Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67133.t1 | XP_003591640.1 | 77.9 | 503 | 27 | 5 | 3 | 424 | 2 | 501 | 1.40E-204 | 722.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67133.t1 | Q3ECP0 | 46.0 | 509 | 175 | 8 | 8 | 424 | 5 | 505 | 1.7e-110 | 401.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67133.t1 | G7I2Y6 | 77.9 | 503 | 27 | 5 | 3 | 424 | 2 | 501 | 1.0e-204 | 722.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67133.t1 | TF | BSD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67133.t1 | MTR_1g090110 | 87.647 | 340 | 22 | 3 | 103 | 424 | 164 | 501 | 0.0 | 567 |
| MS.gene67133.t1 | MTR_1g090110 | 62.874 | 167 | 45 | 4 | 3 | 168 | 2 | 152 | 7.95e-58 | 199 |
| MS.gene67133.t1 | MTR_6g071555 | 84.132 | 334 | 39 | 4 | 103 | 424 | 164 | 495 | 0.0 | 525 |
| MS.gene67133.t1 | MTR_6g071555 | 63.253 | 166 | 46 | 4 | 3 | 168 | 2 | 152 | 2.38e-56 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67133.t1 | AT1G55750 | 51.445 | 346 | 135 | 7 | 104 | 424 | 168 | 505 | 2.02e-98 | 305 |
| MS.gene67133.t1 | AT1G55750 | 57.732 | 97 | 41 | 0 | 8 | 104 | 5 | 101 | 1.97e-30 | 123 |
| MS.gene67133.t1 | AT1G55750 | 51.445 | 346 | 135 | 7 | 104 | 424 | 168 | 505 | 2.02e-98 | 305 |
| MS.gene67133.t1 | AT1G55750 | 57.732 | 97 | 41 | 0 | 8 | 104 | 5 | 101 | 1.97e-30 | 123 |
| MS.gene67133.t1 | AT1G55750 | 51.445 | 346 | 135 | 7 | 104 | 424 | 168 | 505 | 3.74e-98 | 305 |
| MS.gene67133.t1 | AT1G55750 | 57.732 | 97 | 41 | 0 | 8 | 104 | 5 | 101 | 1.84e-30 | 124 |
| MS.gene67133.t1 | AT1G55750 | 51.445 | 346 | 135 | 7 | 104 | 424 | 168 | 505 | 3.74e-98 | 305 |
| MS.gene67133.t1 | AT1G55750 | 57.732 | 97 | 41 | 0 | 8 | 104 | 5 | 101 | 1.84e-30 | 124 |
| MS.gene67133.t1 | AT1G55750 | 51.335 | 337 | 145 | 6 | 104 | 428 | 168 | 497 | 1.68e-96 | 299 |
| MS.gene67133.t1 | AT1G55750 | 57.732 | 97 | 41 | 0 | 8 | 104 | 5 | 101 | 1.08e-30 | 124 |
| MS.gene67133.t1 | AT1G55750 | 51.335 | 337 | 145 | 6 | 104 | 428 | 168 | 497 | 1.68e-96 | 299 |
| MS.gene67133.t1 | AT1G55750 | 57.732 | 97 | 41 | 0 | 8 | 104 | 5 | 101 | 1.08e-30 | 124 |
| MS.gene67133.t1 | AT3G61420 | 50.289 | 346 | 139 | 6 | 104 | 424 | 138 | 475 | 9.32e-95 | 295 |
| MS.gene67133.t1 | AT3G61420 | 40.441 | 136 | 69 | 4 | 35 | 169 | 2 | 126 | 2.33e-21 | 97.1 |
| MS.gene67133.t1 | AT3G61420 | 50.289 | 346 | 139 | 6 | 104 | 424 | 163 | 500 | 1.69e-94 | 296 |
| MS.gene67133.t1 | AT3G61420 | 43.125 | 160 | 79 | 4 | 11 | 169 | 3 | 151 | 5.50e-30 | 122 |
Find 96 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCAAAACTATGGGATTA+AGG | 0.198132 | 1.3:+4046819 | MS.gene67133:CDS |
| TTTCACGGTGGATTTGTATT+TGG | 0.255079 | 1.3:-4045724 | None:intergenic |
| ATTAGGCTTGAAAACAAGTT+TGG | 0.266042 | 1.3:-4045784 | None:intergenic |
| TTGTTTGATGTTGGATCATT+AGG | 0.268362 | 1.3:-4045801 | None:intergenic |
| CATATCTAACATCAAAACTA+TGG | 0.272962 | 1.3:+4046811 | MS.gene67133:CDS |
| ATCTACCTCGCTCATCTTAC+TGG | 0.275458 | 1.3:-4046162 | None:intergenic |
| AACACTTCTACCGCTGTTCT+TGG | 0.294865 | 1.3:-4046533 | None:intergenic |
| TTTAACCGACTATCACTAAT+AGG | 0.305969 | 1.3:-4046050 | None:intergenic |
| AGATGAGCGAGGTAGATTTC+TGG | 0.319926 | 1.3:+4046168 | MS.gene67133:CDS |
| CATCAAAACTATGGGATTAA+GGG | 0.349658 | 1.3:+4046820 | MS.gene67133:CDS |
| TTCCTCCTTAGTTGTGTTGT+TGG | 0.351345 | 1.3:-4046906 | None:intergenic |
| TTTCAGATCTTCATGTTTGC+CGG | 0.354972 | 1.3:+4045949 | MS.gene67133:CDS |
| GCTTAACCTTGTACATTCTC+AGG | 0.360510 | 1.3:+4045896 | MS.gene67133:CDS |
| TCCTCCTTAGTTGTGTTGTT+GGG | 0.368312 | 1.3:-4046905 | None:intergenic |
| TAATACCAGTGGCGAATTCC+CGG | 0.370351 | 1.3:-4045968 | None:intergenic |
| TAAATCAGGTTAAATTTCAA+TGG | 0.370766 | 1.3:+4046069 | MS.gene67133:CDS |
| TAGTGATAGTCGGTTAAATC+AGG | 0.383827 | 1.3:+4046055 | MS.gene67133:CDS |
| GGTCCAGATTGAAGATCTTC+AGG | 0.397497 | 1.3:+4046619 | MS.gene67133:CDS |
| TTAGGCTTGAAAACAAGTTT+GGG | 0.404203 | 1.3:-4045783 | None:intergenic |
| TACACTCATCTTCCTGATCA+TGG | 0.406262 | 1.3:+4046377 | MS.gene67133:CDS |
| AGATCATTGGGTTTGCAGTC+AGG | 0.408017 | 1.3:+4046934 | MS.gene67133:CDS |
| TGGTTTGTTTGACCCCTCTT+TGG | 0.411608 | 1.3:-4045868 | None:intergenic |
| AGGAGGAACTACTAGATCAT+TGG | 0.416174 | 1.3:+4046921 | MS.gene67133:CDS |
| CCGCCTGAAGATCTTCAATC+TGG | 0.436103 | 1.3:-4046622 | None:intergenic |
| TATCAAGGCACAATCCATAA+AGG | 0.458611 | 1.3:-4046877 | None:intergenic |
| CAAAGTGAGGTGGTTCTTGA+AGG | 0.467205 | 1.3:+4046482 | MS.gene67133:CDS |
| GGAGGAACTACTAGATCATT+GGG | 0.473233 | 1.3:+4046922 | MS.gene67133:CDS |
| TGTTGTTGGGTAATATATCA+AGG | 0.475960 | 1.3:-4046892 | None:intergenic |
| TTGCGGAAAATCCCATGATC+AGG | 0.483901 | 1.3:-4046389 | None:intergenic |
| TGCTATTGCAGCAGCTGCTG+AGG | 0.495654 | 1.3:+4046232 | MS.gene67133:CDS |
| GTTTGCCGGGAATTCGCCAC+TGG | 0.495776 | 1.3:+4045963 | MS.gene67133:CDS |
| TTAAGTTCTGAGGAAGCCTA+TGG | 0.498283 | 1.3:+4046773 | MS.gene67133:CDS |
| TTCAGATCTTCATGTTTGCC+GGG | 0.499741 | 1.3:+4045950 | MS.gene67133:CDS |
| ACCTTGGATGATTCCCTAGC+CGG | 0.501438 | 1.3:+4046728 | MS.gene67133:CDS |
| TGAAGCTTGTTGTTTGATGT+TGG | 0.501548 | 1.3:-4045810 | None:intergenic |
| TTGATTACACCAGGAGTACC+AGG | 0.502105 | 1.3:-4045750 | None:intergenic |
| GCAACCTCATGACTCAATAG+AGG | 0.513815 | 1.3:-4046845 | None:intergenic |
| GTGAAAGATCCTGGTACTCC+TGG | 0.514202 | 1.3:+4045741 | MS.gene67133:CDS |
| CGGAGAAAACATGAATCTGA+TGG | 0.515296 | 1.3:+4046560 | MS.gene67133:CDS |
| CGAAAGTTAAAACAAAGGAT+TGG | 0.516018 | 1.3:+4045996 | MS.gene67133:CDS |
| GGAAGCCTATGGCTCTTTGA+GGG | 0.516237 | 1.3:+4046784 | MS.gene67133:CDS |
| AAATCCACCGTGAAAGATCC+TGG | 0.516571 | 1.3:+4045732 | MS.gene67133:CDS |
| CGAGTCAATTTGATTACACC+AGG | 0.517125 | 1.3:-4045759 | None:intergenic |
| GGATGATTCCCTAGCCGGTA+AGG | 0.521411 | 1.3:+4046733 | MS.gene67133:CDS |
| TCTGCTACCATGTCTAAAGT+TGG | 0.523766 | 1.3:-4046341 | None:intergenic |
| ACACTCATCTTCCTGATCAT+GGG | 0.525315 | 1.3:+4046378 | MS.gene67133:CDS |
| ATTTGTACCACTCTGTATCA+AGG | 0.527352 | 1.3:+4046661 | MS.gene67133:CDS |
| TTGGGTTTGCAGTCAGGAGG+AGG | 0.527535 | 1.3:+4046940 | MS.gene67133:CDS |
| TCTTACTGGGTACAAAATTG+AGG | 0.534359 | 1.3:-4046148 | None:intergenic |
| ATATCTAACATCAAAACTAT+GGG | 0.539136 | 1.3:+4046812 | MS.gene67133:CDS |
| AGGAATGCCTGGTGAACTGC+GGG | 0.540322 | 1.3:-4046128 | None:intergenic |
| ATTACCCAACAACACAACTA+AGG | 0.541021 | 1.3:+4046901 | MS.gene67133:CDS |
| AGGAAGCCTATGGCTCTTTG+AGG | 0.545122 | 1.3:+4046783 | MS.gene67133:CDS |
| AAGATGCAATTTAAGTTCTG+AGG | 0.546645 | 1.3:+4046763 | MS.gene67133:CDS |
| TACGGTGATGTCTTCTTCGT+CGG | 0.547475 | 1.3:+4045680 | None:intergenic |
| TCTACCTCGCTCATCTTACT+GGG | 0.549438 | 1.3:-4046161 | None:intergenic |
| GAGGAGGAACTACTAGACTA+AGG | 0.552783 | 1.3:+4046956 | MS.gene67133:CDS |
| GGACTCCCTCAAAGAGCCAT+AGG | 0.555114 | 1.3:-4046789 | None:intergenic |
| AGCTCGAAGGAAGGTTCGAC+GGG | 0.557467 | 1.3:+4046313 | MS.gene67133:CDS |
| GGAGAAAACATGAATCTGAT+GGG | 0.557964 | 1.3:+4046561 | MS.gene67133:CDS |
| AGGAGTACCAGGATCTTTCA+CGG | 0.563273 | 1.3:-4045739 | None:intergenic |
| GATGAGTGTAATCATCTCCT+TGG | 0.564451 | 1.3:-4046364 | None:intergenic |
| CAGCGGTAGAAGTGTTTGCT+CGG | 0.566546 | 1.3:+4046540 | MS.gene67133:CDS |
| GCGAAACAGAATTTCTAAGA+TGG | 0.572825 | 1.3:+4046598 | MS.gene67133:CDS |
| TGAATCTGATGGGGTTGTAG+AGG | 0.574908 | 1.3:+4046571 | MS.gene67133:CDS |
| CTTAACCTTGTACATTCTCA+GGG | 0.583649 | 1.3:+4045897 | MS.gene67133:CDS |
| ACTCAAACCCGCAGTTCACC+AGG | 0.588096 | 1.3:+4046121 | MS.gene67133:CDS |
| ACCGGCTAGGGAATCATCCA+AGG | 0.589884 | 1.3:-4046729 | None:intergenic |
| AAGCTCGAAGGAAGGTTCGA+CGG | 0.590519 | 1.3:+4046312 | MS.gene67133:CDS |
| GTACAAAATTGAGGAATGCC+TGG | 0.591522 | 1.3:-4046139 | None:intergenic |
| TTAGCCGAAAGTTAAAACAA+AGG | 0.594581 | 1.3:+4045991 | MS.gene67133:CDS |
| TGCTGCCCTGAGAATGTACA+AGG | 0.606533 | 1.3:-4045902 | None:intergenic |
| AGAAAATGAAGCTCGAAGGA+AGG | 0.608118 | 1.3:+4046304 | MS.gene67133:CDS |
| TCATTGGGTTTGCAGTCAGG+AGG | 0.613410 | 1.3:+4046937 | MS.gene67133:CDS |
| CTGATGGGGTTGTAGAGGAG+AGG | 0.618513 | 1.3:+4046576 | MS.gene67133:CDS |
| ATGTTTCCTTGCTACCATTG+CGG | 0.621096 | 1.3:-4046406 | None:intergenic |
| TATTAGAAAATGAAGCTCGA+AGG | 0.626230 | 1.3:+4046300 | MS.gene67133:CDS |
| CAAAGCCTATTAGTGATAGT+CGG | 0.628800 | 1.3:+4046045 | MS.gene67133:CDS |
| CTTTCGGCTAATAATACCAG+TGG | 0.640543 | 1.3:-4045979 | None:intergenic |
| AGATCTCAACAGACAAAGTG+AGG | 0.645135 | 1.3:+4046469 | MS.gene67133:CDS |
| GGATCCTCTATTGAGTCATG+AGG | 0.655843 | 1.3:+4046841 | MS.gene67133:CDS |
| ACCCAACAACACAACTAAGG+AGG | 0.658812 | 1.3:+4046904 | MS.gene67133:CDS |
| TGTACCCAGTAAGATGAGCG+AGG | 0.672269 | 1.3:+4046157 | MS.gene67133:CDS |
| GAGAAAACATGAATCTGATG+GGG | 0.672708 | 1.3:+4046562 | MS.gene67133:CDS |
| GGTCGATCCAACTTTAGACA+TGG | 0.677113 | 1.3:+4046334 | MS.gene67133:CDS |
| CCAGATTGAAGATCTTCAGG+CGG | 0.689198 | 1.3:+4046622 | MS.gene67133:CDS |
| GAATGTACAAGGTTAAGCCA+CGG | 0.689970 | 1.3:-4045891 | None:intergenic |
| TTAGACATGGTAGCAGACCA+AGG | 0.691871 | 1.3:+4046347 | MS.gene67133:CDS |
| CGAGGATCCTTGATACAGAG+TGG | 0.694677 | 1.3:-4046668 | None:intergenic |
| GAGGAATGCCTGGTGAACTG+CGG | 0.708384 | 1.3:-4046129 | None:intergenic |
| TCTCAACAGACAAAGTGAGG+TGG | 0.714299 | 1.3:+4046472 | MS.gene67133:CDS |
| TGAGAATCAAAATAGTCACG+AGG | 0.736285 | 1.3:-4046686 | None:intergenic |
| TATGGAACATCCAAGAACAG+CGG | 0.741786 | 1.3:+4046523 | MS.gene67133:CDS |
| TGTACAAGGTTAAGCCACGG+TGG | 0.751849 | 1.3:-4045888 | None:intergenic |
| AGTACCAGGATCTTTCACGG+TGG | 0.772478 | 1.3:-4045736 | None:intergenic |
| AGGGGTCAAACAAACCACCG+TGG | 0.809962 | 1.3:+4045874 | MS.gene67133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTTAGATATAGATA+TGG | + | chr1.3:4046505-4046524 | MS.gene67133:CDS | 15.0% |
| !! | ATATCTAACATCAAAACTAT+GGG | + | chr1.3:4046812-4046831 | MS.gene67133:CDS | 20.0% |
| !! | TAAATCAGGTTAAATTTCAA+TGG | + | chr1.3:4046069-4046088 | MS.gene67133:CDS | 20.0% |
| !!! | AAAATCTGATATTTTATCTC+TGG | - | chr1.3:4046098-4046117 | None:intergenic | 20.0% |
| ! | CATATCTAACATCAAAACTA+TGG | + | chr1.3:4046811-4046830 | MS.gene67133:CDS | 25.0% |
| !!! | CAATCCTTTGTTTTAACTTT+CGG | - | chr1.3:4045998-4046017 | None:intergenic | 25.0% |
| !!! | CATAGTTTTGATGTTAGATA+TGG | - | chr1.3:4046813-4046832 | None:intergenic | 25.0% |
| AAGTCAAAAAAACACCAAAG+AGG | + | chr1.3:4045854-4045873 | MS.gene67133:CDS | 30.0% | |
| ACATCAAAACTATGGGATTA+AGG | + | chr1.3:4046819-4046838 | MS.gene67133:CDS | 30.0% | |
| AGTCAAAAAAACACCAAAGA+GGG | + | chr1.3:4045855-4045874 | MS.gene67133:CDS | 30.0% | |
| ATTAGGCTTGAAAACAAGTT+TGG | - | chr1.3:4045787-4045806 | None:intergenic | 30.0% | |
| CATCAAAACTATGGGATTAA+GGG | + | chr1.3:4046820-4046839 | MS.gene67133:CDS | 30.0% | |
| CGAAAGTTAAAACAAAGGAT+TGG | + | chr1.3:4045996-4046015 | MS.gene67133:CDS | 30.0% | |
| TATTAGAAAATGAAGCTCGA+AGG | + | chr1.3:4046300-4046319 | MS.gene67133:CDS | 30.0% | |
| TGTTGTTGGGTAATATATCA+AGG | - | chr1.3:4046895-4046914 | None:intergenic | 30.0% | |
| TTAGCCGAAAGTTAAAACAA+AGG | + | chr1.3:4045991-4046010 | MS.gene67133:CDS | 30.0% | |
| TTAGGCTTGAAAACAAGTTT+GGG | - | chr1.3:4045786-4045805 | None:intergenic | 30.0% | |
| TTGTTTGATGTTGGATCATT+AGG | - | chr1.3:4045804-4045823 | None:intergenic | 30.0% | |
| TTTAACCGACTATCACTAAT+AGG | - | chr1.3:4046053-4046072 | None:intergenic | 30.0% | |
| ! | AAGATGCAATTTAAGTTCTG+AGG | + | chr1.3:4046763-4046782 | MS.gene67133:CDS | 30.0% |
| !!! | GTTGCTTTTAAGTTCCTTTA+TGG | + | chr1.3:4046863-4046882 | MS.gene67133:CDS | 30.0% |
| ATTACCCAACAACACAACTA+AGG | + | chr1.3:4046901-4046920 | MS.gene67133:CDS | 35.0% | |
| ATTTGTACCACTCTGTATCA+AGG | + | chr1.3:4046661-4046680 | MS.gene67133:CDS | 35.0% | |
| CAAAGCCTATTAGTGATAGT+CGG | + | chr1.3:4046045-4046064 | MS.gene67133:CDS | 35.0% | |
| CTTAACCTTGTACATTCTCA+GGG | + | chr1.3:4045897-4045916 | MS.gene67133:CDS | 35.0% | |
| GAGAAAACATGAATCTGATG+GGG | + | chr1.3:4046562-4046581 | MS.gene67133:CDS | 35.0% | |
| GGAGAAAACATGAATCTGAT+GGG | + | chr1.3:4046561-4046580 | MS.gene67133:CDS | 35.0% | |
| GTCAAAAAAACACCAAAGAG+GGG | + | chr1.3:4045856-4045875 | MS.gene67133:CDS | 35.0% | |
| TAGTGATAGTCGGTTAAATC+AGG | + | chr1.3:4046055-4046074 | MS.gene67133:CDS | 35.0% | |
| TATCAAGGCACAATCCATAA+AGG | - | chr1.3:4046880-4046899 | None:intergenic | 35.0% | |
| TCTTACTGGGTACAAAATTG+AGG | - | chr1.3:4046151-4046170 | None:intergenic | 35.0% | |
| TGAGAATCAAAATAGTCACG+AGG | - | chr1.3:4046689-4046708 | None:intergenic | 35.0% | |
| TTTCAGATCTTCATGTTTGC+CGG | + | chr1.3:4045949-4045968 | MS.gene67133:CDS | 35.0% | |
| ! | GCGAAACAGAATTTCTAAGA+TGG | + | chr1.3:4046598-4046617 | MS.gene67133:CDS | 35.0% |
| ! | TTTCACGGTGGATTTGTATT+TGG | - | chr1.3:4045727-4045746 | None:intergenic | 35.0% |
| !! | CTCAGATACAGAGTATTTTG+AGG | - | chr1.3:4046437-4046456 | None:intergenic | 35.0% |
| !! | TGAAGCTTGTTGTTTGATGT+TGG | - | chr1.3:4045813-4045832 | None:intergenic | 35.0% |
| !!! | GCATCTTATTTTCTCCTTAC+CGG | - | chr1.3:4046750-4046769 | None:intergenic | 35.0% |
| ACACTCATCTTCCTGATCAT+GGG | + | chr1.3:4046378-4046397 | MS.gene67133:CDS | 40.0% | |
| AGAAAATGAAGCTCGAAGGA+AGG | + | chr1.3:4046304-4046323 | MS.gene67133:CDS | 40.0% | |
| AGATCTCAACAGACAAAGTG+AGG | + | chr1.3:4046469-4046488 | MS.gene67133:CDS | 40.0% | |
| AGCTAACGCAGTAAAAACCT+TGG | + | chr1.3:4046712-4046731 | MS.gene67133:CDS | 40.0% | |
| AGGAGGAACTACTAGATCAT+TGG | + | chr1.3:4046921-4046940 | MS.gene67133:CDS | 40.0% | |
| ATGTTTCCTTGCTACCATTG+CGG | - | chr1.3:4046409-4046428 | None:intergenic | 40.0% | |
| CGAGTCAATTTGATTACACC+AGG | - | chr1.3:4045762-4045781 | None:intergenic | 40.0% | |
| CGGAGAAAACATGAATCTGA+TGG | + | chr1.3:4046560-4046579 | MS.gene67133:CDS | 40.0% | |
| CTTTCGGCTAATAATACCAG+TGG | - | chr1.3:4045982-4046001 | None:intergenic | 40.0% | |
| GAATGTACAAGGTTAAGCCA+CGG | - | chr1.3:4045894-4045913 | None:intergenic | 40.0% | |
| GATGAGTGTAATCATCTCCT+TGG | - | chr1.3:4046367-4046386 | None:intergenic | 40.0% | |
| GCTTAACCTTGTACATTCTC+AGG | + | chr1.3:4045896-4045915 | MS.gene67133:CDS | 40.0% | |
| GGAGGAACTACTAGATCATT+GGG | + | chr1.3:4046922-4046941 | MS.gene67133:CDS | 40.0% | |
| GTACAAAATTGAGGAATGCC+TGG | - | chr1.3:4046142-4046161 | None:intergenic | 40.0% | |
| TACACTCATCTTCCTGATCA+TGG | + | chr1.3:4046377-4046396 | MS.gene67133:CDS | 40.0% | |
| TATGGAACATCCAAGAACAG+CGG | + | chr1.3:4046523-4046542 | MS.gene67133:CDS | 40.0% | |
| TTCAGATCTTCATGTTTGCC+GGG | + | chr1.3:4045950-4045969 | MS.gene67133:CDS | 40.0% | |
| TTCCTCCTTAGTTGTGTTGT+TGG | - | chr1.3:4046909-4046928 | None:intergenic | 40.0% | |
| ! | AGCTGCTGCAATAGCATTTT+TGG | - | chr1.3:4046228-4046247 | None:intergenic | 40.0% |
| ! | TCCTCCTTAGTTGTGTTGTT+GGG | - | chr1.3:4046908-4046927 | None:intergenic | 40.0% |
| ! | TCTGCTACCATGTCTAAAGT+TGG | - | chr1.3:4046344-4046363 | None:intergenic | 40.0% |
| !! | TATTTTCTCCTTACCGGCTA+GGG | - | chr1.3:4046744-4046763 | None:intergenic | 40.0% |
| !! | TTAAGTTCTGAGGAAGCCTA+TGG | + | chr1.3:4046773-4046792 | MS.gene67133:CDS | 40.0% |
| !! | TTATTTTCTCCTTACCGGCT+AGG | - | chr1.3:4046745-4046764 | None:intergenic | 40.0% |
| AAATCCACCGTGAAAGATCC+TGG | + | chr1.3:4045732-4045751 | MS.gene67133:CDS | 45.0% | |
| AACACTTCTACCGCTGTTCT+TGG | - | chr1.3:4046536-4046555 | None:intergenic | 45.0% | |
| ACCCAACAACACAACTAAGG+AGG | + | chr1.3:4046904-4046923 | MS.gene67133:CDS | 45.0% | |
| AGATCATTGGGTTTGCAGTC+AGG | + | chr1.3:4046934-4046953 | MS.gene67133:CDS | 45.0% | |
| AGATGAGCGAGGTAGATTTC+TGG | + | chr1.3:4046168-4046187 | MS.gene67133:CDS | 45.0% | |
| ATCTACCTCGCTCATCTTAC+TGG | - | chr1.3:4046165-4046184 | None:intergenic | 45.0% | |
| CAAAGTGAGGTGGTTCTTGA+AGG | + | chr1.3:4046482-4046501 | MS.gene67133:CDS | 45.0% | |
| CCAGATTGAAGATCTTCAGG+CGG | + | chr1.3:4046622-4046641 | MS.gene67133:CDS | 45.0% | |
| GCAACCTCATGACTCAATAG+AGG | - | chr1.3:4046848-4046867 | None:intergenic | 45.0% | |
| GGATCCTCTATTGAGTCATG+AGG | + | chr1.3:4046841-4046860 | MS.gene67133:CDS | 45.0% | |
| GGTCCAGATTGAAGATCTTC+AGG | + | chr1.3:4046619-4046638 | MS.gene67133:CDS | 45.0% | |
| GGTCGATCCAACTTTAGACA+TGG | + | chr1.3:4046334-4046353 | MS.gene67133:CDS | 45.0% | |
| TAATACCAGTGGCGAATTCC+CGG | - | chr1.3:4045971-4045990 | None:intergenic | 45.0% | |
| TCTACCTCGCTCATCTTACT+GGG | - | chr1.3:4046164-4046183 | None:intergenic | 45.0% | |
| TCTCAACAGACAAAGTGAGG+TGG | + | chr1.3:4046472-4046491 | MS.gene67133:CDS | 45.0% | |
| TGAATCTGATGGGGTTGTAG+AGG | + | chr1.3:4046571-4046590 | MS.gene67133:CDS | 45.0% | |
| TTAGACATGGTAGCAGACCA+AGG | + | chr1.3:4046347-4046366 | MS.gene67133:CDS | 45.0% | |
| TTGCGGAAAATCCCATGATC+AGG | - | chr1.3:4046392-4046411 | None:intergenic | 45.0% | |
| ! | GATCATGGGATTTTCCGCAA+TGG | + | chr1.3:4046392-4046411 | MS.gene67133:CDS | 45.0% |
| ! | GATTTTCCGCAATGGTAGCA+AGG | + | chr1.3:4046400-4046419 | MS.gene67133:CDS | 45.0% |
| !! | AGGAGTACCAGGATCTTTCA+CGG | - | chr1.3:4045742-4045761 | None:intergenic | 45.0% |
| !! | TGGTTTGTTTGACCCCTCTT+TGG | - | chr1.3:4045871-4045890 | None:intergenic | 45.0% |
| !! | TTGATTACACCAGGAGTACC+AGG | - | chr1.3:4045753-4045772 | None:intergenic | 45.0% |
| AAGCTCGAAGGAAGGTTCGA+CGG | + | chr1.3:4046312-4046331 | MS.gene67133:CDS | 50.0% | |
| ACCTTGGATGATTCCCTAGC+CGG | + | chr1.3:4046728-4046747 | MS.gene67133:CDS | 50.0% | |
| AGGAAGCCTATGGCTCTTTG+AGG | + | chr1.3:4046783-4046802 | MS.gene67133:CDS | 50.0% | |
| AGTACCAGGATCTTTCACGG+TGG | - | chr1.3:4045739-4045758 | None:intergenic | 50.0% | |
| CCGCCTGAAGATCTTCAATC+TGG | - | chr1.3:4046625-4046644 | None:intergenic | 50.0% | |
| CGAGGATCCTTGATACAGAG+TGG | - | chr1.3:4046671-4046690 | None:intergenic | 50.0% | |
| GGAAGCCTATGGCTCTTTGA+GGG | + | chr1.3:4046784-4046803 | MS.gene67133:CDS | 50.0% | |
| GTGAAAGATCCTGGTACTCC+TGG | + | chr1.3:4045741-4045760 | MS.gene67133:CDS | 50.0% | |
| TCATTGGGTTTGCAGTCAGG+AGG | + | chr1.3:4046937-4046956 | MS.gene67133:CDS | 50.0% | |
| TGCTGCCCTGAGAATGTACA+AGG | - | chr1.3:4045905-4045924 | None:intergenic | 50.0% | |
| TGTACAAGGTTAAGCCACGG+TGG | - | chr1.3:4045891-4045910 | None:intergenic | 50.0% | |
| TGTACCCAGTAAGATGAGCG+AGG | + | chr1.3:4046157-4046176 | MS.gene67133:CDS | 50.0% | |
| !! | CAGCGGTAGAAGTGTTTGCT+CGG | + | chr1.3:4046540-4046559 | MS.gene67133:CDS | 50.0% |
| ACCGGCTAGGGAATCATCCA+AGG | - | chr1.3:4046732-4046751 | None:intergenic | 55.0% | |
| ACTCAAACCCGCAGTTCACC+AGG | + | chr1.3:4046121-4046140 | MS.gene67133:CDS | 55.0% | |
| AGCTCGAAGGAAGGTTCGAC+GGG | + | chr1.3:4046313-4046332 | MS.gene67133:CDS | 55.0% | |
| AGGAATGCCTGGTGAACTGC+GGG | - | chr1.3:4046131-4046150 | None:intergenic | 55.0% | |
| AGGGGTCAAACAAACCACCG+TGG | + | chr1.3:4045874-4045893 | MS.gene67133:CDS | 55.0% | |
| CTGATGGGGTTGTAGAGGAG+AGG | + | chr1.3:4046576-4046595 | MS.gene67133:CDS | 55.0% | |
| GAGGAATGCCTGGTGAACTG+CGG | - | chr1.3:4046132-4046151 | None:intergenic | 55.0% | |
| GGACTCCCTCAAAGAGCCAT+AGG | - | chr1.3:4046792-4046811 | None:intergenic | 55.0% | |
| GGATGATTCCCTAGCCGGTA+AGG | + | chr1.3:4046733-4046752 | MS.gene67133:CDS | 55.0% | |
| TGCTATTGCAGCAGCTGCTG+AGG | + | chr1.3:4046232-4046251 | MS.gene67133:CDS | 55.0% | |
| TTGGGTTTGCAGTCAGGAGG+AGG | + | chr1.3:4046940-4046959 | MS.gene67133:CDS | 55.0% | |
| GTTTGCCGGGAATTCGCCAC+TGG | + | chr1.3:4045963-4045982 | MS.gene67133:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 4045687 | 4046976 | 4045687 | ID=MS.gene67133 |
| chr1.3 | mRNA | 4045687 | 4046976 | 4045687 | ID=MS.gene67133.t1;Parent=MS.gene67133 |
| chr1.3 | exon | 4045687 | 4046976 | 4045687 | ID=MS.gene67133.t1.exon1;Parent=MS.gene67133.t1 |
| chr1.3 | CDS | 4045687 | 4046976 | 4045687 | ID=cds.MS.gene67133.t1;Parent=MS.gene67133.t1 |
| Gene Sequence |
| Protein sequence |
