AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67733

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67733.t1 MTR_2g038040 92.166 217 17 0 1 217 1 217 1.71e-149 416
MS.gene67733.t1 MTR_1g112680 32.489 237 129 7 6 213 258 492 1.45e-20 89.7
MS.gene67733.t1 MTR_8g064700 30.909 165 106 2 51 215 243 399 5.40e-20 87.8
MS.gene67733.t1 MTR_3g498695 32.749 171 108 4 48 216 294 459 1.49e-18 84.0
MS.gene67733.t1 MTR_3g030700 36.686 169 91 6 51 215 195 351 1.09e-17 80.9
MS.gene67733.t1 MTR_3g498695 33.540 161 100 4 48 206 294 449 1.45e-17 80.9
MS.gene67733.t1 MTR_2g084280 29.268 164 95 4 51 211 132 277 5.14e-17 78.6
MS.gene67733.t1 MTR_4g057270 31.098 164 96 3 51 211 148 297 7.31e-17 78.2
MS.gene67733.t1 MTR_7g117670 46.988 83 39 1 53 130 403 485 1.20e-15 75.5
MS.gene67733.t1 MTR_2g081040 33.537 164 90 6 51 206 176 328 1.30e-15 74.7
MS.gene67733.t1 MTR_7g083900 34.146 164 95 6 49 206 283 439 1.32e-15 75.5
MS.gene67733.t1 MTR_7g083900 34.146 164 95 6 49 206 283 439 1.34e-15 75.1
MS.gene67733.t1 MTR_4g091990 31.515 165 81 3 51 215 44 176 8.22e-15 70.5
MS.gene67733.t1 MTR_8g027495 55.932 59 26 0 53 111 459 517 9.53e-15 72.8
MS.gene67733.t1 MTR_8g067280 30.952 168 78 5 53 202 463 610 2.97e-14 71.6
MS.gene67733.t1 MTR_7g096350 56.364 55 24 0 53 107 356 410 4.45e-14 70.9
MS.gene67733.t1 MTR_5g030430 30.719 153 98 4 53 202 494 641 4.48e-14 70.9
MS.gene67733.t1 MTR_2g104560 23.636 220 129 5 12 214 4 201 6.64e-14 68.6
MS.gene67733.t1 MTR_3g104100 31.902 163 92 6 51 205 194 345 1.52e-13 68.9
MS.gene67733.t1 MTR_8g024790 60.000 45 18 0 53 97 292 336 4.16e-13 68.2
MS.gene67733.t1 MTR_8g024770 60.000 45 18 0 53 97 280 324 6.00e-13 67.4
MS.gene67733.t1 MTR_4g092700 28.049 164 101 4 53 214 159 307 1.23e-12 66.2
MS.gene67733.t1 MTR_4g091910 28.916 166 100 2 50 215 45 192 2.46e-12 63.9
MS.gene67733.t1 MTR_2g010450 28.221 163 103 2 53 214 178 327 5.05e-12 64.7
MS.gene67733.t1 MTR_1g072320 50.909 55 27 0 43 97 461 515 1.29e-11 63.9
MS.gene67733.t1 MTR_8g069740 25.926 189 126 6 21 208 83 258 2.49e-11 62.0
MS.gene67733.t1 MTR_5g030770 34.810 158 81 4 48 205 152 287 2.90e-11 62.4
MS.gene67733.t1 MTR_5g014600 26.943 193 112 7 37 218 136 310 3.97e-11 62.0
MS.gene67733.t1 MTR_5g014520 39.189 74 42 1 37 107 139 212 5.57e-11 61.6
MS.gene67733.t1 MTR_3g111290 54.412 68 30 1 48 115 169 235 6.04e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67733.t1 AT5G57150 62.780 223 74 6 1 219 1 218 5.38e-84 249
MS.gene67733.t1 AT5G57150 63.063 222 73 6 1 218 1 217 1.36e-83 248
MS.gene67733.t1 AT5G57150 63.514 222 73 6 1 219 1 217 1.57e-83 248
MS.gene67733.t1 AT5G57150 63.927 219 71 6 1 216 1 214 2.31e-83 248
