AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67397.t1 MTR_6g034945 98.387 310 5 0 1 310 1 310 0.0 623
MS.gene67397.t1 MTR_5g075390 50.781 256 86 9 26 274 49 271 8.96e-61 197
MS.gene67397.t1 MTR_3g467120 44.710 293 106 14 26 281 36 309 3.33e-52 176
MS.gene67397.t1 MTR_4g072090 57.714 175 66 3 76 243 279 452 2.50e-49 171
MS.gene67397.t1 MTR_3g094020 49.541 218 84 6 28 243 7 200 4.86e-49 166
MS.gene67397.t1 MTR_2g099050 57.143 168 57 4 107 260 168 334 5.31e-47 164
MS.gene67397.t1 MTR_4g072090 56.442 163 63 3 76 231 279 440 1.92e-43 154
MS.gene67397.t1 MTR_1g023690 46.818 220 98 7 74 281 303 515 7.19e-33 127
MS.gene67397.t1 MTR_4g079500 43.966 116 58 1 149 257 192 307 2.34e-19 87.0
MS.gene67397.t1 MTR_2g090900 47.000 100 53 0 149 248 189 288 7.41e-19 85.9
MS.gene67397.t1 MTR_2g090900 47.000 100 53 0 149 248 189 288 1.08e-18 85.5
MS.gene67397.t1 MTR_1g099030 34.361 227 132 6 31 252 11 225 1.58e-18 84.3
MS.gene67397.t1 MTR_8g088650 30.153 262 141 11 11 244 75 322 1.38e-13 70.9
MS.gene67397.t1 MTR_0405s0060 47.619 84 37 2 100 182 78 155 3.64e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67397.t1 AT1G43700 45.260 327 121 12 13 287 12 332 1.60e-66 212
MS.gene67397.t1 AT2G31370 64.828 145 41 2 109 244 151 294 3.94e-50 171
MS.gene67397.t1 AT2G31370 59.880 167 56 3 109 265 151 316 1.05e-49 170
MS.gene67397.t1 AT2G31370 59.880 167 56 3 109 265 151 316 1.05e-49 170
MS.gene67397.t1 AT2G31370 59.880 167 56 3 109 265 151 316 1.05e-49 170
MS.gene67397.t1 AT2G31370 59.880 167 56 3 109 265 151 316 1.05e-49 170
MS.gene67397.t1 AT2G31370 59.880 167 56 3 109 265 151 316 1.05e-49 170
MS.gene67397.t1 AT2G31370 59.880 167 56 3 109 265 151 316 1.05e-49 170
MS.gene67397.t1 AT4G38900 55.497 191 62 5 73 243 299 486 3.85e-49 172
MS.gene67397.t1 AT4G38900 55.497 191 62 5 73 243 299 486 3.85e-49 172
MS.gene67397.t1 AT2G40620 46.000 250 110 8 2 243 8 240 4.24e-49 167
MS.gene67397.t1 AT4G38900 53.807 197 62 6 73 243 299 492 1.18e-46 165
MS.gene67397.t1 AT1G06070 54.598 174 63 3 109 273 159 325 1.12e-45 160
MS.gene67397.t1 AT1G06850 62.791 129 47 1 123 251 121 248 2.29e-45 157
MS.gene67397.t1 AT2G21230 54.444 180 66 3 76 243 287 462 1.29e-44 159
MS.gene67397.t1 AT2G21230 54.444 180 66 3 76 243 287 462 1.29e-44 159
MS.gene67397.t1 AT2G21230 52.688 186 66 4 76 243 287 468 2.40e-42 153
MS.gene67397.t1 AT2G21230 53.846 169 62 3 76 232 287 451 3.61e-40 146
MS.gene67397.t1 AT1G06850 72.152 79 21 1 123 201 121 198 8.12e-28 108
MS.gene67397.t1 AT2G13150 35.503 169 93 4 83 244 83 242 6.43e-19 85.1
MS.gene67397.t1 AT2G42380 41.880 117 57 1 149 254 184 300 7.66e-19 85.9
MS.gene67397.t1 AT3G58120 47.368 95 50 0 149 243 200 294 1.26e-18 85.1
MS.gene67397.t1 AT2G12940 32.597 181 108 5 83 260 82 251 1.65e-17 81.6
MS.gene67397.t1 AT2G12900 38.235 102 62 1 143 244 109 209 2.90e-16 77.4
MS.gene67397.t1 AT2G42380 45.238 84 46 0 149 232 184 267 5.29e-15 73.9
MS.gene67397.t1 AT3G58120 45.679 81 44 0 149 229 200 280 5.43e-14 71.2
MS.gene67397.t1 AT1G58110 28.571 252 135 7 22 244 87 322 4.93e-13 69.3
MS.gene67397.t1 AT1G58110 28.571 252 135 7 22 244 87 322 4.93e-13 69.3
MS.gene67397.t1 AT2G42380 37.607 117 51 2 149 254 184 289 1.24e-12 67.8
MS.gene67397.t1 AT2G21235 38.235 102 62 1 151 252 359 459 2.24e-12 67.8
MS.gene67397.t1 AT2G42380 64.444 45 16 0 149 193 184 228 1.77e-11 63.5
MS.gene67397.t1 AT2G42380 64.444 45 16 0 149 193 184 228 1.77e-11 63.5

Find 94 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCAGGTTGTGTCTGC+TGG 0.238257 6.1:+15472195 None:intergenic
CTGAGTGGGAACGGCGGTGG+TGG 0.309521 6.1:+15476991 None:intergenic
TTTACAGGATTCTTGCTAAT+AGG 0.313599 6.1:-15475071 MS.gene67397:intron
TTGATCCTAAGAGAGCTAAA+AGG 0.339939 6.1:-15476620 MS.gene67397:intron
TGATTTGACTGCTCAGAATA+AGG 0.343859 6.1:-15472923 MS.gene67397:CDS
CGTCAGAGGGACGGCATCTC+AGG 0.344618 6.1:-15476833 MS.gene67397:CDS
GGGTTAGGGTTTGGTGGTGA+AGG 0.352329 6.1:-15476780 MS.gene67397:CDS
GAGTCCATCGGGACAGCGTC+AGG 0.359931 6.1:+15476879 None:intergenic
CCCGTTAAATGAAGGATTAC+CGG 0.363659 6.1:+15472274 None:intergenic
GCCGGTAATCCTTCATTTAA+CGG 0.378261 6.1:-15472275 MS.gene67397:CDS
TTTGATGGGTTAGGGTTTGG+TGG 0.386396 6.1:-15476786 MS.gene67397:CDS
TGTTGTATACGAGCTACTTT+TGG 0.392286 6.1:+15472108 None:intergenic
TGCACAACTTACAGTCCTTC+AGG 0.397567 6.1:-15474953 MS.gene67397:intron
AATCATTTGACTGCCGTTGC+CGG 0.397822 6.1:-15472293 MS.gene67397:CDS
AGAAAGAACTTCAACGCCTT+AGG 0.400050 6.1:-15472325 MS.gene67397:CDS
CCGGTAATCCTTCATTTAAC+GGG 0.400994 6.1:-15472274 MS.gene67397:CDS
TCGTGGTCGCTCTAACTTCA+TGG 0.412681 6.1:-15472141 MS.gene67397:CDS
ACAGCGTCAGGGGACGGGAG+AGG 0.412739 6.1:+15476891 None:intergenic
GTTTGGTGGTGAAGGGGAAA+AGG 0.416147 6.1:-15476772 MS.gene67397:CDS
GTTAGGGTTTGGTGGTGAAG+GGG 0.427763 6.1:-15476778 MS.gene67397:CDS
CAGCGTCAGGGGACGGGAGA+GGG 0.430362 6.1:+15476892 None:intergenic
TGAGTGGGAACGGCGGTGGT+GGG 0.433218 6.1:+15476992 None:intergenic
CATGCCAGGTTGTGTCTGCT+GGG 0.434483 6.1:+15472196 None:intergenic
TCCATGGATGGGTCTGAGAT+GGG 0.439417 6.1:-15476711 MS.gene67397:CDS
TTCCATGGATGGGTCTGAGA+TGG 0.446734 6.1:-15476712 MS.gene67397:CDS
TCGGGACAGCGTCAGGGGAC+GGG 0.447553 6.1:+15476886 None:intergenic
GGTTGTGTCTGCTGGGGTTG+AGG 0.447864 6.1:+15472203 None:intergenic
GAGATGGGGTTGTTTGAAGT+TGG 0.453490 6.1:-15476696 MS.gene67397:CDS
