 30.0%
GGATACTACTATTTCAGTTA+GGG - chr4.3:49914111-49914130 None:intergenic 30.0%
GTATAATCAAGTGTAATGGT+TGG - chr4.3:49915032-49915051 None:intergenic 30.0%
GTTAAAATAAAGGGGAGAAA+TGG - chr4.3:49911211-49911230 None:intergenic 30.0%
TAACATCCTCATTCTTACTT+AGG - chr4.3:49912519-49912538 None:intergenic 30.0%
TAATGCGAAAGCAATCATTA+AGG - chr4.3:49914203-49914222 None:intergenic 30.0%
TAGTAGTGATCAATCTATGA+TGG + chr4.3:49910770-49910789 MS.gene66597:CDS 30.0%
TAGTGATACATCATCTTTGT+TGG + chr4.3:49910542-49910561 MS.gene66597:CDS 30.0%
TATGAATATGATCCTTGTCA+GGG - chr4.3:49910524-49910543 None:intergenic 30.0%
TCAGCAAAAACAAAATGCAT+TGG - chr4.3:49911787-49911806 None:intergenic 30.0%
TCTTAAGTCTTCTTTCTCTT+TGG - chr4.3:49912874-49912893 None:intergenic 30.0%
TGACAACATGTTGGTATTTA+TGG - chr4.3:49913557-49913576 None:intergenic 30.0%
TGGATACTACTATTTCAGTT+AGG - chr4.3:49914112-49914131 None:intergenic 30.0%
TTACCGTGATAACATATCAT+TGG - chr4.3:49911310-49911329 None:intergenic 30.0%
TTATTGTGTTAGATCACTGA+TGG + chr4.3:49912698-49912717 MS.gene66597:intron 30.0%
TTCAAACTTAACAGGTACAA+AGG + chr4.3:49914781-49914800 MS.gene66597:intron 30.0%
TTCTGCTAATCAATCTTATG+TGG - chr4.3:49914132-49914151 None:intergenic 30.0%
! AACTTTTGAATTACCAGTGT+AGG + chr4.3:49913480-49913499 MS.gene66597:intron 30.0%
! ACCTAATATTGACTAGGAAA+GGG - chr4.3:49910392-49910411 None:intergenic 30.0%
! ACTGAAAATTGCAATTTTGG+TGG - chr4.3:49913129-49913148 None:intergenic 30.0%
! CATGTTTCTATGCTAGAAAA+TGG + chr4.3:49914506-49914525 MS.gene66597:intron 30.0%
! GGAAACTATATATATCGGTT+GGG - chr4.3:49913406-49913425 None:intergenic 30.0%
! TATAGGTTTTCTCATTGATG+AGG - chr4.3:49912437-49912456 None:intergenic 30.0%
! TCTATGCTAGAAAATGGATT+TGG + chr4.3:49914512-49914531 MS.gene66597:intron 30.0%
! TTCATTGAACTGTTTTCAGA+TGG + chr4.3:49911910-49911929 MS.gene66597:intron 30.0%
! TTTGTTTGATGATATTTCCG+GGG - chr4.3:49912926-49912945 None:intergenic 30.0%
!! AAAAGGAAATTTGTTGATGC+TGG + chr4.3:49912262-49912281 MS.gene66597:CDS 30.0%
!! AAAATTTGGATTAGCAGCAA+TGG - chr4.3:49915234-49915253 None:intergenic 30.0%
!! AAAGGAAATTTGTTGATGCT+GGG + chr4.3:49912263-49912282 MS.gene66597:CDS 30.0%
!! AAGAGAAGAGAGAAGTATTA+TGG + chr4.3:49914150-49914169 MS.gene66597:intron 30.0%
!! AAGGCACACAAAATTTTGAT+TGG - chr4.3:49915166-49915185 None:intergenic 30.0%
!! AAGGTGAAAGAAGTGTTTAA+TGG + chr4.3:49912298-49912317 MS.gene66597:intron 30.0%
!! TGTCTATATTTGATAATGCC+TGG + chr4.3:49910949-49910968 MS.gene66597:intron 30.0%
!!! ACATGCATATTTTAAGACCT+TGG + chr4.3:49914332-49914351 MS.gene66597:intron 30.0%
!!! CTCCAATCCCTTTTTTATTA+AGG + chr4.3:49913607-49913626 MS.gene66597:intron 30.0%
!!! CTGGGATCTAAATTTTTTGA+TGG - chr4.3:49914066-49914085 None:intergenic 30.0%
!!! GTATTTTAACTAACCTAGCT+AGG - chr4.3:49914717-49914736 None:intergenic 30.0%
AAAGGCTACTTCAAGAAGAT+TGG - chr4.3:49913273-49913292 None:intergenic 35.0%
AAGCACTTTGAACAGTAAAC+TGG + chr4.3:49913940-49913959 MS.gene66597:intron 35.0%
AAGTGTAATGGTTGGAAATG+GGG - chr4.3:49915024-49915043 None:intergenic 35.0%
ACATCAACATCAAGCAATGA+TGG + chr4.3:49914924-49914943 MS.gene66597:CDS 35.0%
ACTGACATACACATAAACAC+TGG - chr4.3:49911642-49911661 None:intergenic 35.0%
ATACTTGAAGAACAAGGAAG+GGG - chr4.3:49914981-49915000 None:intergenic 35.0%
ATCTGGTTAACAATGTTCAC+AGG + chr4.3:49914032-49914051 MS.gene66597:intron 35.0%
ATGGTCGTTGTATTGAAGAT+TGG - chr4.3:49914626-49914645 None:intergenic 35.0%
CAAGTGTAATGGTTGGAAAT+GGG - chr4.3:49915025-49915044 None:intergenic 35.0%