MS.gene67733.t1 AT5G57150 63.014 219 72 6 1 215 1 214 9.90e-81 242
MS.gene67733.t1 AT4G29930 53.304 227 92 3 1 215 1 225 1.19e-76 231
MS.gene67733.t1 AT4G29930 53.304 227 92 3 1 215 1 225 1.77e-76 231
MS.gene67733.t1 AT4G29930 53.304 227 92 3 1 215 1 225 1.77e-76 231
MS.gene67733.t1 AT4G29930 53.456 217 81 3 1 215 1 199 1.54e-74 225
MS.gene67733.t1 AT4G29930 52.995 217 79 3 1 215 1 196 1.21e-73 223
MS.gene67733.t1 AT4G29930 52.511 219 81 3 1 217 1 198 2.42e-73 222
MS.gene67733.t1 AT4G29930 52.571 175 69 3 1 163 1 173 1.59e-51 165
MS.gene67733.t1 AT2G28160 31.646 158 92 4 51 205 130 274 1.26e-17 80.1
MS.gene67733.t1 AT2G28160 31.646 158 92 4 51 205 130 274 1.50e-17 80.1
MS.gene67733.t1 AT2G16910 30.168 179 101 5 51 213 313 483 3.51e-17 80.1
MS.gene67733.t1 AT1G01260 29.167 192 101 4 24 215 405 561 5.99e-17 79.3
MS.gene67733.t1 AT1G01260 29.167 192 101 4 24 215 405 561 5.99e-17 79.3
MS.gene67733.t1 AT1G01260 29.167 192 101 4 24 215 405 561 5.99e-17 79.3
MS.gene67733.t1 AT3G26744 34.568 162 95 5 49 206 304 458 7.99e-17 79.0
MS.gene67733.t1 AT3G26744 34.568 162 95 5 49 206 304 458 7.99e-17 79.0
MS.gene67733.t1 AT3G26744 34.568 162 95 5 49 206 304 458 7.99e-17 79.0
MS.gene67733.t1 AT3G26744 34.568 162 95 5 49 206 304 458 8.98e-17 78.6
MS.gene67733.t1 AT5G46760 33.987 153 86 6 53 202 416 556 3.11e-16 77.4
MS.gene67733.t1 AT2G46510 61.818 55 21 0 53 107 396 450 3.59e-16 77.0
MS.gene67733.t1 AT1G12860 34.783 161 92 6 49 206 264 414 1.40e-15 75.1
MS.gene67733.t1 AT1G12860 34.783 161 92 6 49 206 264 414 1.59e-15 75.1
MS.gene67733.t1 AT4G17880 31.481 162 74 5 53 202 417 553 2.83e-15 74.3
MS.gene67733.t1 AT1G32640 32.000 150 90 4 53 202 453 590 3.20e-15 74.3
MS.gene67733.t1 AT4G16430 46.053 76 40 1 53 127 321 396 4.64e-15 73.9
MS.gene67733.t1 AT1G63650 29.697 165 105 4 56 212 409 570 1.46e-12 66.6
MS.gene67733.t1 AT1G63650 29.697 165 105 4 56 212 409 570 1.46e-12 66.6
MS.gene67733.t1 AT1G63650 29.697 165 105 4 56 212 409 570 1.46e-12 66.6
MS.gene67733.t1 AT5G46830 48.333 60 31 0 53 112 344 403 1.57e-12 66.2
MS.gene67733.t1 AT4G21330 30.818 159 100 4 51 209 31 179 2.79e-12 63.9
MS.gene67733.t1 AT4G00870 45.000 60 33 0 53 112 250 309 3.53e-12 65.1
MS.gene67733.t1 AT4G37850 29.878 164 96 5 53 212 153 301 1.64e-11 63.2
MS.gene67733.t1 AT4G37850 29.878 164 96 5 53 212 153 301 1.64e-11 63.2
MS.gene67733.t1 AT2G22770 25.882 170 96 3 56 209 136 291 4.12e-11 61.6
MS.gene67733.t1 AT1G10610 26.974 152 102 2 51 202 263 405 6.60e-11 61.6
MS.gene67733.t1 AT1G10610 26.974 152 102 2 51 202 233 375 8.35e-11 61.2

Find 40 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCTGTTCTCTTCTTCT+TGG 0.200519 2.3:-50909683 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.3:+50909522 MS.gene67733:CDS
