AlfalfaGEDB | MS.gene67393

M. sativa cultivar XinJiangDaYe / MS.gene67393

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67393.t1	KEH30081.1	97.8	689	15	0	1	689	1	689	0.00E+00	1346.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67393.t1	Q9LX66	69.3	697	200	9	1	689	140	830	5.8e-270	931.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67393.t1	G7JSL9	97.8	689	15	0	1	689	152	840	0.0e+00	1346.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene67393.t1	MTR_4g061833	97.823	689	15	0	1	689	1	689	1401
MS.gene67393.t1	MTR_4g061833	97.823	689	15	0	1	689	152	840	1399
MS.gene67393.t1	MTR_4g061930	97.823	689	15	0	1	689	152	840	1399
MS.gene67393.t1	MTR_2g096160	73.963	699	171	5	1	689	150	847	1026
MS.gene67393.t1	MTR_2g080220	56.633	701	287	11	1	689	148	843	768
MS.gene67393.t1	MTR_8g037700	55.349	645	273	10	1	636	179	817	704
MS.gene67393.t1	MTR_6g048090	54.446	641	265	12	1	627	148	775	659
MS.gene67393.t1	MTR_1g100110	47.994	698	313	11	1	689	158	814	619
MS.gene67393.t1	MTR_2g030310	49.544	658	302	14	1	639	163	809	606
MS.gene67393.t1	MTR_2g030310	49.544	658	302	14	1	639	163	809	604

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene67393.t1	AT3G46290	69.154	697	201	9	1	689	140	830	958
MS.gene67393.t1	AT5G59700	66.810	699	214	9	1	689	139	829	903
MS.gene67393.t1	AT5G54380	55.402	722	275	15	1	689	148	855	740
MS.gene67393.t1	AT4G39110	52.580	717	295	15	2	689	178	878	694
MS.gene67393.t1	AT2G21480	50.640	703	324	10	2	689	177	871	679
MS.gene67393.t1	AT2G39360	50.714	700	310	12	1	689	140	815	674
MS.gene67393.t1	AT5G61350	51.067	703	286	15	1	660	154	841	658
MS.gene67393.t1	AT5G24010	50.642	701	312	13	1	689	146	824	652
MS.gene67393.t1	AT3G51550	46.443	745	336	19	1	689	158	895	597
MS.gene67393.t1	AT1G30570	47.546	652	321	9	1	638	165	809	594

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Find 160 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACATGGGTTCCTTTAT+CGG	0.276923	4.2:-42635845	MS.gene67393:CDS
AAAGCAGTGGAATTGTTCGA+CGG	0.680677	4.2:+42636699	None:intergenic
AAAGGGTGAACTTGGCAGAA+TGG	0.494311	4.2:-42635084	MS.gene67393:CDS
AAAGTACCATAGACACTAGG+TGG	0.659812	4.2:+42636396	None:intergenic
AAATCGGACGTGTATTCATT+TGG	0.334002	4.2:-42635166	MS.gene67393:CDS
AACAACGGGATTCAAAGACA+TGG	0.600624	4.2:-42635858	MS.gene67393:CDS
AACCCTGTGTACTCTCTTCG+CGG	0.478213	4.2:+42636609	None:intergenic
AACTAAAGTTGCTTGTAAGA+GGG	0.551361	4.2:-42635641	MS.gene67393:CDS
AAGAAAGTTGGTGTGATAGT+GGG	0.631245	4.2:-42635964	MS.gene67393:CDS
AAGACAGTTGGCACAACAAC+GGG	0.421287	4.2:-42635872	MS.gene67393:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAAAGTTGCTTGTAAGA+GGG	-	chr4.2:42635818-42635837	MS.gene67393:CDS	30.0%
AGAAACTGCTGAAAAATGTT+TGG	-	chr4.2:42636490-42636509	MS.gene67393:CDS	30.0%
AGTCCATTCAAAATTGCATT+AGG	+	chr4.2:42635390-42635409	None:intergenic	30.0%
AGTTTCTGCAAACTTTCTTA+GGG	+	chr4.2:42636477-42636496	None:intergenic	30.0%
CGACATCTAGTATCATTAAT+TGG	-	chr4.2:42635912-42635931	MS.gene67393:CDS	30.0%
CTTCAAGAGGTTATTGTTAA+AGG	-	chr4.2:42636578-42636597	MS.gene67393:CDS	30.0%
GAAAAATTAGTAGCAAGGTT+AGG	+	chr4.2:42634991-42635010	None:intergenic	30.0%
GTCACATTAAAATTACTACG+CGG	+	chr4.2:42635114-42635133	None:intergenic	30.0%
GTCCATTCAAAATTGCATTA+GGG	+	chr4.2:42635389-42635408	None:intergenic	30.0%
TAATTGGATATTGTGACGAA+AGG	-	chr4.2:42635928-42635947	MS.gene67393:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	42634706	42636775	42634706	ID=MS.gene67393
chr4.2	mRNA	42634706	42636775	42634706	ID=MS.gene67393.t1;Parent=MS.gene67393
chr4.2	exon	42634706	42636775	42634706	ID=MS.gene67393.t1.exon1;Parent=MS.gene67393.t1
chr4.2	CDS	42634706	42636775	42634706	ID=cds.MS.gene67393.t1;Parent=MS.gene67393.t1