CAATACTTGAAGAACAAGGA+AGG - chr4.3:49914983-49915002 None:intergenic 35.0%
CAGAAGACAAGAGAACTAAA+AGG + chr4.3:49910814-49910833 MS.gene66597:CDS 35.0%
CCAAGGAAAATTATGGATCT+TGG + chr4.3:49912142-49912161 MS.gene66597:CDS 35.0%
CCGGAAAATTTGAGTAGTAA+GGG - chr4.3:49911544-49911563 None:intergenic 35.0%
CTACTTTCATGACAACATGT+TGG - chr4.3:49913566-49913585 None:intergenic 35.0%
CTATGAATATGATCCTTGTC+AGG - chr4.3:49910525-49910544 None:intergenic 35.0%
GAAAGTGATGCAAGATTGTA+AGG + chr4.3:49912039-49912058 MS.gene66597:CDS 35.0%
GAAATTAAACGAACGTTCCT+AGG + chr4.3:49912892-49912911 MS.gene66597:intron 35.0%
GAATACCACTCATCTTATAG+TGG - chr4.3:49913184-49913203 None:intergenic 35.0%
GATGCAAGATTGTAAGGTTA+AGG + chr4.3:49912045-49912064 MS.gene66597:CDS 35.0%
GATTCACGTAGACAACAATA+TGG + chr4.3:49911004-49911023 MS.gene66597:intron 35.0%
GTCGCAAAAGGTAATAACAA+TGG + chr4.3:49915350-49915369 MS.gene66597:CDS 35.0%
GTTAGTCCTAAGTAAGAATG+AGG + chr4.3:49912510-49912529 MS.gene66597:CDS 35.0%
GTTCTCTTGTCTTCTGAATT+AGG - chr4.3:49910810-49910829 None:intergenic 35.0%
GTTGCAATACTTGAAGAACA+AGG - chr4.3:49914987-49915006 None:intergenic 35.0%
GTTGTCATCACAACATATGA+AGG + chr4.3:49914822-49914841 MS.gene66597:CDS 35.0%
GTTTCTGTCCGTATCATATA+GGG - chr4.3:49911579-49911598 None:intergenic 35.0%
TCAAGTGTAATGGTTGGAAA+TGG - chr4.3:49915026-49915045 None:intergenic 35.0%
TCCCTTTCCTAGTCAATATT+AGG + chr4.3:49910388-49910407 MS.gene66597:CDS 35.0%
TCTTAATACTTCTGGTGACT+GGG - chr4.3:49914084-49914103 None:intergenic 35.0%
TCTTGGATCAGCTACTAATA+AGG + chr4.3:49912159-49912178 MS.gene66597:CDS 35.0%
TGCTAATTTCAGCATTTCGA+TGG - chr4.3:49913001-49913020 None:intergenic 35.0%
TGGGTTAAGCTTAATTGTGA+TGG - chr4.3:49913366-49913385 None:intergenic 35.0%
TGTAAGGTTAAGGAAGTCAA+AGG + chr4.3:49912055-49912074 MS.gene66597:CDS 35.0%
TTCATTAGATGAGATTGGAG+AGG - chr4.3:49910433-49910452 None:intergenic 35.0%
TTGATGTAGCAACACATCAT+TGG + chr4.3:49911370-49911389 MS.gene66597:intron 35.0%
TTGGAGATAATCCTACTACT+TGG - chr4.3:49913593-49913612 None:intergenic 35.0%
TTGTGTGCCTTCAAAACTAT+TGG + chr4.3:49915175-49915194 MS.gene66597:CDS 35.0%
TTTAATGGTCATTGACGTAC+TGG - chr4.3:49914573-49914592 None:intergenic 35.0%
TTTCAGATGGCTATTCTTCA+AGG + chr4.3:49911923-49911942 MS.gene66597:intron 35.0%
TTTCTGTCCGTATCATATAG+GGG - chr4.3:49911578-49911597 None:intergenic 35.0%
! AAAGGAGTTTGAAACTGATC+TGG - chr4.3:49915083-49915102 None:intergenic 35.0%
! AAGGAGTTTGAAACTGATCT+GGG - chr4.3:49915082-49915101 None:intergenic 35.0%
! AATTGAGAATGATGGAGAGT+TGG + chr4.3:49912342-49912361 MS.gene66597:intron 35.0%
! ATGCTTTTCATGCTGAAATG+TGG - chr4.3:49913242-49913261 None:intergenic 35.0%
! ATGGTGGAGAATTAGTGAAA+AGG + chr4.3:49912245-49912264 MS.gene66597:CDS 35.0%
! ATTTCTTCTCTGTTGATTGC+AGG - chr4.3:49913650-49913669 None:intergenic 35.0%
! CCAAGATCCATAATTTTCCT+TGG - chr4.3:49912145-49912164 None:intergenic 35.0%
! CCCTTACTACTCAAATTTTC+CGG + chr4.3:49911541-49911560 MS.gene66597:intron 35.0%
! CCTTACTACTCAAATTTTCC+GGG + chr4.3:49911542-49911561 MS.gene66597:intron 35.0%
! GACCTAATATTGACTAGGAA+AGG - chr4.3:49910393-49910412 None:intergenic 35.0%
! GTATTGGTAGTAACAGGATT+GGG - chr4.3:49910750-49910769 None:intergenic 35.0%
! TAAATGCATGGATTGCAGAA+TGG - chr4.3:49914545-49914564 None:intergenic 35.0%
! TGCTTTTCATGCTGAAATGT+GGG - chr4.3:49913241-49913260 None:intergenic 35.0%
! TGTTTCTGTCCGTATCATAT+AGG - chr4.3:49911580-49911599 None:intergenic 35.0%
! TTCTCTAGATTTTCATGTCC+TGG - chr4.3:49912977-49912996 None:intergenic 35.0%