ACCTATCAAGCTCTTGGGTT+TGG 0.289916 2.3:-50908823 None:intergenic
GTGATGAGTACAAGCTTTAC+TGG 0.315934 2.3:+50908783 MS.gene67733:CDS
GAGATAATGAAACTTGAATC+TGG 0.334828 2.3:+50909598 MS.gene67733:CDS
TAGTTTGGATTAATACTATT+AGG 0.334901 2.3:-50909625 None:intergenic
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.3:-50909103 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.3:-50909102 None:intergenic
TCTTGATCAAAATCATAGTT+TGG 0.369624 2.3:-50909640 None:intergenic
TTTACCTCAAGAACTTCAAT+TGG 0.370892 2.3:-50909736 None:intergenic
CCTGATGATGCTGCACCATC+GGG 0.391505 2.3:-50908998 None:intergenic
TTGTGGTTGCAGCTGGGGAT+TGG 0.412240 2.3:+50908940 MS.gene67733:intron
TCCTGATGATGCTGCACCAT+CGG 0.430185 2.3:-50908999 None:intergenic
TCCAAACCCAAGAGCTTGAT+AGG 0.430262 2.3:+50908822 MS.gene67733:CDS
CCCGATGGTGCAGCATCATC+AGG 0.443280 2.3:+50908998 MS.gene67733:CDS
TATCAAGCTCTTGGGTTTGG+AGG 0.453409 2.3:-50908820 None:intergenic
TGAGCTTGACATGTAACAAA+AGG 0.468788 2.3:+50910331 MS.gene67733:CDS
GCAGCTTAGGGTTACATACA+TGG 0.504078 2.3:+50910290 MS.gene67733:intron
CTTTCCAATTGAAGTTCTTG+AGG 0.510871 2.3:+50909732 MS.gene67733:CDS
ACATTGACTCTGAGAGGAAG+AGG 0.514432 2.3:+50909035 MS.gene67733:CDS
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.3:+50909659 MS.gene67733:CDS
TTGGGTTTGGAGGAACATGT+TGG 0.533281 2.3:-50908810 None:intergenic
GAGCTTGACATGTAACAAAA+GGG 0.547151 2.3:+50910332 MS.gene67733:CDS
ATAAAGCACTTGCATGAACA+AGG 0.548725 2.3:+50909559 MS.gene67733:CDS
AGATAATGAAACTTGAATCT+GGG 0.558096 2.3:+50909599 MS.gene67733:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.3:-50909667 None:intergenic
CTCATCACCAATGTTCTCCA+TGG 0.572679 2.3:-50908768 None:intergenic
TGATGATGCTGCACCATCGG+GGG 0.580991 2.3:-50908996 None:intergenic
TGATGAGTACAAGCTTTACT+GGG 0.584970 2.3:+50908784 MS.gene67733:CDS
TTTGAAGACAGTCTTCATTG+AGG 0.586246 2.3:+50910443 MS.gene67733:CDS
TTAACAACCATGGAGAACAT+TGG 0.592898 2.3:+50908761 None:intergenic
CTAAGAACATTGACTCTGAG+AGG 0.615826 2.3:+50909029 MS.gene67733:CDS
TTGACTCTGAGAGGAAGAGG+AGG 0.620990 2.3:+50909038 MS.gene67733:CDS
TAACAAAAGGGCAGACACAA+TGG 0.621554 2.3:+50910344 MS.gene67733:CDS
ACTCTTTGCACTTAGAGCAG+TGG 0.626022 2.3:+50909078 MS.gene67733:CDS
CAGCTTAGGGTTACATACAT+GGG 0.636587 2.3:+50910291 MS.gene67733:intron
CTGATGATGCTGCACCATCG+GGG 0.660135 2.3:-50908997 None:intergenic
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.3:+50909096 MS.gene67733:CDS
TAAAGCACTTGCATGAACAA+GGG 0.671614 2.3:+50909560 MS.gene67733:CDS
ATACATGGGAGAGAATACAA+TGG 0.777577 2.3:+50910305 MS.gene67733:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATAATTAAATAA+TGG - chr2.3:50909145-50909164 None:intergenic 0.0%