GGTTAGGGTTTGGTGGTGAA+GGG 0.457604 6.1:-15476779 MS.gene67397:CDS
AGGGGACGGGAGAGGGAGGT+TGG 0.458623 6.1:+15476899 None:intergenic
GAACGAGAAGGCGGCATGCC+AGG 0.461441 6.1:+15472182 None:intergenic
GAAAGAACTTCAACGCCTTA+GGG 0.472203 6.1:-15472324 MS.gene67397:CDS
ATCGGGACAGCGTCAGGGGA+CGG 0.485265 6.1:+15476885 None:intergenic
AGACACCACCTTCCGTTTCG+CGG 0.485465 6.1:-15476970 MS.gene67397:CDS
GGAAAAGGTTGAAGAGAGGA+AGG 0.492873 6.1:-15476757 MS.gene67397:CDS
AAGTCAATTATAACTGGTGG+TGG 0.495733 6.1:+15477041 None:intergenic
GTCCCCTGACGCTGTCCCGA+TGG 0.496675 6.1:-15476883 MS.gene67397:CDS
AGAGGAAGGTGAGTAGACAT+AGG 0.498750 6.1:-15476743 MS.gene67397:CDS
ATCGAAGTCGGACGGGTCGA+AGG 0.500424 6.1:+15476926 None:intergenic
GAGAACATCCCGTTAAATGA+AGG 0.504928 6.1:+15472266 None:intergenic
CGGTGGTGGGTCCCACGTGA+TGG 0.512907 6.1:+15477005 None:intergenic
AGAGCGACCACGACCGTTGA+AGG 0.516566 6.1:+15472151 None:intergenic
GATCAACCCTTCAACGGTCG+TGG 0.516911 6.1:-15472158 MS.gene67397:CDS
CAACCCCAGCAGACACAACC+TGG 0.516981 6.1:-15472200 MS.gene67397:CDS
CGTCGAAGTTTGCCGCGAAA+CGG 0.519451 6.1:+15476958 None:intergenic
AACTCGATATACAAGTGAGC+TGG 0.519563 6.1:-15475019 MS.gene67397:CDS
TGTCTGAGTGGGAACGGCGG+TGG 0.521835 6.1:+15476988 None:intergenic
AGGATTACTCATTTGTTGCA+TGG 0.522341 6.1:+15472223 None:intergenic
GGGTTGTTTGAAGTTGGTGA+TGG 0.524705 6.1:-15476690 MS.gene67397:CDS
TGGACTCATCAGAGTCCATC+GGG 0.530528 6.1:+15476868 None:intergenic
AGGTGGTGTCTGAGTGGGAA+CGG 0.531088 6.1:+15476982 None:intergenic
CATCGGGAAGTCAGCGTCAG+AGG 0.531841 6.1:-15476847 MS.gene67397:CDS
AAGGGGAAAAGGTTGAAGAG+AGG 0.535836 6.1:-15476761 MS.gene67397:CDS
AGTTCAGCAAGTTTCTCAGC+CGG 0.541555 6.1:+15476651 None:intergenic
AGGTATAGTAGTTCCATGGA+TGG 0.543947 6.1:-15476723 MS.gene67397:CDS
TGGACTCTGATGAGTCCATC+GGG 0.544487 6.1:-15476863 MS.gene67397:CDS
TGGTGGGTCCCACGTGATGG+TGG 0.546686 6.1:+15477008 None:intergenic
TGGAGATATCGAAGTCGGAC+GGG 0.546734 6.1:+15476919 None:intergenic
CGTCAGGGGACGGGAGAGGG+AGG 0.547402 6.1:+15476895 None:intergenic
AAGCTTTGCTTGTTGCTCGA+AGG 0.549248 6.1:+15472879 None:intergenic
CCCCATCTCAGACCCATCCA+TGG 0.549369 6.1:+15476710 None:intergenic
CGTTCTGATCAACCCTTCAA+CGG 0.556715 6.1:-15472164 MS.gene67397:CDS
GTCCATCGGGACAGCGTCAG+GGG 0.557593 6.1:+15476881 None:intergenic
TCTAAGTCAATTATAACTGG+TGG 0.559887 6.1:+15477038 None:intergenic
AGTCCATCGGGACAGCGTCA+GGG 0.559909 6.1:+15476880 None:intergenic
ATCGGGAAGTCAGCGTCAGA+GGG 0.565138 6.1:-15476846 MS.gene67397:CDS
GGAAGTCAGCGTCAGAGGGA+CGG 0.567008 6.1:-15476842 MS.gene67397:CDS
CCATGGATGGGTCTGAGATG+GGG 0.569336 6.1:-15476710 MS.gene67397:CDS
GAGCGACCACGACCGTTGAA+GGG 0.569915 6.1:+15472152 None:intergenic
ACATAGGTATAGTAGTTCCA+TGG 0.575020 6.1:-15476727 MS.gene67397:CDS
ATGGACTCTGATGAGTCCAT+CGG 0.585619 6.1:-15476864 MS.gene67397:CDS
CTCTGACGCTGACTTCCCGA+TGG 0.585973 6.1:+15476848 None:intergenic
ACGGAAGGTGGTGTCTGAGT+GGG 0.588249 6.1:+15476977 None:intergenic
GCATCTCAGGAGTTTGTCTG+TGG 0.588489 6.1:-15476820 MS.gene67397:CDS
ATGGACTCATCAGAGTCCAT+CGG 0.588783 6.1:+15476867 None:intergenic
GAAGTTTGCCGCGAAACGGA+AGG 0.589986 6.1:+15476962 None:intergenic
CTGCTGCACGATCGAAAGAG+AGG 0.598234 6.1:-15475044 MS.gene67397:CDS
GATATACAAGTGAGCTGGAG+AGG 0.598508 6.1:-15475014 MS.gene67397:CDS
CAACAAGCAAAGCTTAGAGA+AGG 0.603588 6.1:-15472871 MS.gene67397:intron
TTGGAGATATCGAAGTCGGA+CGG 0.611978 6.1:+15476918 None:intergenic
GGTATAGTAGTTCCATGGAT+GGG 0.613894 6.1:-15476722 MS.gene67397:CDS
AAATGAAGGATTACCGGCAA+CGG 0.623798 6.1:+15472280 None:intergenic
AACGGAAGGTGGTGTCTGAG+TGG 0.626499 6.1:+15476976 None:intergenic
GAAAACATGCCACCATCACG+TGG 0.629605 6.1:-15477017 MS.gene67397:CDS
TGGTGTCTGAGTGGGAACGG+CGG 0.631875 6.1:+15476985 None:intergenic
GAGGTTGGAGATATCGAAGT+CGG 0.632312 6.1:+15476914 None:intergenic
TGGTGTGAAGAAATCTATGC+CGG 0.640871 6.1:-15476670 MS.gene67397:CDS
AAGGGTTGATCAGAACGAGA+AGG 0.660536 6.1:+15472170 None:intergenic
GGTTGATCAGAACGAGAAGG+CGG 0.661757 6.1:+15472173 None:intergenic
ATGCCAGGTTGTGTCTGCTG+GGG 0.664418 6.1:+15472197 None:intergenic
GTTTGCCGCGAAACGGAAGG+TGG 0.671587 6.1:+15476965 None:intergenic
ATTCTGAGCAGTCAAATCAG+TGG 0.697438 6.1:+15472927 None:intergenic
GGACTGTAAGTTGTGCAGAG+AGG 0.716589 6.1:+15474959 None:intergenic
AAAACATGCCACCATCACGT+GGG 0.739972 6.1:-15477016 MS.gene67397:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAAAAAAAAAGATAAA+AGG - chr6.1:15474044-15474063 MS.gene67397:intron 10.0%
!! ATGAAAAAAAAAAGATAAAA+GGG - chr6.1:15474045-15474064 MS.gene67397:intron 10.0%
!! TTATTTATGTACTAAATTTA+AGG - chr6.1:15472668-15472687 MS.gene67397:intron 10.0%
!! AAAAAACATCTTAAAACAAA+GGG + chr6.1:15473741-15473760 None:intergenic 15.0%
!! ATACATACAAATATATAGTT+TGG - chr6.1:15474530-15474549 MS.gene67397:intron 15.0%
!! TATATATAATTTACGGTATT+AGG + chr6.1:15473358-15473377 None:intergenic 15.0%
!! TTTGAAAAAGACATATAAAT+AGG + chr6.1:15475536-15475555 None:intergenic 15.0%
!!! ACAAAATTTAGTAATTTTCT+TGG - chr6.1:15475688-15475707 MS.gene67397:intron 15.0%
!!! CATAAATTTGATTTTATTTC+TGG + chr6.1:15475321-15475340 None:intergenic 15.0%
!!! TTATTTTGTAATGGATAATT+TGG - chr6.1:15473687-15473706 MS.gene67397:intron 15.0%
!! AAATGTGCAAAAGAATAAAA+CGG - chr6.1:15476202-15476221 MS.gene67397:intron 20.0%
!! AAATTGTATGTGTTTATGAT+CGG - chr6.1:15472998-15473017 MS.gene67397:intron 20.0%