! TTTCTTCTCTGTTGATTGCA+GGG - chr4.3:49913649-49913668 None:intergenic 35.0%
!! ACGTTTTATTCGCATGTGAT+GGG + chr4.3:49911853-49911872 MS.gene66597:intron 35.0%
!! AGAAACATGAGCTTTGAAAG+TGG - chr4.3:49914495-49914514 None:intergenic 35.0%
!! AGTATTGGTAGTAACAGGAT+TGG - chr4.3:49910751-49910770 None:intergenic 35.0%
!! CTACTAGTATTGGTAGTAAC+AGG - chr4.3:49910756-49910775 None:intergenic 35.0%
!! GATAATACGCTTTAGGACAT+GGG - chr4.3:49912766-49912785 None:intergenic 35.0%
!!! GACAACTTTTGAGTTTGAGT+TGG - chr4.3:49913077-49913096 None:intergenic 35.0%
!!! GGTTGTTTTTGCCATTTCTT+TGG - chr4.3:49914877-49914896 None:intergenic 35.0%
AAAATCAGAAGGGGTTGGAA+GGG + chr4.3:49914004-49914023 MS.gene66597:intron 40.0%
AAAATGGTAGCTACCTAGCT+AGG + chr4.3:49914701-49914720 MS.gene66597:intron 40.0%
AAAGTAGTCTGCCAAGTAGT+AGG + chr4.3:49913579-49913598 MS.gene66597:intron 40.0%
AAGACCTTATGGAACTGGAA+GGG - chr4.3:49913876-49913895 None:intergenic 40.0%
AATAGAAGACAGTACGAAGC+TGG - chr4.3:49913451-49913470 None:intergenic 40.0%
AATCTCCAACTACTCCACAA+AGG + chr4.3:49915054-49915073 MS.gene66597:CDS 40.0%
AATGGGAACAATGTCGCAAA+AGG + chr4.3:49915338-49915357 MS.gene66597:CDS 40.0%
AATTATCGTCGTAGCAAGTG+GGG - chr4.3:49913798-49913817 None:intergenic 40.0%
ACAGGTAGCAACAACAAAGA+TGG + chr4.3:49915380-49915399 MS.gene66597:CDS 40.0%
ACATGCGAATAAAACGTGTC+AGG - chr4.3:49911850-49911869 None:intergenic 40.0%
ACTCTCCACTATAAGATGAG+TGG + chr4.3:49913176-49913195 MS.gene66597:intron 40.0%
AGACAAGAGAACTAAAAGGG+AGG + chr4.3:49910818-49910837 MS.gene66597:CDS 40.0%
AGAGTAGCTGATAAAACTGC+AGG - chr4.3:49915257-49915276 None:intergenic 40.0%
AGGAATTTGCAGAAGTCTGA+CGG - chr4.3:49915109-49915128 None:intergenic 40.0%
AGGGATGCTCTTAATACTTC+TGG - chr4.3:49914092-49914111 None:intergenic 40.0%
AGTACTATGTGTAGCATCCA+TGG - chr4.3:49910367-49910386 None:intergenic 40.0%
ATTACCAGTGTAGGATTGCT+TGG + chr4.3:49913489-49913508 MS.gene66597:intron 40.0%
ATTCGAGTGTCACACGTTAA+CGG - chr4.3:49910977-49910996 None:intergenic 40.0%
ATTGGAAGACCTTATGGAAC+TGG - chr4.3:49913881-49913900 None:intergenic 40.0%
CAATTATCGTCGTAGCAAGT+GGG - chr4.3:49913799-49913818 None:intergenic 40.0%
CAGGTAGCAACAACAAAGAT+GGG + chr4.3:49915381-49915400 MS.gene66597:CDS 40.0%
CATGCGAATAAAACGTGTCA+GGG - chr4.3:49911849-49911868 None:intergenic 40.0%
CCATATAGTAAGTACGTCGA+TGG - chr4.3:49914645-49914664 None:intergenic 40.0%
CCATCGACGTACTTACTATA+TGG + chr4.3:49914642-49914661 MS.gene66597:intron 40.0%
CCCGGAAAATTTGAGTAGTA+AGG - chr4.3:49911545-49911564 None:intergenic 40.0%
CGGCCAACCAAATAAAAGTT+TGG + chr4.3:49913838-49913857 MS.gene66597:intron 40.0%
CTCTTAATACTTCTGGTGAC+TGG - chr4.3:49914085-49914104 None:intergenic 40.0%
CTGCAACGATAATACGCTTT+AGG - chr4.3:49912773-49912792 None:intergenic 40.0%
CTGGACCATCAAAATCAGAA+GGG + chr4.3:49913994-49914013 MS.gene66597:intron 40.0%
GCAAAAAAGTCCGCATCAAA+AGG - chr4.3:49913427-49913446 None:intergenic 40.0%
GCTACTCTTACTTCCATGAT+TGG + chr4.3:49915269-49915288 MS.gene66597:CDS 40.0%
GGATGTCAATGGAGAAAGTA+TGG + chr4.3:49912719-49912738 MS.gene66597:CDS 40.0%
GTATCATATAGGGGCAATGA+CGG - chr4.3:49911569-49911588 None:intergenic 40.0%
GTCATTGCCCCTATATGATA+CGG + chr4.3:49911568-49911587 MS.gene66597:intron 40.0%
TAACGTGTGACACTCGAATA+GGG + chr4.3:49910978-49910997 MS.gene66597:intron 40.0%
TACTAATGCTGAGACTGTGA+TGG + chr4.3:49912396-49912415 MS.gene66597:intron 40.0%
TAGATGAGATTGGAGAGGTT+TGG - chr4.3:49910428-49910447 None:intergenic 40.0%
TAGCAACAACAAAGATGGGA+AGG + chr4.3:49915385-49915404 MS.gene66597:CDS 40.0%