!! CAACTTAAAAAAAAAAAAAT+AGG + chr2.3:50909872-50909891 MS.gene67733:intron 10.0%
!! TCCAATTTAAAAAAAAAAAA+AGG + chr2.3:50909845-50909864 MS.gene67733:intron 10.0%
!!! CTATTTTTTTTTTTTTAAGT+TGG - chr2.3:50909874-50909893 None:intergenic 10.0%
!!! TCCTTTTTTTTTTTTTAAAT+TGG - chr2.3:50909849-50909868 None:intergenic 10.0%
!!! GTAATATATTTTCTCTATTA+GGG - chr2.3:50910040-50910059 None:intergenic 15.0%
!!! TTGTTGTTTTATATTATTTG+AGG - chr2.3:50910613-50910632 None:intergenic 15.0%
!! AACTTCAAAAAAATAGATAG+TGG + chr2.3:50909939-50909958 MS.gene67733:intron 20.0%
!! AATTTCTTTCTAATTATGAG+TGG + chr2.3:50909476-50909495 MS.gene67733:intron 20.0%
!! ACTGGAATTTAGATAAATTT+AGG + chr2.3:50910747-50910766 MS.gene67733:intron 20.0%
!! ACTTCAAAAAAATAGATAGT+GGG + chr2.3:50909940-50909959 MS.gene67733:intron 20.0%
!! ACTTGTAATAGAAAAATGTT+TGG - chr2.3:50910668-50910687 None:intergenic 20.0%
!! AGAAAGTGAAATGAAATTAA+AGG - chr2.3:50910480-50910499 None:intergenic 20.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.3:50910186-50910205 MS.gene67733:intron 20.0%
!! CTACTATCTTCATAAAATAT+AGG + chr2.3:50909242-50909261 MS.gene67733:intron 20.0%
!! CTGGAATTTAGATAAATTTA+GGG + chr2.3:50910748-50910767 MS.gene67733:intron 20.0%
!! GAAATAATTAAACCATATGA+TGG - chr2.3:50909435-50909454 None:intergenic 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.3:50910185-50910204 MS.gene67733:intron 20.0%
!! GTTAGCAAAAAAAATAATAG+TGG - chr2.3:50910098-50910117 None:intergenic 20.0%
!! TACAACATGAATATTAAAAC+TGG + chr2.3:50910729-50910748 MS.gene67733:intron 20.0%
!! TAGTTTGGATTAATACTATT+AGG - chr2.3:50909628-50909647 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.3:50910184-50910203 MS.gene67733:intron 20.0%
!! TTGAATCAAAGTGAATTAAA+TGG - chr2.3:50908856-50908875 None:intergenic 20.0%
!!! ATTAGTACTACTCAATTTTT+TGG + chr2.3:50909162-50909181 MS.gene67733:intron 20.0%
!!! GGTAATATATTTTCTCTATT+AGG - chr2.3:50910041-50910060 None:intergenic 20.0%
!!! TATGCTTTTAATTTTTGTGT+TGG - chr2.3:50910700-50910719 None:intergenic 20.0%
!!! TCTTTAATCTATTTGTTGTT+GGG - chr2.3:50910129-50910148 None:intergenic 20.0%
!!! TTAGTACTACTCAATTTTTT+GGG + chr2.3:50909163-50909182 MS.gene67733:intron 20.0%
!!! TTCTTTAATCTATTTGTTGT+TGG - chr2.3:50910130-50910149 None:intergenic 20.0%
!!! TTGTTTGAATTAAGTGTTTT+GGG + chr2.3:50909213-50909232 MS.gene67733:intron 20.0%
!!! TTTGTTTGAATTAAGTGTTT+TGG + chr2.3:50909212-50909231 MS.gene67733:intron 20.0%
! AAATTTAGGGAGATATATCA+AGG + chr2.3:50910761-50910780 MS.gene67733:intron 25.0%
! ACCTACAAAGCAAATTAAAT+AGG - chr2.3:50910562-50910581 None:intergenic 25.0%