Gene Sequence

>MS.gene67393

ATGAAGGAGTACTTGGTAAATGTGACCTTAGACACACTTGTCATCACCTTTACTCCGTCGAACAATTCCACTGCTTTTGTGAATGCTATTGAAGTTGTTTCTGTGCCTGATGACCTAATTGCCGATGATGCTATCGCCTTGAATCCGCGAAGAGAGTACACAGGGTTGTTGACAGATGCATTTGAGACGGTTTTTAGGCTTAACATGGGAGGTCCAAGTGTTTCCTCTAGTGTTGACCCGCTTCATCGAACTTGGGTTCCAGATACAAGCTTCCTGATACAACCTAACCTTGCTACTAATTTTTCAAGTATACGTGCTGTTAAATATGCAAAAGGGGGTGCAACAGAAAATATTGCTCCACCTAGTGTCTATGGTACTTTAACTGAGATGAACTCGGATAGTGATCCGCGTAGTAATTTTAATGTGACATGGAAGTTTGATGTCGAACCAGGATTTCAATACCTTGTTCGACTTCATTTCTGTGACATTGTCAGTAAAGGTCTTAATGAACTTTATTTCAATGTTTACATTACTTCCTTGTTGGCTTCCAAGGATCTCGATCTCGGTGAAAAGACTCATAATACTTTGGCTACTCCGTATTTTATGGATTTTGTTACAACACCGTCGGTTGACAATAAAATTCTTGTAAGTATTGGCCCTTCTGATGTAAATAATGATTACCCTAATGCAATTTTGAATGGACTTGAGATCATGAAAATGAACAACTCTATCAGAAGTCTCAGCGCATCTGCAGCCATGGCTTTGACGAGTAATCATGGTTCGAATTCTAAGAAAGTTGGTGTGATAGTGGGTGTTAGTCTTGGGATATTTTGTGCGCTGGTGGCCATGGTTGGAGGCTTCTTTGTACTCAGAAAGAGAAGAAGACAGTTGGCACAACAACGGGATTCAAAGACATGGGTTCCTTTATCGGATGGTACTTCTCACACAATGGGAAGTAAATATTCAAACGCCACAACAGCCAGTGCTGCTTCAAATTTCGGGTATCGCTTTCCTTTTGCAGTAGTTCAGGAGGCAACAAACAATTTTGATGAGAGTTGGGTTATTGGTGTAGGTGGTTTTGGTAAGGTATACAAAGGTGAATTAAGCGATGGAACTAAAGTTGCTTGTAAGAGGGGGAACCCTCGGTCGCATCAGGGACTTGCAGAGTTCCGAACTGAAATTGAAATGTTGTCTCAGTTCCGTCATCGACATCTAGTATCATTAATTGGATATTGTGACGAAAGGAATGAAATGATCTTGATATATGAATACATGGAGAACGGAACTGTCAAGAGTCATCTGTATGGTTCAGGTCTCCCTAGCTTAAGTTGGAAGGAACGACTTGAGATATGCATTGGAGCAGCTAGGGGACTCCATTACCTTCATACCGGCTATGCTAAAGCAGTTATTCATCGTGATGTAAAGTCTGCAAATATCCTACTTGATGAGAACCTCATGGCAAAAGTAGCCGATTTCGGGCTATCAAAGACCGGACCGGAGATTGATCAGACACATGTGAGCACAGCTGTCAAAGGGAGTTTTGGCTACCTTGATCCGGAATATTTCAGAAGGCAACAATTAACAGAAAAATCGGACGTGTATTCATTTGGGGTAGTTCTGCTTGAGGTTCTGTGTGCAAGACCTGTTATAGATCCATCCCTTCCACGAGAAAGGGTGAACTTGGCAGAATGGGCGATGAAATGGCAGAAAAAAGGGGAACTTGCACGAATCGTGGATCCAACACTTGCTGGGAAAATAAGACCAGATTCCCTAAGAAAGTTTGCAGAAACTGCTGAAAAATGTTTGGCTGATTTTGGTGTTGATAGACCTTCCATGGGCGATGTATTGTGGAATTTGGAGTATGCTCTTCAACTTCAAGAGGTTATTGTTAAAGGAGATCCTGAAGAAAACAGTACTAATATGATCGGCGACCTCTGTCCGCAAATCAACAATTTCGAGCAGGAACCGAGTGTTTCTGTTGAGCAATCTGAAGCTTCCAGTTTAGATGATCTTTCAGGCGTTTCTATGAGTAAAGTATTCTCACAGCTGGTGAAGTCTGAGGGAAGGTGA

Protein sequence

>MS.gene67393.t1

MKEYLVNVTLDTLVITFTPSNNSTAFVNAIEVVSVPDDLIADDAIALNPRREYTGLLTDAFETVFRLNMGGPSVSSSVDPLHRTWVPDTSFLIQPNLATNFSSIRAVKYAKGGATENIAPPSVYGTLTEMNSDSDPRSNFNVTWKFDVEPGFQYLVRLHFCDIVSKGLNELYFNVYITSLLASKDLDLGEKTHNTLATPYFMDFVTTPSVDNKILVSIGPSDVNNDYPNAILNGLEIMKMNNSIRSLSASAAMALTSNHGSNSKKVGVIVGVSLGIFCALVAMVGGFFVLRKRRRQLAQQRDSKTWVPLSDGTSHTMGSKYSNATTASAASNFGYRFPFAVVQEATNNFDESWVIGVGGFGKVYKGELSDGTKVACKRGNPRSHQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMENGTVKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEVLCARPVIDPSLPRERVNLAEWAMKWQKKGELARIVDPTLAGKIRPDSLRKFAETAEKCLADFGVDRPSMGDVLWNLEYALQLQEVIVKGDPEENSTNMIGDLCPQINNFEQEPSVSVEQSEASSLDDLSGVSMSKVFSQLVKSEGR