TATCATATAGGGGCAATGAC+GGG - chr4.3:49911568-49911587 None:intergenic 40.0%
TCTGGACCATCAAAATCAGA+AGG + chr4.3:49913993-49914012 MS.gene66597:intron 40.0%
TCTTCTTTCTCTTTGGGCTT+TGG - chr4.3:49912867-49912886 None:intergenic 40.0%
TGCTACGACGATAATTGGTA+AGG + chr4.3:49913802-49913821 MS.gene66597:intron 40.0%
TGGACCATCAAAATCAGAAG+GGG + chr4.3:49913995-49914014 MS.gene66597:intron 40.0%
TGGCAGTTCCAAATATTGCT+CGG + chr4.3:49915195-49915214 MS.gene66597:CDS 40.0%
TGGGACTAAGTTTCAACTCA+AGG - chr4.3:49910338-49910357 None:intergenic 40.0%
TTAACGTGTGACACTCGAAT+AGG + chr4.3:49910977-49910996 MS.gene66597:intron 40.0%
! AATTGTGATGGTGCTTGGAA+GGG - chr4.3:49913354-49913373 None:intergenic 40.0%
! ACTGGTGCCAAGGAAAATTA+TGG + chr4.3:49912135-49912154 MS.gene66597:CDS 40.0%
! AGATCACTGATGGATGTCAA+TGG + chr4.3:49912708-49912727 MS.gene66597:intron 40.0%
! AGCTTAATTGTGATGGTGCT+TGG - chr4.3:49913359-49913378 None:intergenic 40.0%
! GCTTTTCATGCTGAAATGTG+GGG - chr4.3:49913240-49913259 None:intergenic 40.0%
! GGAGAGTGACTCAAAGATTT+TGG - chr4.3:49913163-49913182 None:intergenic 40.0%
! GTAGCAGTAGTAGTGTTGTT+TGG - chr4.3:49915305-49915324 None:intergenic 40.0%
! TAAAATGGAAGTGAGGGCAT+TGG - chr4.3:49911031-49911050 None:intergenic 40.0%
! TAATTGTGATGGTGCTTGGA+AGG - chr4.3:49913355-49913374 None:intergenic 40.0%
! TAGCTAGGTAGCTACCATTT+TGG - chr4.3:49914702-49914721 None:intergenic 40.0%
! TGGAGGACCTAATATTGACT+AGG - chr4.3:49910398-49910417 None:intergenic 40.0%
!! AAAAGACTCTGAAGCTCACT+AGG + chr4.3:49912943-49912962 MS.gene66597:intron 40.0%
!! CACGTTTTATTCGCATGTGA+TGG + chr4.3:49911852-49911871 MS.gene66597:intron 40.0%
!! CGATAATACGCTTTAGGACA+TGG - chr4.3:49912767-49912786 None:intergenic 40.0%
!! GAAATTTGTTGATGCTGGGT+TGG + chr4.3:49912267-49912286 MS.gene66597:CDS 40.0%
!! GTTGGTTTGGTTTGTAGCTT+TGG + chr4.3:49911113-49911132 MS.gene66597:intron 40.0%
!!! AGAGGTTTGGTTTTCATTGG+AGG - chr4.3:49910415-49910434 None:intergenic 40.0%
!!! GGAACTGCCAATAGTTTTGA+AGG - chr4.3:49915185-49915204 None:intergenic 40.0%
!!! TGGAGAGGTTTGGTTTTCAT+TGG - chr4.3:49910418-49910437 None:intergenic 40.0%
AACTGATCTGGGTTCCTTTG+TGG - chr4.3:49915071-49915090 None:intergenic 45.0%
AAGACCAAGCAATCCTACAC+TGG - chr4.3:49913496-49913515 None:intergenic 45.0%
ACTTAGTCCCAACGAAACCA+TGG + chr4.3:49910347-49910366 MS.gene66597:CDS 45.0%
AGCGTATTATCGTTGCAGCA+TGG + chr4.3:49912775-49912794 MS.gene66597:CDS 45.0%
AGCTTAACCCAACCAATCTG+AGG + chr4.3:49913375-49913394 MS.gene66597:intron 45.0%
AGGCAGAGACAACTTCTTGA+TGG - chr4.3:49910497-49910516 None:intergenic 45.0%
ATTACCCATACTTGGCGTGA+AGG - chr4.3:49913045-49913064 None:intergenic 45.0%
ATTATCGTCGTAGCAAGTGG+GGG - chr4.3:49913797-49913816 None:intergenic 45.0%
CAAAATCAGAAGGGGTTGGA+AGG + chr4.3:49914003-49914022 MS.gene66597:intron 45.0%
CATGTACCTAGGTTTGGACT+TGG - chr4.3:49913217-49913236 None:intergenic 45.0%
CCAATTATCGTCGTAGCAAG+TGG - chr4.3:49913800-49913819 None:intergenic 45.0%
CCATCAAAATCAGAAGGGGT+TGG + chr4.3:49913999-49914018 MS.gene66597:intron 45.0%
GAAGACCTTATGGAACTGGA+AGG - chr4.3:49913877-49913896 None:intergenic 45.0%
GAGGTGATTGGAAGACCTTA+TGG - chr4.3:49913887-49913906 None:intergenic 45.0%
GGAGAAATGGGTGACACTAA+TGG - chr4.3:49911198-49911217 None:intergenic 45.0%
GGCAGTTCCAAATATTGCTC+GGG + chr4.3:49915196-49915215 MS.gene66597:CDS 45.0%
GGTAAGGATTCTTCCATGAG+CGG + chr4.3:49913818-49913837 MS.gene66597:intron 45.0%
GTAGCATCCATGGTTTCGTT+GGG - chr4.3:49910357-49910376 None:intergenic 45.0%
GTTGGTGCAAAGGCAATGTA+GGG + chr4.3:49912360-49912379 MS.gene66597:intron 45.0%
TCATCCTTTCTCGCACAACA+AGG + chr4.3:49913750-49913769 MS.gene66597:intron 45.0%
TCGCACAACAAGGACAAGTA+GGG + chr4.3:49913760-49913779 MS.gene66597:intron 45.0%
TCTGATGGCAGATGGATCAA+AGG - chr4.3:49913291-49913310 None:intergenic 45.0%
TGGCTGAGTATCACCAATCA+TGG - chr4.3:49915285-49915304 None:intergenic 45.0%
TGTAGCATCCATGGTTTCGT+TGG - chr4.3:49910358-49910377 None:intergenic 45.0%
TTCGAGTGTCACACGTTAAC+GGG - chr4.3:49910976-49910995 None:intergenic 45.0%
TTGACTGCCCGAGCAATATT+TGG - chr4.3:49915206-49915225 None:intergenic 45.0%
TTGAGAGATCAGAGAAGCTG+AGG - chr4.3:49915129-49915148 None:intergenic 45.0%
TTGTCGAATACGCTTGACCA+AGG + chr4.3:49913092-49913111 MS.gene66597:intron 45.0%
TTTGCAGCAAGAGACCTCTT+TGG - chr4.3:49913916-49913935 None:intergenic 45.0%
! AGTTGGTGCAAAGGCAATGT+AGG + chr4.3:49912359-49912378 MS.gene66597:intron 45.0%
! ATCAGCGTTGAAAAGCTTCG+AGG + chr4.3:49912474-49912493 MS.gene66597:CDS 45.0%
! CCAACCCCTTCTGATTTTGA+TGG - chr4.3:49914002-49914021 None:intergenic 45.0%
! CCACTTGCTACGACGATAAT+TGG + chr4.3:49913797-49913816 MS.gene66597:intron 45.0%
! TTGTCCTTGTTGTGCGAGAA+AGG - chr4.3:49913757-49913776 None:intergenic 45.0%
! TTTATTTGGTTGGCCGCTCA+TGG - chr4.3:49913834-49913853 None:intergenic 45.0%
! TTTGATGGTCCAGACACTGT+AGG - chr4.3:49913987-49914006 None:intergenic 45.0%
!! ATGATGGAGAGTTGGTGCAA+AGG + chr4.3:49912350-49912369 MS.gene66597:intron 45.0%
!! GCAGAAGTCTGACGGATTAA+AGG - chr4.3:49915101-49915120 None:intergenic 45.0%
!! TGCTGGGTTGGCTACTAATA+AGG + chr4.3:49912279-49912298 MS.gene66597:CDS 45.0%
!!! ATATATATATATAATTTTCT+TGG + chr4.3:49911091-49911110 MS.gene66597:intron 5.0%
!!! TTTCTTTTTTTTTTTTTTTT+TGG + chr4.3:49912829-49912848 MS.gene66597:intron 5.0%
AAGCATCTTTGCAGCTGCAG+AGG - chr4.3:49914898-49914917 None:intergenic 50.0%
AAGGGATCTGGTACTCTTGC+AGG - chr4.3:49913336-49913355 None:intergenic 50.0%
AAGTCTGAGCCATACCTGAG+TGG + chr4.3:49913692-49913711 MS.gene66597:intron 50.0%
ACCTGCAGCAGCCAAAGAAA+TGG + chr4.3:49914863-49914882 MS.gene66597:CDS 50.0%
AGGGATCTGGTACTCTTGCA+GGG - chr4.3:49913335-49913354 None:intergenic 50.0%
ATCACCTCTCACAGCCAAAG+AGG + chr4.3:49913899-49913918 MS.gene66597:intron 50.0%
ATGATCCTTGTCAGGGACAG+AGG - chr4.3:49910517-49910536 None:intergenic 50.0%
ATGGTCCAGACACTGTAGGA+TGG - chr4.3:49913983-49914002 None:intergenic 50.0%
CACAACAAGGACAAGTAGGG+GGG + chr4.3:49913763-49913782 MS.gene66597:intron 50.0%
CATGTCTGTGACTGCGATGT+AGG - chr4.3:49914317-49914336 None:intergenic 50.0%
CGAATACGCTTGACCAAGGT+AGG + chr4.3:49913096-49913115 MS.gene66597:intron 50.0%
CGCACAACAAGGACAAGTAG+GGG + chr4.3:49913761-49913780 MS.gene66597:intron 50.0%
CTCGCACAACAAGGACAAGT+AGG + chr4.3:49913759-49913778 MS.gene66597:intron 50.0%
CTTTGGCTGCTGCAGGTAAA+GGG - chr4.3:49914860-49914879 None:intergenic 50.0%
CTTTGGCTGTGAGAGGTGAT+TGG - chr4.3:49913899-49913918 None:intergenic 50.0%
GAAATGTGGGGCATGTACCT+AGG - chr4.3:49913228-49913247 None:intergenic 50.0%
GCACAACAAGGACAAGTAGG+GGG + chr4.3:49913762-49913781 MS.gene66597:intron 50.0%
GGGTTCCTTTGTGGAGTAGT+TGG - chr4.3:49915062-49915081 None:intergenic 50.0%
GGGTTGGAAGGGCTAAAATC+TGG + chr4.3:49914015-49914034 MS.gene66597:intron 50.0%
GTGTGACACTCGAATAGGGA+TGG + chr4.3:49910982-49911001 MS.gene66597:intron 50.0%
GTTGCCTTCACGCCAAGTAT+GGG + chr4.3:49913038-49913057 MS.gene66597:intron 50.0%
TCTTTGGCTGCTGCAGGTAA+AGG - chr4.3:49914861-49914880 None:intergenic 50.0%
TGGTCCAGACACTGTAGGAT+GGG - chr4.3:49913982-49914001 None:intergenic 50.0%