! AGATAATGAAACTTGAATCT+GGG + chr2.3:50909599-50909618 MS.gene67733:CDS 25.0%
! AGATTAAAGAAGAGATTGTA+AGG + chr2.3:50910139-50910158 MS.gene67733:intron 25.0%
! ATCATGGTAATTGAGATATA+TGG + chr2.3:50908917-50908936 MS.gene67733:intron 25.0%
! GAAAACTATTAACCATCATA+TGG + chr2.3:50909420-50909439 MS.gene67733:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.3:50909522-50909541 MS.gene67733:CDS 25.0%
! GGTACAAAAGTAAATGAATT+TGG + chr2.3:50909263-50909282 MS.gene67733:intron 25.0%
! TACAACTCTTTGATATCTAT+TGG + chr2.3:50909398-50909417 MS.gene67733:intron 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.3:50909989-50910008 MS.gene67733:intron 25.0%
! TCTTGATCAAAATCATAGTT+TGG - chr2.3:50909643-50909662 None:intergenic 25.0%
! TGAGTGTGTAATTTGATATA+TGG + chr2.3:50910261-50910280 MS.gene67733:intron 25.0%
! TGTTTGGCTAAAATATCATT+TGG - chr2.3:50910652-50910671 None:intergenic 25.0%
! TTAAGGTGGTGATTTATATT+TGG - chr2.3:50909987-50910006 None:intergenic 25.0%
!! TATATCAAGGTGTATTCTTT+TGG + chr2.3:50910774-50910793 MS.gene67733:intron 25.0%
!!! CTTTAATCTATTTGTTGTTG+GGG - chr2.3:50910128-50910147 None:intergenic 25.0%
!!! TCCTATTTAATTTGCTTTGT+AGG + chr2.3:50910558-50910577 MS.gene67733:intron 25.0%
!!! TGTATTGTTTTGCTTACAAA+CGG + chr2.3:50909309-50909328 MS.gene67733:intron 25.0%
!!! TTTAATCTATTTGTTGTTGG+GGG - chr2.3:50910127-50910146 None:intergenic 25.0%
!!! TTTATATTTGGTTCTAAGCA+TGG - chr2.3:50909975-50909994 None:intergenic 25.0%
ACTAATATTATGTGACACAG+TGG + chr2.3:50909336-50909355 MS.gene67733:intron 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.3:50909106-50909125 None:intergenic 30.0%
CTAATATTATGTGACACAGT+GGG + chr2.3:50909337-50909356 MS.gene67733:intron 30.0%
GAGATAATGAAACTTGAATC+TGG + chr2.3:50909598-50909617 MS.gene67733:CDS 30.0%
GTAATTGAGATATATGGTTG+TGG + chr2.3:50908923-50908942 MS.gene67733:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.3:50908862-50908881 MS.gene67733:intron 30.0%
TGGTATTTGATAGGTTGTAA+TGG - chr2.3:50910062-50910081 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.3:50909105-50909124 None:intergenic 30.0%
TTGAAGTTCTTGAGGTAAAT+TGG + chr2.3:50909740-50909759 MS.gene67733:intron 30.0%
TTTACCTCAAGAACTTCAAT+TGG - chr2.3:50909739-50909758 None:intergenic 30.0%
TTTGAGGAAGAAGAAAATGA+AGG - chr2.3:50910597-50910616 None:intergenic 30.0%
! ATTTTTACCTATCAAGCTCT+TGG - chr2.3:50908832-50908851 None:intergenic 30.0%
! TTTTTACCTATCAAGCTCTT+GGG - chr2.3:50908831-50908850 None:intergenic 30.0%
!! AGTCTGATTTGGTATTTGAT+AGG - chr2.3:50910071-50910090 None:intergenic 30.0%
!! ATAGTGGATAAAGTCTGATT+TGG - chr2.3:50910082-50910101 None:intergenic 30.0%
