AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66770.t1 MTR_4g049760 64.762 420 74 5 33 428 8 377 1.03e-178 514
MS.gene66770.t1 MTR_4g049790 55.847 496 135 10 1 470 1 438 1.77e-167 486
MS.gene66770.t1 MTR_4g047580 56.028 423 109 9 28 428 1 368 1.07e-139 414
MS.gene66770.t1 MTR_4g047580 61.053 95 33 2 419 511 444 536 7.12e-17 84.0
MS.gene66770.t1 MTR_2g088000 39.714 350 145 10 90 428 142 436 8.01e-61 211
MS.gene66770.t1 MTR_2g023930 32.520 369 163 11 44 401 72 365 8.18e-39 149
MS.gene66770.t1 MTR_3g053330 31.642 335 139 10 117 441 93 347 6.26e-36 140
MS.gene66770.t1 MTR_4g132430 51.007 149 43 3 327 465 105 233 3.32e-35 135
MS.gene66770.t1 MTR_4g132430 51.007 149 43 3 327 465 239 367 1.89e-34 136
MS.gene66770.t1 MTR_7g110720 64.894 94 21 2 334 417 174 265 1.08e-33 132
MS.gene66770.t1 MTR_7g110720 64.894 94 21 2 334 417 201 292 1.43e-33 132
MS.gene66770.t1 MTR_2g045360 51.402 107 40 2 329 425 191 295 8.00e-28 116
MS.gene66770.t1 MTR_7g009730 47.619 126 48 3 306 415 170 293 2.30e-27 116
MS.gene66770.t1 MTR_4g094412 54.369 103 35 2 334 426 219 319 3.52e-23 102
MS.gene66770.t1 MTR_4g094412 54.369 103 35 2 334 426 228 328 3.95e-23 102
MS.gene66770.t1 MTR_4g107970 56.250 96 30 2 334 419 163 256 1.06e-20 95.9
MS.gene66770.t1 MTR_4g107970 56.250 96 30 2 334 419 240 333 1.30e-20 95.9
MS.gene66770.t1 MTR_6g038890 69.388 49 13 1 327 375 166 212 2.96e-17 81.3
MS.gene66770.t1 MTR_4g007060 26.816 179 91 5 326 466 105 281 1.47e-16 80.5
MS.gene66770.t1 MTR_4g007060 26.816 179 91 5 326 466 139 315 1.71e-16 80.9
MS.gene66770.t1 MTR_5g044695 69.388 49 13 1 327 375 55 101 6.46e-16 73.9
MS.gene66770.t1 MTR_3g056100 35.398 113 59 3 319 419 241 351 3.40e-14 75.1
MS.gene66770.t1 MTR_3g056100 35.398 113 59 3 319 419 228 338 3.75e-14 75.1
MS.gene66770.t1 MTR_3g056100 35.398 113 59 3 319 419 385 495 3.85e-14 75.5
MS.gene66770.t1 MTR_3g056100 35.398 113 59 3 319 419 372 482 4.65e-14 75.1
MS.gene66770.t1 MTR_7g109800 38.947 95 43 3 334 419 130 218 1.06e-13 72.4
MS.gene66770.t1 MTR_2g105060 26.627 169 91 5 331 466 71 239 1.54e-13 70.9
MS.gene66770.t1 MTR_2g105060 26.627 169 91 5 331 466 146 314 2.06e-13 71.6
MS.gene66770.t1 MTR_4g094588 37.838 111 54 4 336 434 165 272 2.35e-13 71.6
MS.gene66770.t1 MTR_7g011820 35.897 117 54 3 306 413 377 481 4.03e-13 72.0
MS.gene66770.t1 MTR_5g042920 38.532 109 48 4 306 401 277 379 6.12e-13 71.2
MS.gene66770.t1 MTR_2g033820 39.506 81 38 2 334 405 188 266 9.18e-13 70.5
MS.gene66770.t1 MTR_3g106060 29.762 168 76 6 335 464 122 285 9.54e-13 69.3
MS.gene66770.t1 MTR_1g013790 27.848 158 78 5 336 464 86 236 1.04e-12 68.6
MS.gene66770.t1 MTR_4g013260 46.250 80 32 2 331 401 318 395 1.56e-12 70.1
MS.gene66770.t1 MTR_1g086790 40.506 79 36 2 336 405 145 221 1.98e-12 68.9
MS.gene66770.t1 MTR_5g094430 40.449 89 39 3 332 408 235 321 4.40e-12 68.6
MS.gene66770.t1 MTR_3g031220 37.624 101 52 2 311 402 327 425 4.56e-12 68.9
MS.gene66770.t1 MTR_5g094430 40.449 89 39 3 332 408 213 299 4.66e-12 68.2
MS.gene66770.t1 MTR_5g094430 40.449 89 39 3 332 408 347 433 9.03e-12 67.8
MS.gene66770.t1 MTR_5g074400 39.130 92 45 2 319 401 390 479 9.13e-12 68.2
MS.gene66770.t1 MTR_1g013760 27.044 159 85 5 336 467 125 279 1.02e-11 66.2
MS.gene66770.t1 MTR_3g009470 42.683 82 36 2 331 403 477 556 1.07e-11 67.8
MS.gene66770.t1 MTR_7g028415 44.737 76 31 2 338 404 82 155 1.32e-11 63.5
MS.gene66770.t1 MTR_7g028710 44.737 76 31 2 338 404 82 155 1.32e-11 63.5
MS.gene66770.t1 MTR_4g082580 37.500 96 46 3 331 414 260 353 1.48e-11 66.6
MS.gene66770.t1 MTR_7g071120 45.000 80 33 2 331 401 306 383 1.94e-11 66.6
MS.gene66770.t1 MTR_5g091390 40.506 79 36 2 336 405 144 220 4.03e-11 64.7
MS.gene66770.t1 MTR_7g079010 41.975 81 36 2 328 399 120 198 4.06e-11 63.2
MS.gene66770.t1 MTR_4g122530 37.500 80 39 2 335 405 194 271 6.05e-11 65.1
MS.gene66770.t1 MTR_1g015140 34.653 101 55 2 308 399 61 159 6.90e-11 61.2
MS.gene66770.t1 MTR_7g080000 41.111 90 37 3 328 403 406 493 9.07e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66770.t1 AT4G04450 34.961 389 162 12 70 434 68 389 8.00e-47 171
MS.gene66770.t1 AT4G04450 35.376 359 144 12 100 434 1 295 3.24e-43 159
MS.gene66770.t1 AT1G62300 53.741 147 49 5 328 457 291 435 2.37e-33 134
MS.gene66770.t1 AT4G22070 61.905 84 20 2 328 401 276 357 1.29e-28 119
MS.gene66770.t1 AT4G22070 61.905 84 20 2 328 401 276 357 1.29e-28 119
MS.gene66770.t1 AT4G22070 61.905 84 20 2 328 401 276 357 1.29e-28 119
MS.gene66770.t1 AT4G22070 61.905 84 20 2 328 401 276 357 1.29e-28 119
MS.gene66770.t1 AT1G68150 41.497 147 66 5 318 451 201 340 4.43e-27 113
MS.gene66770.t1 AT5G15130 56.522 92 28 2 334 415 170 259 2.35e-26 112
