Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67199.t1 | AES61869.1 | 63 | 146 | 30 | 2 | 11 | 156 | 1 | 122 | 2.90E-38 | 168.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67199.t1 | Q8W4H1 | 57.9 | 38 | 16 | 0 | 14 | 51 | 13 | 50 | 3.0e-07 | 56.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67199.t1 | G7I2W4 | 63.0 | 146 | 30 | 2 | 11 | 156 | 1 | 122 | 2.1e-38 | 168.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene67199.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67199.t1 | MTR_1g089830 | 64.667 | 150 | 29 | 1 | 11 | 160 | 1 | 126 | 4.83e-60 | 183 |
MS.gene67199.t1 | MTR_1g045040 | 59.732 | 149 | 41 | 1 | 11 | 159 | 1 | 130 | 3.77e-47 | 150 |
MS.gene67199.t1 | MTR_1g075130 | 80.000 | 85 | 11 | 2 | 82 | 164 | 5 | 85 | 3.95e-32 | 110 |
MS.gene67199.t1 | MTR_8g089170 | 36.145 | 166 | 71 | 3 | 13 | 158 | 4 | 154 | 1.44e-26 | 98.6 |
MS.gene67199.t1 | MTR_8g089130 | 35.366 | 164 | 79 | 3 | 13 | 159 | 4 | 157 | 7.50e-26 | 96.7 |
MS.gene67199.t1 | MTR_8g039350 | 70.455 | 44 | 13 | 0 | 13 | 56 | 14 | 57 | 3.26e-15 | 66.6 |
MS.gene67199.t1 | MTR_4g028990 | 48.684 | 76 | 38 | 1 | 85 | 160 | 23 | 97 | 9.55e-15 | 66.2 |
MS.gene67199.t1 | MTR_5g013370 | 54.902 | 51 | 22 | 1 | 14 | 64 | 13 | 62 | 1.81e-11 | 61.6 |
MS.gene67199.t1 | MTR_5g013370 | 54.902 | 51 | 22 | 1 | 14 | 64 | 13 | 62 | 2.51e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 25 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTTGTGGTTTACATTTCA+AGG | 0.339580 | 1.2:+57900357 | MS.gene67199:CDS |
CACAATATTGGCGTCTCATA+TGG | 0.373407 | 1.2:-57900331 | None:intergenic |
CCACAAGCGTTACACAATAT+TGG | 0.380139 | 1.2:-57900343 | None:intergenic |
CCAAGACCTATTTCATTGCT+TGG | 0.382873 | 1.2:-57902514 | None:intergenic |
ATTGGTGTCAACGTCTCTAT+TGG | 0.384421 | 1.2:-57902367 | None:intergenic |
TTTCAACAGAAACTCAAGTT+TGG | 0.389578 | 1.2:+57900299 | MS.gene67199:CDS |
TTTATACCAAGCAATGAAAT+AGG | 0.394603 | 1.2:+57902508 | MS.gene67199:CDS |
AATCTTTCAAACCAAACTTC+AGG | 0.411413 | 1.2:+57900472 | MS.gene67199:CDS |
CCAAGCAATGAAATAGGTCT+TGG | 0.428532 | 1.2:+57902514 | MS.gene67199:CDS |
ATTGGTGTCGGCATCTCCAT+TGG | 0.472767 | 1.2:-57902349 | None:intergenic |
TCAAACAACAAAATATCGTC+AGG | 0.502407 | 1.2:-57902472 | None:intergenic |
TCTTGGATGCATTCGTCTAA+AGG | 0.502885 | 1.2:+57902531 | MS.gene67199:CDS |
CCAATATTGTGTAACGCTTG+TGG | 0.532300 | 1.2:+57900343 | MS.gene67199:CDS |
TGTTTATTTATCTGATAACA+TGG | 0.532451 | 1.2:+57900276 | MS.gene67199:CDS |
GAAACTCAAGTTTGGCGCAA+AGG | 0.544030 | 1.2:+57900307 | MS.gene67199:CDS |
ATTGGTGTCAATGTCTCCAT+TGG | 0.552350 | 1.2:-57902385 | None:intergenic |