!!! GTGACTTTTTCTTTTTCAGA+TGG + chr2.3:50909501-50909520 MS.gene67733:intron 30.0%
AGGAAGAAGAAAATGAAGGT+TGG - chr2.3:50910593-50910612 None:intergenic 35.0%
ATACATGGGAGAGAATACAA+TGG + chr2.3:50910305-50910324 MS.gene67733:CDS 35.0%
CTTTCCAATTGAAGTTCTTG+AGG + chr2.3:50909732-50909751 MS.gene67733:CDS 35.0%
GAGCTTGACATGTAACAAAA+GGG + chr2.3:50910332-50910351 MS.gene67733:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.3:50910170-50910189 None:intergenic 35.0%
TGAGCTTGACATGTAACAAA+AGG + chr2.3:50910331-50910350 MS.gene67733:CDS 35.0%
TGATGAGTACAAGCTTTACT+GGG + chr2.3:50908784-50908803 MS.gene67733:CDS 35.0%
TTTGAAGACAGTCTTCATTG+AGG + chr2.3:50910443-50910462 MS.gene67733:CDS 35.0%
! ATAAAGCACTTGCATGAACA+AGG + chr2.3:50909559-50909578 MS.gene67733:CDS 35.0%
! TAAAGCACTTGCATGAACAA+GGG + chr2.3:50909560-50909579 MS.gene67733:CDS 35.0%
!! ATTTTCTCTATTAGGGTACC+TGG - chr2.3:50910033-50910052 None:intergenic 35.0%
AAAGACGATGATAGAGAGAG+TGG - chr2.3:50909767-50909786 None:intergenic 40.0%
AAGACGATGATAGAGAGAGT+GGG - chr2.3:50909766-50909785 None:intergenic 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.3:50910278-50910297 MS.gene67733:intron 40.0%
CAGCTTAGGGTTACATACAT+GGG + chr2.3:50910291-50910310 MS.gene67733:intron 40.0%
CTGATCTGTTCTCTTCTTCT+TGG - chr2.3:50909686-50909705 None:intergenic 40.0%
GTGATGAGTACAAGCTTTAC+TGG + chr2.3:50908783-50908802 MS.gene67733:CDS 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.3:50910344-50910363 MS.gene67733:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.3:50910277-50910296 MS.gene67733:intron 40.0%
TATTATGTGACACAGTGGGT+AGG + chr2.3:50909341-50909360 MS.gene67733:intron 40.0%
!! AATGGTAGGCCTTATTAAGG+TGG - chr2.3:50910001-50910020 None:intergenic 40.0%
!! ATCTATTTGTTGTTGGGGGT+TGG - chr2.3:50910123-50910142 None:intergenic 40.0%
!! CTAAGAACATTGACTCTGAG+AGG + chr2.3:50909029-50909048 MS.gene67733:CDS 40.0%
!! GGATTGGATGAAGCTTTTTC+AGG + chr2.3:50908956-50908975 MS.gene67733:CDS 40.0%
ACCTATCAAGCTCTTGGGTT+TGG - chr2.3:50908826-50908845 None:intergenic 45.0%
ACTCTTTGCACTTAGAGCAG+TGG + chr2.3:50909078-50909097 MS.gene67733:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.3:50909096-50909115 MS.gene67733:CDS 45.0%
ATATGGTTGTGGTTGCAGCT+GGG + chr2.3:50908934-50908953 MS.gene67733:intron 45.0%
CAAAAGCCTGCCTGAAAAAG+AGG - chr2.3:50910427-50910446 None:intergenic 45.0%
GCAGCTTAGGGTTACATACA+TGG + chr2.3:50910290-50910309 MS.gene67733:intron 45.0%
GCCTGAAAAAGAGGTGATGT+TGG - chr2.3:50910418-50910437 None:intergenic 45.0%
TATATGGTTGTGGTTGCAGC+TGG + chr2.3:50908933-50908952 MS.gene67733:intron 45.0%
TATCAAGCTCTTGGGTTTGG+AGG - chr2.3:50908823-50908842 None:intergenic 45.0%