TGGTGGAACAACTCCTACCT+TGG - chr4.3:49913112-49913131 None:intergenic 50.0%
TGGTTGCTCAGTCCGAAAAC+AGG + chr4.3:49912802-49912821 MS.gene66597:CDS 50.0%
TGTTGCCTTCACGCCAAGTA+TGG + chr4.3:49913037-49913056 MS.gene66597:intron 50.0%
TTATCGTCGTAGCAAGTGGG+GGG - chr4.3:49913796-49913815 None:intergenic 50.0%
TTCGAGACTCTGATGGCAGA+TGG - chr4.3:49913299-49913318 None:intergenic 50.0%
! AAGGCAACAGAAGTGCGGAT+TGG - chr4.3:49913026-49913045 None:intergenic 50.0%
! AGCGTTGAAAAGCTTCGAGG+AGG + chr4.3:49912477-49912496 MS.gene66597:CDS 50.0%
! AGCTGAGAATGGTGGAGTAC+TGG + chr4.3:49912117-49912136 MS.gene66597:CDS 50.0%
! GTTTTCGGACTGAGCAACCA+CGG - chr4.3:49912802-49912821 None:intergenic 50.0%
! TCTCTGTTGATTGCAGGGAG+TGG - chr4.3:49913644-49913663 None:intergenic 50.0%
! TTTTCGGACTGAGCAACCAC+GGG - chr4.3:49912801-49912820 None:intergenic 50.0%
!! AGACTCTGAAGCTCACTAGG+TGG + chr4.3:49912946-49912965 MS.gene66597:intron 50.0%
!! GCTCACTAGGTGGATTTTCC+AGG + chr4.3:49912956-49912975 MS.gene66597:intron 50.0%
!! GTACTGGCTGCGTAAATGCA+TGG - chr4.3:49914557-49914576 None:intergenic 50.0%
AAGCTTCGAGGAGGCTTCGA+AGG + chr4.3:49912486-49912505 MS.gene66597:CDS 55.0%
ACCTAGGTTTGGACTTGGCG+TGG - chr4.3:49913212-49913231 None:intergenic 55.0%
AGGTTTGGACTTGGCGTGGA+GGG - chr4.3:49913208-49913227 None:intergenic 55.0%
GAGACCTCTTTGGCTGTGAG+AGG - chr4.3:49913906-49913925 None:intergenic 55.0%
GATGGTGCTTGGAAGGGATC+TGG - chr4.3:49913348-49913367 None:intergenic 55.0%
GCCATTTCTTTGGCTGCTGC+AGG - chr4.3:49914867-49914886 None:intergenic 55.0%
GCGTGAAGGCAACAGAAGTG+CGG - chr4.3:49913031-49913050 None:intergenic 55.0%
GGGACCCTTCCAGTTCCATA+AGG + chr4.3:49913869-49913888 MS.gene66597:intron 55.0%
GGGCTTCTTCGAGACTCTGA+TGG - chr4.3:49913306-49913325 None:intergenic 55.0%
GGTCCAGACACTGTAGGATG+GGG - chr4.3:49913981-49914000 None:intergenic 55.0%
GTACTCTTGCAGGGTGTGGA+GGG - chr4.3:49913326-49913345 None:intergenic 55.0%
GTGGGGCATGTACCTAGGTT+TGG - chr4.3:49913223-49913242 None:intergenic 55.0%
TAGGTTTGGACTTGGCGTGG+AGG - chr4.3:49913209-49913228 None:intergenic 55.0%
TCCACGCCAAGTCCAAACCT+AGG + chr4.3:49913208-49913227 MS.gene66597:intron 55.0%
TCTGGTACTCTTGCAGGGTG+TGG - chr4.3:49913330-49913349 None:intergenic 55.0%
TGATTGTGTGCACGCCACTC+AGG - chr4.3:49913709-49913728 None:intergenic 55.0%
TGGCGTGCACACAATCACGA+AGG + chr4.3:49913712-49913731 MS.gene66597:intron 55.0%
! GGTGCGACCTCAGATTGGTT+GGG - chr4.3:49913385-49913404 None:intergenic 55.0%
! TGTCACACGTTAACGGGTCC+AGG - chr4.3:49910970-49910989 None:intergenic 55.0%
!! ATGGTGGAGTACTGGTGCCA+AGG + chr4.3:49912125-49912144 MS.gene66597:CDS 55.0%
CCAGACACTGTAGGATGGGG+AGG - chr4.3:49913978-49913997 None:intergenic 60.0%
CCTCCCCATCCTACAGTGTC+TGG + chr4.3:49913975-49913994 MS.gene66597:intron 60.0%
CTCTGCCTCTGTCCCTGACA+AGG + chr4.3:49910509-49910528 MS.gene66597:CDS 60.0%
GGGTGCGACCTCAGATTGGT+TGG - chr4.3:49913386-49913405 None:intergenic 60.0%
GGTACTCTTGCAGGGTGTGG+AGG - chr4.3:49913327-49913346 None:intergenic 60.0%
GGTTGGGTGCGACCTCAGAT+TGG - chr4.3:49913390-49913409 None:intergenic 60.0%
GTGTGCACGCCACTCAGGTA+TGG - chr4.3:49913704-49913723 None:intergenic 60.0%
GTTCCTAGGCATGCAAGCCC+CGG + chr4.3:49912906-49912925 MS.gene66597:intron 60.0%
TATCGTTGCAGCATGGCCCG+TGG + chr4.3:49912782-49912801 MS.gene66597:CDS 60.0%
TGGCTGCTGCAGGTAAAGGG+TGG - chr4.3:49914857-49914876 None:intergenic 60.0%
TTTCCGGGGCTTGCATGCCT+AGG - chr4.3:49912912-49912931 None:intergenic 60.0%
!! TATAGGGGCAATGACGGGCC+CGG - chr4.3:49911563-49911582 None:intergenic 60.0%