!! AACAAGATGATAAATAGTTT+AGG - chr6.1:15475637-15475656 MS.gene67397:intron 20.0%
!! AAGATACTGTGATTAATTTA+TGG + chr6.1:15475409-15475428 None:intergenic 20.0%
!! ATATAAGTTTAATGAGTATG+TGG - chr6.1:15472747-15472766 MS.gene67397:intron 20.0%
!! ATTACATAGAAGTAACTAAA+TGG + chr6.1:15475781-15475800 None:intergenic 20.0%
!! ATTCAATAAAGATGTGATAA+AGG + chr6.1:15476395-15476414 None:intergenic 20.0%
!! GAAAAAACATCTTAAAACAA+AGG + chr6.1:15473742-15473761 None:intergenic 20.0%
!! GACTAAAATTCTATATATGT+TGG + chr6.1:15473869-15473888 None:intergenic 20.0%
!! GTCAACGTATATATAATTTA+CGG + chr6.1:15473365-15473384 None:intergenic 20.0%
!! TAAATAGTTTAGGCTATTAT+AGG - chr6.1:15475647-15475666 MS.gene67397:intron 20.0%
!! TTACCATTTAAATATGAACA+TGG - chr6.1:15476804-15476823 MS.gene67397:CDS 20.0%
!! TTATCACATCTTTATTGAAT+TGG - chr6.1:15476395-15476414 MS.gene67397:intron 20.0%
!! TTCAATAAAGATGTGATAAA+GGG + chr6.1:15476394-15476413 None:intergenic 20.0%
!!! AAAAAAAAACCTTTTTATCC+TGG + chr6.1:15475006-15475025 None:intergenic 20.0%
!!! ATGTGTCTTTTATTTTGTAA+TGG - chr6.1:15473678-15473697 MS.gene67397:intron 20.0%
!!! CACTTTTTATAATCACTTTT+TGG - chr6.1:15472621-15472640 MS.gene67397:intron 20.0%
!!! CTTTTTATATGCTAATTTTG+TGG - chr6.1:15475426-15475445 MS.gene67397:intron 20.0%
!!! TTTTCTAAGTCAATTATAAC+TGG + chr6.1:15472157-15472176 None:intergenic 20.0%
! AAAAATATCTGTCTTAAGGA+TGG + chr6.1:15475957-15475976 None:intergenic 25.0%
! AATGTTGTATGTTTGTTTAC+AGG - chr6.1:15474103-15474122 MS.gene67397:intron 25.0%
! ACTCAAAAATATCTGTCTTA+AGG + chr6.1:15475961-15475980 None:intergenic 25.0%
! ATCAAATTCACAAACACAAT+TGG + chr6.1:15473631-15473650 None:intergenic 25.0%
! ATCTACATCATTGTTAAAGA+TGG + chr6.1:15474363-15474382 None:intergenic 25.0%
! ATGCAATCATAATCAAAATG+AGG + chr6.1:15474815-15474834 None:intergenic 25.0%
! CATCTAAAAATCACATGAAA+AGG + chr6.1:15476062-15476081 None:intergenic 25.0%
! GTTAAGAAACATTGAGTTTA+GGG - chr6.1:15472888-15472907 MS.gene67397:CDS 25.0%
! GTTACTTCTATGTAATACAA+TGG - chr6.1:15475785-15475804 MS.gene67397:intron 25.0%
! TAGCCATGTTCATATTTAAA+TGG + chr6.1:15476810-15476829 None:intergenic 25.0%
! TCAATAAAGATGTGATAAAG+GGG + chr6.1:15476393-15476412 None:intergenic 25.0%
! TGTTAAATTGATTGTGTTTG+TGG - chr6.1:15473783-15473802 MS.gene67397:intron 25.0%
! TGTTTGGATTATGTAGAATT+TGG - chr6.1:15474068-15474087 MS.gene67397:intron 25.0%
! TTAATAAACCATCGTAAGTA+GGG + chr6.1:15473512-15473531 None:intergenic 25.0%
! TTCAAGCAATGATATTTCTT+TGG + chr6.1:15476743-15476762 None:intergenic 25.0%
! TTTAATAAACCATCGTAAGT+AGG + chr6.1:15473513-15473532 None:intergenic 25.0%
! TTTCTTGATCCATAAAAAAG+TGG - chr6.1:15476357-15476376 MS.gene67397:intron 25.0%
!! ACTTCTCTTAAAGTTTTTCT+AGG + chr6.1:15473115-15473134 None:intergenic 25.0%
!! ATCGGATATTTTCAAAACTA+AGG + chr6.1:15476582-15476601 None:intergenic 25.0%
!! CCATATCGTATAAGATTTTT+CGG - chr6.1:15475207-15475226 MS.gene67397:intron 25.0%
!! TATTGAATTGGACTAGAAAA+AGG - chr6.1:15476407-15476426 MS.gene67397:intron 25.0%
!! TCGGATATTTTCAAAACTAA+GGG + chr6.1:15476581-15476600 None:intergenic 25.0%
!! TTTAGCATCATTTACGATTT+TGG - chr6.1:15476554-15476573 MS.gene67397:intron 25.0%
!! TTTTCAAAACGTAGAAAGTA+GGG + chr6.1:15474898-15474917 None:intergenic 25.0%
!!! AAAAAAGATAAAAGGGTGTT+TGG - chr6.1:15474052-15474071 MS.gene67397:intron 25.0%
!!! AAGCAAAATCCACTTTTTTA+TGG + chr6.1:15476369-15476388 None:intergenic 25.0%
!!! ACAGATATTTTTGAGTAAAG+TGG - chr6.1:15475965-15475984 MS.gene67397:intron 25.0%
!!! ATCTTTTAGTTAGGAAAACA+TGG + chr6.1:15475117-15475136 None:intergenic 25.0%
!!! CTTTTCATGTGATTTTTAGA+TGG - chr6.1:15476060-15476079 MS.gene67397:intron 25.0%
!!! GTTGCTTTTGTGATATAAAT+CGG - chr6.1:15476687-15476706 MS.gene67397:CDS 25.0%
!!! TTGTAGCACAGTTTTAAAAA+AGG + chr6.1:15476502-15476521 None:intergenic 25.0%
AAAGGAAATAACATACCTGA+AGG + chr6.1:15474254-15474273 None:intergenic 30.0%
AATCTTATACGATATGGTGA+AGG + chr6.1:15475204-15475223 None:intergenic 30.0%
ACATCATTGTTAAAGATGGA+GGG + chr6.1:15474359-15474378 None:intergenic 30.0%
ACCAGAAATTCCATATGTAT+AGG + chr6.1:15473596-15473615 None:intergenic 30.0%
AGAGAGAAGATTATGTAGTT+AGG - chr6.1:15473041-15473060 MS.gene67397:intron 30.0%
ATAGCTAAGTCAAGGAAAAT+AGG + chr6.1:15475051-15475070 None:intergenic 30.0%
ATCCCTAAATACGTTAGATA+GGG + chr6.1:15476609-15476628 None:intergenic 30.0%
ATGATTGTATAGCTAAGTCA+AGG + chr6.1:15475059-15475078 None:intergenic 30.0%
ATTCTATATATGTTGGTCCT+AGG + chr6.1:15473862-15473881 None:intergenic 30.0%
CAATAAAGATGTGATAAAGG+GGG + chr6.1:15476392-15476411 None:intergenic 30.0%
CAATCATGCTTACGAAAAAT+CGG - chr6.1:15475072-15475091 MS.gene67397:intron 30.0%
CCGAAAAATCTTATACGATA+TGG + chr6.1:15475210-15475229 None:intergenic 30.0%
CGATTCTAAGTTTAGAAGTT+TGG - chr6.1:15473555-15473574 MS.gene67397:intron 30.0%
CTTAAAACGACAACTACAAA+GGG - chr6.1:15475724-15475743 MS.gene67397:intron 30.0%
GGAAGTTAATCCTATACATA+TGG - chr6.1:15473583-15473602 MS.gene67397:intron 30.0%
GGTAGGTATTTATGGTTATA+TGG - chr6.1:15474477-15474496 MS.gene67397:intron 30.0%
GGTTAAGAAACATTGAGTTT+AGG - chr6.1:15472887-15472906 MS.gene67397:CDS 30.0%
GGTTGTAACGCAAAATATAT+AGG + chr6.1:15474585-15474604 None:intergenic 30.0%
TAAAACTGTGCTACAAAAGT+TGG - chr6.1:15476506-15476525 MS.gene67397:intron 30.0%
TAAATAAACCATCGCGAATA+GGG + chr6.1:15472975-15472994 None:intergenic 30.0%
