AlfalfaGEDB | MS.gene67274

M. sativa cultivar XinJiangDaYe / MS.gene67274

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67274.t1	AES98839.2	87.1	85	11	0	91	175	1	85	2.10E-34	155.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67274.t1	Q9LFQ3	46.2	65	33	2	100	164	51	113	3.6e-06	53.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67274.t1	G7JZR3	87.1	85	11	0	91	175	1	85	1.5e-34	155.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene67274.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67274.t1	MTR_5g073430	86.047	86	12	0	91	176	1	86	4.80e-50	157
MS.gene67274.t1	MTR_7g083950	62.025	79	30	0	91	169	2	80	1.51e-25	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 44 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCACAAGAGATTACA+AGG	0.479131	5.1:+56644675	MS.gene67274:CDS
AAATGACATTCTTCTTCAAC+AGG	0.416029	5.1:-56642720	None:intergenic
AACAGGAGTAGTATGTTGTT+CGG	0.484971	5.1:-56642703	None:intergenic
AAGAGTGCTTCTCGCTGGAT+CGG	0.534745	5.1:-56642753	None:intergenic
AAGGCAAGAGGAGATCAAAA+TGG	0.409826	5.1:+56642811	MS.gene67274:CDS
ACCAGCTGGCATGATGAGGA+AGG	0.612834	5.1:-56644782	None:intergenic
ACCTTCCTCATCATGCCAGC+TGG	0.479240	5.1:+56644781	MS.gene67274:CDS
AGAGGAGATCAAAATGGAAA+AGG	0.542153	5.1:+56642817	MS.gene67274:CDS
AGATGTAGGGAGGAGTATGA+AGG	0.589462	5.1:+56642792	MS.gene67274:CDS
AGGCATCAGGGTTTATTATT+CGG	0.287310	5.1:+56644751	MS.gene67274:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCACAAGAGATTACA+AGG	+	chr5.1:56644675-56644694	MS.gene67274:CDS	30.0%
AAACAAATCAAGGAGGAATA+TGG	+	chr5.1:56643221-56643240	MS.gene67274:intron	30.0%
AAATGACATTCTTCTTCAAC+AGG	-	chr5.1:56642723-56642742	None:intergenic	30.0%
GCTGGAAGAATTGATATAAT+AGG	+	chr5.1:56644697-56644716	MS.gene67274:CDS	30.0%
GTTAAACCCAAAACAAATCA+AGG	+	chr5.1:56643211-56643230	MS.gene67274:intron	30.0%
TAGATTTGAGGGATTATTCT+AGG	-	chr5.1:56643113-56643132	None:intergenic	30.0%
AAACCCAAAACAAATCAAGG+AGG	+	chr5.1:56643214-56643233	MS.gene67274:intron	35.0%
AACAGGAGTAGTATGTTGTT+CGG	-	chr5.1:56642706-56642725	None:intergenic	35.0%
AATCAAGGAGGAATATGGTA+TGG	+	chr5.1:56643226-56643245	MS.gene67274:intron	35.0%
ACTAACGATTCTAGTGAAAG+AGG	-	chr5.1:56644478-56644497	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	56642636	56644828	56642636	ID=MS.gene67274
chr5.1	mRNA	56642636	56644828	56642636	ID=MS.gene67274.t1;Parent=MS.gene67274
chr5.1	exon	56642636	56642905	56642636	ID=MS.gene67274.t1.exon1;Parent=MS.gene67274.t1
chr5.1	CDS	56642636	56642905	56642636	ID=cds.MS.gene67274.t1;Parent=MS.gene67274.t1
chr5.1	exon	56644568	56644828	56644568	ID=MS.gene67274.t1.exon2;Parent=MS.gene67274.t1
chr5.1	CDS	56644568	56644828	56644568	ID=cds.MS.gene67274.t1;Parent=MS.gene67274.t1

Gene Sequence

>MS.gene67274

ATGAGGCATGGAGCCAAGCCGGCAAGAAAGAGAACGACTAAGGCGCCCGCAAAAAGGTGGTTGTCAGCCGAACAACATACTACTCCTGTTGAAGAAGAATGTCATTTCGATCCCGAACCGATCCAGCGAGAAGCACTCTTGATCGATGTGCACGCTAGATGTAGGGAGGAGTATGAAGGCAAGAGGAGATCAAAATGGAAAAGGAGTGTTAATGAACCACCAAAGGAAACACCTGCTGAAAATGACAAGCGTGCTCAACAAGAAATGCACGTATAATAACATACTACTTTATTGTGCCTTTGAATATATATCTTCAATGTGTGACATGATCTGATATGGTGTGAATATATCTTTATGTGTCACTCAAAGATCTTTTTAATCTCATCATCTGTAGTAATAAGTACGGTTACAACTACTGTTAAGTTTTTTAATTTTTTGTTTTTACGTGAAACGGGAATCCTTTATGTTCAACTTCCTAGAATAATCCCTCAAATCTATTATGGGACCACAATGATTGACAAAACTCTCTTTGCAAAGCAGAATCGAACCAGGTGAAACCGCACTAGACCGAAATCGTTAAACCCAAAACAAATCAAGGAGGAATATGGTATGGTCGATTTTTGATTTATTGTTCATCCTTTTTTTTCATCGCCAGAACGTTTTTTTATTTTATTTTTTCCAGTAAATTGAGTTTAATCTTTTTCAAGAAGTTTGTTGTTGATTTTTATAATAATATATATAATTGCTCCTCTTATTGTAAAATCGTTCCTATTTCTACTATAATTAAAAAAGATTGTTTTCGACTTTTTTTGAAGGAAACGTTTGTTTTCGATTATTGATAACTAAATATCACAAATGATCATGTAATCCATTAAATTATAGATTTTAAAAGATTGTCGGAAGGCAAATTAAGTAAGTTTTAATCAAAAAAGATTAATTTGTTTAATAGATTAAGGATTAATTTAGTAGTATGTAACCAAAAAAAAATTTAGTAGTAGTTTTTTTTTTGAAGGAAAATTTAGTAGTAGTTTTTTTTTTGACAAGTAGTAGTAGTTGTATGGTAGTAGATTAATTTGTTTAATTAAATCATAATTGCTTTATCCGAATTTCACTCCTTCAAATCCAAATCTCAAACTTATCACTTTGTTTTTTCTTCTAGAAAAAAGATACGAAACAAAATTAGTTTAGATTACACTTAATTATATTTAACTTTACTATTATATAAGTAGCAAAAAGATGGGTTTTTCGCTATTTTTATTGCGCTAACGTTTGAGAATTATGAACGATGTTTTTTATGAAATTTTAATGTTGATTAAAAGTAAAAATATAATTTTTTTTTTGAGGAAAAAAGTAAAAATATAAATGTTTTTTGCTTTCAAATTATAACAAATCAAACTAATCATGATTATCTCTTTCAATGAAATAAAAAATATAACAAAATAATATAATCTATATTCTTATTTTTTTAATGACACCAACAACAATATTTATTATAGAAAGATCATTGTTGTTTAAGAGTATAATTGGGATAATGAAAAAGTAAGTATTGATACACTCATATATTTTGTTACACTTTTTAAATGATAAAGGAAAAAACTATACATTTGTGTTTGTTACATTTTTATTTTAATATTTAAATTTATTCTTATCTATTTGTTATATGTGTTATTTGTATTGAAAGTTGAGGGTATTTTTGGAAGAAAAAAATTCAACCCAAAAACGCTGAAATGGATAGTTTTCTTTTATTTATAGTATAAATAAGGTACTCCCCTAAAAAAATAACGTACTCTGAAATAGGGTTAACCTTCTCTCCCGTTTCTATTCCCGTAGCTTCTGAATCCTCTTTCACTAGAATCGTTAGTTTTTTTTGGTTTTATTATTTTGAATTGGAATTTGTAGTCTTACTGGATATTACTATTCTGAATAATAAAGATGAACATCCCTCGAAATTATTGCCATGAACATGCACTGGAGTATCTTCTTAAGGGAGTGAAACTTGCATCTCGGTACGATAACAGCATAAAGTACGATGAGTTTTTAAAACTCACAAGAGATTACAAGGCTGGAAGAATTGATATAATAGGCATCCAATCAAGAGTTAGTGGGATGCTTCAAAGGCATCAGGGTTTATTATTCGGATTCAACACCTTCCTCATCATGCCAGCTGGTTTGAACTCTTTCCATGGTACGTAA

Protein sequence

>MS.gene67274.t1

MRHGAKPARKRTTKAPAKRWLSAEQHTTPVEEECHFDPEPIQREALLIDVHARCREEYEGKRRSKWKRSVNEPPKETPAENDKRAQQEMHMNIPRNYCHEHALEYLLKGVKLASRYDNSIKYDEFLKLTRDYKAGRIDIIGIQSRVSGMLQRHQGLLFGFNTFLIMPAGLNSFHGT