MS.gene66770.t1 AT5G15130 56.522 92 28 2 334 415 212 301 2.52e-26 113
MS.gene66770.t1 AT4G01720 61.538 78 18 2 334 401 224 299 2.93e-25 109
MS.gene66770.t1 AT1G18860 31.481 324 166 11 111 419 35 317 1.26e-23 104
MS.gene66770.t1 AT1G69810 48.571 105 41 3 322 415 118 220 2.16e-21 95.9
MS.gene66770.t1 AT1G69810 48.571 105 41 3 322 415 176 278 2.94e-21 96.3
MS.gene66770.t1 AT4G18170 33.333 135 79 2 302 427 125 257 1.23e-14 75.5
MS.gene66770.t1 AT1G29860 41.053 95 41 3 334 419 121 209 1.34e-14 74.7
MS.gene66770.t1 AT1G80840 29.714 175 77 7 329 461 121 291 3.42e-14 73.9
MS.gene66770.t1 AT5G46350 38.462 104 43 3 336 430 170 261 1.43e-13 72.4
MS.gene66770.t1 AT2G25000 26.357 258 154 7 223 468 16 249 2.36e-13 70.5
MS.gene66770.t1 AT1G64000 40.206 97 43 3 331 418 96 186 3.03e-13 68.9
MS.gene66770.t1 AT1G13960 43.750 80 34 2 331 401 391 468 3.78e-13 72.4
MS.gene66770.t1 AT5G41570 38.614 101 47 3 335 426 84 178 4.02e-13 68.2
MS.gene66770.t1 AT1G13960 43.750 80 34 2 331 401 238 315 4.85e-13 71.2
MS.gene66770.t1 AT2G03340 39.583 96 43 3 319 401 381 474 5.26e-13 71.6
MS.gene66770.t1 AT2G25000 28.070 171 106 4 309 468 63 227 1.06e-12 68.2
MS.gene66770.t1 AT2G25000 28.070 171 106 4 309 468 63 227 1.06e-12 68.2
MS.gene66770.t1 AT2G25000 28.070 171 106 4 309 468 106 270 1.27e-12 68.6
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 188 266 2.09e-12 69.3
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 188 266 2.09e-12 69.3
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 188 266 2.09e-12 69.3
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 188 266 2.09e-12 69.3
MS.gene66770.t1 AT5G49520 40.741 81 37 2 334 405 206 284 2.09e-12 69.3
MS.gene66770.t1 AT5G13080 44.304 79 33 2 336 405 54 130 2.73e-12 65.1
MS.gene66770.t1 AT3G01080 39.080 87 42 2 324 401 319 403 2.86e-12 69.3
MS.gene66770.t1 AT3G01080 39.535 86 41 2 325 401 282 365 3.08e-12 68.9
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 292 370 3.36e-12 69.3
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 324 402 3.42e-12 69.3
MS.gene66770.t1 AT4G26640 43.210 81 35 2 332 403 364 442 3.78e-12 69.3
MS.gene66770.t1 AT5G07100 41.237 97 39 3 322 402 107 201 4.25e-12 66.2
MS.gene66770.t1 AT5G07100 41.237 97 39 3 322 402 107 201 4.25e-12 66.2
MS.gene66770.t1 AT5G07100 41.237 97 39 3 322 402 107 201 4.25e-12 66.2
MS.gene66770.t1 AT5G07100 41.237 97 39 3 322 402 107 201 4.25e-12 66.2
MS.gene66770.t1 AT5G07100 41.237 97 39 3 322 402 200 294 7.87e-12 67.0
MS.gene66770.t1 AT2G47260 39.286 84 40 2 334 408 159 240 1.09e-11 66.6
MS.gene66770.t1 AT2G38470 42.500 80 35 2 331 401 344 421 1.65e-11 67.0
MS.gene66770.t1 AT3G62340 43.421 76 32 2 335 401 104 177 4.01e-11 64.3
MS.gene66770.t1 AT4G31800 33.333 99 53 2 334 419 91 189 4.38e-11 63.5
MS.gene66770.t1 AT5G56270 43.038 79 34 2 332 401 470 546 5.57e-11 65.9
MS.gene66770.t1 AT4G31800 33.333 99 53 2 334 419 156 254 5.59e-11 64.3
MS.gene66770.t1 AT3G01970 45.205 73 29 2 335 398 51 121 6.08e-11 61.2
MS.gene66770.t1 AT2G30250 46.154 65 26 1 350 405 327 391 6.43e-11 64.7

Find 93 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGAGTTCGATTTCTTTA+AGG 0.143956 4.3:+46744960 MS.gene66770:CDS
GAAATTTCTGAGGGGAAATT+TGG 0.148151 4.3:+46746688 MS.gene66770:CDS
GACAAAGATGCAAGAAAATT+TGG 0.170415 4.3:-46748691 None:intergenic
CTTTAACTTCCTTAAACTTA+TGG 0.217911 4.3:-46746546 None:intergenic
GGAAAATAGTTGTTATTAAC+TGG 0.226043 4.3:-46744799 None:intergenic
CCTGGTCTTACTTCCTTTAT+TGG 0.243665 4.3:+46748715 MS.gene66770:CDS
TTAACTGCCTGAGCAATATT+TGG 0.250376 4.3:-46748649 None:intergenic
GATGCTGGACCATAAGTTTA+AGG 0.279643 4.3:+46746537 MS.gene66770:CDS
CATAAGTTTAAGGAAGTTAA+AGG 0.283329 4.3:+46746547 MS.gene66770:CDS
TGCTGGATTGACTACTAATA+AGG 0.291693 4.3:+46746765 MS.gene66770:CDS
AATAAGGTTAAGGAAGTTAA+AGG 0.305864 4.3:+46746781 MS.gene66770:CDS
CGAGCTTGAACGAAAGAAAA+TGG 0.321409 4.3:+46746438 MS.gene66770:CDS
AAAAGGAAATTTATTGATGC+TGG 0.322652 4.3:+46746748 MS.gene66770:CDS
TCAAGGTTGTTAGTGTCTTC+AGG 0.328679 4.3:-46744820 None:intergenic
TCCCTTTCCTAGTCAATATT+AGG 0.338934 4.3:+46744890 MS.gene66770:CDS
TCTTGGATCGACTACTAATA+TGG 0.352049 4.3:+46746645 MS.gene66770:CDS
GAGATGAGATTGGAGAGATT+TGG 0.352797 4.3:-46744927 None:intergenic
TTATTGTGTTAGATCACTAA+TGG 0.353514 4.3:+46747196 MS.gene66770:intron
GGATGTCAATGGAGAAAGTA+TGG 0.358493 4.3:+46747217 MS.gene66770:CDS
GCCATTTCTTTGGCTGTTGT+AGG 0.370953 4.3:-46748283 None:intergenic
AACTGAGAATGGTGGAGTAC+TGG 0.384618 4.3:+46746609 MS.gene66770:CDS
AATATGGTTAAGGAAGTTAA+AGG 0.385105 4.3:+46746661 MS.gene66770:CDS
TCTTTGGCTGTTGTAGGTAA+AGG 0.385276 4.3:-46748277 None:intergenic