TAAGTCAAGGAAAATAGGAT+TGG + chr6.1:15475046-15475065 None:intergenic 30.0%
TACATCATTGTTAAAGATGG+AGG + chr6.1:15474360-15474379 None:intergenic 30.0%
TACGTTAGATAGGGAAAAAT+CGG + chr6.1:15476600-15476619 None:intergenic 30.0%
TATGTAACAACTAACTGTAG+TGG - chr6.1:15475337-15475356 MS.gene67397:intron 30.0%
TATTTCAGATGGTTAATCCT+AGG - chr6.1:15473842-15473861 MS.gene67397:intron 30.0%
TCCTATACATATGGAATTTC+TGG - chr6.1:15473592-15473611 MS.gene67397:intron 30.0%
TCTAAGTCAATTATAACTGG+TGG + chr6.1:15472154-15472173 None:intergenic 30.0%
TCTAAGTGTTCTATGAAATG+AGG - chr6.1:15474711-15474730 MS.gene67397:intron 30.0%
TGTCAAATTACTACAAGTAG+AGG - chr6.1:15473085-15473104 MS.gene67397:intron 30.0%
TGTTTGTAACATGTTCTTGT+TGG - chr6.1:15474321-15474340 MS.gene67397:intron 30.0%
TTAAAACGACAACTACAAAG+GGG - chr6.1:15475725-15475744 MS.gene67397:intron 30.0%
TTAAATAAACCATCGCGAAT+AGG + chr6.1:15472976-15472995 None:intergenic 30.0%
TTAACCATGACTCACAAATT+AGG + chr6.1:15473387-15473406 None:intergenic 30.0%
TTCAGAACAGTGAAATGAAA+AGG + chr6.1:15474272-15474291 None:intergenic 30.0%
TTCCCTATCTAACGTATTTA+GGG - chr6.1:15476604-15476623 MS.gene67397:intron 30.0%
TTCTACTAAAGTGACGTAAA+AGG + chr6.1:15475500-15475519 None:intergenic 30.0%
TTTACAGGATTCTTGCTAAT+AGG - chr6.1:15474118-15474137 MS.gene67397:intron 30.0%
TTTCCCTATCTAACGTATTT+AGG - chr6.1:15476603-15476622 MS.gene67397:intron 30.0%
! AAGATTAGGGGTTTGAATTT+TGG - chr6.1:15473814-15473833 MS.gene67397:intron 30.0%
! AAGTTTAGAAGTTTGGAATC+TGG - chr6.1:15473562-15473581 MS.gene67397:intron 30.0%
! ACCATCTACGTAAAATTTTG+TGG + chr6.1:15474977-15474996 None:intergenic 30.0%
! CTTTTCAAAACGTAGAAAGT+AGG + chr6.1:15474899-15474918 None:intergenic 30.0%
! GGATTAACCATCTGAAATAT+AGG + chr6.1:15473841-15473860 None:intergenic 30.0%
! TCCACAAAATTTTACGTAGA+TGG - chr6.1:15474973-15474992 MS.gene67397:CDS 30.0%
! TTTTGGACCTATATTTCAGA+TGG - chr6.1:15473831-15473850 MS.gene67397:intron 30.0%
!! AGCAAAAGTGTTTGCAAAAA+TGG + chr6.1:15476772-15476791 None:intergenic 30.0%
!! AGTTGGCTTAAATACAGTTT+TGG - chr6.1:15476523-15476542 MS.gene67397:intron 30.0%
!! CATGTGATTTTTAGATGGAT+AGG - chr6.1:15476065-15476084 MS.gene67397:intron 30.0%
!! TGTGGTTGATTCTAAGATTA+GGG - chr6.1:15473801-15473820 MS.gene67397:intron 30.0%
!! TTAAGCAGTTTCAGGTTAAA+TGG + chr6.1:15474774-15474793 None:intergenic 30.0%
!! TTGTGGTTGATTCTAAGATT+AGG - chr6.1:15473800-15473819 MS.gene67397:intron 30.0%
!!! ATAAACCTTTTAGCTCTCTT+AGG + chr6.1:15472577-15472596 None:intergenic 30.0%
!!! TGGATTCAGAGTTTTTTGAT+GGG - chr6.1:15472389-15472408 MS.gene67397:intron 30.0%
AAGAAACATTGAGTTTAGGG+TGG - chr6.1:15472891-15472910 MS.gene67397:CDS 35.0%
AAGTCAATTATAACTGGTGG+TGG + chr6.1:15472151-15472170 None:intergenic 35.0%
ACATAGGTATAGTAGTTCCA+TGG - chr6.1:15472462-15472481 MS.gene67397:intron 35.0%
AGGTACTAGGTAGGTATTTA+TGG - chr6.1:15474469-15474488 MS.gene67397:intron 35.0%
AGTCTCGTACTAAAGTTTCT+TGG - chr6.1:15473455-15473474 MS.gene67397:intron 35.0%
AGTCTCTAACTGAAGTTTGT+CGG - chr6.1:15473318-15473337 MS.gene67397:intron 35.0%
AGTTAGGAGAGTAAATCAGA+TGG - chr6.1:15473057-15473076 MS.gene67397:intron 35.0%
ATCTGTAATCCAACAAACCA+AGG + chr6.1:15476022-15476041 None:intergenic 35.0%
ATGCATGTATGCATGTGTAT+AGG - chr6.1:15474449-15474468 MS.gene67397:intron 35.0%
CATCCCTAAATACGTTAGAT+AGG + chr6.1:15476610-15476629 None:intergenic 35.0%
CCTACTTCAACGATGTAAAA+TGG + chr6.1:15475236-15475255 None:intergenic 35.0%
CCTTAAAACGACAACTACAA+AGG - chr6.1:15475723-15475742 MS.gene67397:intron 35.0%
CGTAAATGATGCTAAATAGC+AGG + chr6.1:15476550-15476569 None:intergenic 35.0%
CTAAACCACAAAACAGAAGA+CGG + chr6.1:15474841-15474860 None:intergenic 35.0%
GAGTAAAGTGGTAATTATCC+AGG - chr6.1:15475977-15475996 MS.gene67397:intron 35.0%
GCATATCCTTGGTATTATGT+GGG + chr6.1:15474433-15474452 None:intergenic 35.0%
GTCTCGTACTAAAGTTTCTT+GGG - chr6.1:15473456-15473475 MS.gene67397:intron 35.0%
GTTTCAGATTAAGCAGTTTC+AGG + chr6.1:15474782-15474801 None:intergenic 35.0%
TATGCATGTGTATAGGTACT+AGG - chr6.1:15474456-15474475 MS.gene67397:intron 35.0%
TCAAGGAAAATAGGATTGGA+TGG + chr6.1:15475042-15475061 None:intergenic 35.0%
TCACTAGTCAGAAAACTCAA+AGG + chr6.1:15475822-15475841 None:intergenic 35.0%
TCTGTAATCCAACAAACCAA+GGG + chr6.1:15476021-15476040 None:intergenic 35.0%
TGAAGGCTCGACTTATAATT+AGG + chr6.1:15475187-15475206 None:intergenic 35.0%
TGACTAGTGACTATGTTAGA+GGG - chr6.1:15475832-15475851 MS.gene67397:intron 35.0%
TGAGATTGTAGGATAAGACT+TGG - chr6.1:15472820-15472839 MS.gene67397:intron 35.0%
TGATTTGACTGCTCAGAATA+AGG - chr6.1:15476266-15476285 MS.gene67397:intron 35.0%
TGCATATCCTTGGTATTATG+TGG + chr6.1:15474434-15474453 None:intergenic 35.0%
TGGAAATACAAGCACGAAAT+TGG + chr6.1:15474957-15474976 None:intergenic 35.0%
TTGATCCTAAGAGAGCTAAA+AGG - chr6.1:15472569-15472588 MS.gene67397:intron 35.0%
TTGTAACATGTTCTTGTTGG+TGG - chr6.1:15474324-15474343 MS.gene67397:intron 35.0%
TTTACATCGTTGAAGTAGGT+TGG - chr6.1:15475237-15475256 MS.gene67397:intron 35.0%
! AATTTTACGTAGATGGTCCT+AGG - chr6.1:15474980-15474999 MS.gene67397:CDS 35.0%
! AGAAACATTGAGTTTAGGGT+GGG - chr6.1:15472892-15472911 MS.gene67397:CDS 35.0%
! AGATATTTGATGAGTTGGAG+TGG + chr6.1:15476100-15476119 None:intergenic 35.0%
! AGGATTACTCATTTGTTGCA+TGG + chr6.1:15476969-15476988 None:intergenic 35.0%