CGTCGTAGCAAGTGGGGGGT+TGG - chr4.3:49913792-49913811 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 49910309 49915412 49910309 ID=MS.gene66597
chr4.3 mRNA 49910309 49915412 49910309 ID=MS.gene66597.t1;Parent=MS.gene66597
chr4.3 exon 49910309 49910578 49910309 ID=MS.gene66597.t1.exon1;Parent=MS.gene66597.t1
chr4.3 CDS 49910309 49910578 49910309 ID=cds.MS.gene66597.t1;Parent=MS.gene66597.t1
chr4.3 exon 49910741 49910839 49910741 ID=MS.gene66597.t1.exon2;Parent=MS.gene66597.t1
chr4.3 CDS 49910741 49910839 49910741 ID=cds.MS.gene66597.t1;Parent=MS.gene66597.t1
chr4.3 exon 49911929 49912300 49911929 ID=MS.gene66597.t1.exon3;Parent=MS.gene66597.t1
chr4.3 CDS 49911929 49912300 49911929 ID=cds.MS.gene66597.t1;Parent=MS.gene66597.t1
chr4.3 exon 49912469 49912609 49912469 ID=MS.gene66597.t1.exon4;Parent=MS.gene66597.t1
chr4.3 CDS 49912469 49912609 49912469 ID=cds.MS.gene66597.t1;Parent=MS.gene66597.t1
chr4.3 exon 49912710 49912823 49912710 ID=MS.gene66597.t1.exon5;Parent=MS.gene66597.t1
chr4.3 CDS 49912710 49912823 49912710 ID=cds.MS.gene66597.t1;Parent=MS.gene66597.t1
chr4.3 exon 49914795 49915412 49914795 ID=MS.gene66597.t1.exon6;Parent=MS.gene66597.t1
chr4.3 CDS 49914795 49915412 49914795 ID=cds.MS.gene66597.t1;Parent=MS.gene66597.t1
Gene Sequence

>MS.gene66597

ATGGATTCAAATCCAGTTAATATTAACCTTGAGTTGAAACTTAGTCCCAACGAAACCATGGATGCTACACATAGTACTATCCCTTTCCTAGTCAATATTAGGTCCTCCAATGAAAACCAAACCTCTCCAATCTCATCTAATGAAACAAGAATAGAGTTTGATTTCTTTAAGGACAACAACAATGACCATCAAGAAGTTGTCTCTGCCTCTGTCCCTGACAAGGATCATATTCATAGTGATACATCATCTTTGTTGGAACTCAAGCTGAGTGTGAGTGACCATAATTCAATATCCCATTATTTTTTTTCTACTTATTATATTAAATATATTGTTTTTAAATTTCATAGCTTTTGAATTTGTAATCGCAAACAATCATTTATTTTTTATGATCATCTTGATAATTTGGAGAATATGTATTTTTTTCTTCAACAGCTTGGTCCCAATCCTGTTACTACCAATACTAGTAGTGATCAATCTATGATGGATGACGACATGTCACCTAATTCAGAAGACAAGAGAACTAAAAGGGAGGTAATGTTAATGACACCTAGCTGAATTTAATGAACTTATATCTAATGAACATTTTTTTCCTTCCATTTATTGGATCAAAATTGAGTGATTTTATATATAGAATCGTCAATGTCTATATTTGATAATGCCTGGACCCGTTAACGTGTGACACTCGAATAGGGATGGATTCACGTAGACAACAATATGGGCCAATGCCCTCACTTCCATTTTAATTTTTTCAACTATATATATATATATATATATATATATATATATATATATATAATTTTCTTGGTTGGTTTGGTTTGTAGCTTTGGTCTCTTACTCTTCTATGACCTATATTTATAAGTATAGTACAATATAATAATATATGCAACCATTAGTGTCACCCATTTCTCCCCTTTATTTTAACCATAGATAATAATTATGTTTTGATATTGAGTTTAACTAGTATGTTTTGTCAACGTGCAGTAATTTTATACATTCATCCAATGATATGTTATCACGGTAATTAATGAATATCACAACTCATGTGTTTTCATATTTATTAATTGATGTAGCAACACATCATTGGATGAAAGTGTAAAATAATTGTACAAAGTACACTAAATAATTTCTTTCATATTTTTTTCTTTCCTTTATTTGGTTTCATTTTTTAAAACATACTTTGTTTAATATGTTAAACCTAAATTGAATTTATTTATTCAATATTTTAAATACTTCCCTTACTACTCAAATTTTCCGGGCCCGTCATTGCCCCTATATGATACGGACAGAAACAATTACATTTTAGTGTTGAGTGTCAGTTTTATTGTTTTGTCCAGTGTTTATGTGTATGTCAGTGTTTATAGAATATTTTTATGTGATTTGGATCCTCTTATTTGTGAAACAAATATGTGAGTTATGTCACTAAACTCACTATTAAAATGCATTGCACTCTTAGAACACTATTAACATGATGGGGTCCAATGCATTTTGTTTTTGCTGAATAATCGAATTCAATTTAATGGTGAAATGATTATTGTAACCCTGACACGTTTTATTCGCATGTGATGGGATCCAAATCCATTTTTTATGTGATGATATTTGAATTCATTGAACTGTTTTCAGATGGCTATTCTTCAAGGCGAGCTTAAACGAAAGAAAACAGAGAACTGTAGATTAAAATTGATGTATGATCAGCTTAGAACAGATTACAATTACATGCGAATGGATTTCGAGAAAGTGATGCAAGATTGTAAGGTTAAGGAAGTCAAAGGAAAAGAAGTTTTTGATGGAAAAATTAAAGAGAAAAAAATAGCTGAGAATGGTGGAGTACTGGTGCCAAGGAAAATTATGGATCTTGGATCAGCTACTAATAAGGTTATGGAAGTTAAAGGACAAGAAGTTTATGATGGAAAATTTGGTGAGAAAAAGAGAATGAAGAATGGTGGAGAATTAGTGAAAAGGAAATTTGTTGATGCTGGGTTGGCTACTAATAAGGTGAAAGAAGTGTTTAATGGTAAATGTGAAAAGAAAAAGAGAATTGAGAATGATGGAGAGTTGGTGCAAAGGCAATGTAGGGATCTTGTGTTGATTACTAATGCTGAGACTGTGATGGATCATGAAGCTTCTTCCTCATCAATGAGAAAACCTATAAGTAAAGATTAGTTAGGATCAGCGTTGAAAAGCTTCGAGGAGGCTTCGAAGGAGTTAGTCCTAAGTAAGAATGAGGATGTTAATGTTGAAAATGTTGAGGCTACATTGACAAAAGCAAGAGTTACTATTAGAGCTAGATCAGAAGAAACCATTGTAAGTATCTTAAAGTGTATATTAACTTTCAACTTTGCAAGATTTTATATAATAAATTGCTGTTCTTTTTCGCTAAAAGAAATTATTTTTATTGTGTTAGATCACTGATGGATGTCAATGGAGAAAGTATGGACAGAAACTGTCGAAAAGAAACCCATGTCCTAAAGCGTATTATCGTTGCAGCATGGCCCGTGGTTGCTCAGTCCGAAAACAGGTAACTTTCTTTTTTTTTTTTTTTTTGGTACAAAAGAGGGCCAAAGCCCAAAGAGAAAGAAGACTTAAGAAATTAAACGAACGTTCCTAGGCATGCAAGCCCCGGAAATATCATCAAACAAAAGACTCTGAAGCTCACTAGGTGGATTTTCCAGGACATGAAAATCTAGAGAATCCATCGAAATGCTGAAATTAGCAAGCCAATCCGCACTTCTGTTGCCTTCACGCCAAGTATGGGTAATTTTGACATTCCAACTCAAACTCAAAAGTTGTCGAATACGCTTGACCAAGGTAGGAGTTGTTCCACCAAAATTGCAATTTTCAGTAATCATATCGACCAAAATCTTTGAGTCACTCTCCACTATAAGATGAGTGGTATTCTCCCTCCACGCCAAGTCCAAACCTAGGTACATGCCCCACATTTCAGCATGAAAAGCATCACACATTCCAATCTTCTTGAAGTAGCCTTTGATCCATCTGCCATCAGAGTCTCGAAGAAGCCCTCCACACCCTGCAAGAGTACCAGATCCCTTCCAAGCACCATCACAATTAAGCTTAACCCAACCAATCTGAGGTCGCACCCAACCGATATATATAGTTTCCTTTTGATGCGGACTTTTTTGCACCAGCTTCGTACTGTCTTCTATTTCTCTAGTAAACTTTTGAATTACCAGTGTAGGATTGCTTGGTCTTTGAAATCCTATTTCAAAAATAGATTTGTTTCGCCAAATCCATAAATACCAACATGTTGTCATGAAAGTAGTCTGCCAAGTAGTAGGATTATCTCCAATCCCTTTTTTATTAAGGTTGTTAAAGATCCACTCCCTGCAATCAACAGAGAAGAAATTAGTTATGTAATTAGACGGAATAAGTCTGAGCCATACCTGAGTGGCGTGCACACAATCACGAAGGACATGAATGACTGTTTCATCCTTTCTCGCACAACAAGGACAAGTAGGGGGGATACCAACCCCCCACTTGCTACGACGATAATTGGTAAGGATTCTTCCATGAGCGGCCAACCAAATAAAAGTTTGGATACGATGGGGACCCTTCCAGTTCCATAAGGTCTTCCAATCACCTCTCACAGCCAAAGAGGTCTCTTGCTGCAAATTGTAAGCACTTTGAACAGTAAACTGGAGAGTGCTAGTTCCTCCCCATCCTACAGTGTCTGGACCATCAAAATCAGAAGGGGTTGGAAGGGCTAAAATCTGGTTAACAATGTTCACAGGCAAGTTATCCATCAAAAAATTTAGATCCCAGTCACCAGAAGTATTAAGAGCATCCCTAACTGAAATAGTAGTATCCACATAAGATTGATTAGCAGAAGAGAAGAGAGAAGTATTATGGTTTTATTATGGTTTTAAATTTCTGTCACCTTAATGATTGCTTTCGCATTATTACATTCAACATTATATAGAATTACAATCAAATATGATTTATGCAACGTTTGCATTATAATCTTAATGACATTAAACTCTTTGATTGTTTCCTACATCGCAGTCACAGACATGCATATTTTAAGACCTTGGTCTTTAATCATTATCTTTATGTATGTTTTCAACTACTTACAAAATTACTTTGCATAGACAAATTTTTTTAGTAAATGATTAATTTGATATACATTGCACGAGGTTGAATAACAATAGAATTTAATTGAAATGTGTTTCCACTTTCAAAGCTCATGTTTCTATGCTAGAAAATGGATTTGGATTTGCTCCATTCTGCAATCCATGCATTTACGCAGCCAGTACGTCAATGACCATTAAAAATTTAAATATGCATTGATGTTTGGATCATCCAATCTTCAATACAACGACCATCGACGTACTTACTATATGGATGCATGAATTTTATGACTGCAACAAACTCAAATCCAAAATGGTAGCTACCTAGCTAGGTTAGTTAAAATACTAATGAAGTGGTATGTATTATAATGACAATATTATTCACTATAGTTCAAACTTAACAGGTACAAAGGTGTGCTCTTGACAGAGCAGTTGTCATCACAACATATGAAGGAAATCACAACCACCCTTTACCTGCAGCAGCCAAAGAAATGGCAAAAACAACCTCTGCAGCTGCAAAGATGCTTCTTTCAACATCAACATCAAGCAATGATGGACAATTGAATGCAAATTTACTCAGAAGAACACCCCTTCCTTGTTCTTCAAGTATTGCAACTATCTCAACTTCTGCCCCATTTCCAACCATTACACTTGATTATACTCAATCTCCAACTACTCCACAAAGGAACCCAGATCAGTTTCAAACTCCTTTAATCCGTCAGACTTCTGCAAATTCCTCAGCTTCTCTGATCTCTCAAACACCTAATCAGAACCAATCAAAATTTTGTGTGCCTTCAAAACTATTGGCAGTTCCAAATATTGCTCGGGCAGTCAACGCTGCCATTGCTGCTAATCCAAATTTTCCTGCAGTTTTATCAGCTACTCTTACTTCCATGATTGGTGATACTCAGCCAAACAACACTACTACTGCTACTGATAATAATAATAATGGGAACAATGTCGCAAAAGGTAATAACAATGGAAATATCACAGGTAGCAACAACAAAGATGGGAAGGAATAA
Protein sequence

>MS.gene66597.t1

MDSNPVNINLELKLSPNETMDATHSTIPFLVNIRSSNENQTSPISSNETRIEFDFFKDNNNDHQEVVSASVPDKDHIHSDTSSLLELKLSLGPNPVTTNTSSDQSMMDDDMSPNSEDKRTKREMAILQGELKRKKTENCRLKLMYDQLRTDYNYMRMDFEKVMQDCKVKEVKGKEVFDGKIKEKKIAENGGVLVPRKIMDLGSATNKVMEVKGQEVYDGKFGEKKRMKNGGELVKRKFVDAGLATNKLGSALKSFEEASKELVLSKNEDVNVENVEATLTKARVTIRARSEETIITDGCQWRKYGQKLSKRNPCPKAYYRCSMARGCSVRKQVQRCALDRAVVITTYEGNHNHPLPAAAKEMAKTTSAAAKMLLSTSTSSNDGQLNANLLRRTPLPCSSSIATISTSAPFPTITLDYTQSPTTPQRNPDQFQTPLIRQTSANSSASLISQTPNQNQSKFCVPSKLLAVPNIARAVNAAIAANPNFPAVLSATLTSMIGDTQPNNTTTATDNNNNGNNVAKGNNNGNITGSNNKDGKE