CTTTGGCTGTTGTAGGTAAA+GGG 0.385364 4.3:-46748276 None:intergenic
TTACTAGTATTGGTAGTAAC+AGG 0.385401 4.3:-46745255 None:intergenic
CTTGTTTCATGAGATGAGAT+TGG 0.387183 4.3:-46744937 None:intergenic
TGGCTGAGTATGACCAATAA+AGG 0.401693 4.3:-46748728 None:intergenic
TTTCAGATGGCTATTCTTCA+AGG 0.408471 4.3:+46746415 MS.gene66770:intron
AAAGGAAAAGAAGTCTTTGA+TGG 0.410843 4.3:+46746565 MS.gene66770:CDS
GTACACTTTAACATACCATA+TGG 0.431226 4.3:-46747106 None:intergenic
TAAATCTTATTATCGAAAAC+AGG 0.434395 4.3:+46747270 MS.gene66770:CDS
GTAAAAGCAATGTTGTTGTT+TGG 0.434434 4.3:-46748748 None:intergenic
ATTGACTACTAATAAGGTTA+AGG 0.438970 4.3:+46746771 MS.gene66770:CDS
ATATGAACATGATCATTGTC+AGG 0.439509 4.3:-46745024 None:intergenic
TAACATCCACATTCTTACTA+AGG 0.444417 4.3:-46747017 None:intergenic
CGATAATAAGATTTAGGACA+TGG 0.445164 4.3:-46747262 None:intergenic
ATCGACTACTAATATGGTTA+AGG 0.451220 4.3:+46746651 MS.gene66770:CDS
ACCTACAACAGCCAAAGAAA+TGG 0.451222 4.3:+46748282 MS.gene66770:CDS
AGATTGATCATTACTAGTAT+TGG 0.458939 4.3:-46745265 None:intergenic
GCTAGAAGTCAGGACCAGTT+AGG 0.466887 4.3:+46746952 MS.gene66770:CDS
GCTATCATTGTGATTTCCTT+CGG 0.473387 4.3:-46748797 None:intergenic
GACCTAATATTGACTAGGAA+AGG 0.479292 4.3:-46744892 None:intergenic
GAGAAAGAGAGAACTGAGAA+TGG 0.485779 4.3:+46746598 MS.gene66770:CDS
TTTCTTGCATCTTTGTCACC+TGG 0.487925 4.3:+46748697 MS.gene66770:CDS
TAGTAATGATCAATCTATGA+TGG 0.497650 4.3:+46745272 MS.gene66770:CDS
GTATTGGTAGTAACAGGAAT+AGG 0.498919 4.3:-46745249 None:intergenic
CTGGGACCGAGGAAAGATCT+TGG 0.499892 4.3:+46746628 MS.gene66770:CDS
AAGCATCGAGGTTGCTTCGA+AGG 0.510775 4.3:+46746987 MS.gene66770:CDS
CTAGATCAGAAGAAACCATA+TGG 0.513765 4.3:+46747091 MS.gene66770:CDS
ATGGTGGAGAATTAATGAAA+AGG 0.514995 4.3:+46746731 MS.gene66770:CDS
AATGAGAAAAGCTAGAAGTC+AGG 0.518607 4.3:+46746942 MS.gene66770:CDS
ACTGAGAATGGTGGAGTACT+GGG 0.520142 4.3:+46746610 MS.gene66770:CDS
GTCGTAATCACAACTTATGA+AGG 0.532383 4.3:+46748241 MS.gene66770:CDS
GGTACTACTAATAATTGTGA+AGG 0.533946 4.3:-46748628 None:intergenic
AGTAGTACCAAATATTGCTC+AGG 0.534861 4.3:+46748642 MS.gene66770:CDS
ACCTAATATTGACTAGGAAA+GGG 0.537487 4.3:-46744891 None:intergenic
TGGGACTAAGTTTCAACTCA+AGG 0.537922 4.3:-46744837 None:intergenic
AAAATTTGGATTAGCAGCAA+TGG 0.542627 4.3:-46748677 None:intergenic
AAAGAGAGAACTGAGAATGG+TGG 0.543049 4.3:+46746601 MS.gene66770:CDS
ATGGTGGAGTACTGGGACCG+AGG 0.545279 4.3:+46746617 MS.gene66770:CDS
TTCAAATTTAACAGGTACAA+AGG 0.551833 4.3:+46748200 MS.gene66770:intron
GTGTTTCGAGAAAGTGATGC+TGG 0.554643 4.3:+46746522 MS.gene66770:CDS
CCAATAAAGGAAGTAAGACC+AGG 0.560382 4.3:-46748715 None:intergenic
AATCTATGATGGATGATGGC+AGG 0.562351 4.3:+46745283 MS.gene66770:CDS
ACTTAGTCCCAACGAAAACA+TGG 0.569432 4.3:+46744849 MS.gene66770:CDS
ACTTGAGAATGGTGAAGAGT+TGG 0.570463 4.3:+46746843 MS.gene66770:CDS
AGATCACTAATGGATGTCAA+TGG 0.573212 4.3:+46747206 MS.gene66770:intron
AAAGGACAAGAAATTTCTGA+GGG 0.575843 4.3:+46746679 MS.gene66770:CDS
GATCAATCTATGATGGATGA+TGG 0.576970 4.3:+46745279 MS.gene66770:CDS
AATAACAATGGAAATATCAC+AGG 0.579865 4.3:+46748841 MS.gene66770:CDS
AGCAACAATAATGTCACAGA+AGG 0.584455 4.3:+46748817 MS.gene66770:CDS
TAAAGGACAAGAAATTTCTG+AGG 0.584954 4.3:+46746678 MS.gene66770:CDS
GTTAGTCCTTAGTAAGAATG+TGG 0.588394 4.3:+46747011 MS.gene66770:CDS
GTACTACTAATAATTGTGAA+GGG 0.595394 4.3:-46748627 None:intergenic
ATGATCATTGTCAGGGACAG+AGG 0.601255 4.3:-46745016 None:intergenic
AGCAACAATAATGTCACAGA+AGG 0.601849 4.3:+46748865 MS.gene66770:CDS
GTCGATCCAAGATCTTTCCT+CGG 0.604399 4.3:-46746634 None:intergenic
GTCACAGAAGGCAATAACAA+TGG 0.605929 4.3:+46748829 MS.gene66770:CDS
GATAATAAGATTTAGGACAT+GGG 0.612649 4.3:-46747261 None:intergenic
ATTAACTGGAACTGAAGCCA+TGG 0.614429 4.3:-46744785 None:intergenic
TGGAGGACCTAATATTGACT+AGG 0.620153 4.3:-46744897 None:intergenic
AAGTCAGGACCAGTTAGGAT+CGG 0.622675 4.3:+46746957 MS.gene66770:CDS
TGATAATGTTGAGGCAACAT+TGG 0.625126 4.3:+46747044 MS.gene66770:CDS
TATGAACATGATCATTGTCA+GGG 0.631653 4.3:-46745023 None:intergenic
TGGCTGTTGTAGGTAAAGGG+TGG 0.639471 4.3:-46748273 None:intergenic
TGTTAATGTTGATAATGTTG+AGG 0.644357 4.3:+46747035 MS.gene66770:CDS
TCAGCATCAACATCAAGCAA+TGG 0.645156 4.3:+46748340 MS.gene66770:CDS
AGGTAGAGACAACTTCATGA+TGG 0.652361 4.3:-46744996 None:intergenic
AATATTGACTAGGAAAGGGA+TGG 0.656213 4.3:-46744887 None:intergenic
AATGGCAACAATGTCACCGA+AGG 0.661836 4.3:+46748781 MS.gene66770:CDS
TACTAATGTTGAGACTACGA+TGG 0.681495 4.3:+46746897 MS.gene66770:CDS
AAGGACAAGAAATTTCTGAG+GGG 0.753560 4.3:+46746680 MS.gene66770:CDS
ATCGGCGATGAAAAGCATCG+AGG 0.778036 4.3:+46746975 MS.gene66770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGATTAAATAACA+AGG - chr4.3:46747768-46747787 None:intergenic 10.0%
