AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67103

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67103.t1 MTR_1g019820 80.687 233 25 4 98 330 5 217 7.65e-124 354
MS.gene67103.t1 MTR_1g045470 53.372 341 111 10 1 323 1 311 2.27e-104 309
MS.gene67103.t1 MTR_7g116460 70.000 210 48 2 1 203 1 202 5.87e-97 285
MS.gene67103.t1 MTR_1g053575 45.634 355 115 9 1 323 1 309 6.68e-90 272
MS.gene67103.t1 MTR_7g100990 33.758 157 89 5 11 159 17 166 3.55e-17 81.3
MS.gene67103.t1 MTR_7g005280 31.481 162 99 4 11 170 21 172 3.28e-15 74.7
MS.gene67103.t1 MTR_8g099750 32.278 158 81 5 11 155 20 164 8.60e-13 67.4
MS.gene67103.t1 MTR_2g093810 28.326 233 125 9 11 209 20 244 1.06e-11 65.1
MS.gene67103.t1 MTR_3g109340 26.562 192 127 6 11 195 28 212 1.88e-11 64.7
MS.gene67103.t1 MTR_7g085220 30.233 172 98 7 11 167 14 178 2.92e-11 63.9
MS.gene67103.t1 MTR_4g089135 33.333 129 77 4 11 137 21 142 2.92e-11 63.9
MS.gene67103.t1 MTR_3g096140 31.875 160 96 8 11 165 13 164 6.28e-11 62.4
MS.gene67103.t1 MTR_3g109340 26.943 193 126 7 11 195 28 213 7.84e-11 62.8
MS.gene67103.t1 MTR_3g096140 31.875 160 96 8 11 165 13 164 9.29e-11 62.8
MS.gene67103.t1 MTR_5g040420 31.973 147 82 6 11 151 20 154 9.59e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67103.t1 AT5G13180 33.333 147 85 5 11 154 20 156 1.14e-12 67.4
MS.gene67103.t1 AT5G62380 32.237 152 94 6 11 159 13 158 3.20e-12 67.0
MS.gene67103.t1 AT5G62380 32.237 152 94 6 11 159 13 158 3.20e-12 67.0
MS.gene67103.t1 AT2G24430 30.000 150 95 4 11 157 22 164 4.98e-12 66.2
MS.gene67103.t1 AT2G24430 30.000 150 95 4 11 157 22 164 4.98e-12 66.2
MS.gene67103.t1 AT3G10480 34.416 154 87 8 11 158 33 178 5.24e-12 67.0
MS.gene67103.t1 AT3G15510 27.660 188 107 7 11 182 23 197 1.77e-11 65.1
MS.gene67103.t1 AT2G46770 31.429 175 81 9 11 159 22 183 9.67e-11 62.8

Find 61 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTGATTTCTTGAATT+TGG 0.087662 1.3:+3809615 None:intergenic
CCACCATTTGATTGACATTT+TGG 0.106202 1.3:+3810152 None:intergenic
AGTGGCAGATTTCTTCTTTA+AGG 0.196237 1.3:+3812653 None:intergenic
TAAAGAATCCTTGGGAGATT+TGG 0.224375 1.3:-3812731 MS.gene67103:CDS
AATCTCCCAAGGATTCTTTA+TGG 0.228130 1.3:+3812734 None:intergenic
CCAGAAAAGACCGTGGTTCT+TGG 0.260366 1.3:-3810098 MS.gene67103:CDS
TAGCAATGTTTGCCAGGATT+TGG 0.273310 1.3:+3809402 None:intergenic
AAACGTTTGATTCGTACTAT+TGG 0.295360 1.3:-3812627 MS.gene67103:CDS
AAAGAATCCTTGGGAGATTT+GGG 0.315347 1.3:-3812730 MS.gene67103:CDS
TGGAAATATCAAGATTGATT+TGG 0.320688 1.3:-3809589 MS.gene67103:CDS
TTGATTCGTACTATTGGAAT+TGG 0.345874 1.3:-3812621 MS.gene67103:CDS
TTCAAGAACATTGATATAGT+TGG 0.354618 1.3:+3812773 None:intergenic
TCATCAAGTGAGAATTTGAT+TGG 0.398760 1.3:+3812112 None:intergenic
TTGATACCATAAAGAATCCT+TGG 0.401306 1.3:-3812740 MS.gene67103:CDS
ATCTTTGATTAACAATGCTT+CGG 0.415664 1.3:-3812454 MS.gene67103:intron
TCAAGAACATTGATATAGTT+GGG 0.434618 1.3:+3812774 None:intergenic
AGTATGGTAACTTACAGATA+TGG 0.443956 1.3:+3812032 None:intergenic
