AlfalfaGEDB | MS.gene67679

M. sativa cultivar XinJiangDaYe / MS.gene67679

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67679.t1	XP_024636542.1	98.5	390	6	0	34	423	1	390	2.80E-226	794.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67679.t1	O49840	68.4	370	108	4	34	398	1	366	4.2e-146	519.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67679.t1	A0A396IIJ2	98.5	390	6	0	34	423	1	390	2.0e-226	794.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67679.t1	MTR_4g108270	98.649	370	5	0	54	423	24	393	0.0	756
MS.gene67679.t1	MTR_5g038870	64.948	388	128	3	34	420	1	381	0.0	522
MS.gene67679.t1	MTR_2g096950	55.882	374	145	5	34	400	1	361	6.59e-151	434
MS.gene67679.t1	MTR_5g079840	55.313	367	155	4	34	398	1	360	2.30e-146	423
MS.gene67679.t1	MTR_7g061660	61.635	318	118	3	84	398	42	358	7.59e-142	411
MS.gene67679.t1	MTR_5g088400	60.661	333	122	5	87	417	42	367	2.98e-140	407
MS.gene67679.t1	MTR_3g040800	63.487	304	108	3	97	398	90	392	8.23e-136	396
MS.gene67679.t1	MTR_3g067795	51.491	369	167	4	33	398	2	361	3.97e-133	388
MS.gene67679.t1	MTR_2g096970	55.015	329	144	3	73	398	19	346	4.59e-133	387
MS.gene67679.t1	MTR_3g067795	51.491	369	167	4	33	398	2	361	6.52e-133	388

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67679.t1	AT2G02800	68.378	370	108	4	34	398	1	366	0.0	512
MS.gene67679.t1	AT2G02800	68.378	370	108	4	34	398	1	366	0.0	512
MS.gene67679.t1	AT1G14370	70.393	331	96	2	85	414	56	385	2.49e-173	491
MS.gene67679.t1	AT1G26970	65.000	380	123	6	34	408	1	375	4.66e-171	485
MS.gene67679.t1	AT1G69790	63.342	371	124	6	34	398	1	365	3.51e-164	467
MS.gene67679.t1	AT1G69790	70.927	313	87	3	87	398	45	354	1.04e-163	465
MS.gene67679.t1	AT1G74490	57.614	394	133	5	34	409	1	378	1.97e-157	450
MS.gene67679.t1	AT5G02290	56.800	375	144	5	34	405	1	360	3.88e-151	434
MS.gene67679.t1	AT5G02290	56.800	375	144	5	34	405	1	360	3.88e-151	434
MS.gene67679.t1	AT1G07570	64.151	318	110	3	84	398	37	353	3.84e-150	432

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Find 122 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTCAGACTTTGGAT+TGG	0.572592	8.4:+18780872	MS.gene67679:CDS
AAAATGTACCAGAATTGGGT+TGG	0.506860	8.4:-18778687	None:intergenic
AAATGTACCAGAATTGGGTT+GGG	0.501783	8.4:-18778686	None:intergenic
AACAATTGAGTGCTTCTAAA+AGG	0.297455	8.4:-18779311	None:intergenic
AACATGAGAACGATCACCAG+TGG	0.654574	8.4:-18780907	None:intergenic
AACCTACCAGCCACTCCTTA+TGG	0.333885	8.4:-18779622	None:intergenic
AAGAATCAAAGTTGCTATTG+GGG	0.570611	8.4:+18780498	MS.gene67679:CDS
AAGGAAATTGTTTCGGATTA+TGG	0.164610	8.4:+18781724	MS.gene67679:CDS
AAGGCTGCAAGGCCTGGATG+TGG	0.547646	8.4:+18779554	MS.gene67679:CDS
AATGATAGTTTAATTGGACA+AGG	0.639234	8.4:+18779485	MS.gene67679:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCCTTGAAAAATGAAGA+AGG	-	chr8.4:18780710-18780729	None:intergenic	30.0%
AACAATTGAGTGCTTCTAAA+AGG	-	chr8.4:18779314-18779333	None:intergenic	30.0%
AAGCCTTGAAAAATGAAGAA+GGG	-	chr8.4:18780709-18780728	None:intergenic	30.0%
AAGGAAATTGTTTCGGATTA+TGG	+	chr8.4:18781724-18781743	MS.gene67679:CDS	30.0%
AAGTAAAATCCAGTCAAGAA+TGG	-	chr8.4:18778171-18778190	None:intergenic	30.0%
AATTATCTACCGTGATTTCA+AGG	+	chr8.4:18780561-18780580	MS.gene67679:CDS	30.0%
ACAAGAATCAAAGTTGCTAT+TGG	+	chr8.4:18780496-18780515	MS.gene67679:CDS	30.0%
ATAGTTTAATTGGACAAGGA+GGG	+	chr8.4:18779489-18779508	MS.gene67679:CDS	30.0%
ATTAATTAGACACCGTTAAG+AGG	+	chr8.4:18780115-18780134	MS.gene67679:intron	30.0%
ATTATGGACACAAGATTACA+AGG	+	chr8.4:18781740-18781759	MS.gene67679:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	18777820	18781952	18777820	ID=MS.gene67679
chr8.4	mRNA	18777820	18781952	18777820	ID=MS.gene67679.t1;Parent=MS.gene67679
chr8.4	exon	18777820	18777890	18777820	ID=MS.gene67679.t1.exon1;Parent=MS.gene67679.t1
chr8.4	CDS	18777820	18777890	18777820	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1
chr8.4	exon	18778612	18778700	18778612	ID=MS.gene67679.t1.exon2;Parent=MS.gene67679.t1
chr8.4	CDS	18778612	18778700	18778612	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1
chr8.4	exon	18779297	18779637	18779297	ID=MS.gene67679.t1.exon3;Parent=MS.gene67679.t1
chr8.4	CDS	18779297	18779637	18779297	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1
chr8.4	exon	18779892	18780030	18779892	ID=MS.gene67679.t1.exon4;Parent=MS.gene67679.t1
chr8.4	CDS	18779892	18780030	18779892	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1
chr8.4	exon	18780470	18780606	18780470	ID=MS.gene67679.t1.exon5;Parent=MS.gene67679.t1
chr8.4	CDS	18780470	18780606	18780470	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1
chr8.4	exon	18780861	18780984	18780861	ID=MS.gene67679.t1.exon6;Parent=MS.gene67679.t1
chr8.4	CDS	18780861	18780984	18780861	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1
chr8.4	exon	18781582	18781952	18781582	ID=MS.gene67679.t1.exon7;Parent=MS.gene67679.t1
chr8.4	CDS	18781582	18781952	18781582	ID=cds.MS.gene67679.t1;Parent=MS.gene67679.t1

Gene Sequence

>MS.gene67679

ATGTTCCATTGGTGCGTAGGGGCACTTGCCTTCCATGCCTGGTTTCACTCTGATGATTCTATTGATTCTTGGTGTACTTAGCTGTCAATGTTTAATTGGTGGCTTTTCTTTTTTATCAAACAGTTTAATGGCTAGACTTATACACATAAAATTGTTTAAAGAACTTTATGAATAGATTAAAAAATATTAACTAACTTTTTGTGGTTCTTGATATAACCTTTTTATTTTTATTTTAAGATACAATGTTTTTTTTTTGTTTTTGTAAATAAAAATGTTTTTATTGTGGCTGAATATATAAAAATTATGCATAAACTATAATTATTAAAAATATTTGAATATTGACTAAAACCATTCTTGACTGGATTTTACTTACCTTATGGTTGAAACTCCAAATTACTAGGGCCTCCTTCCTCTAGTAACATGACGGTTAACAAAAAACAAAAGCATTTGTTAAAAATATCTAAAGTCATATTTAAACAAGAGAAATACTTATATAAACACAACCACGAATAAAATGTATTTGGACACACATAAAAAAATACTTATAAATCCTAGTACATGATTAAAAAGTGCACCCTTGTTTGTATTTTGTATTCCAAATGTTTATGTTCTTTTTTTGGTGAGAAATGTTTATGATGTATTAATTCGTAAAAATAATAGAACGAAAGGTGTTCTTCTCTGGTAACACGGGAGAAGGACATTGTTGCAAGGGAACCACAAGAAACAAAACATTTCTAGGTCACGTTGCATGATGCATGTCGAGGATTAAACCTATAGTTTTTTTCTTTTTAGGTTTTCTAAAGGAACTTTGGTTCCTTTGATGGGAAATTGCTTTGGAAGTCGTTACAAGGTTCATGAACCTTTCTCCCAACCCAATTCTGGTACATTTTTTATGTCACCCTAATACATATTGTTATTCATATTCTTATTATATTATTTCGTGCATGTGTATGTGTTTCAATTCATGAGAATGTATATGCAATGCAATATATACGATAAACAATGGTTGCAACAAATATTTGGAGATTGTGGATTTTTTTTTTTTGAGGGTTAATTTTTATTGTTTCACTGCTTAGGTTGAGCAGAATTTGATTTTCTGTTAACTTTGTGTTTAAGGTCTTGATGTTACCCTTGATGGGTTTATGAAGAAAATGATTGTGGTGTGTGAAAATTTATTGTGAATGAATTGATTTGGTAAACTTGATTTGAGTGTGAAATAGTTTATGTTTGGATATATTTGCATAAATGAGTTGAACAATAAACTTAAGTGTAAATATCATATCTTGAATCAAGAAATACAAATCATAGCTTTAAGTTAGAATCAATTCTAGAGAAAAAATCAATTTTAAATTTATGTGTTTAGAATCACTTTTGACTCTTCCACCGCGAAACTAAACATACGTGATTGCATATTCTATTTTAGCGACTTATTGTTAATAGTCTTTAATCTTGTGCTAAATTGAAAAACATTTTGTAGAGGTTATAAAAGTTCCTTTTAGAAGCACTCAATTGTTGGTTCACTCAAGTGCAATAGTACATGGACACAATGATGGAGGTAAACCTGAGATTCTCCCAACTCCAAGATCTGAAGGGGACATACTTTCTTCTCCACATTTAAAAGCCTTCACATTTAAGGATCTTAGGAATGCCACTAAAAATTTCAGTAATGATAGTTTAATTGGACAAGGAGGGTTTGGTTATGTTTATAAAGGGTGGATTGATGCTCAATCACTTAAGGCTGCAAGGCCTGGATGTGGAACTGTTGTAGCTGTCAAGAAGCTTAAGCCTGAAGGTTTTCAAGGCCATAAGGAGTGGCTGGTAGGTTTGGCATTCAATTCCGCTGTTTTTTTTCGGTATATCTTATTTTGGAATGAATTAAGAGTTTAATGAATATGCACCGTTAGTGTAAAGATTTTACATTGACATCCAATCACAATTTTTTCATTTGTCACATCTTTGTTGGGTTGACAAGTTGTGGTTGGTTGTTAGTGTAAAACACTTTTAGTACATTGATAGTGCATGTTTCATTTTCTGATAAATTGAACTGTACTCATAGTTTTCTTTATTTGTAGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTACTGGATACTGCTTGGATGGGGATAACAGGCTTCTAGTCTATGAGTACATGCCGAATGGAAGCTTGGAAAAACATCTATTTAGTAGAAGTATGTTGATACCTTCGGTAGATTATATAAGGCTTCCGATATACACTTGAGTCCACTATTATTTTTAATAGAAGAGTTATTAGTATTAATTAGACACCGTTAAGAGGTGTCTGAACATGTGTCTGAGGCGTGTCAGATAAGTTTCGGGGTGTGAAACGTGTCTGACACGCCGACATGGTACTTTAGAGAGGTATTAGTGCTTCATAGATGGATCACAATGAGTACTCCAATCTACTTTAACAGAATCGCGCTTCTAGCTTATGAGTACATATGCACAAAGGAACCTTGAAAAATAATCTATTTTGCAGTATGTTGATGCCTTTAGTAACTAATAGAAGTTTCAGATATACTCTTGAGTACACTAAATTTAACATTTTGCAAATCAAGCAAACCTTACCACTTAATTGTGTAATAAGAACTATGGAACTGTTAATTGCAGAGGGCACACAACTACTTCCTTGGGCAACAAGAATCAAAGTTGCTATTGGGGCTGCTCGAGGTCTCACCTTCCTTCATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGACTCGGTATGTTGATTAAATATCAGCATTGCCAGCTTACAAAATGTGTTGTTATAAACTTCTTTTAGCTGTATCTTCTTTATCTCTTATCTATTTTATTTTTATCCCTTCTTCATTTTTCAAGGCTTTAAAATGAAATGCACACCTTAATTTAATGGATCAGTGGACTTAGAATTTTCTGATGGAAAGTTCATTTTAACTTTATTATTTTCTAGCATTCTGGCATCTTAATAATGTGTTCAAATATTATACTAATGCAGGAATTTAATGCAAAACTGTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCGTTCTCATGTTTCCACTCAAGTCCTAGGCACTCAAGGCTATGCTGCTCCTGAATATATTGCCACAGGTTGGAGTTTTTTCTCTTAAACTTTTCTTTTTAATGTATTTTGGTTCATCAAATTTTTTTTTTATCAGCTTCCTTATTTTCAATGATTTTAGAATCTTTTCTTTGGATTATTAATAGTGAATCAAACTTGACTTCATGAACATCACTCAAAATTGTGAATCAACTAGGTGTGCTGAATGAAATTTCACAGGTCAACCAACTTTTAAAGTGAAATCTAGCATCTACATTTTCCATGTATACATATGCTTTCTGTTCATGTTCATCTAGAAAATGTAGAGGTGTGTAGATCTTGCCGAGTCATATAAACCATTTAGCCACCACAAATCTTATGCTGTTAAATATATCAATGACTTTTTAAGTATTTACTTGGTGTCTGACCGAAGTATCAATGACTTTTTTTCACTAACTGATGAATTTGATTCCCAGATATTTACAAAAAATATTGCAGCTAACTTTTTTATATACAATTTGCTAGTGTATATACATCACACACCCTTTGGTTCATATGCAAATATGGATTATTGTTATCCTTTTGAGATATCTTAGCAAAGCGGTGTTTTGTTTGCAAAATATGATGACCAAAAAAACTTTGATCAGGTCGGCTGACAACAAGGTGCGATGTCTATAGCTTCGGCGTTGTGCTATTGGAACTACTATCAGGGCGCAATGCAGTCGATAAAACAAAATCAGGAGTGGAACATAATCTGGTAGATTGGGCAAGACCATACTTGGGTGATAGAAGGAAATTGTTTCGGATTATGGACACAAGATTACAAGGGCAGTATCCACAAAGGGCGGCTTACACCGCTGCAATTCTTGCATTACAATGTATTAGTGAGGCCAAATTTAGACCACAAATGTCCGAGGTTTTGACTACTTTGGAACATTTGCCAGTCATCAGACATTCAGCTAGTCCTTCTAGATTCGAGGAGAAACCGTTCCCAGGTCCAATAAGAGAAAGAATCTGA

Protein sequence

>MS.gene67679.t1

MFHWCVGALAFHAWFHSDDSIDSWFSKGTLVPLMGNCFGSRYKVHEPFSQPNSEVIKVPFRSTQLLVHSSAIVHGHNDGGKPEILPTPRSEGDILSSPHLKAFTFKDLRNATKNFSNDSLIGQGGFGYVYKGWIDAQSLKAARPGCGTVVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEYMPNGSLEKHLFSRKGTQLLPWATRIKVAIGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGVEHNLVDWARPYLGDRRKLFRIMDTRLQGQYPQRAAYTAAILALQCISEAKFRPQMSEVLTTLEHLPVIRHSASPSRFEEKPFPGPIRERI