! ATGTGTTTATGATCGGCTTA+GGG - chr6.1:15473005-15473024 MS.gene67397:intron 35.0%
! ATTATCCGTCTTCTGTTTTG+TGG - chr6.1:15474833-15474852 MS.gene67397:intron 35.0%
! CCATTTTACATCGTTGAAGT+AGG - chr6.1:15475233-15475252 MS.gene67397:intron 35.0%
! GGTTTTCTTGTGAAGTTGTT+TGG + chr6.1:15472130-15472149 None:intergenic 35.0%
! GTGACTTAATTTGACTCAGT+TGG - chr6.1:15472866-15472885 MS.gene67397:intron 35.0%
! TATGTGTTTATGATCGGCTT+AGG - chr6.1:15473004-15473023 MS.gene67397:intron 35.0%
! TTAAGCAGTGTTGAGTTTGT+GGG - chr6.1:15473403-15473422 MS.gene67397:intron 35.0%
! TTGACCTAATTTGTGAGTCA+TGG - chr6.1:15473380-15473399 MS.gene67397:intron 35.0%
! TTTTCTGATCCATAATCCGA+TGG - chr6.1:15475264-15475283 MS.gene67397:intron 35.0%
!! ATGTTCTTGTTGGTGGTTTA+TGG - chr6.1:15474331-15474350 MS.gene67397:intron 35.0%
!! CTGCAGTACATCTTTTAGTT+AGG + chr6.1:15475126-15475145 None:intergenic 35.0%
!! GTGATTTTTAGATGGATAGG+TGG - chr6.1:15476068-15476087 MS.gene67397:intron 35.0%
!! GTGGTTGATTCTAAGATTAG+GGG - chr6.1:15473802-15473821 MS.gene67397:intron 35.0%
!!! CAGAGTTTTTTGATGGGTTA+GGG - chr6.1:15472395-15472414 MS.gene67397:intron 35.0%
!!! CCTTTGTAGTTGTCGTTTTA+AGG + chr6.1:15475726-15475745 None:intergenic 35.0%
!!! GTGGATTCAGAGTTTTTTGA+TGG - chr6.1:15472388-15472407 MS.gene67397:intron 35.0%
!!! TCAGAGTTTTTTGATGGGTT+AGG - chr6.1:15472394-15472413 MS.gene67397:intron 35.0%
!!! TTTTTTGATGGGTTAGGGTT+TGG - chr6.1:15472400-15472419 MS.gene67397:intron 35.0%
AAATGAAGGATTACCGGCAA+CGG + chr6.1:15476912-15476931 None:intergenic 40.0%
AACTCGATATACAAGTGAGC+TGG - chr6.1:15474170-15474189 MS.gene67397:intron 40.0%
AGAAAGAACTTCAACGCCTT+AGG - chr6.1:15476864-15476883 MS.gene67397:CDS 40.0%
AGGAGAGTAAATCAGATGGA+GGG - chr6.1:15473061-15473080 MS.gene67397:intron 40.0%
AGGGCTTTCTTCCATAATAC+TGG - chr6.1:15475851-15475870 MS.gene67397:intron 40.0%
AGGTATAGTAGTTCCATGGA+TGG - chr6.1:15472466-15472485 MS.gene67397:intron 40.0%
AGTGACGTAAAAGGATCAGA+TGG + chr6.1:15475491-15475510 None:intergenic 40.0%
ATGGAACCCACATAATACCA+AGG - chr6.1:15474424-15474443 MS.gene67397:intron 40.0%
ATGTAGTTTACCCCACTTAG+TGG - chr6.1:15473185-15473204 MS.gene67397:intron 40.0%
ATTCTGAGCAGTCAAATCAG+TGG + chr6.1:15476265-15476284 None:intergenic 40.0%
CAACAAGCAAAGCTTAGAGA+AGG - chr6.1:15476318-15476337 MS.gene67397:intron 40.0%
CATGCATACATGCATATCCT+TGG + chr6.1:15474444-15474463 None:intergenic 40.0%
CATGTGTATAGGTACTAGGT+AGG - chr6.1:15474460-15474479 MS.gene67397:intron 40.0%
CCCGTTAAATGAAGGATTAC+CGG + chr6.1:15476918-15476937 None:intergenic 40.0%
CCGGTAATCCTTCATTTAAC+GGG - chr6.1:15476915-15476934 MS.gene67397:CDS 40.0%
CTGACTAGTGACTATGTTAG+AGG - chr6.1:15475831-15475850 MS.gene67397:intron 40.0%
CTGTAATCCAACAAACCAAG+GGG + chr6.1:15476020-15476039 None:intergenic 40.0%
GAAAGAACTTCAACGCCTTA+GGG - chr6.1:15476865-15476884 MS.gene67397:CDS 40.0%
GAGAACATCCCGTTAAATGA+AGG + chr6.1:15476926-15476945 None:intergenic 40.0%
GCAATGTCGGAATATTCTCA+AGG - chr6.1:15475749-15475768 MS.gene67397:intron 40.0%
GCCGGTAATCCTTCATTTAA+CGG - chr6.1:15476914-15476933 MS.gene67397:CDS 40.0%
GGGCTTTCTTCCATAATACT+GGG - chr6.1:15475852-15475871 MS.gene67397:intron 40.0%
GGTATAGTAGTTCCATGGAT+GGG - chr6.1:15472467-15472486 MS.gene67397:intron 40.0%
GTCAAATACCCTACTTACGA+TGG - chr6.1:15473501-15473520 MS.gene67397:intron 40.0%
GTCTCTAACTGAAGTTTGTC+GGG - chr6.1:15473319-15473338 MS.gene67397:intron 40.0%
TAGGAGAGTAAATCAGATGG+AGG - chr6.1:15473060-15473079 MS.gene67397:intron 40.0%
TCCATAATACTGGGAGAGAT+TGG - chr6.1:15475861-15475880 MS.gene67397:intron 40.0%
TGGTGTGAAGAAATCTATGC+CGG - chr6.1:15472519-15472538 MS.gene67397:intron 40.0%
TGGTTCACAATCAGAATCAG+TGG + chr6.1:15474754-15474773 None:intergenic 40.0%
TGTAGTTTACCCCACTTAGT+GGG - chr6.1:15473186-15473205 MS.gene67397:intron 40.0%
TGTGCGGTCATAACTGTTTA+TGG - chr6.1:15474405-15474424 MS.gene67397:intron 40.0%
! AAACATTGAGTTTAGGGTGG+GGG - chr6.1:15472894-15472913 MS.gene67397:CDS 40.0%
! AAACCTTTTTATCCTGGCCT+AGG + chr6.1:15475000-15475019 None:intergenic 40.0%
! AATGATTCTTTTGCGCCCTA+AGG + chr6.1:15476883-15476902 None:intergenic 40.0%
! ATTTGATGAGTTGGAGTGGT+TGG + chr6.1:15476096-15476115 None:intergenic 40.0%
! GAAACATTGAGTTTAGGGTG+GGG - chr6.1:15472893-15472912 MS.gene67397:CDS 40.0%
! GTTAAGCAGTGTTGAGTTTG+TGG - chr6.1:15473402-15473421 MS.gene67397:intron 40.0%
! TTTGATGAGTTGGAGTGGTT+GGG + chr6.1:15476095-15476114 None:intergenic 40.0%
!!! CTGTCTGATTTTGAGTTGTG+CGG - chr6.1:15474389-15474408 MS.gene67397:intron 40.0%
AAAACATGCCACCATCACGT+GGG - chr6.1:15472173-15472192 MS.gene67397:CDS 45.0%
AAGCGTAATCCCACTAAGTG+GGG + chr6.1:15473198-15473217 None:intergenic 45.0%
AAGGGGAAAAGGTTGAAGAG+AGG - chr6.1:15472428-15472447 MS.gene67397:intron 45.0%
AAGTTTGTCGGGATACTCTG+AGG - chr6.1:15473330-15473349 MS.gene67397:intron 45.0%
AATCATTTGACTGCCGTTGC+CGG - chr6.1:15476896-15476915 MS.gene67397:CDS 45.0%
ACAATCTCACGTCAGCTACA+TGG + chr6.1:15472809-15472828 None:intergenic 45.0%
ACTACAAAGGGGAGCAATGT+CGG - chr6.1:15475736-15475755 MS.gene67397:intron 45.0%
AGAGGAAGGTGAGTAGACAT+AGG - chr6.1:15472446-15472465 MS.gene67397:intron 45.0%
AGTTCAGCAAGTTTCTCAGC+CGG + chr6.1:15472541-15472560 None:intergenic 45.0%
ATCAGACACCGACACATGTT+TGG + chr6.1:15474649-15474668 None:intergenic 45.0%
ATGGACTCATCAGAGTCCAT+CGG + chr6.1:15472325-15472344 None:intergenic 45.0%