!! TAATTAAAATACTTATGAAA+TGG + chr4.3:46748144-46748163 MS.gene66770:intron 10.0%
!! TGTATTATACTTATAAATAT+AGG - chr4.3:46745624-46745643 None:intergenic 10.0%
!!! TAATTTTCTCAAATTATTAT+TGG + chr4.3:46746079-46746098 MS.gene66770:intron 10.0%
!!! TTAATATTTTATACCTAATT+TGG + chr4.3:46745959-46745978 MS.gene66770:intron 10.0%
!! GAATACATAAATATTATCTA+TGG - chr4.3:46745702-46745721 None:intergenic 15.0%
!! TAATACAATTCAAATTTAAC+AGG + chr4.3:46748192-46748211 MS.gene66770:intron 15.0%
!! TAATTTCTTTAAATTCATCT+AGG - chr4.3:46745360-46745379 None:intergenic 15.0%
!! TATAACACTATTAATATGAT+GGG + chr4.3:46746253-46746272 MS.gene66770:intron 15.0%
!! TATAATGAGATATTGAATTA+TGG - chr4.3:46745092-46745111 None:intergenic 15.0%
!! TATGGTTGAAAAAATTAAAA+TGG - chr4.3:46745547-46745566 None:intergenic 15.0%
!! TGAATAAATAAATCCAAATT+AGG - chr4.3:46745975-46745994 None:intergenic 15.0%
!! TTATAACACTATTAATATGA+TGG + chr4.3:46746252-46746271 MS.gene66770:intron 15.0%
!!! ATGCATATTTTGATTTTTAA+TGG - chr4.3:46748002-46748021 None:intergenic 15.0%
!!! ATTTCATATTTTACTTTTCT+AGG + chr4.3:46745997-46746016 MS.gene66770:intron 15.0%
!!! TAGAATATTTTTATGTGATT+TGG + chr4.3:46746159-46746178 MS.gene66770:intron 15.0%
!! AAAATAAATGACAACTCTAA+TGG - chr4.3:46745665-46745684 None:intergenic 20.0%
!! AATATATTCTTTAAGCCAAA+AGG - chr4.3:46747175-46747194 None:intergenic 20.0%
!! ATAACACTATTAATATGATG+GGG + chr4.3:46746254-46746273 MS.gene66770:intron 20.0%
!! TAAAATGTAACCATATGTAT+TGG - chr4.3:46746054-46746073 None:intergenic 20.0%
!! TAAATCTTATTATCGAAAAC+AGG + chr4.3:46747270-46747289 MS.gene66770:CDS 20.0%
!! TCATATATGTTAATTGATGT+AGG + chr4.3:46745826-46745845 MS.gene66770:intron 20.0%
!! TTCATATTCATTAATTAACG+TGG - chr4.3:46745793-46745812 None:intergenic 20.0%
!!! AAAGGAAAAGAAGTTTTTAA+TGG + chr4.3:46746799-46746818 MS.gene66770:CDS 20.0%
!!! AACAATGTCAAAATCTTTTT+TGG + chr4.3:46748892-46748911 MS.gene66770:CDS 20.0%
!!! AATTTTGATTGGTTTTGATT+AGG - chr4.3:46748574-46748593 None:intergenic 20.0%
!!! ATATTTTTTTCCCAAATAAG+AGG - chr4.3:46746187-46746206 None:intergenic 20.0%
!!! ATTTTTTTGTCTTCTGAATT+AGG - chr4.3:46745312-46745331 None:intergenic 20.0%
!!! TGTTTTCGATAATAAGATTT+AGG - chr4.3:46747271-46747290 None:intergenic 20.0%
! AAAAGGAAATTTATTGATGC+TGG + chr4.3:46746748-46746767 MS.gene66770:CDS 25.0%
! AATAACAATGGAAATATCAC+AGG + chr4.3:46748841-46748860 MS.gene66770:CDS 25.0%
! AATAAGGTTAAGGAAGTTAA+AGG + chr4.3:46746781-46746800 MS.gene66770:CDS 25.0%
! AATAGAGTTCGATTTCTTTA+AGG + chr4.3:46744960-46744979 MS.gene66770:CDS 25.0%
! AATATGGTTAAGGAAGTTAA+AGG + chr4.3:46746661-46746680 MS.gene66770:CDS 25.0%
! ACATGTGAATAAAACATGTT+AGG - chr4.3:46746344-46746363 None:intergenic 25.0%
! AGAAGACAAAAAAATCAAGA+GGG + chr4.3:46745317-46745336 MS.gene66770:CDS 25.0%
! AGATTGATCATTACTAGTAT+TGG - chr4.3:46745268-46745287 None:intergenic 25.0%
! ATTGACTACTAATAAGGTTA+AGG + chr4.3:46746771-46746790 MS.gene66770:CDS 25.0%
! CATAAGTTTAAGGAAGTTAA+AGG + chr4.3:46746547-46746566 MS.gene66770:CDS 25.0%
! CATGTGAATAAAACATGTTA+GGG - chr4.3:46746343-46746362 None:intergenic 25.0%
! GTACTACTAATAATTGTGAA+GGG - chr4.3:46748630-46748649 None:intergenic 25.0%
! GTATAATCAAGTGTAATAGT+TGG - chr4.3:46748451-46748470 None:intergenic 25.0%
! TAGTAATGATCAATCTATGA+TGG + chr4.3:46745272-46745291 MS.gene66770:CDS 25.0%
! TATGAATACACCATCTTTAT+TGG + chr4.3:46745044-46745063 MS.gene66770:intron 25.0%
! TCAAAATATGCATTGAAGTT+TGG + chr4.3:46748009-46748028 MS.gene66770:intron 25.0%
! TCAACCATATATATGTTTCT+TGG + chr4.3:46745558-46745577 MS.gene66770:intron 25.0%
! TTAACGTGGTAATATAACAT+TGG - chr4.3:46745779-46745798 None:intergenic 25.0%
! TTATTGTGTTAGATCACTAA+TGG + chr4.3:46747196-46747215 MS.gene66770:intron 25.0%
! TTCAAATTTAACAGGTACAA+AGG + chr4.3:46748200-46748219 MS.gene66770:intron 25.0%
!! CAAAACCAATCAAAATTTTC+TGG + chr4.3:46748577-46748596 MS.gene66770:intron 25.0%
!! CTTTAACTTCCTTAAACTTA+TGG - chr4.3:46746549-46746568 None:intergenic 25.0%
!! GATAATAAGATTTAGGACAT+GGG - chr4.3:46747264-46747283 None:intergenic 25.0%
!! GGAAAATAGTTGTTATTAAC+TGG - chr4.3:46744802-46744821 None:intergenic 25.0%
!!! TATTTTTTTCTTCAACAGCT+TGG + chr4.3:46745225-46745244 MS.gene66770:intron 25.0%
!!! TGTTAATGTTGATAATGTTG+AGG + chr4.3:46747035-46747054 MS.gene66770:CDS 25.0%
AAAAAGAGAATGAAGAATGG+TGG + chr4.3:46746715-46746734 MS.gene66770:CDS 30.0%
AAAGGAAAAGAAGTCTTTGA+TGG + chr4.3:46746565-46746584 MS.gene66770:CDS 30.0%
AAAGGACAAGAAATTTCTGA+GGG + chr4.3:46746679-46746698 MS.gene66770:CDS 30.0%
AAATACTTGAAGAACAAGGA+AGG - chr4.3:46748402-46748421 None:intergenic 30.0%
AAGAAAAAGAGACTTGAGAA+TGG + chr4.3:46746832-46746851 MS.gene66770:CDS 30.0%
AATCTTCAAATACTCCACAA+AGG + chr4.3:46748473-46748492 MS.gene66770:intron 30.0%
ACCCATATAGACTACAATAT+GGG + chr4.3:46745506-46745525 MS.gene66770:intron 30.0%
ATAATGTGAAAGCAATCACT+AGG - chr4.3:46747617-46747636 None:intergenic 30.0%
ATATGAACATGATCATTGTC+AGG - chr4.3:46745027-46745046 None:intergenic 30.0%
ATCATCACAAAAAACAGCTT+TGG - chr4.3:46746375-46746394 None:intergenic 30.0%
ATCGACTACTAATATGGTTA+AGG + chr4.3:46746651-46746670 MS.gene66770:CDS 30.0%
CAAATGTCAAAATATGCAGA+TGG + chr4.3:46748604-46748623 MS.gene66770:intron 30.0%
CAACAAACTCAAATCGAAAA+TGG + chr4.3:46748105-46748124 MS.gene66770:intron 30.0%
CAGAAAAAGAGAATGAAGAA+TGG + chr4.3:46746712-46746731 MS.gene66770:CDS 30.0%
CAGAAGACAAAAAAATCAAG+AGG + chr4.3:46745316-46745335 MS.gene66770:CDS 30.0%
CCAACAAATACAAAATGCAT+TGG - chr4.3:46746281-46746300 None:intergenic 30.0%
CCAACCAAGAAACATATATA+TGG - chr4.3:46745565-46745584 None:intergenic 30.0%
CCATATATATGTTTCTTGGT+TGG + chr4.3:46745562-46745581 MS.gene66770:intron 30.0%
GACAAAGATGCAAGAAAATT+TGG - chr4.3:46748694-46748713 None:intergenic 30.0%
GGTACTACTAATAATTGTGA+AGG - chr4.3:46748631-46748650 None:intergenic 30.0%
GTACACTTTAACATACCATA+TGG - chr4.3:46747109-46747128 None:intergenic 30.0%
GTTGAAATACTTGAAGAACA+AGG - chr4.3:46748406-46748425 None:intergenic 30.0%
TAAAGGACAAGAAATTTCTG+AGG + chr4.3:46746678-46746697 MS.gene66770:CDS 30.0%
TAACATCCACATTCTTACTA+AGG - chr4.3:46747020-46747039 None:intergenic 30.0%
TAATGTGAAAGCAATCACTA+GGG - chr4.3:46747616-46747635 None:intergenic 30.0%
TAGACACTCTTTAGATTTGA+AGG + chr4.3:46745445-46745464 MS.gene66770:intron 30.0%
TATGAACATGATCATTGTCA+GGG - chr4.3:46745026-46745045 None:intergenic 30.0%
TCTAAGAGATTAAAGGAGTT+TGG - chr4.3:46748513-46748532 None:intergenic 30.0%
TTATCTATGGTTGAAATCAG+AGG - chr4.3:46745689-46745708 None:intergenic 30.0%
TTTGACTCAGTAAAACGAAA+GGG - chr4.3:46745402-46745421 None:intergenic 30.0%
! AACCATATGTATTGGTGATT+CGG - chr4.3:46746046-46746065 None:intergenic 30.0%
! ACCTAATATTGACTAGGAAA+GGG - chr4.3:46744894-46744913 None:intergenic 30.0%
! AGCTTTAGTTCCAATAAAGA+TGG - chr4.3:46745057-46745076 None:intergenic 30.0%
! ATGGTGGAGAATTAATGAAA+AGG + chr4.3:46746731-46746750 MS.gene66770:CDS 30.0%
! CATGTTTCTATGCTAGAAAA+TGG + chr4.3:46747920-46747939 MS.gene66770:intron 30.0%
! CCAATGCATTTTGTATTTGT+TGG + chr4.3:46746278-46746297 MS.gene66770:intron 30.0%
! CGATAATAAGATTTAGGACA+TGG - chr4.3:46747265-46747284 None:intergenic 30.0%
! GCTTTTACTGATAGTAACAA+TGG + chr4.3:46748763-46748782 MS.gene66770:CDS 30.0%
! GTAAAAGCAATGTTGTTGTT+TGG - chr4.3:46748751-46748770 None:intergenic 30.0%
! TAAATGCATGGATTGTGAAA+TGG - chr4.3:46747959-46747978 None:intergenic 30.0%
! TCTATGCTAGAAAATGGATT+TGG + chr4.3:46747926-46747945 MS.gene66770:intron 30.0%
! TGATTTGGATCCTCTTATTT+GGG + chr4.3:46746174-46746193 MS.gene66770:intron 30.0%
! TTTTTGTCTTCTGAATTAGG+TGG - chr4.3:46745309-46745328 None:intergenic 30.0%
!! AAAATTTGGATTAGCAGCAA+TGG - chr4.3:46748680-46748699 None:intergenic 30.0%
!! AACGTAGGGAGTATTTATTA+AGG + chr4.3:46747574-46747593 MS.gene66770:intron 30.0%
!! AGAAACATGAGCTTTGAAAA+TGG - chr4.3:46747909-46747928 None:intergenic 30.0%
!! ATGTTTTATTCACATGTGAG+AGG + chr4.3:46746347-46746366 MS.gene66770:intron 30.0%
!! GTAGTCCAGAAAATTTTGAT+TGG - chr4.3:46748585-46748604 None:intergenic 30.0%
!! TCTTTAGATTTGAAGGTGTT+TGG + chr4.3:46745452-46745471 MS.gene66770:intron 30.0%
!! TTACTAGTATTGGTAGTAAC+AGG - chr4.3:46745258-46745277 None:intergenic 30.0%
!! TTGCGACATGTATTTTGAAA+CGG - chr4.3:46747336-46747355 None:intergenic 30.0%
!! TTTTGACTCAGTAAAACGAA+AGG - chr4.3:46745403-46745422 None:intergenic 30.0%
!!! AGTTGTTTTTGCCATTTCTT+TGG - chr4.3:46748296-46748315 None:intergenic 30.0%
!!! ATGATAACTTGTTGTCCTTT+TGG + chr4.3:46747157-46747176 MS.gene66770:intron 30.0%
!!! GACATGTATTTTGAAACGTA+GGG + chr4.3:46747560-46747579 MS.gene66770:intron 30.0%
!!! GGTTTTGATTAGGTATTTGA+GGG - chr4.3:46748564-46748583 None:intergenic 30.0%
!!! GTCAGTTTTATTGTTTTGTC+CGG + chr4.3:46746112-46746131 MS.gene66770:intron 30.0%
!!! TGGTTTTGATTAGGTATTTG+AGG - chr4.3:46748565-46748584 None:intergenic 30.0%
AAGGACAAGAAATTTCTGAG+GGG + chr4.3:46746680-46746699 MS.gene66770:CDS 35.0%
AATGAGAAAAGCTAGAAGTC+AGG + chr4.3:46746942-46746961 MS.gene66770:CDS 35.0%
ACAGACATACACATAAACAC+CGG - chr4.3:46746134-46746153 None:intergenic 35.0%
ACAGTGATCTAGGAAACATT+CGG - chr4.3:46747723-46747742 None:intergenic 35.0%
AGACAAAAAAATCAAGAGGG+AGG + chr4.3:46745320-46745339 MS.gene66770:CDS 35.0%
AGCAACAATAATGTCACAGA+AGG + chr4.3:46748817-46748836 MS.gene66770:CDS 35.0%
AGTAGTACCAAATATTGCTC+AGG + chr4.3:46748642-46748661 MS.gene66770:CDS 35.0%
ATACTTACTACGTGAATGCT+TGG + chr4.3:46748070-46748089 MS.gene66770:intron 35.0%
CACCCATATAGACTACAATA+TGG + chr4.3:46745505-46745524 MS.gene66770:intron 35.0%
CTAGATCAGAAGAAACCATA+TGG + chr4.3:46747091-46747110 MS.gene66770:CDS 35.0%
CTTGTTTCATGAGATGAGAT+TGG - chr4.3:46744940-46744959 None:intergenic 35.0%
GCCCATATTGTAGTCTATAT+GGG - chr4.3:46745510-46745529 None:intergenic 35.0%
GCTATCATTGTGATTTCCTT+CGG - chr4.3:46748800-46748819 None:intergenic 35.0%
GTCGTAATCACAACTTATGA+AGG + chr4.3:46748241-46748260 MS.gene66770:CDS 35.0%
GTTAGTCCTTAGTAAGAATG+TGG + chr4.3:46747011-46747030 MS.gene66770:CDS 35.0%
TAAAATGGAAGTGAGAGTCT+TGG - chr4.3:46745532-46745551 None:intergenic 35.0%
TACCGAATCACCAATACATA+TGG + chr4.3:46746041-46746060 MS.gene66770:intron 35.0%
TACTAATGTTGAGACTACGA+TGG + chr4.3:46746897-46746916 MS.gene66770:CDS 35.0%
TATGGACAAAAACTGTCGAA+AGG + chr4.3:46747235-46747254 MS.gene66770:CDS 35.0%
TATTTGATATGCATTGCACG+AGG + chr4.3:46747849-46747868 MS.gene66770:intron 35.0%
TCCCTTTCCTAGTCAATATT+AGG + chr4.3:46744890-46744909 MS.gene66770:CDS 35.0%
TCTTGGATCGACTACTAATA+TGG + chr4.3:46746645-46746664 MS.gene66770:CDS 35.0%
TGCTGGATTGACTACTAATA+AGG + chr4.3:46746765-46746784 MS.gene66770:CDS 35.0%
TTAACTGCCTGAGCAATATT+TGG - chr4.3:46748652-46748671 None:intergenic 35.0%
TTTCAGATGGCTATTCTTCA+AGG + chr4.3:46746415-46746434 MS.gene66770:intron 35.0%
! AATATTGACTAGGAAAGGGA+TGG - chr4.3:46744890-46744909 None:intergenic 35.0%
! AGATCACTAATGGATGTCAA+TGG + chr4.3:46747206-46747225 MS.gene66770:intron 35.0%
! GAAATTTCTGAGGGGAAATT+TGG + chr4.3:46746688-46746707 MS.gene66770:CDS 35.0%
! GACCTAATATTGACTAGGAA+AGG - chr4.3:46744895-46744914 None:intergenic 35.0%
! GCAGAACTCTAAGAGATTAA+AGG - chr4.3:46748520-46748539 None:intergenic 35.0%
! GTATTGGTAGTAACAGGAAT+AGG - chr4.3:46745252-46745271 None:intergenic 35.0%
! GTGATTTGGATCCTCTTATT+TGG + chr4.3:46746173-46746192 MS.gene66770:intron 35.0%
! TGATAATGTTGAGGCAACAT+TGG + chr4.3:46747044-46747063 MS.gene66770:CDS 35.0%
! TGTGATGATGTTTGAACTCT+TGG + chr4.3:46746386-46746405 MS.gene66770:intron 35.0%
!! GATCAATCTATGATGGATGA+TGG + chr4.3:46745279-46745298 MS.gene66770:CDS 35.0%
!!! AGAGATTTGGTTTTCATTGG+AGG - chr4.3:46744917-46744936 None:intergenic 35.0%
!!! CGACATGTATTTTGAAACGT+AGG + chr4.3:46747559-46747578 MS.gene66770:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr4.3:46747332-46747351 None:intergenic 35.0%
!!! TCTAGCTTTTCTCATTGATG+AGG - chr4.3:46746938-46746957 None:intergenic 35.0%
!!! TGGAGAGATTTGGTTTTCAT+TGG - chr4.3:46744920-46744939 None:intergenic 35.0%
AAAGAGAGAACTGAGAATGG+TGG + chr4.3:46746601-46746620 MS.gene66770:CDS 40.0%
ACCTACAACAGCCAAAGAAA+TGG + chr4.3:46748282-46748301 MS.gene66770:CDS 40.0%
ACTTAGTCCCAACGAAAACA+TGG + chr4.3:46744849-46744868 MS.gene66770:CDS 40.0%
ACTTGAGAATGGTGAAGAGT+TGG + chr4.3:46746843-46746862 MS.gene66770:CDS 40.0%
AGGTAGAGACAACTTCATGA+TGG - chr4.3:46744999-46745018 None:intergenic 40.0%
ATGGTAGTTGGATCGAAGAT+TGG - chr4.3:46748040-46748059 None:intergenic 40.0%
CCAATAAAGGAAGTAAGACC+AGG - chr4.3:46748718-46748737 None:intergenic 40.0%
CGAGCTTGAACGAAAGAAAA+TGG + chr4.3:46746438-46746457 MS.gene66770:CDS 40.0%
CTTTGGCTGTTGTAGGTAAA+GGG - chr4.3:46748279-46748298 None:intergenic 40.0%
GAGAAAGAGAGAACTGAGAA+TGG + chr4.3:46746598-46746617 MS.gene66770:CDS 40.0%
GAGATGAGATTGGAGAGATT+TGG - chr4.3:46744930-46744949 None:intergenic 40.0%
GATGCTGGACCATAAGTTTA+AGG + chr4.3:46746537-46746556 MS.gene66770:CDS 40.0%
GGATGTCAATGGAGAAAGTA+TGG + chr4.3:46747217-46747236 MS.gene66770:CDS 40.0%
GGCCCATATTGTAGTCTATA+TGG - chr4.3:46745511-46745530 None:intergenic 40.0%
GTCACAGAAGGCAATAACAA+TGG + chr4.3:46748829-46748848 MS.gene66770:CDS 40.0%
TCAAGGTTGTTAGTGTCTTC+AGG - chr4.3:46744823-46744842 None:intergenic 40.0%
TCAGCATCAACATCAAGCAA+TGG + chr4.3:46748340-46748359 MS.gene66770:CDS 40.0%
TCTTTGGCTGTTGTAGGTAA+AGG - chr4.3:46748280-46748299 None:intergenic 40.0%
TGGCTGAGTATGACCAATAA+AGG - chr4.3:46748731-46748750 None:intergenic 40.0%
TGGGACTAAGTTTCAACTCA+AGG - chr4.3:46744840-46744859 None:intergenic 40.0%
TTTAATGGCCATCAACGTGA+TGG - chr4.3:46747987-46748006 None:intergenic 40.0%
TTTCTTGCATCTTTGTCACC+TGG + chr4.3:46748697-46748716 MS.gene66770:CDS 40.0%
! AAAGGAGTTTGGAACTGATC+TGG - chr4.3:46748502-46748521 None:intergenic 40.0%
! AAGGAGTTTGGAACTGATCT+GGG - chr4.3:46748501-46748520 None:intergenic 40.0%
! CATGTTTCTGACAGTGATCT+AGG - chr4.3:46747733-46747752 None:intergenic 40.0%
! CTCTTGGAACTGTTTTCAGA+TGG + chr4.3:46746402-46746421 MS.gene66770:intron 40.0%
! TGGAGGACCTAATATTGACT+AGG - chr4.3:46744900-46744919 None:intergenic 40.0%
!! AATCTATGATGGATGATGGC+AGG + chr4.3:46745283-46745302 MS.gene66770:CDS 40.0%
!! ATTGGTGATTCGGTATCGTA+TGG - chr4.3:46746036-46746055 None:intergenic 40.0%
!! CCTGGTCTTACTTCCTTTAT+TGG + chr4.3:46748715-46748734 MS.gene66770:CDS 40.0%
!! GAAGCATCCATGTTTTCGTT+GGG - chr4.3:46744859-46744878 None:intergenic 40.0%
!! TGAAGCATCCATGTTTTCGT+TGG - chr4.3:46744860-46744879 None:intergenic 40.0%
!! TTCTTGGTTGGTTTGACTTG+TGG + chr4.3:46745574-46745593 MS.gene66770:intron 40.0%
!! TTGGTGATTCGGTATCGTAT+GGG - chr4.3:46746035-46746054 None:intergenic 40.0%
!!! CGACATGTATTTTGAAACGG+AGG - chr4.3:46747333-46747352 None:intergenic 40.0%
AACTGATCTGGGTTCCTTTG+TGG - chr4.3:46748490-46748509 None:intergenic 45.0%
AAGTCAGGACCAGTTAGGAT+CGG + chr4.3:46746957-46746976 MS.gene66770:CDS 45.0%
AGTAAGTATGTCGACGTCGA+TGG - chr4.3:46748059-46748078 None:intergenic 45.0%
ATGATCATTGTCAGGGACAG+AGG - chr4.3:46745019-46745038 None:intergenic 45.0%
CTATATGGGTGTGTCTCTGT+GGG - chr4.3:46745496-46745515 None:intergenic 45.0%
GAAAATGGTAGCTGCTAGCT+TGG + chr4.3:46748120-46748139 MS.gene66770:intron 45.0%
GCATCAACATCAAGCAATGG+TGG + chr4.3:46748343-46748362 MS.gene66770:intron 45.0%
GCCATTTCTTTGGCTGTTGT+AGG - chr4.3:46748286-46748305 None:intergenic 45.0%
GTAATAGTTGGAAACGACGC+AGG - chr4.3:46748439-46748458 None:intergenic 45.0%
GTATCGTATGGGTGCAATGA+CGG - chr4.3:46746024-46746043 None:intergenic 45.0%
GTCGATCCAAGATCTTTCCT+CGG - chr4.3:46746637-46746656 None:intergenic 45.0%
GTGTTTCGAGAAAGTGATGC+TGG + chr4.3:46746522-46746541 MS.gene66770:CDS 45.0%
TCTATATGGGTGTGTCTCTG+TGG - chr4.3:46745497-46745516 None:intergenic 45.0%
TGATATGCATTGCACGAGGT+TGG + chr4.3:46747853-46747872 MS.gene66770:intron 45.0%
TTACGCATCCATCACGTTGA+TGG + chr4.3:46747976-46747995 MS.gene66770:intron 45.0%
TTGAGGGATCAAAGAAGCTG+AGG - chr4.3:46748548-46748567 None:intergenic 45.0%
! AACTGAGAATGGTGGAGTAC+TGG + chr4.3:46746609-46746628 MS.gene66770:CDS 45.0%
! ACTGAGAATGGTGGAGTACT+GGG + chr4.3:46746610-46746629 MS.gene66770:CDS 45.0%
! GTGTATTGACATGTGTGCAG+TGG + chr4.3:46747529-46747548 MS.gene66770:intron 45.0%
! TTTTCATCGCCGATCCTAAC+TGG - chr4.3:46746969-46746988 None:intergenic 45.0%
!! GTGATGGATGCGTAAATGCA+TGG - chr4.3:46747971-46747990 None:intergenic 45.0%
!! ATATATTAGTTAAAAAAATA+TGG - chr4.3:46747395-46747414 None:intergenic 5.0%
!! TATATAATTAAAGATATTAA+TGG + chr4.3:46747498-46747517 MS.gene66770:intron 5.0%
ATGTCGACGTCGATGGTAGT+TGG - chr4.3:46748052-46748071 None:intergenic 50.0%
GCTAGAAGTCAGGACCAGTT+AGG + chr4.3:46746952-46746971 MS.gene66770:CDS 50.0%
TGGCTGTTGTAGGTAAAGGG+TGG - chr4.3:46748276-46748295 None:intergenic 50.0%
!! AAGCATCGAGGTTGCTTCGA+AGG + chr4.3:46746987-46747006 MS.gene66770:CDS 50.0%
!! ACAAGGAAGGAGTGCTCTTG+TGG - chr4.3:46748389-46748408 None:intergenic 50.0%
!! ATCGGCGATGAAAAGCATCG+AGG + chr4.3:46746975-46746994 MS.gene66770:CDS 50.0%
!! CAAGGAAGGAGTGCTCTTGT+GGG - chr4.3:46748388-46748407 None:intergenic 50.0%
CTGGGACCGAGGAAAGATCT+TGG + chr4.3:46746628-46746647 MS.gene66770:CDS 55.0%
!! ATGGTGGAGTACTGGGACCG+AGG + chr4.3:46746617-46746636 MS.gene66770:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 46744787 46748927 46744787 ID=MS.gene66770
chr4.3 mRNA 46744787 46748927 46744787 ID=MS.gene66770.t1;Parent=MS.gene66770
chr4.3 exon 46744787 46745038 46744787 ID=MS.gene66770.t1.exon1;Parent=MS.gene66770.t1
chr4.3 CDS 46744787 46745038 46744787 ID=cds.MS.gene66770.t1;Parent=MS.gene66770.t1
chr4.3 exon 46745243 46745341 46745243 ID=MS.gene66770.t1.exon2;Parent=MS.gene66770.t1
chr4.3 CDS 46745243 46745341 46745243 ID=cds.MS.gene66770.t1;Parent=MS.gene66770.t1
chr4.3 exon 46746421 46747116 46746421 ID=MS.gene66770.t1.exon3;Parent=MS.gene66770.t1
chr4.3 CDS 46746421 46747116 46746421 ID=cds.MS.gene66770.t1;Parent=MS.gene66770.t1
chr4.3 exon 46747208 46747291 46747208 ID=MS.gene66770.t1.exon4;Parent=MS.gene66770.t1
chr4.3 CDS 46747208 46747291 46747208 ID=cds.MS.gene66770.t1;Parent=MS.gene66770.t1
chr4.3 exon 46748214 46748361 46748214 ID=MS.gene66770.t1.exon5;Parent=MS.gene66770.t1
chr4.3 CDS 46748214 46748361 46748214 ID=cds.MS.gene66770.t1;Parent=MS.gene66770.t1
chr4.3 exon 46748623 46748927 46748623 ID=MS.gene66770.t1.exon6;Parent=MS.gene66770.t1
chr4.3 CDS 46748623 46748927 46748623 ID=cds.MS.gene66770.t1;Parent=MS.gene66770.t1
Gene Sequence

>MS.gene66770

ATGGCTTCAGTTCCAGTTAATAACAACTATTTTCCTGAAGACACTAACAACCTTGAGTTGAAACTTAGTCCCAACGAAAACATGGATGCTTCACATAGTACCATCCCTTTCCTAGTCAATATTAGGTCCTCCAATGAAAACCAAATCTCTCCAATCTCATCTCATGAAACAAGAATAGAGTTCGATTTCTTTAAGGACAACAACAATGACCATCATGAAGTTGTCTCTACCTCTGTCCCTGACAATGATCATGTTCATATGAATACACCATCTTTATTGGAACTAAAGCTAAGCATGAGTGACCATAATTCAATATCTCATTATAGATTTTTTTACTGATTATATATATATATAGTTTTTAAATTTCATAGCTTTTGAATTTATAATCGTAAACAATCATTTATTTTTTATGATCATCTTGTTAATTTGATGAATATGTATTTTTTTCTTCAACAGCTTGGTCCTATTCCTGTTACTACCAATACTAGTAATGATCAATCTATGATGGATGATGGCAGGCCACCTAATTCAGAAGACAAAAAAATCAAGAGGGAGGTAATGTTATTAACACCTAGATGAATTTAAAGAAATTATACTCGATGAACATTTTTTCCCTTTCGTTTTACTGAGTCAAAATTGAGTGATTTTATATGTAGCATAGACACTCTTTAGATTTGAAGGTGTTTGGACTCGTCAATGTGTGACACCCACAGAGACACACCCATATAGACTACAATATGGGCCAAGACTCTCACTTCCATTTTAATTTTTTCAACCATATATATGTTTCTTGGTTGGTTTGACTTGTGGTTTTGATCTCTTACTCTTCTTTGACCTATATTTATAAGTATAATACAATATAATGATGTATATAACCATTAGAGTTGTCATTTATTTTTCCTCTGATTTCAACCATAGATAATATTTATGTATTCATATTGAGTTTAACTAATATGTTTTGTCAATGTACAATTATTTTATACATGTATCCAATGTTATATTACCACGTTAATTAATGAATATGAAAAATTATGTGTATTCATATATGTTAATTGATGTAGGAGCACATCATTAAATGAATGTGTAAAATAATTGTTTATTTATAAAGTATGCTAATTAAATTTTTTCATATTTTACTTTTCTTTTATTTGATTTTTTTAAACATACATTGTTTAATATTTTATACCTAATTTGGATTTATTTATTCATTATTTCATATTTTACTTTTCTAGGTCCGTCATTGCACCCATACGATACCGAATCACCAATACATATGGTTACATTTTATTGTTTAATTTTCTCAAATTATTATTGGTTGTTGACGTGTCAGTTTTATTGTTTTGTCCGGTGTTTATGTGTATGTCTGTGTTTATAGAATATTTTTATGTGATTTGGATCCTCTTATTTGGGAAAAAAATATGAGTGAGTTATGTTAATGATCTCAACGTTAAAATGCATTGCACTCTTATAACACTATTAATATGATGGGGTCCAATGCATTTTGTATTTGTTGGATAATCAAATTCAATTTAATAGTGAGATGATTATTATAACCCTAACATGTTTTATTCACATGTGAGAGGATCCAAAGCTGTTTTTTGTGATGATGTTTGAACTCTTGGAACTGTTTTCAGATGGCTATTCTTCAAGGCGAGCTTGAACGAAAGAAAATGGAGAACTATAGATTAAAATTGATGTATGATCAGCTTAGAACAGATTACAATAACATGCAGATGTGTTTCGAGAAAGTGATGCTGGACCATAAGTTTAAGGAAGTTAAAGGAAAAGAAGTCTTTGATGGAAAATTTAAAGAGAAAGAGAGAACTGAGAATGGTGGAGTACTGGGACCGAGGAAAGATCTTGGATCGACTACTAATATGGTTAAGGAAGTTAAAGGACAAGAAATTTCTGAGGGGAAATTTGGACAGAAAAAGAGAATGAAGAATGGTGGAGAATTAATGAAAAGGAAATTTATTGATGCTGGATTGACTACTAATAAGGTTAAGGAAGTTAAAGGAAAAGAAGTTTTTAATGGAAAATGTGAAAAGAAAAAGAGACTTGAGAATGGTGAAGAGTTGGTGTCAAAGAAATGCAAAGATCTTGTGTTGCTTACTAATGTTGAGACTACGATGGATCATGAAGCTTGTTCCTCATCAATGAGAAAAGCTAGAAGTCAGGACCAGTTAGGATCGGCGATGAAAAGCATCGAGGTTGCTTCGAAGGAGTTAGTCCTTAGTAAGAATGTGGATGTTAATGTTGATAATGTTGAGGCAACATTGGTGAAAGCAAGAGTCTCTATTAGAGCTAGATCAGAAGAAACCATATGGTATGTTAAAGTGTACATTGACTTTCAACATTGTAAGTTTTTATATGATAACTTGTTGTCCTTTTGGCTTAAAGAATATATTTTTATTGTGTTAGATCACTAATGGATGTCAATGGAGAAAGTATGGACAAAAACTGTCGAAAGGAAACCCATGTCCTAAATCTTATTATCGAAAACAGGTAACTTTCTTCTATAATTATCGAAATTACATGTACTCCCTCCGTTTCAAAATACATGTCGCAATTTTACAATGTGCACTATTCACATAGCTTACTTTGACCATATTTTTTTAACTAATATATAAATACAAATAATAACATGTAAGATGTTTTTTTATTTGTTTTGACGAATATTTTCAAAATATCAAATTTTTATAATTTTCTATTATATAATTAAAGATATTAATGGTCAAAGTTGTGTATTGACATGTGTGCAGTGGTTGACTGCGACATGTATTTTGAAACGTAGGGAGTATTTATTAAGGTTTTAAATTTATGTCACCCTAGTGATTGCTTTCACATTATTATATTTAATATTGTACATAATTACAGTCAAATATGATTTATACAACGTCAACTGCATTAAATTTGCAACGACATTAAACTCTCCGAATGTTTCCTAGATCACTGTCAGAAACATGCATATTTTAAAACCTTGTTATTTAATCATTATTTTATGTATATTTTCAATTAATTACAAAATAACTCTACATACATAAACATTATTAGTGATTATTTATTTGATATGCATTGCACGAGGTTGGATAACAATATAATTTAATTCAAATGTGTTTCCATTTTCAAAGCTCATGTTTCTATGCTAGAAAATGGATTTGGATTTGCTCCATTTCACAATCCATGCATTTACGCATCCATCACGTTGATGGCCATTAAAAATCAAAATATGCATTGAAGTTTGGATCATCCAATCTTCGATCCAACTACCATCGACGTCGACATACTTACTACGTGAATGCTTGGATTCGCTGAATGCAACAAACTCAAATCGAAAATGGTAGCTGCTAGCTTGGTTAATTAAAATACTTATGAAATGGTCTGTATTGCAATGACAATATTATTTAATACAATTCAAATTTAACAGGTACAAAGGTGTGCTCTTGACAAAACAGTCGTAATCACAACTTATGAAGGAAATGACAGCCACCCTTTACCTACAACAGCCAAAGAAATGGCAAAAACAACTTCAGCAGCTGCAAAGATGCTTCTTTCAGCATCAACATCAAGCAATGGTGGACAATTGAATAAAAATTTACCCACAAGAGCACTCCTTCCTTGTTCTTCAAGTATTTCAACTATCTCAGCTCCTGCGTCGTTTCCAACTATTACACTTGATTATACTCAATCTTCAAATACTCCACAAAGGAACCCAGATCAGTTCCAAACTCCTTTAATCTCTTAGAGTTCTGCAAATTCCTCAGCTTCTTTGATCCCTCAAATACCTAATCAAAACCAATCAAAATTTTCTGGACTACAAATGTCAAAATATGCAGATGGCCCTTCACAATTATTAGTAGTACCAAATATTGCTCAGGCAGTTAATGCTGCCATTGCTGCTAATCCAAATTTTCTTGCATCTTTGTCACCTGGTCTTACTTCCTTTATTGGTCATACTCAGCCAAACAACAACATTGCTTTTACTGATAGTAACAATGGCAACAATGTCACCGAAGGAAATCACAATGATAGCAACAATAATGTCACAGAAGGCAATAACAATGGAAATATCACAGGTAGCAACAATAATGTCACAGAAGGCAATAACAATGTCAAAATCTTTTTTGGCTCAAAGATTTAG
Protein sequence

>MS.gene66770.t1

MASVPVNNNYFPEDTNNLELKLSPNENMDASHSTIPFLVNIRSSNENQISPISSHETRIEFDFFKDNNNDHHEVVSTSVPDNDHLGPIPVTTNTSNDQSMMDDGRPPNSEDKKIKREMAILQGELERKKMENYRLKLMYDQLRTDYNNMQMCFEKVMLDHKFKEVKGKEVFDGKFKEKERTENGGVLGPRKDLGSTTNMVKEVKGQEISEGKFGQKKRMKNGGELMKRKFIDAGLTTNKVKEVKGKEVFNGKCEKKKRLENGEELVSKKCKDLVLLTNVETTMDHEACSSSMRKARSQDQLGSAMKSIEVASKELVLSKNVDVNVDNVEATLVKARVSIRARSEETIWYITNGCQWRKYGQKLSKGNPCPKSYYRKQVQRCALDKTVVITTYEGNDSHPLPTTAKEMAKTTSAAAKMLLSASTSSNDGPSQLLVVPNIAQAVNAAIAANPNFLASLSPGLTSFIGHTQPNNNIAFTDSNNGNNVTEGNHNDSNNNVTEGNNNGNITGSNNNVTEGNNNVKIFFGSKI