GGTTTACATTTCAAGGCGAA+AGG | 0.567422 | 1.2:+57900364 | MS.gene67199:CDS |
GTCAACGTCTCTATTGGTGT+CGG | 0.570505 | 1.2:-57902361 | None:intergenic |
AATAGAGACGTTGACACCAA+TGG | 0.576098 | 1.2:+57902369 | MS.gene67199:CDS |
TCTTCGGGAGATAGTTAGCA+AGG | 0.579240 | 1.2:-57900390 | None:intergenic |
AATGGAGACATTGACACCAA+TGG | 0.594675 | 1.2:+57902387 | MS.gene67199:CDS |
GATACTTCTACAAATCAAGA+TGG | 0.599162 | 1.2:+57902559 | MS.gene67199:CDS |
AGCCCTGCAAAATCAGTCAT+CGG | 0.602139 | 1.2:+57900414 | MS.gene67199:CDS |
GACTGTGATGCAGACACCAA+TGG | 0.608005 | 1.2:+57902333 | MS.gene67199:CDS |
CTTCGGGAGATAGTTAGCAA+GGG | 0.642252 | 1.2:-57900389 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATTAAGATTAAGATTA+GGG | - | chr1.2:57900586-57900605 | None:intergenic | 10.0% |
!! | ATATATTATATTAAGATATG+GGG | - | chr1.2:57900532-57900551 | None:intergenic | 10.0% |
!! | TATATATTAAGATTAAGATT+AGG | - | chr1.2:57900587-57900606 | None:intergenic | 10.0% |
!! | AAAAATACAAATTTATGGAA+CGG | + | chr1.2:57902265-57902284 | MS.gene67199:intron | 15.0% |
!! | GAAAAATAGATGATATAAAA+TGG | - | chr1.2:57901191-57901210 | None:intergenic | 15.0% |
!! | TTGAAATATGAAAATTCATA+TGG | - | chr1.2:57901412-57901431 | None:intergenic | 15.0% |
!!! | CAGTTAATTTTTATTATTAG+CGG | + | chr1.2:57900811-57900830 | MS.gene67199:intron | 15.0% |
!!! | TAGTTCTTTTTCATTTTTTT+TGG | + | chr1.2:57900849-57900868 | MS.gene67199:intron | 15.0% |
!!! | TTAAAATTTCATTAGCTTAA+AGG | - | chr1.2:57901560-57901579 | None:intergenic | 15.0% |
!!! | TTTAAGCTAATGAAATTTTA+AGG | + | chr1.2:57901559-57901578 | MS.gene67199:intron | 15.0% |
!! | AAAAGAACTACTATCAATAA+AGG | - | chr1.2:57900839-57900858 | None:intergenic | 20.0% |
!! | AAATAGATGATATAAAATGG+AGG | - | chr1.2:57901188-57901207 | None:intergenic | 20.0% |
!! | AATAGATGATATAAAATGGA+GGG | - | chr1.2:57901187-57901206 | None:intergenic | 20.0% |
!! | ATATGAGCATGAATATTATA+AGG | + | chr1.2:57901773-57901792 | MS.gene67199:intron | 20.0% |
!! | CACCAATTTAAACTATTAAT+AGG | - | chr1.2:57901006-57901025 | None:intergenic | 20.0% |
!! | CTCCTATTAATAGTTTAAAT+TGG | + | chr1.2:57901001-57901020 | MS.gene67199:intron | 20.0% |
!! | GTGTGAAAAATACAAATTTA+TGG | + | chr1.2:57902260-57902279 | MS.gene67199:intron | 20.0% |
!! | TATTTCAACAAAAATTGAAG+TGG | - | chr1.2:57900711-57900730 | None:intergenic | 20.0% |
!! | TGTTTATTTATCTGATAACA+TGG | + | chr1.2:57900276-57900295 | MS.gene67199:CDS | 20.0% |
!! | TTAAATGAATTCTCTTTCAT+TGG | - | chr1.2:57901975-57901994 | None:intergenic | 20.0% |
!!! | AAATTTTCAACTACAAAACA+AGG | - | chr1.2:57901897-57901916 | None:intergenic | 20.0% |
!!! | AATTTTTATTACCTGAAGTT+TGG | - | chr1.2:57900486-57900505 | None:intergenic | 20.0% |
!!! | ACTTTTTTCTTTAATTTTGC+CGG | + | chr1.2:57900967-57900986 | MS.gene67199:intron | 20.0% |
!!! | TTAGTCATGTATTTCAATTT+TGG | - | chr1.2:57900743-57900762 | None:intergenic | 20.0% |
!!! | TTTTCATATTTCAAGTTAGA+CGG | + | chr1.2:57901418-57901437 | MS.gene67199:intron | 20.0% |
!!! | TTTTGTAGTTGAAAATTTGA+TGG | + | chr1.2:57901899-57901918 | MS.gene67199:intron | 20.0% |
! | AATACTAGCTAATGTGTATA+AGG | - | chr1.2:57902148-57902167 | None:intergenic | 25.0% |
! | ACAAATATCTCCATAAATGT+AGG | - | chr1.2:57902069-57902088 | None:intergenic | 25.0% |
! | AGTGATAGCAAATGTAAAAA+TGG | + | chr1.2:57901862-57901881 | MS.gene67199:intron | 25.0% |
! | TATTAATAGGAGAAACAAAG+AGG | - | chr1.2:57900993-57901012 | None:intergenic | 25.0% |
! | TTTATACCAAGCAATGAAAT+AGG | + | chr1.2:57902508-57902527 | MS.gene67199:CDS | 25.0% |
!! | ATAACCTTTTATGAATGCAT+TGG | + | chr1.2:57901441-57901460 | MS.gene67199:intron | 25.0% |
!! | TATAAGGAACACCTTTTTAA+TGG | + | chr1.2:57901789-57901808 | MS.gene67199:intron | 25.0% |
!!! | ACAAATGAACGCTTTTTTTA+AGG | - | chr1.2:57902298-57902317 | None:intergenic | 25.0% |
AAAATTAACTGTTGTGAGAG+AGG | - | chr1.2:57900802-57900821 | None:intergenic | 30.0% | |
AAATCCTCACACCATTAAAA+AGG | - | chr1.2:57901803-57901822 | None:intergenic | 30.0% | |
AACACCAATGCATTCATAAA+AGG | - | chr1.2:57901448-57901467 | None:intergenic | 30.0% | |
AATCTTTCAAACCAAACTTC+AGG | + | chr1.2:57900472-57900491 | MS.gene67199:CDS | 30.0% | |
AATGACAACTAAAGAAGAGT+AGG | + | chr1.2:57902097-57902116 | MS.gene67199:intron | 30.0% | |
ACTCTATATGCCTACATTTA+TGG | + | chr1.2:57902056-57902075 | MS.gene67199:intron | 30.0% | |
AGTTGTAAAGTGTAAGCATA+GGG | - | chr1.2:57900676-57900695 | None:intergenic | 30.0% | |
CACATTAGCTAGTATTCTTA+TGG | + | chr1.2:57902152-57902171 | MS.gene67199:intron | 30.0% | |
CATAGTATGAATGAAGTCTT+TGG | - | chr1.2:57901833-57901852 | None:intergenic | 30.0% | |
GATACTTCTACAAATCAAGA+TGG | + | chr1.2:57902559-57902578 | MS.gene67199:CDS | 30.0% | |
GATATAAAATGGAGGGAAAA+TGG | - | chr1.2:57901180-57901199 | None:intergenic | 30.0% | |
TAAAATCCATGCACTAGAAA+AGG | - | chr1.2:57901213-57901232 | None:intergenic | 30.0% | |
TAGTTGTAAAGTGTAAGCAT+AGG | - | chr1.2:57900677-57900696 | None:intergenic | 30.0% | |
TCAAACAACAAAATATCGTC+AGG | - | chr1.2:57902475-57902494 | None:intergenic | 30.0% | |
TTCTATCATTAACTCACCTT+TGG | - | chr1.2:57901661-57901680 | None:intergenic | 30.0% | |
TTGCAATTTCTTTGATGCTA+GGG | + | chr1.2:57901688-57901707 | MS.gene67199:intron | 30.0% | |
TTTCAACAGAAACTCAAGTT+TGG | + | chr1.2:57900299-57900318 | MS.gene67199:CDS | 30.0% | |
TTTGCAATTTCTTTGATGCT+AGG | + | chr1.2:57901687-57901706 | MS.gene67199:intron | 30.0% | |
! | GATAACTTGTGCTTTACATT+TGG | - | chr1.2:57901158-57901177 | None:intergenic | 30.0% |
! | TATAGATTGAGAAGCTTTTG+TGG | - | chr1.2:57902421-57902440 | None:intergenic | 30.0% |
! | TGTCGTTAATGTGGATTAAA+GGG | + | chr1.2:57901375-57901394 | MS.gene67199:intron | 30.0% |
! | TTGTCGTTAATGTGGATTAA+AGG | + | chr1.2:57901374-57901393 | MS.gene67199:intron | 30.0% |
! | TTTTCACACGTGAGAAAATA+AGG | - | chr1.2:57902249-57902268 | None:intergenic | 30.0% |
!! | ATTTTTCCTTTTCTAGTGCA+TGG | + | chr1.2:57901204-57901223 | MS.gene67199:intron | 30.0% |
!! | GAGTTGAACTTTTGAAGAAT+TGG | + | chr1.2:57901727-57901746 | MS.gene67199:intron | 30.0% |
!! | TTTTATGAATGCATTGGTGT+TGG | + | chr1.2:57901447-57901466 | MS.gene67199:intron | 30.0% |
!!! | CATATGCTTTTTCAATGTCA+AGG | - | chr1.2:57900441-57900460 | None:intergenic | 30.0% |
!!! | CTTGCAAACTCTTGTTTTTA+GGG | - | chr1.2:57900638-57900657 | None:intergenic | 30.0% |
AATGACCTCAATGGTTTGAT+AGG | - | chr1.2:57901952-57901971 | None:intergenic | 35.0% | |
AATTGGTGAGTCTTTCCTTA+CGG | + | chr1.2:57901744-57901763 | MS.gene67199:intron | 35.0% | |
CAAAAATTGAAGTGGCATAG+TGG | - | chr1.2:57900703-57900722 | None:intergenic | 35.0% | |
CATTCATACTCTACTTGAGT+AGG | - | chr1.2:57901622-57901641 | None:intergenic | 35.0% | |
CATTTAAGTAGACACGACAT+TGG | + | chr1.2:57901988-57902007 | MS.gene67199:intron | 35.0% | |
CCTAAAAACAAGAGTTTGCA+AGG | + | chr1.2:57900636-57900655 | MS.gene67199:intron | 35.0% | |
TATGAGAGTTGTCGTTAATG+TGG | + | chr1.2:57901366-57901385 | MS.gene67199:intron | 35.0% | |
TTTCATTGGAATGACCTCAA+TGG | - | chr1.2:57901961-57901980 | None:intergenic | 35.0% | |
! | AACACCTTTTTAATGGTGTG+AGG | + | chr1.2:57901796-57901815 | MS.gene67199:intron | 35.0% |
! | ACACTGCTAAAGTTTTCTAC+GGG | - | chr1.2:57901312-57901331 | None:intergenic | 35.0% |
! | ATGGATTTTATTGTGGTGGT+TGG | + | chr1.2:57901223-57901242 | MS.gene67199:intron | 35.0% |
! | CACACTGCTAAAGTTTTCTA+CGG | - | chr1.2:57901313-57901332 | None:intergenic | 35.0% |
! | CTAGTGCATGGATTTTATTG+TGG | + | chr1.2:57901216-57901235 | MS.gene67199:intron | 35.0% |
! | TGGATTTTATTGTGGTGGTT+GGG | + | chr1.2:57901224-57901243 | MS.gene67199:intron | 35.0% |
! | TTTTGTGGAAACTCATCCAT+TGG | - | chr1.2:57902406-57902425 | None:intergenic | 35.0% |
!! | AAAAGCGTTCATTTGTAGAG+AGG | + | chr1.2:57902302-57902321 | MS.gene67199:intron | 35.0% |
!!! | CCTTGCAAACTCTTGTTTTT+AGG | - | chr1.2:57900639-57900658 | None:intergenic | 35.0% |
AAAATGTCCAAATGGACCCA+TGG | - | chr1.2:57901275-57901294 | None:intergenic | 40.0% | |
AATAGAGACGTTGACACCAA+TGG | + | chr1.2:57902369-57902388 | MS.gene67199:CDS | 40.0% | |
AATAGGAGAAACAAAGAGGC+CGG | - | chr1.2:57900989-57901008 | None:intergenic | 40.0% | |
AATGGAGACATTGACACCAA+TGG | + | chr1.2:57902387-57902406 | MS.gene67199:CDS | 40.0% | |
CACAATATTGGCGTCTCATA+TGG | - | chr1.2:57900334-57900353 | None:intergenic | 40.0% | |
CCAAGACCTATTTCATTGCT+TGG | - | chr1.2:57902517-57902536 | None:intergenic | 40.0% | |
CCAAGCAATGAAATAGGTCT+TGG | + | chr1.2:57902514-57902533 | MS.gene67199:CDS | 40.0% | |
CCAATATTGTGTAACGCTTG+TGG | + | chr1.2:57900343-57900362 | MS.gene67199:CDS | 40.0% | |
CCACAAGCGTTACACAATAT+TGG | - | chr1.2:57900346-57900365 | None:intergenic | 40.0% | |
CGCTTGTGGTTTACATTTCA+AGG | + | chr1.2:57900357-57900376 | MS.gene67199:CDS | 40.0% | |
GGTTACCCAAAATGTCCAAA+TGG | - | chr1.2:57901283-57901302 | None:intergenic | 40.0% | |
GGTTTACATTTCAAGGCGAA+AGG | + | chr1.2:57900364-57900383 | MS.gene67199:CDS | 40.0% | |
TCTTGGATGCATTCGTCTAA+AGG | + | chr1.2:57902531-57902550 | MS.gene67199:CDS | 40.0% | |
TGCTCATATCATGTACCGTA+AGG | - | chr1.2:57901762-57901781 | None:intergenic | 40.0% | |
! | ATGGGTCCATTTGGACATTT+TGG | + | chr1.2:57901274-57901293 | MS.gene67199:intron | 40.0% |
! | GTGCATGGATTTTATTGTGG+TGG | + | chr1.2:57901219-57901238 | MS.gene67199:intron | 40.0% |
! | TGGGTCCATTTGGACATTTT+GGG | + | chr1.2:57901275-57901294 | MS.gene67199:intron | 40.0% |
!! | ATTGGTGTCAACGTCTCTAT+TGG | - | chr1.2:57902370-57902389 | None:intergenic | 40.0% |
!! | ATTGGTGTCAATGTCTCCAT+TGG | - | chr1.2:57902388-57902407 | None:intergenic | 40.0% |
!! | GTGGATTAAAGGGTGTTTGA+GGG | + | chr1.2:57901385-57901404 | MS.gene67199:intron | 40.0% |
!! | TGTGGATTAAAGGGTGTTTG+AGG | + | chr1.2:57901384-57901403 | MS.gene67199:intron | 40.0% |
ACCATATCAACGTCGTCCAA+AGG | + | chr1.2:57901642-57901661 | MS.gene67199:intron | 45.0% | |
ACCTTTGGACGACGTTGATA+TGG | - | chr1.2:57901646-57901665 | None:intergenic | 45.0% | |
AGCCCTGCAAAATCAGTCAT+CGG | + | chr1.2:57900414-57900433 | MS.gene67199:CDS | 45.0% | |
AGGAAACTGCTAAGACGGTT+GGG | - | chr1.2:57900782-57900801 | None:intergenic | 45.0% | |
AGTTTAAGCACGGGTTTCCA+TGG | + | chr1.2:57901255-57901274 | MS.gene67199:intron | 45.0% | |
AGTTTGCAAGGAATCGAACC+AGG | + | chr1.2:57900648-57900667 | MS.gene67199:intron | 45.0% | |
CTTCGGGAGATAGTTAGCAA+GGG | - | chr1.2:57900392-57900411 | None:intergenic | 45.0% | |
GAAACTCAAGTTTGGCGCAA+AGG | + | chr1.2:57900307-57900326 | MS.gene67199:CDS | 45.0% | |
GACCTCAATGGTTTGATAGG+TGG | - | chr1.2:57901949-57901968 | None:intergenic | 45.0% | |
GAGAGAGGAAACTGCTAAGA+CGG | - | chr1.2:57900787-57900806 | None:intergenic | 45.0% | |
GCATGGTGTAGTTTAAGCAC+GGG | + | chr1.2:57901246-57901265 | MS.gene67199:intron | 45.0% | |
GGCATGGTGTAGTTTAAGCA+CGG | + | chr1.2:57901245-57901264 | MS.gene67199:intron | 45.0% | |
GTCAACGTCTCTATTGGTGT+CGG | - | chr1.2:57902364-57902383 | None:intergenic | 45.0% | |
GTTTAAGCACGGGTTTCCAT+GGG | + | chr1.2:57901256-57901275 | MS.gene67199:intron | 45.0% | |
TACAAAACACGTGCATCGCA+CGG | + | chr1.2:57901115-57901134 | MS.gene67199:intron | 45.0% | |
TCTTCGGGAGATAGTTAGCA+AGG | - | chr1.2:57900393-57900412 | None:intergenic | 45.0% | |
TGCCACCTATCAAACCATTG+AGG | + | chr1.2:57901944-57901963 | MS.gene67199:intron | 45.0% | |
TTTATTGTGGTGGTTGGGCA+TGG | + | chr1.2:57901229-57901248 | MS.gene67199:intron | 45.0% | |
! | AAGTGTAAGCATAGGGTACC+TGG | - | chr1.2:57900669-57900688 | None:intergenic | 45.0% |
! | TGATTTTGCAGGGCTCTCTT+CGG | - | chr1.2:57900409-57900428 | None:intergenic | 45.0% |
!! | AAAGTTTTCTACGGGTTGCG+TGG | - | chr1.2:57901304-57901323 | None:intergenic | 45.0% |
!! | GTCCGATGACTGATTTTGCA+GGG | - | chr1.2:57900419-57900438 | None:intergenic | 45.0% |
!! | ATATATATTATATTAAGATA+TGG | - | chr1.2:57900534-57900553 | None:intergenic | 5.0% |
!! | TATATATTATATTAAGATAT+GGG | - | chr1.2:57900533-57900552 | None:intergenic | 5.0% |
ACAAAACACGTGCATCGCAC+GGG | + | chr1.2:57901116-57901135 | MS.gene67199:intron | 50.0% | |
GACTGTGATGCAGACACCAA+TGG | + | chr1.2:57902333-57902352 | MS.gene67199:CDS | 50.0% | |
GAGGAAACTGCTAAGACGGT+TGG | - | chr1.2:57900783-57900802 | None:intergenic | 50.0% | |
GGAAACTGCTAAGACGGTTG+GGG | - | chr1.2:57900781-57900800 | None:intergenic | 50.0% | |
! | GATTTTGCAGGGCTCTCTTC+GGG | - | chr1.2:57900408-57900427 | None:intergenic | 50.0% |
!! | ATTGGTGTCGGCATCTCCAT+TGG | - | chr1.2:57902352-57902371 | None:intergenic | 50.0% |
!! | GGTCCGATGACTGATTTTGC+AGG | - | chr1.2:57900420-57900439 | None:intergenic | 50.0% |
CGGGTTTCCATGGGTCCATT+TGG | + | chr1.2:57901265-57901284 | MS.gene67199:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 57900265 | 57902585 | 57900265 | ID=MS.gene67199 |
chr1.2 | mRNA | 57900265 | 57902585 | 57900265 | ID=MS.gene67199.t1;Parent=MS.gene67199 |
chr1.2 | exon | 57900265 | 57900493 | 57900265 | ID=MS.gene67199.t1.exon1;Parent=MS.gene67199.t1 |
chr1.2 | CDS | 57900265 | 57900493 | 57900265 | ID=cds.MS.gene67199.t1;Parent=MS.gene67199.t1 |
chr1.2 | exon | 57902320 | 57902585 | 57902320 | ID=MS.gene67199.t1.exon2;Parent=MS.gene67199.t1 |
chr1.2 | CDS | 57902320 | 57902585 | 57902320 | ID=cds.MS.gene67199.t1;Parent=MS.gene67199.t1 |
Gene Sequence |
Protein sequence |