TCCAAACCCAAGAGCTTGAT+AGG + chr2.3:50908822-50908841 MS.gene67733:CDS 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.3:50909670-50909689 None:intergenic 45.0%
TTGGGTTTGGAGGAACATGT+TGG - chr2.3:50908813-50908832 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.3:50909659-50909678 MS.gene67733:CDS 45.0%
! GCCAACATCACCTCTTTTTC+AGG + chr2.3:50910414-50910433 MS.gene67733:CDS 45.0%
! TTCTCTATTAGGGTACCTGG+TGG - chr2.3:50910030-50910049 None:intergenic 45.0%
!! ACATTGACTCTGAGAGGAAG+AGG + chr2.3:50909035-50909054 MS.gene67733:CDS 45.0%
!! GGCAATGGTAGGCCTTATTA+AGG - chr2.3:50910004-50910023 None:intergenic 45.0%
!!! ACATCACCTCTTTTTCAGGC+AGG + chr2.3:50910418-50910437 MS.gene67733:CDS 45.0%
!! TAATTAATTATAATTAATCA+TGG + chr2.3:50908901-50908920 MS.gene67733:intron 5.0%
!!! AATATATATTTTTAATAAAG+AGG - chr2.3:50910536-50910555 None:intergenic 5.0%
TATGATTCAAGCTCCCCCGA+TGG + chr2.3:50908983-50909002 MS.gene67733:CDS 50.0%
TATGGTTGTGGTTGCAGCTG+GGG + chr2.3:50908935-50908954 MS.gene67733:intron 50.0%
! TATTAGGGTACCTGGTGGTG+TGG - chr2.3:50910025-50910044 None:intergenic 50.0%
! TCCTGATGATGCTGCACCAT+CGG - chr2.3:50909002-50909021 None:intergenic 50.0%
! TTGACTCTGAGAGGAAGAGG+AGG + chr2.3:50909038-50909057 MS.gene67733:CDS 50.0%
TTGTGGTTGCAGCTGGGGAT+TGG + chr2.3:50908940-50908959 MS.gene67733:intron 55.0%
! CCTGATGATGCTGCACCATC+GGG - chr2.3:50909001-50909020 None:intergenic 55.0%
! CTGATGATGCTGCACCATCG+GGG - chr2.3:50909000-50909019 None:intergenic 55.0%
! TGATGATGCTGCACCATCGG+GGG - chr2.3:50908999-50909018 None:intergenic 55.0%
CCCGATGGTGCAGCATCATC+AGG + chr2.3:50908998-50909017 MS.gene67733:CDS 60.0%
CCTACCATTGCCACACCACC+AGG + chr2.3:50910012-50910031 MS.gene67733:intron 60.0%
! CCTGGTGGTGTGGCAATGGT+AGG - chr2.3:50910015-50910034 None:intergenic 60.0%
! GGTACCTGGTGGTGTGGCAA+TGG - chr2.3:50910019-50910038 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 50908770 50910822 50908770 ID=MS.gene67733
chr2.3 mRNA 50908770 50910822 50908770 ID=MS.gene67733.t1;Parent=MS.gene67733
chr2.3 exon 50908770 50908843 50908770 ID=MS.gene67733.t1.exon1;Parent=MS.gene67733.t1
chr2.3 CDS 50908770 50908843 50908770 ID=cds.MS.gene67733.t1;Parent=MS.gene67733.t1
chr2.3 exon 50908952 50909117 50908952 ID=MS.gene67733.t1.exon2;Parent=MS.gene67733.t1
chr2.3 CDS 50908952 50909117 50908952 ID=cds.MS.gene67733.t1;Parent=MS.gene67733.t1
chr2.3 exon 50909520 50909753 50909520 ID=MS.gene67733.t1.exon3;Parent=MS.gene67733.t1
chr2.3 CDS 50909520 50909753 50909520 ID=cds.MS.gene67733.t1;Parent=MS.gene67733.t1
chr2.3 exon 50910294 50910464 50910294 ID=MS.gene67733.t1.exon4;Parent=MS.gene67733.t1
chr2.3 CDS 50910294 50910464 50910294 ID=cds.MS.gene67733.t1;Parent=MS.gene67733.t1