ATGGACTCTGATGAGTCCAT+CGG - chr6.1:15472325-15472344 MS.gene67397:CDS 45.0%
CAAGCGTAATCCCACTAAGT+GGG + chr6.1:15473199-15473218 None:intergenic 45.0%
CGTTCTGATCAACCCTTCAA+CGG - chr6.1:15477025-15477044 MS.gene67397:CDS 45.0%
GAGGTTGGAGATATCGAAGT+CGG + chr6.1:15472278-15472297 None:intergenic 45.0%
GATATACAAGTGAGCTGGAG+AGG - chr6.1:15474175-15474194 MS.gene67397:intron 45.0%
GCCAATCTCTCCCAGTATTA+TGG + chr6.1:15475865-15475884 None:intergenic 45.0%
GGAAAAGGTTGAAGAGAGGA+AGG - chr6.1:15472432-15472451 MS.gene67397:intron 45.0%
GGATACTATGACGAGCATCT+GGG - chr6.1:15473477-15473496 MS.gene67397:intron 45.0%
GTTAAGCGACACTCAGTTTG+TGG - chr6.1:15473258-15473277 MS.gene67397:intron 45.0%
TCAAGCGTAATCCCACTAAG+TGG + chr6.1:15473200-15473219 None:intergenic 45.0%
TCCTGGTACCAAACATGTGT+CGG - chr6.1:15474638-15474657 MS.gene67397:intron 45.0%
TGAAATTAACAGCGTGCGAG+AGG + chr6.1:15476165-15476184 None:intergenic 45.0%
TGCACAACTTACAGTCCTTC+AGG - chr6.1:15474236-15474255 MS.gene67397:intron 45.0%
TGTAGCCAATCTCTGTGACT+CGG - chr6.1:15473232-15473251 MS.gene67397:intron 45.0%
TGTAGCTGACGTGAGATTGT+AGG - chr6.1:15472809-15472828 MS.gene67397:intron 45.0%
TTGGAGATATCGAAGTCGGA+CGG + chr6.1:15472274-15472293 None:intergenic 45.0%
! AACATTGAGTTTAGGGTGGG+GGG - chr6.1:15472895-15472914 MS.gene67397:CDS 45.0%
! AAGCTTTGCTTGTTGCTCGA+AGG + chr6.1:15476313-15476332 None:intergenic 45.0%
! AAGGGTTGATCAGAACGAGA+AGG + chr6.1:15477022-15477041 None:intergenic 45.0%
! ATGATCGGCTTAGGGAGTTT+GGG - chr6.1:15473013-15473032 MS.gene67397:intron 45.0%
! GAGATGGGGTTGTTTGAAGT+TGG - chr6.1:15472493-15472512 MS.gene67397:intron 45.0%
! TATGATCGGCTTAGGGAGTT+TGG - chr6.1:15473012-15473031 MS.gene67397:intron 45.0%
!! AAAGGAGTGCCATCGGATTA+TGG + chr6.1:15475276-15475295 None:intergenic 45.0%
!! GGGTTGTTTGAAGTTGGTGA+TGG - chr6.1:15472499-15472518 MS.gene67397:intron 45.0%
!! TTTGATGGGTTAGGGTTTGG+TGG - chr6.1:15472403-15472422 MS.gene67397:intron 45.0%
AACAAACCAAGGGGACCATG+TGG + chr6.1:15476011-15476030 None:intergenic 50.0%
AAGCGACACTCAGTTTGTGG+TGG - chr6.1:15473261-15473280 MS.gene67397:intron 50.0%
ACAAACCAAGGGGACCATGT+GGG + chr6.1:15476010-15476029 None:intergenic 50.0%
ACCAACCGAGTCACAGAGAT+TGG + chr6.1:15473240-15473259 None:intergenic 50.0%
ACCAGGACAAACCTAACCTG+AGG + chr6.1:15474625-15474644 None:intergenic 50.0%
ACCATCGCGAATAGGGTCTT+TGG + chr6.1:15472968-15472987 None:intergenic 50.0%
ACCGACACATGTTTGGTACC+AGG + chr6.1:15474642-15474661 None:intergenic 50.0%
AGCGACACTCAGTTTGTGGT+GGG - chr6.1:15473262-15473281 MS.gene67397:intron 50.0%
ATCCAGGCATTCAACCCACA+TGG - chr6.1:15475993-15476012 MS.gene67397:intron 50.0%
ATGAAGCACGAACACTCCTC+AGG - chr6.1:15474606-15474625 MS.gene67397:intron 50.0%
GAAAACATGCCACCATCACG+TGG - chr6.1:15472172-15472191 MS.gene67397:CDS 50.0%
GCATCTCAGGAGTTTGTCTG+TGG - chr6.1:15472369-15472388 MS.gene67397:intron 50.0%
GGACTGTAAGTTGTGCAGAG+AGG + chr6.1:15474233-15474252 None:intergenic 50.0%
GGGATACTATGACGAGCATC+TGG - chr6.1:15473476-15473495 MS.gene67397:intron 50.0%
GGTCCTAGGCCAGGATAAAA+AGG - chr6.1:15474994-15475013 MS.gene67397:CDS 50.0%
GGTTGATCAGAACGAGAAGG+CGG + chr6.1:15477019-15477038 None:intergenic 50.0%
TCCTCAGGTTAGGTTTGTCC+TGG - chr6.1:15474621-15474640 MS.gene67397:intron 50.0%
TCGTGGTCGCTCTAACTTCA+TGG - chr6.1:15477048-15477067 MS.gene67397:CDS 50.0%
TGGACTCATCAGAGTCCATC+GGG + chr6.1:15472324-15472343 None:intergenic 50.0%
TGGACTCTGATGAGTCCATC+GGG - chr6.1:15472326-15472345 MS.gene67397:CDS 50.0%
TGGAGATATCGAAGTCGGAC+GGG + chr6.1:15472273-15472292 None:intergenic 50.0%
TTCCATGGATGGGTCTGAGA+TGG - chr6.1:15472477-15472496 MS.gene67397:intron 50.0%
! AGCAGTGTTGAGTTTGTGGG+TGG - chr6.1:15473406-15473425 MS.gene67397:intron 50.0%
! TCCATGGATGGGTCTGAGAT+GGG - chr6.1:15472478-15472497 MS.gene67397:intron 50.0%
!! ACATGGTCCCCTTGGTTTGT+TGG - chr6.1:15476010-15476029 MS.gene67397:intron 50.0%
!! ACCATGGAAAGGAGTGCCAT+CGG + chr6.1:15475283-15475302 None:intergenic 50.0%
!! CTAACTGTAGTGGACGCTAC+TGG - chr6.1:15475347-15475366 MS.gene67397:intron 50.0%
!! GAGGAGTGTTCGTGCTTCAT+AGG + chr6.1:15474606-15474625 None:intergenic 50.0%
!! GGTTAGGGTTTGGTGGTGAA+GGG - chr6.1:15472410-15472429 MS.gene67397:intron 50.0%
!! GTTAGGGTTTGGTGGTGAAG+GGG - chr6.1:15472411-15472430 MS.gene67397:intron 50.0%
!! GTTTGGTGGTGAAGGGGAAA+AGG - chr6.1:15472417-15472436 MS.gene67397:intron 50.0%
!! TTGAGTTTGTGGGTGGACTG+AGG - chr6.1:15473413-15473432 MS.gene67397:intron 50.0%
AACGGAAGGTGGTGTCTGAG+TGG + chr6.1:15472216-15472235 None:intergenic 55.0%
ACGGAAGGTGGTGTCTGAGT+GGG + chr6.1:15472215-15472234 None:intergenic 55.0%
AGACACCACCTTCCGTTTCG+CGG - chr6.1:15472219-15472238 MS.gene67397:CDS 55.0%
AGGTGGTGTCTGAGTGGGAA+CGG + chr6.1:15472210-15472229 None:intergenic 55.0%
ATCGGGAAGTCAGCGTCAGA+GGG - chr6.1:15472343-15472362 MS.gene67397:CDS 55.0%
ATGCCAGGTTGTGTCTGCTG+GGG + chr6.1:15476995-15477014 None:intergenic 55.0%
CACTCCTTTCCATGGTGCAG+CGG - chr6.1:15475287-15475306 MS.gene67397:intron 55.0%
CATGCCAGGTTGTGTCTGCT+GGG + chr6.1:15476996-15477015 None:intergenic 55.0%
CGACACTCAGTTTGTGGTGG+GGG - chr6.1:15473264-15473283 MS.gene67397:intron 55.0%
CGTCGAAGTTTGCCGCGAAA+CGG + chr6.1:15472234-15472253 None:intergenic 55.0%
CTGCTGCACGATCGAAAGAG+AGG - chr6.1:15474145-15474164 MS.gene67397:intron 55.0%
GAAGTTTGCCGCGAAACGGA+AGG + chr6.1:15472230-15472249 None:intergenic 55.0%
GATCAACCCTTCAACGGTCG+TGG - chr6.1:15477031-15477050 MS.gene67397:CDS 55.0%
GCACGAACACTCCTCAGGTT+AGG - chr6.1:15474611-15474630 MS.gene67397:intron 55.0%
GCCAAAGACCCTATTCGCGA+TGG - chr6.1:15472964-15472983 MS.gene67397:intron 55.0%
GCGACACTCAGTTTGTGGTG+GGG - chr6.1:15473263-15473282 MS.gene67397:intron 55.0%
TACGTAGATGGTCCTAGGCC+AGG - chr6.1:15474985-15475004 MS.gene67397:CDS 55.0%
TCCGATGGCACTCCTTTCCA+TGG - chr6.1:15475279-15475298 MS.gene67397:intron 55.0%
TTCAACCCACATGGTCCCCT+TGG - chr6.1:15476002-15476021 MS.gene67397:intron 55.0%
! ATTGAGTTTAGGGTGGGGGG+AGG - chr6.1:15472898-15472917 MS.gene67397:CDS 55.0%
! CCATGGATGGGTCTGAGATG+GGG - chr6.1:15472479-15472498 MS.gene67397:intron 55.0%
! GACCATGTGGGTTGAATGCC+TGG + chr6.1:15475998-15476017 None:intergenic 55.0%
! TTGAGTTTAGGGTGGGGGGA+GGG - chr6.1:15472899-15472918 MS.gene67397:CDS 55.0%
!! GCCAATCTCTGTGACTCGGT+TGG - chr6.1:15473236-15473255 MS.gene67397:intron 55.0%
!! GGGTTAGGGTTTGGTGGTGA+AGG - chr6.1:15472409-15472428 MS.gene67397:intron 55.0%
!! GGTTTGTTGGGGGTGCTCTA+AGG - chr6.1:15472930-15472949 MS.gene67397:CDS 55.0%
AGAGCGACCACGACCGTTGA+AGG + chr6.1:15477041-15477060 None:intergenic 60.0%
AGTCCATCGGGACAGCGTCA+GGG + chr6.1:15472312-15472331 None:intergenic 60.0%
ATCGAAGTCGGACGGGTCGA+AGG + chr6.1:15472266-15472285 None:intergenic 60.0%
CAACCCCAGCAGACACAACC+TGG - chr6.1:15476989-15477008 MS.gene67397:CDS 60.0%
CATCGGGAAGTCAGCGTCAG+AGG - chr6.1:15472342-15472361 MS.gene67397:CDS 60.0%
CATGCCGCTGCACCATGGAA+AGG + chr6.1:15475294-15475313 None:intergenic 60.0%
CCCCATCTCAGACCCATCCA+TGG + chr6.1:15472482-15472501 None:intergenic 60.0%
GAGCGACCACGACCGTTGAA+GGG + chr6.1:15477040-15477059 None:intergenic 60.0%
GCATGCCAGGTTGTGTCTGC+TGG + chr6.1:15476997-15477016 None:intergenic 60.0%
GGAAGTCAGCGTCAGAGGGA+CGG - chr6.1:15472347-15472366 MS.gene67397:intron 60.0%
GGTTGTGTCTGCTGGGGTTG+AGG + chr6.1:15476989-15477008 None:intergenic 60.0%
GTTTGCCGCGAAACGGAAGG+TGG + chr6.1:15472227-15472246 None:intergenic 60.0%
TGGTGTCTGAGTGGGAACGG+CGG + chr6.1:15472207-15472226 None:intergenic 60.0%
! CACTCAGTTTGTGGTGGGGG+AGG - chr6.1:15473267-15473286 MS.gene67397:intron 60.0%
! TGAGTTTAGGGTGGGGGGAG+GGG - chr6.1:15472900-15472919 MS.gene67397:CDS 60.0%
! TTTGTGGTGGGGGAGGACTG+AGG - chr6.1:15473274-15473293 MS.gene67397:intron 60.0%
!! AGGGGGCGCTGAGGTTTGTT+GGG - chr6.1:15472918-15472937 MS.gene67397:CDS 60.0%
!! CTCTGACGCTGACTTCCCGA+TGG + chr6.1:15472344-15472363 None:intergenic 60.0%
ATCGGGACAGCGTCAGGGGA+CGG + chr6.1:15472307-15472326 None:intergenic 65.0%
CGTCAGAGGGACGGCATCTC+AGG - chr6.1:15472356-15472375 MS.gene67397:intron 65.0%
GAACGAGAAGGCGGCATGCC+AGG + chr6.1:15477010-15477029 None:intergenic 65.0%
GAGTCCATCGGGACAGCGTC+AGG + chr6.1:15472313-15472332 None:intergenic 65.0%
GCACTCATGCCGCTGCACCA+TGG + chr6.1:15475299-15475318 None:intergenic 65.0%
GTCCATCGGGACAGCGTCAG+GGG + chr6.1:15472311-15472330 None:intergenic 65.0%
TGAGTGGGAACGGCGGTGGT+GGG + chr6.1:15472200-15472219 None:intergenic 65.0%
TGTCTGAGTGGGAACGGCGG+TGG + chr6.1:15472204-15472223 None:intergenic 65.0%
! GAGTTTAGGGTGGGGGGAGG+GGG - chr6.1:15472901-15472920 MS.gene67397:CDS 65.0%
! TGGTGGGTCCCACGTGATGG+TGG + chr6.1:15472184-15472203 None:intergenic 65.0%
!! GAGGGGGCGCTGAGGTTTGT+TGG - chr6.1:15472917-15472936 MS.gene67397:CDS 65.0%
!! GGGGCGCTGAGGTTTGTTGG+GGG - chr6.1:15472920-15472939 MS.gene67397:CDS 65.0%
!! GGGGGCGCTGAGGTTTGTTG+GGG - chr6.1:15472919-15472938 MS.gene67397:CDS 65.0%
!! GGGGTGCTCTAAGGCGTGTC+TGG - chr6.1:15472939-15472958 MS.gene67397:intron 65.0%
ACAGCGTCAGGGGACGGGAG+AGG + chr6.1:15472301-15472320 None:intergenic 70.0%
AGGGGACGGGAGAGGGAGGT+TGG + chr6.1:15472293-15472312 None:intergenic 70.0%
CAGCGTCAGGGGACGGGAGA+GGG + chr6.1:15472300-15472319 None:intergenic 70.0%
CTGAGTGGGAACGGCGGTGG+TGG + chr6.1:15472201-15472220 None:intergenic 70.0%
GTCCCCTGACGCTGTCCCGA+TGG - chr6.1:15472306-15472325 MS.gene67397:CDS 70.0%
TCGGGACAGCGTCAGGGGAC+GGG + chr6.1:15472306-15472325 None:intergenic 70.0%
!! CGGTGGTGGGTCCCACGTGA+TGG + chr6.1:15472187-15472206 None:intergenic 70.0%
CGTCAGGGGACGGGAGAGGG+AGG + chr6.1:15472297-15472316 None:intergenic 75.0%
!!! GGTGGGGGGAGGGGGCGCTG+AGG - chr6.1:15472909-15472928 MS.gene67397:CDS 85.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 15472121 15477090 15472121 ID=MS.gene67397
chr6.1 mRNA 15472121 15477090 15472121 ID=MS.gene67397.t1;Parent=MS.gene67397
chr6.1 exon 15476621 15477090 15476621 ID=MS.gene67397.t1.exon1;Parent=MS.gene67397.t1
chr6.1 CDS 15476621 15477090 15476621 ID=cds.MS.gene67397.t1;Parent=MS.gene67397.t1
chr6.1 exon 15474954 15475086 15474954 ID=MS.gene67397.t1.exon2;Parent=MS.gene67397.t1
chr6.1 CDS 15474954 15475086 15474954 ID=cds.MS.gene67397.t1;Parent=MS.gene67397.t1
chr6.1 exon 15472872 15472956 15472872 ID=MS.gene67397.t1.exon3;Parent=MS.gene67397.t1
chr6.1 CDS 15472872 15472956 15472872 ID=cds.MS.gene67397.t1;Parent=MS.gene67397.t1
chr6.1 exon 15472121 15472365 15472121 ID=MS.gene67397.t1.exon4;Parent=MS.gene67397.t1
chr6.1 CDS 15472121 15472365 15472121 ID=cds.MS.gene67397.t1;Parent=MS.gene67397.t1
Gene Sequence

>MS.gene67397

ATGGAACCAAACAACTTCACAAGAAAACCACCACCAGTTATAATTGACTTAGAAAACATGCCACCATCACGTGGGACCCACCACCGCCGTTCCCACTCAGACACCACCTTCCGTTTCGCGGCAAACTTCGACGATCTTCTCACCTTCGACCCGTCCGACTTCGATATCTCCAACCTCCCTCTCCCGTCCCCTGACGCTGTCCCGATGGACTCTGATGAGTCCATCGGGAAGTCAGCGTCAGAGGGACGGCATCTCAGGAGTTTGTCTGTGGATTCAGAGTTTTTTGATGGGTTAGGGTTTGGTGGTGAAGGGGAAAAGGTTGAAGAGAGGAAGGTGAGTAGACATAGGTATAGTAGTTCCATGGATGGGTCTGAGATGGGGTTGTTTGAAGTTGGTGATGGTGTGAAGAAATCTATGCCGGCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGTTTATCATCATCTTCATCACAAGCAAAATCACTTTTTATAATCACTTTTTGGAGTTTGTTTTGAAAGAAATTAATTTTATTTATGTACTAAATTTAAGGTTCTTGTTTTTCTTTTTATGAAAAAAAAATTAATATTTAGTTTTTAATTAGAGTCTATATAAGTTTAATGAGTATGTGGTATGATATATGATAGAATATTATAGCGTTGTTTGATCCATGTAGCTGACGTGAGATTGTAGGATAAGACTTGGTTGTTGTTGTTTGTTCAATTTGTGTGACTTAATTTGACTCAGTTGGTTAAGAAACATTGAGTTTAGGGTGGGGGGAGGGGGCGCTGAGGTTTGTTGGGGGTGCTCTAAGGCGTGTCTGGTTGCCAAAGACCCTATTCGCGATGGTTTATTTAAAAAAATTGTATGTGTTTATGATCGGCTTAGGGAGTTTGGGTATGTAGAGAGAAGATTATGTAGTTAGGAGAGTAAATCAGATGGAGGGTTGTCAAATTACTACAAGTAGAGGAAGACCTAGAAAAACTTTAAGAGAAGTTATTAAGAAAGATTTAGAGATTGATAGAACTTTATGACGTTGTTTGATGCATGTAGTTTACCCCACTTAGTGGGATTACGCTTGATTATTGTTGTTATGTAGCCAATCTCTGTGACTCGGTTGGTTAAGCGACACTCAGTTTGTGGTGGGGGAGGACTGAGGTTTGAAATCAGTAGAGAGATTAGTCTCTAACTGAAGTTTGTCGGGATACTCTGAGGAGCCTAATACCGTAAATTATATATACGTTGACCTAATTTGTGAGTCATGGTTAAGCAGTGTTGAGTTTGTGGGTGGACTGAGGTTTGATCTCAGAAGAGATTAGTCTCGTACTAAAGTTTCTTGGGATACTATGACGAGCATCTGGGTGTCAAATACCCTACTTACGATGGTTTATTAAAACAAAATTAATGTATTTATGATCGATTCTAAGTTTAGAAGTTTGGAATCTGGAAGTTAATCCTATACATATGGAATTTCTGGTCAATGAGTAAAACCAATTGTGTTTGTGAATTTGATCTTGTCATCGATTTGTTTTAGTTTTTTATGTGTCTTTTATTTTGTAATGGATAATTTGGAACACAATTAGATTAAAATTTGTTTTCACCCTTTGTTTTAAGATGTTTTTTCTTCACAAAAAGATCATGTTCGTGTTAAATTGATTGTGTTTGTGGTTGATTCTAAGATTAGGGGTTTGAATTTTGGACCTATATTTCAGATGGTTAATCCTAGGACCAACATATATAGAATTTTAGTCAAAGACTAAAAACAATTGTGTTTGTGTGTCTGATCTTATCAGAAATTTGAATTTTAGTTTAGTGTTTTATTTTGTAATTGATGATTGTAATGAATTGTTTCTGTTGATGATAACATGCTTTCTAATTATATGATGTAACATGAGTTTTTCTGAATAATGAAAAAAAAAAGATAAAAGGGTGTTTGGATTATGTAGAATTTGGCTTGATGCTTAAAATGTTGTATGTTTGTTTACAGGATTCTTGCTAATAGGCAATCTGCTGCACGATCGAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAAGTGCAGACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTTACAGTCCTTCAGGTATGTTATTTCCTTTTCATTTCACTGTTCTGAATTGTAGCTTTCAATGAATAGATGTGAATTTGTTTGTAACATGTTCTTGTTGGTGGTTTATGGAGCCCTCCATCTTTAACAATGATGTAGATTTATTTCTGTCTGATTTTGAGTTGTGCGGTCATAACTGTTTATGGAACCCACATAATACCAAGGATATGCATGTATGCATGTGTATAGGTACTAGGTAGGTATTTATGGTTATATGGATATATATGTGCATATATGTACACATATACATACATACAAATATATAGTTTGGTGAAATTAAATTTAATTACTCTATTACATCCTATATATTTTGCGTTACAACCTATGAAGCACGAACACTCCTCAGGTTAGGTTTGTCCTGGTACCAAACATGTGTCGGTGTCTGATATCGACACATATGATTACATTGAATTATGTCATTTTCTTAAGTCTAAGTGTTCTATGAAATGAGGCTGTTTTGATCAAATTTCCACTGATTCTGATTGTGAACCATTTAACCTGAAACTGCTTAATCTGAAACAAATTATAGACCTCATTTTGATTATGATTGCATTATCCGTCTTCTGTTTTGTGGTTTAGTTCGTTATTCACTACTAGTGTCATTAAACATCTTCCCTACTTTCTACGTTTTGAAAAGTAATTTCACTATAAGCAGCTCTTTTTTGAGCTCTGCCAATTTCGTGCTTGTATTTCCACAAAATTTTACGTAGATGGTCCTAGGCCAGGATAAAAAGGTTTTTTTTTTCTTTTCTAAAGTCCATCCAATCCTATTTTCCTTGACTTAGCTATACAATCATGCTTACGAAAAATCGGTTTCTGATGCTGTCACTGTCCATGTTTTCCTAACTAAAAGATGTACTGCAGTTTGTCATACAGTCTGCAGTGATCTAATTATTTTCATGCCTAATTATAAGTCGAGCCTTCACCATATCGTATAAGATTTTTCGGAAACCATTTTACATCGTTGAAGTAGGTTGGTTTATTTTCTGATCCATAATCCGATGGCACTCCTTTCCATGGTGCAGCGGCATGAGTGCCAGAAATAAAATCAAATTTATGTAACAACTAACTGTAGTGGACGCTACTGGATGCATATCTTTGCATAGATAGATGACATCATTGCTCCATAAATTAATCACAGTATCTTTTTATATGCTAATTTTGTGGTATTGTGATGAGTGAAGATGACAAGATTCTTTGTGTACTCCATCTGATCCTTTTACGTCACTTTAGTAGAATAATAATTTTGTTCCTATTTATATGTCTTTTTCAAAGTTCATTACAACACTCACTATTATTTTGTCAAAAAAGTGAAACACATTACAACACTCACTGTTATTTTGTCAAAAAAGTTAAACAAGATGATAAATAGTTTAGGCTATTATAGGAAAAAGACAAATAATTCAACAAAATTTAGTAATTTTCTTGGTATGTTAAATGACCTTAAAACGACAACTACAAAGGGGAGCAATGTCGGAATATTCTCAAGGATTATTCCATTTAGTTACTTCTATGTAATACAATGGTCTTCTTAGTTCCTTTGAGTTTTCTGACTAGTGACTATGTTAGAGGGCTTTCTTCCATAATACTGGGAGAGATTGGCATGCATTGTTCTATAATATTAGATTCACGATTTTGAAAATAGATGTTGCGATTCTCGATTTGATATTAACCATCCTTAAGACAGATATTTTTGAGTAAAGTGGTAATTATCCAGGCATTCAACCCACATGGTCCCCTTGGTTTGTTGGATTACAGATTCAAAACATAATTGTTGCCTTTTCATGTGATTTTTAGATGGATAGGTGGTCCCAACCACTCCAACTCATCAAATATCTATGATCTAAATTTTTACTGATTGAATTAATTTAAATGTTATGCCTCTCGCACGCTGTTAATTTCAATTTGTGTAAACTTAAAAAATGTGCAAAAGAATAAAACGGAAGCAAACTAATCATTGAATCATGATGCAGAGAGACACCACTGATTTGACTGCTCAGAATAAGGAGCTCAAAATGAAGTTAGATGCCTTCGAGCAACAAGCAAAGCTTAGAGAAGGTATGTATCATTTCATATTTCTTGATCCATAAAAAAGTGGATTTTGCTTCCCCCTTTATCACATCTTTATTGAATTGGACTAGAAAAAGGCTGAATCATTCATTTGTTTGTTGTGCGAAAAAAGATCTTGTGAATCTTCATTAATATCTATCAATTTTACCTTTTTTAAAACTGTGCTACAAAAGTTGGCTTAAATACAGTTTTGGTCCTGCTATTTAGCATCATTTACGATTTTGGACCCTTAGTTTTGAAAATATCCGATTTTTCCCTATCTAACGTATTTAGGGATGCTTTTATAAGCAAGATTAAATGTGAATCTACTTAGACAATGTAACACTTTAAATTTAGTTGCTTTTGTGATATAAATCGGTGTATATTTTGATGACATGAAAGATTAATTCCAAAGAAATATCATTGCTTGAAATTTGACCATTTTTGCAAACACTTTTGCTTGTTATCAAGTTTTACCATTTAAATATGAACATGGCTACACTTTGTGATTGCAGATCTCAATGAAGCATTGAAGAAAGAACTTCAACGCCTTAGGGCGCAAAAGAATCATTTGACTGCCGTTGCCGGTAATCCTTCATTTAACGGGATGTTCTCGCAATTTGCTACACAATTAACCATGCAACAAATGAGTAATCCTCAACCCCAGCAGACACAACCTGGCATGCCGCCTTCTCGTTCTGATCAACCCTTCAACGGTCGTGGTCGCTCTAACTTCATGGACTTCAATTACCAAAAGTAG
Protein sequence

>MS.gene67397.t1

MEPNNFTRKPPPVIIDLENMPPSRGTHHRRSHSDTTFRFAANFDDLLTFDPSDFDISNLPLPSPDAVPMDSDESIGKSASEGRHLRSLSVDSEFFDGLGFGGEGEKVEERKVSRHRYSSSMDGSEMGLFEVGDGVKKSMPAEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTVLQRDTTDLTAQNKELKMKLDAFEQQAKLREDLNEALKKELQRLRAQKNHLTAVAGNPSFNGMFSQFATQLTMQQMSNPQPQQTQPGMPPSRSDQPFNGRGRSNFMDFNYQK