GAACCAAAATGTCAATCAAA+TGG 0.458333 1.3:-3810155 MS.gene67103:CDS
TCAAGAAATCAACTTGATAG+TGG 0.460070 1.3:-3809609 MS.gene67103:CDS
GCAAGTTCTCACTCATATCA+TGG 0.460346 1.3:-3812699 MS.gene67103:CDS
TAAACATAGCAATGTTTGCC+AGG 0.462499 1.3:+3809396 None:intergenic
CAAGGAAAGACAGTTGTTCC+CGG 0.469375 1.3:-3812069 MS.gene67103:CDS
ACAAATAATACTTACAATGT+TGG 0.484031 1.3:+3810061 None:intergenic
TCTGCATAGAACATAATTGC+TGG 0.484592 1.3:+3812188 None:intergenic
ATTGAAATGATTCCAAATCC+TGG 0.485538 1.3:-3809414 MS.gene67103:CDS
ATGAAGATGGTGATATCTCT+TGG 0.494027 1.3:-3809500 MS.gene67103:CDS
GGAGAAAGGTGGGAAATACT+TGG 0.497376 1.3:-3810121 MS.gene67103:CDS
AATCAAATGGTGGACACAAA+AGG 0.500915 1.3:-3810142 MS.gene67103:CDS
TGATACCATAAAGAATCCTT+GGG 0.502233 1.3:-3812739 MS.gene67103:CDS
ATTATAAACAAAGATGAAGA+TGG 0.538976 1.3:-3809513 MS.gene67103:CDS
TCTCACTTGATGAATAGCAT+TGG 0.540753 1.3:-3812102 MS.gene67103:CDS
AGGAAGGTTAATCGAAGAGG+AGG 0.555973 1.3:-3809439 MS.gene67103:CDS
AAAGAGACCGGCCAAACCCT+AGG 0.557513 1.3:-3812558 MS.gene67103:CDS
TATCGTGAACTTTATTGTAG+AGG 0.559597 1.3:+3812805 None:intergenic
CGAAGAAGTTCACCATCTGT+AGG 0.564532 1.3:+3812834 None:intergenic
ACACTTCTCAAGATGGTGGA+TGG 0.567014 1.3:-3812503 MS.gene67103:CDS
AGTATAGTTGACAAAGAGAC+CGG 0.568733 1.3:-3812570 MS.gene67103:CDS
AAGAGTTACACTTCTCAAGA+TGG 0.569646 1.3:-3812510 MS.gene67103:CDS
GAACTCATAGAGGCGAATGA+AGG 0.573007 1.3:-3809459 MS.gene67103:CDS
TTTAGGACATCATTGTTTCG+AGG 0.573378 1.3:-3810193 MS.gene67103:intron
AACTCTTCCCAAATCTCCCA+AGG 0.573940 1.3:+3812723 None:intergenic
TTCTCACTCATATCATGGAA+AGG 0.587566 1.3:-3812694 MS.gene67103:CDS
ACATTGATATAGTTGGGCAC+TGG 0.596165 1.3:+3812780 None:intergenic
TGGTGGACACAAAAGGAGAA+AGG 0.597243 1.3:-3810135 MS.gene67103:CDS
GACAGTTGTTCCCGGACCTG+CGG 0.611545 1.3:-3812061 MS.gene67103:CDS
TGTTAATCAAAGATATGTGA+AGG 0.617441 1.3:+3812463 None:intergenic
CCAAAATGTCAATCAAATGG+TGG 0.617859 1.3:-3810152 MS.gene67103:CDS
TCATAGAGGCGAATGAAGGA+AGG 0.619859 1.3:-3809455 MS.gene67103:CDS
GGACACAAAAGGAGAAAGGT+GGG 0.621854 1.3:-3810131 MS.gene67103:CDS
GTACTATTGGAATTGGTACG+TGG 0.623666 1.3:-3812614 MS.gene67103:CDS
AGTTACACTTCTCAAGATGG+TGG 0.626247 1.3:-3812507 MS.gene67103:CDS
AGCATTGGACAAGATAAGCA+AGG 0.636949 1.3:-3812087 MS.gene67103:CDS
TGGACACAAAAGGAGAAAGG+TGG 0.644978 1.3:-3810132 MS.gene67103:CDS
AAGTGTAACTCTTCTCAAAG+CGG 0.648652 1.3:+3812520 None:intergenic
TACTATTGGAATTGGTACGT+GGG 0.648722 1.3:-3812613 MS.gene67103:CDS
TGAAGGAAGGTTAATCGAAG+AGG 0.648808 1.3:-3809442 MS.gene67103:CDS
ACGAATCAAACGTTTACTAG+TGG 0.651740 1.3:+3812635 None:intergenic
ACGTGGGAAGCTGAAGACAC+CGG 0.664319 1.3:-3812597 MS.gene67103:CDS
AGCTTTAAGTCCAAGAACCA+CGG 0.675233 1.3:+3810088 None:intergenic
TAAAAGTGCCAATACGACAG+AGG 0.688062 1.3:-3809565 MS.gene67103:CDS
TACTTGGCCAGAAAAGACCG+TGG 0.736153 1.3:-3810105 MS.gene67103:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTAATACTATTAATT+TGG + chr1.3:3811507-3811526 None:intergenic 10.0%
!!! AAAAAAAATAGAAATTTGTT+CGG + chr1.3:3811340-3811359 None:intergenic 10.0%
!!! AAATTGTTTAAAAGTATAAT+TGG - chr1.3:3810924-3810943 MS.gene67103:intron 10.0%
!!! AACAATATTTTTTATGAAAT+TGG - chr1.3:3810459-3810478 MS.gene67103:intron 10.0%
!!! AATTGTTTAAAAGTATAATT+GGG - chr1.3:3810925-3810944 MS.gene67103:intron 10.0%
!!! ATATTTTTTTGTTATATTGT+TGG + chr1.3:3810850-3810869 None:intergenic 10.0%
!! AATTATCATTACATATAGAA+AGG + chr1.3:3812014-3812033 None:intergenic 15.0%
!! ATACTAAGTTTATACTAATT+AGG - chr1.3:3809958-3809977 MS.gene67103:intron 15.0%
!! ATATAATCAAATTCAAATCT+GGG + chr1.3:3811731-3811750 None:intergenic 15.0%
!! GTTAAAATAGATCAAATAAA+TGG + chr1.3:3812452-3812471 None:intergenic 15.0%
!! TACTAAGTTTATACTAATTA+GGG - chr1.3:3809959-3809978 MS.gene67103:intron 15.0%
!! TGGGTAAAAAAATTAAAATT+CGG + chr1.3:3811712-3811731 None:intergenic 15.0%
!!! ATTATTATTATTGTTGTTGT+TGG - chr1.3:3811260-3811279 MS.gene67103:intron 15.0%
!!! ATTCTTTTTTCTGTATTTTT+TGG + chr1.3:3810127-3810146 None:intergenic 15.0%
!!! TAACAAAAAACAAATTTTGT+TGG - chr1.3:3811464-3811483 MS.gene67103:intron 15.0%
!!! TAGATATAGATATAGATTTT+TGG - chr1.3:3811201-3811220 MS.gene67103:intron 15.0%
!! AAAAAATAATTCATGAGGTA+AGG + chr1.3:3809913-3809932 None:intergenic 20.0%
!! AAAAATAATTCATGAGGTAA+GGG + chr1.3:3809912-3809931 None:intergenic 20.0%
!! AAAATTGCTAGCAATAATAA+TGG + chr1.3:3811427-3811446 None:intergenic 20.0%
!! AACCAAAAAAATAATTCATG+AGG + chr1.3:3809918-3809937 None:intergenic 20.0%
!! AATATATCAACAAAATCCAT+GGG + chr1.3:3812269-3812288 None:intergenic 20.0%
!! AATCAAGCTAACATAAAAAA+AGG + chr1.3:3810411-3810430 None:intergenic 20.0%
!! ACAAATAATACTTACAATGT+TGG + chr1.3:3812207-3812226 None:intergenic 20.0%
!! ATCAAGCTAACATAAAAAAA+GGG + chr1.3:3810410-3810429 None:intergenic 20.0%
!! ATTATAAACAAAGATGAAGA+TGG - chr1.3:3812752-3812771 MS.gene67103:CDS 20.0%
!! ATTGTTTGAATAATGTGTTT+GGG + chr1.3:3812527-3812546 None:intergenic 20.0%
!! CTAAATCTATATACTTGAAA+AGG - chr1.3:3811652-3811671 MS.gene67103:intron 20.0%
!! GATATAATCAAATTCAAATC+TGG + chr1.3:3811732-3811751 None:intergenic 20.0%
!! TAAACTTAGTATTTAAACGT+TGG + chr1.3:3809950-3809969 None:intergenic 20.0%
!! TAATATATCAACAAAATCCA+TGG + chr1.3:3812270-3812289 None:intergenic 20.0%
!! TATATATATTAGCGAAAAGT+CGG - chr1.3:3810661-3810680 MS.gene67103:intron 20.0%
!! TCAACTAAAAAGAGAAAATT+TGG - chr1.3:3811826-3811845 MS.gene67103:intron 20.0%
!! TTACCATACTATAATTTGAT+TGG - chr1.3:3810246-3810265 MS.gene67103:intron 20.0%
!!! ATGTGTTATTTATTTGTTGA+AGG - chr1.3:3812241-3812260 MS.gene67103:intron 20.0%
!!! GAAAGAAAAAAAAGATTTTG+AGG + chr1.3:3810620-3810639 None:intergenic 20.0%
!!! GAAATTGGTTTTGATTAAAA+AGG - chr1.3:3810474-3810493 MS.gene67103:intron 20.0%
!!! TACCTCATGAATTATTTTTT+TGG - chr1.3:3809913-3809932 MS.gene67103:intron 20.0%
!!! TTTTCTGTATTTTTTGGATT+GGG + chr1.3:3810121-3810140 None:intergenic 20.0%
!!! TTTTTCTGTATTTTTTGGAT+TGG + chr1.3:3810122-3810141 None:intergenic 20.0%
! AAAAATTTCAAACCTACAGA+TGG - chr1.3:3809419-3809438 MS.gene67103:CDS 25.0%
! AAGAGAAAAAACAAATACGA+CGG + chr1.3:3810387-3810406 None:intergenic 25.0%
! ACTATTTGTATTGAAAGTTG+AGG - chr1.3:3811097-3811116 MS.gene67103:intron 25.0%
! ATCTTTGATTAACAATGCTT+CGG - chr1.3:3809811-3809830 MS.gene67103:intron 25.0%
! ATGAAAACGATTAAATCTGA+TGG - chr1.3:3811629-3811648 MS.gene67103:intron 25.0%
! ATTCACAAATGATCATATGT+AGG - chr1.3:3812299-3812318 MS.gene67103:intron 25.0%
! CAATAAAAAGAGTGGAAAAA+TGG + chr1.3:3810699-3810718 None:intergenic 25.0%
! CATTGTTTGAATAATGTGTT+TGG + chr1.3:3812528-3812547 None:intergenic 25.0%
! GAAAAATCTAACAAAGAAGA+TGG - chr1.3:3812722-3812741 MS.gene67103:CDS 25.0%
! GTCATTGAAATAGATAATCA+TGG + chr1.3:3810826-3810845 None:intergenic 25.0%
! TAACATTTGAACAAGATTAC+TGG + chr1.3:3811754-3811773 None:intergenic 25.0%
! TAGCCAATCAAATTATAGTA+TGG + chr1.3:3810252-3810271 None:intergenic 25.0%
! TCAAGAACATTGATATAGTT+GGG + chr1.3:3809494-3809513 None:intergenic 25.0%
! TGGAAATATCAAGATTGATT+TGG - chr1.3:3812676-3812695 MS.gene67103:CDS 25.0%
! TGTTAATCAAAGATATGTGA+AGG + chr1.3:3809805-3809824 None:intergenic 25.0%
! TTCAAGAACATTGATATAGT+TGG + chr1.3:3809495-3809514 None:intergenic 25.0%
! TTTCCTTTATCCCTTAAAAA+GGG + chr1.3:3810993-3811012 None:intergenic 25.0%
!! AATTTGGATCAATATTTTCC+TGG + chr1.3:3812637-3812656 None:intergenic 25.0%
!! ATTATTATTGTTGTTGTTGG+TGG - chr1.3:3811263-3811282 MS.gene67103:intron 25.0%
!! CTTAAACAAGCTTGTTTAAA+AGG + chr1.3:3810573-3810592 None:intergenic 25.0%
!! CTTTTGCATTCTTGATTTTT+AGG - chr1.3:3812055-3812074 MS.gene67103:CDS 25.0%
!! TAAAAGTGACAATTTTTCCT+TGG - chr1.3:3810010-3810029 MS.gene67103:intron 25.0%
!! TTTGGAACAAGAATGAAATT+TGG - chr1.3:3811844-3811863 MS.gene67103:intron 25.0%
!! TTTTCCTTTATCCCTTAAAA+AGG + chr1.3:3810994-3811013 None:intergenic 25.0%
!! TTTTTCCACTCTTTTTATTG+CGG - chr1.3:3810699-3810718 MS.gene67103:intron 25.0%
!!! AAAGTGATTTTTTTGTGTGT+GGG - chr1.3:3810307-3810326 MS.gene67103:intron 25.0%
!!! ACTAATTAGGGTTTATTTTC+TGG - chr1.3:3809971-3809990 MS.gene67103:intron 25.0%
!!! AGAAAAAAAAGATTTTGAGG+TGG + chr1.3:3810617-3810636 None:intergenic 25.0%
!!! GGACTATGATTTACTTTTTA+AGG + chr1.3:3812431-3812450 None:intergenic 25.0%
!!! GTTTCTTTGTGATTTTTTTG+TGG - chr1.3:3811300-3811319 MS.gene67103:intron 25.0%
!!! TAAAGTGATTTTTTTGTGTG+TGG - chr1.3:3810306-3810325 MS.gene67103:intron 25.0%
!!! TACTTTTTAAGGTGAATAAG+TGG + chr1.3:3812420-3812439 None:intergenic 25.0%
!!! TAGTTTGTTACCCTTTTTAA+GGG - chr1.3:3810980-3810999 MS.gene67103:intron 25.0%
!!! TCAAGTTGATTTCTTGAATT+TGG + chr1.3:3812653-3812672 None:intergenic 25.0%
!!! TTGGTTTTGATTAAAAAGGA+TGG - chr1.3:3810478-3810497 MS.gene67103:intron 25.0%
!!! TTTGTCAACTATACTTTTTC+CGG + chr1.3:3809690-3809709 None:intergenic 25.0%
AGAGAAAAAACAAATACGAC+GGG + chr1.3:3810386-3810405 None:intergenic 30.0%
AGTATGGTAACTTACAGATA+TGG + chr1.3:3810236-3810255 None:intergenic 30.0%
ATTGAAATGATTCCAAATCC+TGG - chr1.3:3812851-3812870 MS.gene67103:CDS 30.0%
GAACCAAAATGTCAATCAAA+TGG - chr1.3:3812110-3812129 MS.gene67103:CDS 30.0%
GCATTGTTATATGAAGATGT+CGG - chr1.3:3812376-3812395 MS.gene67103:intron 30.0%
TATCGTGAACTTTATTGTAG+AGG + chr1.3:3809463-3809482 None:intergenic 30.0%
TCAAGAAATCAACTTGATAG+TGG - chr1.3:3812656-3812675 MS.gene67103:CDS 30.0%
TCATCAAGTGAGAATTTGAT+TGG + chr1.3:3810156-3810175 None:intergenic 30.0%
TGATACCATAAAGAATCCTT+GGG - chr1.3:3809526-3809545 MS.gene67103:CDS 30.0%
TTGATACCATAAAGAATCCT+TGG - chr1.3:3809525-3809544 MS.gene67103:CDS 30.0%
TTTATCATGTTCAACTTTGC+TGG + chr1.3:3811899-3811918 None:intergenic 30.0%
! AAACGTTTGATTCGTACTAT+TGG - chr1.3:3809638-3809657 MS.gene67103:intron 30.0%
! ATAACATGTTTTGCCTCTTT+TGG + chr1.3:3811150-3811169 None:intergenic 30.0%
! TAACATGTTTTGCCTCTTTT+GGG + chr1.3:3811149-3811168 None:intergenic 30.0%
! TTGATTCGTACTATTGGAAT+TGG - chr1.3:3809644-3809663 MS.gene67103:intron 30.0%
!! TTACCCTTTTTAAGGGATAA+AGG - chr1.3:3810987-3811006 MS.gene67103:intron 30.0%
!!! CTAGTTTGTTACCCTTTTTA+AGG - chr1.3:3810979-3810998 MS.gene67103:intron 30.0%
!!! GAAACGTTTTTTTAGACCTA+GGG + chr1.3:3809726-3809745 None:intergenic 30.0%
AAAGAATCCTTGGGAGATTT+GGG - chr1.3:3809535-3809554 MS.gene67103:CDS 35.0%
AAGAGTTACACTTCTCAAGA+TGG - chr1.3:3809755-3809774 MS.gene67103:intron 35.0%
AAGGGTGGTCACTATTTAAT+AGG + chr1.3:3809894-3809913 None:intergenic 35.0%
AAGTGTAACTCTTCTCAAAG+CGG + chr1.3:3809748-3809767 None:intergenic 35.0%
AATAATTCATGAGGTAAGGG+TGG + chr1.3:3809909-3809928 None:intergenic 35.0%
AATCTCCCAAGGATTCTTTA+TGG + chr1.3:3809534-3809553 None:intergenic 35.0%
ACGAATCAAACGTTTACTAG+TGG + chr1.3:3809633-3809652 None:intergenic 35.0%
AGTATAGTTGACAAAGAGAC+CGG - chr1.3:3809695-3809714 MS.gene67103:intron 35.0%
AGTGGCAGATTTCTTCTTTA+AGG + chr1.3:3809615-3809634 None:intergenic 35.0%
ATGAAGATGGTGATATCTCT+TGG - chr1.3:3812765-3812784 MS.gene67103:CDS 35.0%
CCAAAATGTCAATCAAATGG+TGG - chr1.3:3812113-3812132 MS.gene67103:CDS 35.0%
GAGAAAAAACAAATACGACG+GGG + chr1.3:3810385-3810404 None:intergenic 35.0%
TAAACATAGCAATGTTTGCC+AGG + chr1.3:3812872-3812891 None:intergenic 35.0%
TAAAGAATCCTTGGGAGATT+TGG - chr1.3:3809534-3809553 MS.gene67103:CDS 35.0%
TAAATGTGTGCACAATACCA+AGG + chr1.3:3810030-3810049 None:intergenic 35.0%
TACCAAGTGATATATGCACA+CGG + chr1.3:3812348-3812367 None:intergenic 35.0%
TACTATTGGAATTGGTACGT+GGG - chr1.3:3809652-3809671 MS.gene67103:intron 35.0%
TCTCACTTGATGAATAGCAT+TGG - chr1.3:3810163-3810182 MS.gene67103:CDS 35.0%
TCTGCATAGAACATAATTGC+TGG + chr1.3:3810080-3810099 None:intergenic 35.0%
TTCTCACTCATATCATGGAA+AGG - chr1.3:3809571-3809590 MS.gene67103:CDS 35.0%
! AATGCAGGAGCACAATAATA+AGG + chr1.3:3812606-3812625 None:intergenic 35.0%
! AGATTTTTCCTCTGTCGTAT+TGG + chr1.3:3812711-3812730 None:intergenic 35.0%
! ATTATTGTTGTTGTTGGTGG+TGG - chr1.3:3811266-3811285 MS.gene67103:intron 35.0%
! CCACCATTTGATTGACATTT+TGG + chr1.3:3812116-3812135 None:intergenic 35.0%
! TGCTGGTCAGCTAAAAATTT+TGG + chr1.3:3811882-3811901 None:intergenic 35.0%
! TTATTTGTTGAAGGAACCCA+TGG - chr1.3:3812250-3812269 MS.gene67103:intron 35.0%
! TTTAGGACATCATTGTTTCG+AGG - chr1.3:3812072-3812091 MS.gene67103:CDS 35.0%
!! AATCAAATGGTGGACACAAA+AGG - chr1.3:3812123-3812142 MS.gene67103:CDS 35.0%
!!! GGAAACGTTTTTTTAGACCT+AGG + chr1.3:3809727-3809746 None:intergenic 35.0%
!!! GTTTTTTTAGACCTAGGGTT+TGG + chr1.3:3809721-3809740 None:intergenic 35.0%
ACATTGATATAGTTGGGCAC+TGG + chr1.3:3809488-3809507 None:intergenic 40.0%
ACCAAGTGATATATGCACAC+GGG + chr1.3:3812347-3812366 None:intergenic 40.0%
AGAAAATGTCAGCCCAAAAG+AGG - chr1.3:3811134-3811153 MS.gene67103:intron 40.0%
AGTTACACTTCTCAAGATGG+TGG - chr1.3:3809758-3809777 MS.gene67103:intron 40.0%
CATCACCGCAATAAAAAGAG+TGG + chr1.3:3810707-3810726 None:intergenic 40.0%
GCAAGTTCTCACTCATATCA+TGG - chr1.3:3809566-3809585 MS.gene67103:CDS 40.0%
GTACTATTGGAATTGGTACG+TGG - chr1.3:3809651-3809670 MS.gene67103:intron 40.0%
TAGCAATGTTTGCCAGGATT+TGG + chr1.3:3812866-3812885 None:intergenic 40.0%
TGAAGGAAGGTTAATCGAAG+AGG - chr1.3:3812823-3812842 MS.gene67103:CDS 40.0%
TTCCTGGAAAATGAGAATGC+AGG + chr1.3:3812621-3812640 None:intergenic 40.0%
! AGCATTGGACAAGATAAGCA+AGG - chr1.3:3810178-3810197 MS.gene67103:CDS 40.0%
! TTTTGCAAGGGAACTCATAG+AGG - chr1.3:3812796-3812815 MS.gene67103:CDS 40.0%
!! AGCTTTAAGTCCAAGAACCA+CGG + chr1.3:3812180-3812199 None:intergenic 40.0%
!! TAAAAGTGCCAATACGACAG+AGG - chr1.3:3812700-3812719 MS.gene67103:CDS 40.0%
!!! CTGCTTTTGCGTTTTTTTGC+AGG - chr1.3:3810054-3810073 MS.gene67103:intron 40.0%
AACTCTTCCCAAATCTCCCA+AGG + chr1.3:3809545-3809564 None:intergenic 45.0%
AGGAAGGTTAATCGAAGAGG+AGG - chr1.3:3812826-3812845 MS.gene67103:CDS 45.0%
AGTTCCCTTGCAAAAAGCTC+AGG + chr1.3:3812791-3812810 None:intergenic 45.0%
CAAGGAAAGACAGTTGTTCC+CGG - chr1.3:3810196-3810215 MS.gene67103:intron 45.0%
CCAAGTGATATATGCACACG+GGG + chr1.3:3812346-3812365 None:intergenic 45.0%
CGAAGAAGTTCACCATCTGT+AGG + chr1.3:3809434-3809453 None:intergenic 45.0%
GAACTCATAGAGGCGAATGA+AGG - chr1.3:3812806-3812825 MS.gene67103:CDS 45.0%
GGACACAAAAGGAGAAAGGT+GGG - chr1.3:3812134-3812153 MS.gene67103:CDS 45.0%
GGAGAAAGGTGGGAAATACT+TGG - chr1.3:3812144-3812163 MS.gene67103:CDS 45.0%
TCATAGAGGCGAATGAAGGA+AGG - chr1.3:3812810-3812829 MS.gene67103:CDS 45.0%
TGGACACAAAAGGAGAAAGG+TGG - chr1.3:3812133-3812152 MS.gene67103:CDS 45.0%
! CTCCTGCATTCTCATTTTCC+AGG - chr1.3:3812616-3812635 MS.gene67103:CDS 45.0%
! TGGTGGACACAAAAGGAGAA+AGG - chr1.3:3812130-3812149 MS.gene67103:CDS 45.0%
! TTGGCCTGAGCTTTTTGCAA+GGG - chr1.3:3812784-3812803 MS.gene67103:CDS 45.0%
! TTTTAGACCTAGGGTTTGGC+CGG + chr1.3:3809717-3809736 None:intergenic 45.0%
!! ACACTTCTCAAGATGGTGGA+TGG - chr1.3:3809762-3809781 MS.gene67103:intron 45.0%
!! ATTGTTGTTGTTGGTGGTGG+TGG - chr1.3:3811269-3811288 MS.gene67103:intron 45.0%
!! AAAAAAAAAAAAAAAAGATT+TGG + chr1.3:3811928-3811947 None:intergenic 5.0%
!!! GTTTTATTTATTTATTTTTT+TGG - chr1.3:3811525-3811544 MS.gene67103:intron 5.0%
!!! TTTTATTTAAATACAAAATT+TGG - chr1.3:3811795-3811814 MS.gene67103:intron 5.0%
!!! TTTTGTATTTAAATAAAATT+TGG + chr1.3:3811793-3811812 None:intergenic 5.0%
CCAGAAAAGACCGTGGTTCT+TGG - chr1.3:3812167-3812186 MS.gene67103:CDS 50.0%
CCCCGTGTGCATATATCACT+TGG - chr1.3:3812343-3812362 MS.gene67103:intron 50.0%
TACTTGGCCAGAAAAGACCG+TGG - chr1.3:3812160-3812179 MS.gene67103:CDS 50.0%
! ACAGATATGGCGTTTTCCGC+AGG + chr1.3:3810223-3810242 None:intergenic 50.0%
! CCAAGAACCACGGTCTTTTC+TGG + chr1.3:3812170-3812189 None:intergenic 50.0%
! CTTGGCCTGAGCTTTTTGCA+AGG - chr1.3:3812783-3812802 MS.gene67103:CDS 50.0%
AAAGAGACCGGCCAAACCCT+AGG - chr1.3:3809707-3809726 MS.gene67103:intron 55.0%
ACGTGGGAAGCTGAAGACAC+CGG - chr1.3:3809668-3809687 MS.gene67103:intron 55.0%
! TATGGCGTTTTCCGCAGGTC+CGG + chr1.3:3810218-3810237 None:intergenic 55.0%
GACAGTTGTTCCCGGACCTG+CGG - chr1.3:3810204-3810223 MS.gene67103:intron 60.0%
! ATGGCGTTTTCCGCAGGTCC+GGG + chr1.3:3810217-3810236 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3809395 3812892 3809395 ID=MS.gene67103
chr1.3 mRNA 3809395 3812892 3809395 ID=MS.gene67103.t1;Parent=MS.gene67103
chr1.3 exon 3812455 3812892 3812455 ID=MS.gene67103.t1.exon1;Parent=MS.gene67103.t1
chr1.3 CDS 3812455 3812892 3812455 ID=cds.MS.gene67103.t1;Parent=MS.gene67103.t1
chr1.3 exon 3812047 3812211 3812047 ID=MS.gene67103.t1.exon2;Parent=MS.gene67103.t1
chr1.3 CDS 3812047 3812211 3812047 ID=cds.MS.gene67103.t1;Parent=MS.gene67103.t1
chr1.3 exon 3810076 3810210 3810076 ID=MS.gene67103.t1.exon3;Parent=MS.gene67103.t1
chr1.3 CDS 3810076 3810210 3810076 ID=cds.MS.gene67103.t1;Parent=MS.gene67103.t1
chr1.3 exon 3809395 3809649 3809395 ID=MS.gene67103.t1.exon4;Parent=MS.gene67103.t1
chr1.3 CDS 3809395 3809649 3809395 ID=cds.MS.gene67103.t1;Parent=MS.gene67103.t1
Gene Sequence

>MS.gene67103

ATGGCTCACAATTCTCGATCAAGTAAAAATTTCAAACCTACAGATGGTGAACTTCTTCGATCATTCCTCTACAATAAAGTTCACGATATACCAGTGCCCAACTATATCAATGTTCTTGAATATGATTTATTTGATACCATAAAGAATCCTTGGGAGATTTGGGAAGAGTTTGCAAGTTCTCACTCATATCATGGAAAGGACTTATATTTCTTCACTACCTTAAAGAAGAAATCTGCCACTAGTAAACGTTTGATTCGTACTATTGGAATTGGTACGTGGGAAGCTGAAGACACCGGAAAAAGTATAGTTGACAAAGAGACCGGCCAAACCCTAGGTCTAAAAAAACGTTTCCGCTTTGAGAAGAGTTACACTTCTCAAGATGGTGGATGGATCTTGCATGAATATAGCCTTCACATATCTTTGATTAACAATGCTTCGGTAAGCAATATGATCATATATTTATATTTATATTTATATTATTAGTTAGTTAGTAGTACCTATTAAATAGTGACCACCCTTACCTCATGAATTATTTTTTTGGTTGAACTAAGACCAACGTTTAAATACTAAGTTTATACTAATTAGGGTTTATTTTCTGGTTTGTAGCACTGCATGTAAAAGTGACAATTTTTCCTTGGTATTGTGCACACATTTATAATCTGCTTTTGCGTTTTTTTGCAGGCCAGCAATTATGTTCTATGCAGATTCAGAAAGAATTTGAAACCCAATCCAAAAAATACAGAAAAAAGAATCGATGACCAATCAAATTCTCACTTGATGAATAGCATTGGACAAGATAAGCAAGGAAAGACAGTTGTTCCCGGACCTGCGGAAAACGCCATATCTGTAAGTTACCATACTATAATTTGATTGGCTACTAATATTATGTTAGCTTGATTAGTCGTTAATTATAAAGTGATTTTTTTGTGTGTGGGTGTCATAATTAGTGATTTTATGCATTCAAGATTGAGTTCTTCTCAACTTTGTCCCCGTCGTATTTGTTTTTTCTCTTCCCTTTTTTTATGTTAGCTTGATTTTATGCGTTCAAGATTTACTCTTTAATGAACAATATTTTTTATGAAATTGGTTTTGATTAAAAAGGATGGTATAAATATTTTTACTTTCAATTTGTAACGAACAATTCTTATCTTTTTCAATAAAACTAAATATAACATCCTTTTAAACAAGCTTGTTTAAGATTATAATTATAAGTGAAAAGCCACCTCAAAATCTTTTTTTTCTTTCTAAAAAATCATCTATTTTCTTTATATATATTAGCGAAAAGTCGGACACTCACGTATCCATTTTTCCACTCTTTTTATTGCGGTGATGTTTGAAAATTTACGAACGACGTTTTTTTTATGAAATTTTGATTAAAAGTAAAAATATAAATGATTTCTGCTTTCAAATTATAACAAATCAAACTAACCATGATTATCTATTTCAATGACACCAACAATATAACAAAAAAATATAATCTAAATTCTTATTTTTTTTAATAACACTGATAACAATCTTTATTATAAAAAAAATTGTTTAAAAGTATAATTGGGATAATGAAAAAGTATGTATAGATATATTTTTCTAGTTTGTTACCCTTTTTAAGGGATAAAGGAAAAAAAATTGAACATATATAATCATATCGTGTTTGTTACACTTTTATTTTAATATTTGAATTTACTCTTATCTATTTGTTATGTGTACTATTTGTATTGAAAGTTGAGGATAATTTTTGAAAAAGAAAATGTCAGCCCAAAAGAGGCAAAACATGTTATTTTCTTTATATATAGTATAGAAGTATAGATATAGATATAGATATAGATTTTTGGACAAAAACATATATATATATAGAAGTATAGATATAGATTATTATTATTGTTGTTGTTGGTGGTGGTGGTTTTAGTTGTTTCTTTGTGATTTTTTTGTGGACAGTTGTTTCTTACCGAACAAATTTCTATTTTTTTTTATTTTACACTTGAAATTTTTAACAATGTTTATCTTGTTTATAAAATTTCAACTCTTCATGAAACCATTATTATTGCTAGCAATTTTTTTTTTTAATTTGCATATAACAAAAAACAAATTTTGTTGGAAAAAAACTTGAGTTTTCCAAATTAATAGTATTAATTAGTTTTATTTATTTATTTTTTTGGCTGAGTATTGATTAATGTTATTGAAAAAGAGTAAGTAAGAGTAATTGAAAAATGATATAATTGACAAACTGTACATTAACTATGAAAACGATTAAATCTGATGGCTAAATCTATATACTTGAAAAGGAACGAAGAAAATTGATTTGATTGCAAGAGTCTTTCCGAATTTTAATTTTTTTACCCAGATTTGAATTTGATTATATCCAGTAATCTTGTTCAAATGTTATAGATTTTTTAGTTAACCAAATTTTATTTAAATACAAAATTTGGAATAAGAGTCAACTAAAAAGAGAAAATTTGGAACAAGAATGAAATTTGGAATATCGTCTCTCCAAAATTTTTAGCTGACCAGCAAAGTTGAACATGATAAAGTCTTTCCAAATCTTTTTTTTTTTTTTTTTACATATTGAAATCAATTTTCTATTTTTACGATGTAATACTTTGTATATACAAATACAATCTTCCTTTCTATATGTAATGATAATTCAATTTTTTTTACTGAACACTCTTTTGCATTCTTGATTTTTAGGACATCATTGTTTCGAGGAAATTTGTTCATGAAGAACCAAAATGTCAATCAAATGGTGGACACAAAAGGAGAAAGGTGGGAAATACTTGGCCAGAAAAGACCGTGGTTCTTGGACTTAAAGCTATCACCAACATTGTAAGTATTATTTGTGTGTTTCTGTATATATGTGTTATTTATTTGTTGAAGGAACCCATGGATTTTGTTGATATATTAATATTAGTTATTCACAAATGATCATATGTAGGTTTAATTTAAGAGAGTTTTGTCCCCGTGTGCATATATCACTTGGTATAGACAATGCATTGTTATATGAAGATGTCGGAGTTCGAATCTCGATACTCCACTTATTCACCTTAAAAAGTAAATCATAGTCCATTTATTTGATCTATTTTAACATTTTGAATTTTGTTAATTCATGTACTAACAAAAATTGTGTGTTTACTCTTACCCAAACACATTATTCAAACAATGAAAATTTAAATGAGAAACAAATATGAAATTCAAAAATTGTATTCATAAATTAACTCCTTATTATTGTGCTCCTGCATTCTCATTTTCCAGGAAAATATTGATCCAAATTCAAGAAATCAACTTGATAGTGGAAATATCAAGATTGATTTGGTTAAAAGTGCCAATACGACAGAGGAAAAATCTAACAAAGAAGATGGTGATCATATTATAAACAAAGATGAAGATGGTGATATCTCTTGGCCTGAGCTTTTTGCAAGGGAACTCATAGAGGCGAATGAAGGAAGGTTAATCGAAGAGGAGGATATTGAAATGATTCCAAATCCTGGCAAACATTGCTATGTTTAA
Protein sequence

>MS.gene67103.t1

MAHNSRSSKNFKPTDGELLRSFLYNKVHDIPVPNYINVLEYDLFDTIKNPWEIWEEFASSHSYHGKDLYFFTTLKKKSATSKRLIRTIGIGTWEAEDTGKSIVDKETGQTLGLKKRFRFEKSYTSQDGGWILHEYSLHISLINNASASNYVLCRFRKNLKPNPKNTEKRIDDQSNSHLMNSIGQDKQGKTVVPGPAENAISDIIVSRKFVHEEPKCQSNGGHKRRKVGNTWPEKTVVLGLKAITNIENIDPNSRNQLDSGNIKIDLVKSANTTEEKSNKEDGDHIINKDEDGDISWPELFARELIEANEGRLIEEEDIEMIPNPGKHCYV