chr2.3 exon 50910802 50910822 50910802 ID=MS.gene67733.t1.exon5;Parent=MS.gene67733.t1
chr2.3 CDS 50910802 50910822 50910802 ID=cds.MS.gene67733.t1;Parent=MS.gene67733.t1
Gene Sequence

>MS.gene67733

ATGGAGAACATTGGTGATGAGTACAAGCTTTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGGTAAAAATACCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTTAATTAATTATAATTAATCATGGTAATTGAGATATATGGTTGTGGTTGCAGCTGGGGATTGGATGAAGCTTTTTCAGGATATTATGATTCAAGCTCCCCCGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGACTCTGAGAGGAAGAGGAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTAGTCCATTATTTAATTATTAATAATTAGTACTACTCAATTTTTTGGGTGCAATTTTGCTATTGATTTTTTTGTTTTGTTTGAATTAAGTGTTTTGGGTGAAAACTACTATCTTCATAAAATATAGGTACAAAAGTAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTGTTTTGCTTACAAACGGAGTAACTAATATTATGTGACACAGTGGGTAGGTAATTTAATTTTTTAAACATGTTGTTAGAGTACATACAACTCTTTGATATCTATTGGAAAACTATTAACCATCATATGGTTTAATTATTTCGAATGATTAGTCTATGACGTCAATTTCTTTCTAATTATGAGTGGTAGTGACTTTTTCTTTTTCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATAAAGCACTTGCATGAACAAGGGAAGATTATTCAAGCTGAGATAATGAAACTTGAATCTGGGATGCCTAATAGTATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCACTTCAAGAAACTTTCCAATTGAAGTTCTTGAGGTAAATTGGCCCACTCTCTCTATCATCGTCTTTTTCTCTTTCATGAAATTTTTTAAGAATCAAAATGAATGAATATATTAAGAAACATTATTCCAATTTAAAAAAAAAAAAAGGAAACCAACTTAAAAAAAAAAAAATAGGAAATAGATAAATTATTATCAAATTGTCATTATCACTGAGCTCACAACTTCAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTAGAACCAAATATAAATCACCACCTTAATAAGGCCTACCATTGCCACACCACCAGGTACCCTAATAGAGAAAATATATTACCATTACAACCTATCAAATACCAAATCAGACTTTATCCACTATTATTTTTTTTGCTAACAACCAACCCCCAACAACAAATAGATTAAAGAAGAGATTGTAAGGCATAACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGATTATAATTTTATAATTATCTTTGAATTTCTAAAGCAATTAATTATGAGTGTGTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATGTAACAAAAGGGCAGACACAATGGTGAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTTAAAATTATTACTGCCAACATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGTTACTTTTTATCCTTTAATTTCATTTCACTTTCTTTATTTTATAATAAATATATGATGATAGTTCATCCTCTTTATTAAAAATATATATTATTCCTATTTAATTTGCTTTGTAGGTAGAGTAGACCAACCTTCATTTTCTTCTTCCTCAAATAATATAAAACAACAAAATTTAAATGTTATAACCAAATGATATTTTAGCCAAACATTTTTCTATTACAAGTTTTTTCTTACCAACACAAAAATTAAAAGCATATATTATATATACAACATGAATATTAAAACTGGAATTTAGATAAATTTAGGGAGATATATCAAGGTGTATTCTTTTGGTGCAGTGCTCTATAGCTTCAAAATAG
Protein sequence

>MS.gene67733.t1

MENIGDEYKLYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIDSERKRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIKHLHEQGKIIQAEIMKLESGMPNSINPNYDFDQELPVLLRSKKKRTDQLYDSVTSRNFPIEVLELRVTYMGENTMVVSLTCNKRADTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIECSIASK