Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67793.t1 | PNX89523.1 | 41.1 | 95 | 55 | 1 | 7 | 101 | 2 | 95 | 4.80E-08 | 68.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67793.t1 | A0A2K3MFE8 | 41.1 | 95 | 55 | 1 | 7 | 101 | 2 | 95 | 3.4e-08 | 68.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67793.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAACGTGGCTAATTTC+TGG | 0.218063 | 3.3:-2656712 | MS.gene67793:CDS |
| AGAGCATAGAGTTTGGTTTC+AGG | 0.263168 | 3.3:-2657302 | MS.gene67793:CDS |
| GGCGGTGGTTGCTTCTATTC+AGG | 0.264711 | 3.3:-2657235 | MS.gene67793:CDS |
| TGTTCTTCCACCACTGGTAC+TGG | 0.276664 | 3.3:+2656767 | None:intergenic |
| AATTAGCCACGTTCTGAATC+TGG | 0.296437 | 3.3:+2656717 | None:intergenic |
| GAGGAACCTGCTTTCGATAT+TGG | 0.318864 | 3.3:-2656680 | MS.gene67793:CDS |
| GAGTTGTGCGCATCATTAAT+TGG | 0.323647 | 3.3:+2656833 | None:intergenic |
| AAATTTGCTCGGCGAGCATT+TGG | 0.329497 | 3.3:-2656399 | MS.gene67793:CDS |
| TGATAATGAGGAGGCTGATA+TGG | 0.331856 | 3.3:-2656657 | MS.gene67793:CDS |
| GTCAAATAGAGCATAGAGTT+TGG | 0.371033 | 3.3:-2657309 | MS.gene67793:CDS |
| TTAAAACATGTGTCTCCAAC+TGG | 0.380379 | 3.3:+2656588 | None:intergenic |
| TTAGAGCACCATACCTGGTT+TGG | 0.383982 | 3.3:+2658227 | None:intergenic |
| CGATGTTGAATACCCTCCTT+TGG | 0.387542 | 3.3:+2658258 | None:intergenic |
| GATCATTATGAGCAACCATT+AGG | 0.389483 | 3.3:-2657196 | MS.gene67793:CDS |
| TAGAGCACCATACCTGGTTT+GGG | 0.392335 | 3.3:+2658228 | None:intergenic |
| CATTCCTGATGATGGTGATA+TGG | 0.395267 | 3.3:-2656804 | MS.gene67793:CDS |
| GCACGTGAGGCAGGTCGTTA+TGG | 0.400336 | 3.3:-2656178 | MS.gene67793:CDS |
| AATACCGATGTAGCTTTATC+CGG | 0.408209 | 3.3:+2656297 | None:intergenic |
| TCAGAACGTGGCTAATTTCT+GGG | 0.416922 | 3.3:-2656711 | MS.gene67793:CDS |
| GCTACTGCAGCGGCAGTTTG+TGG | 0.430209 | 3.3:+2656740 | None:intergenic |
| AATCGTAGGTTTAGACCTAA+TGG | 0.433227 | 3.3:+2657181 | None:intergenic |
| AAACATCCCGTTATCGTCAT+AGG | 0.435778 | 3.3:+2657156 | None:intergenic |
| AATTTGCTCGGCGAGCATTT+GGG | 0.441935 | 3.3:-2656398 | MS.gene67793:CDS |
| CATCATTAATTGGATTTGAC+GGG | 0.443530 | 3.3:+2656843 | None:intergenic |
| GCCTCACGTGCAGGACAGTT+GGG | 0.444919 | 3.3:+2656190 | None:intergenic |
| TCATTCCACTTAATATCGAT+TGG | 0.456651 | 3.3:+2656324 | None:intergenic |
| CGTTAGAGAGAACAGATTTG+TGG | 0.458615 | 3.3:-2656250 | MS.gene67793:CDS |
| TCCACCACTGGTACTGGGTC+AGG | 0.460719 | 3.3:+2656773 | None:intergenic |
| GTTCCACCGGGTTTCGAAGT+AGG | 0.463343 | 3.3:-2656869 | MS.gene67793:CDS |
| TCTAGGTTTGGTATATGTTA+CGG | 0.463956 | 3.3:-2657268 | MS.gene67793:CDS |
| GTTCTTCCACCACTGGTACT+GGG | 0.464509 | 3.3:+2656768 | None:intergenic |
| GATTGACCTATGACGATAAC+GGG | 0.465542 | 3.3:-2657162 | MS.gene67793:CDS |
| GCATCATTAATTGGATTTGA+CGG | 0.475292 | 3.3:+2656842 | None:intergenic |
| TGCCTCACGTGCAGGACAGT+TGG | 0.476556 | 3.3:+2656189 | None:intergenic |
| AGTATCCAATCGATATTAAG+TGG | 0.481943 | 3.3:-2656329 | MS.gene67793:CDS |
| TCATCCATGTCAAGAGTGAA+TGG | 0.486104 | 3.3:+2657124 | None:intergenic |
| CTCATCTCGGATCGTGATGA+AGG | 0.492063 | 3.3:+2656362 | None:intergenic |
| GGCTGATATGGATGTCGAAA+TGG | 0.496866 | 3.3:-2656645 | MS.gene67793:CDS |
| TCTCCTCCCATTCCTGATGA+TGG | 0.497542 | 3.3:-2656812 | MS.gene67793:CDS |
| CGATTGACCTATGACGATAA+CGG | 0.500068 | 3.3:-2657163 | MS.gene67793:CDS |
| AACTGTCCTGCACGTGAGGC+AGG | 0.503776 | 3.3:-2656187 | MS.gene67793:CDS |
| GATACCAGAGGGTCTAGGTT+TGG | 0.507562 | 3.3:-2657280 | MS.gene67793:CDS |
| TTTATTTCCAGCAGTTCCAC+CGG | 0.508663 | 3.3:-2656882 | MS.gene67793:intron |
| TTCAGGATACCAGAGGGTCT+AGG | 0.513988 | 3.3:-2657285 | MS.gene67793:CDS |
| ATTAGCCACGTTCTGAATCT+GGG | 0.515846 | 3.3:+2656718 | None:intergenic |
| CATATCACCATCATCAGGAA+TGG | 0.516230 | 3.3:+2656805 | None:intergenic |
| TTTCGATATTGGTGATAATG+AGG | 0.526872 | 3.3:-2656669 | MS.gene67793:CDS |
| TTTAACGCTTGCTGCGTACA+TGG | 0.531915 | 3.3:-2656570 | MS.gene67793:CDS |
| AGCTTACGGCTCGTGTCCCA+TGG | 0.534486 | 3.3:-2657354 | MS.gene67793:CDS |
| TAACGACCTGCCTCACGTGC+AGG | 0.537930 | 3.3:+2656181 | None:intergenic |
| ACTACCATATCACCATCATC+AGG | 0.542080 | 3.3:+2656800 | None:intergenic |
| TCTCGGATCGTGATGAAGGT+TGG | 0.548455 | 3.3:+2656366 | None:intergenic |
| TAAAACATGTGTCTCCAACT+GGG | 0.552768 | 3.3:+2656589 | None:intergenic |
| ATATCACCATCATCAGGAAT+GGG | 0.554219 | 3.3:+2656806 | None:intergenic |
| TATACCAAACCTAGACCCTC+TGG | 0.555484 | 3.3:+2657276 | None:intergenic |
| TTGTACCAGCAAAATTTGCT+CGG | 0.557897 | 3.3:-2656410 | MS.gene67793:CDS |
| GGCAGGTCGTTATGGTGTAA+AGG | 0.566786 | 3.3:-2656170 | None:intergenic |
| ATTCACTCTTGACATGGATG+AGG | 0.568212 | 3.3:-2657122 | MS.gene67793:CDS |
| GCTTCCATTCACTCTTGACA+TGG | 0.570881 | 3.3:-2657128 | MS.gene67793:CDS |
| ATATGTTACGGAGAGATCAA+TGG | 0.580224 | 3.3:-2657256 | MS.gene67793:CDS |
| ACAGATTTGTGGAAGGCACA+AGG | 0.581028 | 3.3:-2656239 | MS.gene67793:CDS |
| TGACATGCAACCTTGAGCTA+TGG | 0.582304 | 3.3:+2657071 | None:intergenic |
| GTTGCTCATAATGATCAAGC+AGG | 0.585077 | 3.3:+2657203 | None:intergenic |
| TTATCACCAATATCGAAAGC+AGG | 0.592587 | 3.3:+2656674 | None:intergenic |
| TTATTTCCAGCAGTTCCACC+GGG | 0.594229 | 3.3:-2656881 | MS.gene67793:intron |
| ACCCAACTGTCCTGCACGTG+AGG | 0.595873 | 3.3:-2656191 | MS.gene67793:CDS |
| CCACCGGGTTTCGAAGTAGG+AGG | 0.598715 | 3.3:-2656866 | MS.gene67793:CDS |
| TGCACATGGCAATCCCCAGT+TGG | 0.598828 | 3.3:-2656603 | MS.gene67793:CDS |
| AAAACATGTGTCTCCAACTG+GGG | 0.599659 | 3.3:+2656590 | None:intergenic |
| AGGTAACTAATCGTCAATTG+AGG | 0.606077 | 3.3:-2657102 | MS.gene67793:CDS |
| CATCGCGGTCAACCCAAACC+AGG | 0.607211 | 3.3:-2658240 | MS.gene67793:intron |
| CGATATTGGTGATAATGAGG+AGG | 0.613156 | 3.3:-2656666 | MS.gene67793:CDS |
| TGTTCCTGACCCAGTACCAG+TGG | 0.613436 | 3.3:-2656777 | MS.gene67793:CDS |
| TACGGAGAGATCAATGGCGG+TGG | 0.619550 | 3.3:-2657250 | MS.gene67793:CDS |
| CAGATTTGTGGAAGGCACAA+GGG | 0.620094 | 3.3:-2656238 | MS.gene67793:CDS |
| CTGAATCTGGGCTACTGCAG+CGG | 0.621166 | 3.3:+2656730 | None:intergenic |
| TATCGTCATAGGTCAATCGT+AGG | 0.623984 | 3.3:+2657167 | None:intergenic |
| ACTCACGGTGGAACTCATCT+CGG | 0.624872 | 3.3:+2656349 | None:intergenic |
| TCCTGACCCAGTACCAGTGG+TGG | 0.629390 | 3.3:-2656774 | MS.gene67793:CDS |
| TAATATCGATTGGATACTCA+CGG | 0.630661 | 3.3:+2656334 | None:intergenic |
| AGAGAGAACAGATTTGTGGA+AGG | 0.635968 | 3.3:-2656246 | MS.gene67793:CDS |
| GTTTGGTTTCAGGATACCAG+AGG | 0.643279 | 3.3:-2657292 | MS.gene67793:CDS |
| TTTGGTTTCAGGATACCAGA+GGG | 0.645318 | 3.3:-2657291 | MS.gene67793:CDS |
| TCACCATCATCAGGAATGGG+AGG | 0.646579 | 3.3:+2656809 | None:intergenic |
| TAATTTCTGGGATGATGATG+AGG | 0.648095 | 3.3:-2656699 | MS.gene67793:CDS |
| GGAACTATGACCATAGCTCA+AGG | 0.651950 | 3.3:-2657081 | MS.gene67793:CDS |
| TATGGATGTCGAAATGGATG+TGG | 0.657183 | 3.3:-2656639 | MS.gene67793:CDS |
| AAAACCGGATAAAGCTACAT+CGG | 0.665649 | 3.3:-2656301 | MS.gene67793:CDS |
| GGGCCTCCTACTTCGAAACC+CGG | 0.671468 | 3.3:+2656863 | None:intergenic |
| CATGGTGAAATGCAGCAACA+TGG | 0.687154 | 3.3:-2656552 | MS.gene67793:intron |
| AATGGATGTGGTAGATGCTG+AGG | 0.688566 | 3.3:-2656627 | MS.gene67793:CDS |
| AGTAGCCCAGATTCAGAACG+TGG | 0.698194 | 3.3:-2656723 | MS.gene67793:CDS |
| CCTCCTACTTCGAAACCCGG+TGG | 0.702465 | 3.3:+2656866 | None:intergenic |
| GTAGATGCTGAGGATGCACA+TGG | 0.739903 | 3.3:-2656617 | MS.gene67793:CDS |
| TGTTACGGAGAGATCAATGG+CGG | 0.740697 | 3.3:-2657253 | MS.gene67793:CDS |
| AAGGAGGGTATTCAACATCG+CGG | 0.764822 | 3.3:-2658255 | MS.gene67793:CDS |
| TATCGATTGGATACTCACGG+TGG | 0.816467 | 3.3:+2656337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAGAAGAAAAAAAAA+CGG | + | chr3.3:2656402-2656421 | None:intergenic | 10.0% |
| !! | AAAATTTGCAATACATTTAT+AGG | - | chr3.3:2656720-2656739 | MS.gene67793:CDS | 15.0% |
| !! | AAATTTGCAATACATTTATA+GGG | - | chr3.3:2656721-2656740 | MS.gene67793:CDS | 15.0% |
| !! | ATAAGAAATTGCAAAAAATT+TGG | - | chr3.3:2656839-2656858 | MS.gene67793:CDS | 15.0% |
| !! | TAAGAAATTGCAAAAAATTT+GGG | - | chr3.3:2656840-2656859 | MS.gene67793:CDS | 15.0% |
| !!! | TTATAGATTTTCAATACTTT+TGG | - | chr3.3:2657027-2657046 | MS.gene67793:intron | 15.0% |
| !! | AATTTGCAATACATTTATAG+GGG | - | chr3.3:2656722-2656741 | MS.gene67793:CDS | 20.0% |
| !! | CTTTATACAGTTATTTATTG+TGG | - | chr3.3:2657949-2657968 | MS.gene67793:intron | 20.0% |
| !! | GGTTTATATAAGAAATTCAA+GGG | - | chr3.3:2656805-2656824 | MS.gene67793:CDS | 20.0% |
| !! | GTTTATATAAGAAATTCAAG+GGG | - | chr3.3:2656806-2656825 | MS.gene67793:CDS | 20.0% |
| !! | TAATTATAACCATTGTTCTA+AGG | + | chr3.3:2656899-2656918 | None:intergenic | 20.0% |
| !! | TATATAAACCCCTATAAATT+GGG | + | chr3.3:2656795-2656814 | None:intergenic | 20.0% |
| !! | TATTGAAAATCTATAAGCAA+AGG | + | chr3.3:2657023-2657042 | None:intergenic | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr3.3:2656796-2656815 | None:intergenic | 20.0% |
| ! | AAAGAAATTGCCCAATTTAT+AGG | - | chr3.3:2656782-2656801 | MS.gene67793:CDS | 25.0% |
| ! | AAATTGCAAAAAATTTGGGT+CGG | - | chr3.3:2656844-2656863 | MS.gene67793:CDS | 25.0% |
| ! | AAGAAATTGCCCAATTTATA+GGG | - | chr3.3:2656783-2656802 | MS.gene67793:CDS | 25.0% |
| ! | ACACAACAAAATACAAAGAA+TGG | + | chr3.3:2656657-2656676 | None:intergenic | 25.0% |
| ! | ATAAATAACTGTATAAAGCG+TGG | + | chr3.3:2657947-2657966 | None:intergenic | 25.0% |
| ! | GGGTTTATATAAGAAATTCA+AGG | - | chr3.3:2656804-2656823 | MS.gene67793:CDS | 25.0% |
| ! | GTGTATGAGAAACAAAATTA+TGG | + | chr3.3:2656632-2656651 | None:intergenic | 25.0% |
| ! | TACAGTTATTTATTGTGGTT+TGG | - | chr3.3:2657954-2657973 | MS.gene67793:intron | 25.0% |
| ! | TATTAAGTGGAATGAAAAAC+CGG | - | chr3.3:2658123-2658142 | MS.gene67793:intron | 25.0% |
| ! | TTGTAGATTCCCTTAAAAAA+GGG | - | chr3.3:2656559-2656578 | MS.gene67793:CDS | 25.0% |
| !!! | TATTTTTACGAACGTTTCAA+AGG | - | chr3.3:2657108-2657127 | MS.gene67793:CDS | 25.0% |
| AAACGTTCGTAAAAATACCA+TGG | + | chr3.3:2657105-2657124 | None:intergenic | 30.0% | |
| AACGTTCGTAAAAATACCAT+GGG | + | chr3.3:2657104-2657123 | None:intergenic | 30.0% | |
| AGAAATTGCCCAATTTATAG+GGG | - | chr3.3:2656784-2656803 | MS.gene67793:CDS | 30.0% | |
| AGTATCCAATCGATATTAAG+TGG | - | chr3.3:2658110-2658129 | MS.gene67793:intron | 30.0% | |
| CATCATTAATTGGATTTGAC+GGG | + | chr3.3:2657599-2657618 | None:intergenic | 30.0% | |
| CCTTCAAAAAAGAGAAAAAC+TGG | + | chr3.3:2656922-2656941 | None:intergenic | 30.0% | |
| GCATCATTAATTGGATTTGA+CGG | + | chr3.3:2657600-2657619 | None:intergenic | 30.0% | |
| GTTGTAGATTCCCTTAAAAA+AGG | - | chr3.3:2656558-2656577 | MS.gene67793:CDS | 30.0% | |
| TCATTCCACTTAATATCGAT+TGG | + | chr3.3:2658118-2658137 | None:intergenic | 30.0% | |
| TGTTTGTATTCTGTAGCTTA+CGG | - | chr3.3:2657071-2657090 | MS.gene67793:CDS | 30.0% | |
| ! | CAGCAGCATTAATTTGAAAT+TGG | + | chr3.3:2657479-2657498 | None:intergenic | 30.0% |
| ! | TAATATCGATTGGATACTCA+CGG | + | chr3.3:2658108-2658127 | None:intergenic | 30.0% |
| ! | TCTAGGTTTGGTATATGTTA+CGG | - | chr3.3:2657171-2657190 | MS.gene67793:CDS | 30.0% |
| ! | TTTCGATATTGGTGATAATG+AGG | - | chr3.3:2657770-2657789 | MS.gene67793:intron | 30.0% |
| !!! | ATTGCAAATTTTTTTTCGCC+CGG | + | chr3.3:2656712-2656731 | None:intergenic | 30.0% |
| !!! | CCAGTTTTTCTCTTTTTTGA+AGG | - | chr3.3:2656919-2656938 | MS.gene67793:intron | 30.0% |
| !!! | TTTTTTTTACCCTGCATATG+CGG | + | chr3.3:2656606-2656625 | None:intergenic | 30.0% |
| AAAACCGGATAAAGCTACAT+CGG | - | chr3.3:2658138-2658157 | MS.gene67793:intron | 35.0% | |
| AAAATCTATAAGCAAAGGCG+AGG | + | chr3.3:2657018-2657037 | None:intergenic | 35.0% | |
| AAATAAATCAGCAGCAGCAA+CGG | + | chr3.3:2657544-2657563 | None:intergenic | 35.0% | |
| AAATCTATAAGCAAAGGCGA+GGG | + | chr3.3:2657017-2657036 | None:intergenic | 35.0% | |
| AATCGTAGGTTTAGACCTAA+TGG | + | chr3.3:2657261-2657280 | None:intergenic | 35.0% | |
| AATTAATGCTGCTGCTATTG+TGG | - | chr3.3:2657485-2657504 | MS.gene67793:intron | 35.0% | |
| AGGTAACTAATCGTCAATTG+AGG | - | chr3.3:2657337-2657356 | MS.gene67793:CDS | 35.0% | |
| ATATCACCATCATCAGGAAT+GGG | + | chr3.3:2657636-2657655 | None:intergenic | 35.0% | |
| ATATGTTACGGAGAGATCAA+TGG | - | chr3.3:2657183-2657202 | MS.gene67793:CDS | 35.0% | |
| ATTAATGCTGCTGCTATTGT+GGG | - | chr3.3:2657486-2657505 | MS.gene67793:intron | 35.0% | |
| GATCATTATGAGCAACCATT+AGG | - | chr3.3:2657243-2657262 | MS.gene67793:CDS | 35.0% | |
| GGAATCTACAACTACAACAT+TGG | + | chr3.3:2656550-2656569 | None:intergenic | 35.0% | |
| GTCAAATAGAGCATAGAGTT+TGG | - | chr3.3:2657130-2657149 | MS.gene67793:CDS | 35.0% | |
| TAAAACATGTGTCTCCAACT+GGG | + | chr3.3:2657853-2657872 | None:intergenic | 35.0% | |
| TTAAAACATGTGTCTCCAAC+TGG | + | chr3.3:2657854-2657873 | None:intergenic | 35.0% | |
| TTATCACCAATATCGAAAGC+AGG | + | chr3.3:2657768-2657787 | None:intergenic | 35.0% | |
| ! | AAGCTACATCGGTATTTTTC+AGG | - | chr3.3:2658149-2658168 | MS.gene67793:intron | 35.0% |
| ! | AGCATCGCATTTTGAATCAT+TGG | + | chr3.3:2656248-2656267 | None:intergenic | 35.0% |
| ! | AGCTACATCGGTATTTTTCA+GGG | - | chr3.3:2658150-2658169 | MS.gene67793:intron | 35.0% |
| ! | CAAAGTATCTAAATGTACGC+AGG | + | chr3.3:2657401-2657420 | None:intergenic | 35.0% |
| ! | TTGTACCAGCAAAATTTGCT+CGG | - | chr3.3:2658029-2658048 | MS.gene67793:intron | 35.0% |
| !! | AATACCGATGTAGCTTTATC+CGG | + | chr3.3:2658145-2658164 | None:intergenic | 35.0% |
| !! | GTATTTTGTTGTGTTGTGAG+TGG | - | chr3.3:2656663-2656682 | MS.gene67793:CDS | 35.0% |
| !! | TAATTTCTGGGATGATGATG+AGG | - | chr3.3:2657740-2657759 | MS.gene67793:intron | 35.0% |
| !!! | TTGCAAATTTTTTTTCGCCC+GGG | + | chr3.3:2656711-2656730 | None:intergenic | 35.0% |
| !!! | TTTTTTTACCCTGCATATGC+GGG | + | chr3.3:2656605-2656624 | None:intergenic | 35.0% |
| AAAACATGTGTCTCCAACTG+GGG | + | chr3.3:2657852-2657871 | None:intergenic | 40.0% | |
| AAACATCCCGTTATCGTCAT+AGG | + | chr3.3:2657286-2657305 | None:intergenic | 40.0% | |
| AATGCAACATCCACCAGATA+TGG | + | chr3.3:2656317-2656336 | None:intergenic | 40.0% | |
| ACTACCATATCACCATCATC+AGG | + | chr3.3:2657642-2657661 | None:intergenic | 40.0% | |
| AGAGAGAACAGATTTGTGGA+AGG | - | chr3.3:2658193-2658212 | MS.gene67793:intron | 40.0% | |
| ATTCACTCTTGACATGGATG+AGG | - | chr3.3:2657317-2657336 | MS.gene67793:CDS | 40.0% | |
| CATATCACCATCATCAGGAA+TGG | + | chr3.3:2657637-2657656 | None:intergenic | 40.0% | |
| CGATTGACCTATGACGATAA+CGG | - | chr3.3:2657276-2657295 | MS.gene67793:CDS | 40.0% | |
| CGTTAGAGAGAACAGATTTG+TGG | - | chr3.3:2658189-2658208 | MS.gene67793:intron | 40.0% | |
| GAGTTGTGCGCATCATTAAT+TGG | + | chr3.3:2657609-2657628 | None:intergenic | 40.0% | |
| GATTGACCTATGACGATAAC+GGG | - | chr3.3:2657277-2657296 | MS.gene67793:CDS | 40.0% | |
| GTTGCTCATAATGATCAAGC+AGG | + | chr3.3:2657239-2657258 | None:intergenic | 40.0% | |
| TATCGTCATAGGTCAATCGT+AGG | + | chr3.3:2657275-2657294 | None:intergenic | 40.0% | |
| TATGGATGTCGAAATGGATG+TGG | - | chr3.3:2657800-2657819 | MS.gene67793:intron | 40.0% | |
| TCAGAACGTGGCTAATTTCT+GGG | - | chr3.3:2657728-2657747 | MS.gene67793:intron | 40.0% | |
| TCATCCATGTCAAGAGTGAA+TGG | + | chr3.3:2657318-2657337 | None:intergenic | 40.0% | |
| TTCAGAACGTGGCTAATTTC+TGG | - | chr3.3:2657727-2657746 | MS.gene67793:intron | 40.0% | |
| TTTATTTCCAGCAGTTCCAC+CGG | - | chr3.3:2657557-2657576 | MS.gene67793:intron | 40.0% | |
| ! | AATTAGCCACGTTCTGAATC+TGG | + | chr3.3:2657725-2657744 | None:intergenic | 40.0% |
| ! | ACCAGATATGGAAGTGTATC+GGG | + | chr3.3:2656305-2656324 | None:intergenic | 40.0% |
| ! | AGAGCATAGAGTTTGGTTTC+AGG | - | chr3.3:2657137-2657156 | MS.gene67793:CDS | 40.0% |
| ! | ATTAGCCACGTTCTGAATCT+GGG | + | chr3.3:2657724-2657743 | None:intergenic | 40.0% |
| ! | CACCAGATATGGAAGTGTAT+CGG | + | chr3.3:2656306-2656325 | None:intergenic | 40.0% |
| ! | CGATATTGGTGATAATGAGG+AGG | - | chr3.3:2657773-2657792 | MS.gene67793:intron | 40.0% |
| ! | TGATAATGAGGAGGCTGATA+TGG | - | chr3.3:2657782-2657801 | MS.gene67793:intron | 40.0% |
| ! | TTTGGTTTCAGGATACCAGA+GGG | - | chr3.3:2657148-2657167 | MS.gene67793:CDS | 40.0% |
| !! | ATAACCATTGTTCTAAGGCC+CGG | + | chr3.3:2656894-2656913 | None:intergenic | 40.0% |
| !! | CATTCCTGATGATGGTGATA+TGG | - | chr3.3:2657635-2657654 | MS.gene67793:intron | 40.0% |
| !! | GCTACATCGGTATTTTTCAG+GGG | - | chr3.3:2658151-2658170 | MS.gene67793:intron | 40.0% |
| !! | TGCATGCATTGATTCATCAG+TGG | - | chr3.3:2656336-2656355 | MS.gene67793:CDS | 40.0% |
| !! | TTTTGTTGTGTTGTGAGTGG+CGG | - | chr3.3:2656666-2656685 | MS.gene67793:CDS | 40.0% |
| AAAAAATTTGGGTCGGAGCC+CGG | - | chr3.3:2656851-2656870 | MS.gene67793:CDS | 45.0% | |
| AATGGATGTGGTAGATGCTG+AGG | - | chr3.3:2657812-2657831 | MS.gene67793:intron | 45.0% | |
| AGACGAAGACGAAGATGAGT+CGG | + | chr3.3:2657427-2657446 | None:intergenic | 45.0% | |
| CATGGTGAAATGCAGCAACA+TGG | - | chr3.3:2657887-2657906 | MS.gene67793:intron | 45.0% | |
| CGATACACTTCCATATCTGG+TGG | - | chr3.3:2656304-2656323 | MS.gene67793:CDS | 45.0% | |
| CGATGTTGAATACCCTCCTT+TGG | + | chr3.3:2656184-2656203 | None:intergenic | 45.0% | |
| GAGGAACCTGCTTTCGATAT+TGG | - | chr3.3:2657759-2657778 | MS.gene67793:intron | 45.0% | |
| GCTTCCATTCACTCTTGACA+TGG | - | chr3.3:2657311-2657330 | MS.gene67793:CDS | 45.0% | |
| GGAACTATGACCATAGCTCA+AGG | - | chr3.3:2657358-2657377 | MS.gene67793:intron | 45.0% | |
| GGCTGATATGGATGTCGAAA+TGG | - | chr3.3:2657794-2657813 | MS.gene67793:intron | 45.0% | |
| TATACCAAACCTAGACCCTC+TGG | + | chr3.3:2657166-2657185 | None:intergenic | 45.0% | |
| TCCCGATACACTTCCATATC+TGG | - | chr3.3:2656301-2656320 | MS.gene67793:CDS | 45.0% | |
| TCCCTTAAAAAAGGGCAACC+CGG | - | chr3.3:2656567-2656586 | MS.gene67793:CDS | 45.0% | |
| TCGTCTTCGTCATCTGATGA+TGG | - | chr3.3:2657453-2657472 | MS.gene67793:intron | 45.0% | |
| TGACATGCAACCTTGAGCTA+TGG | + | chr3.3:2657371-2657390 | None:intergenic | 45.0% | |
| TGTTACGGAGAGATCAATGG+CGG | - | chr3.3:2657186-2657205 | MS.gene67793:CDS | 45.0% | |
| TTATTTCCAGCAGTTCCACC+GGG | - | chr3.3:2657558-2657577 | MS.gene67793:intron | 45.0% | |
| ! | AAATTTGCTCGGCGAGCATT+TGG | - | chr3.3:2658040-2658059 | MS.gene67793:intron | 45.0% |
| ! | AATTTGCTCGGCGAGCATTT+GGG | - | chr3.3:2658041-2658060 | MS.gene67793:intron | 45.0% |
| ! | ACAGATTTGTGGAAGGCACA+AGG | - | chr3.3:2658200-2658219 | MS.gene67793:intron | 45.0% |
| ! | CAGATTTGTGGAAGGCACAA+GGG | - | chr3.3:2658201-2658220 | MS.gene67793:intron | 45.0% |
| ! | CCAGGATTTTTATGAAGCCC+GGG | - | chr3.3:2656691-2656710 | MS.gene67793:CDS | 45.0% |
| ! | GAAGATTAGAGCACCATACC+TGG | + | chr3.3:2656220-2656239 | None:intergenic | 45.0% |
| ! | GCCAGGATTTTTATGAAGCC+CGG | - | chr3.3:2656690-2656709 | MS.gene67793:CDS | 45.0% |
| ! | GGATTTTGTTCTTCCACCAC+TGG | + | chr3.3:2657681-2657700 | None:intergenic | 45.0% |
| ! | GTTTGGTTTCAGGATACCAG+AGG | - | chr3.3:2657147-2657166 | MS.gene67793:CDS | 45.0% |
| ! | TAGAGCACCATACCTGGTTT+GGG | + | chr3.3:2656214-2656233 | None:intergenic | 45.0% |
| ! | TATCGATTGGATACTCACGG+TGG | + | chr3.3:2658105-2658124 | None:intergenic | 45.0% |
| ! | TTAGAGCACCATACCTGGTT+TGG | + | chr3.3:2656215-2656234 | None:intergenic | 45.0% |
| ! | TTTAACGCTTGCTGCGTACA+TGG | - | chr3.3:2657869-2657888 | MS.gene67793:intron | 45.0% |
| !! | AAGGAGGGTATTCAACATCG+CGG | - | chr3.3:2656184-2656203 | MS.gene67793:CDS | 45.0% |
| !! | GTTGCTGTTGGTGGTGATAA+TGG | - | chr3.3:2657516-2657535 | MS.gene67793:intron | 45.0% |
| !!! | ACATCGGTATTTTTCAGGGG+CGG | - | chr3.3:2658154-2658173 | MS.gene67793:intron | 45.0% |
| !!! | ACCGGGTTGCCCTTTTTTAA+GGG | + | chr3.3:2656571-2656590 | None:intergenic | 45.0% |
| AAAAATTTGGGTCGGAGCCC+GGG | - | chr3.3:2656852-2656871 | MS.gene67793:CDS | 50.0% | |
| ACTCACGGTGGAACTCATCT+CGG | + | chr3.3:2658093-2658112 | None:intergenic | 50.0% | |
| AGTAGCCCAGATTCAGAACG+TGG | - | chr3.3:2657716-2657735 | MS.gene67793:intron | 50.0% | |
| CCCGGGCTTCATAAAAATCC+TGG | + | chr3.3:2656694-2656713 | None:intergenic | 50.0% | |
| CTCATCTCGGATCGTGATGA+AGG | + | chr3.3:2658080-2658099 | None:intergenic | 50.0% | |
| GATACCAGAGGGTCTAGGTT+TGG | - | chr3.3:2657159-2657178 | MS.gene67793:CDS | 50.0% | |
| GTAGATGCTGAGGATGCACA+TGG | - | chr3.3:2657822-2657841 | MS.gene67793:intron | 50.0% | |
| GTTCTTCCACCACTGGTACT+GGG | + | chr3.3:2657674-2657693 | None:intergenic | 50.0% | |
| TCACCATCATCAGGAATGGG+AGG | + | chr3.3:2657633-2657652 | None:intergenic | 50.0% | |
| TCTCCTCCCATTCCTGATGA+TGG | - | chr3.3:2657627-2657646 | MS.gene67793:intron | 50.0% | |
| TCTCGGATCGTGATGAAGGT+TGG | + | chr3.3:2658076-2658095 | None:intergenic | 50.0% | |
| TGTTCTTCCACCACTGGTAC+TGG | + | chr3.3:2657675-2657694 | None:intergenic | 50.0% | |
| TTCAGGATACCAGAGGGTCT+AGG | - | chr3.3:2657154-2657173 | MS.gene67793:CDS | 50.0% | |
| !!! | CACCGGGTTGCCCTTTTTTA+AGG | + | chr3.3:2656572-2656591 | None:intergenic | 50.0% |
| !!! | GGTATTTTTCAGGGGCGGTT+GGG | - | chr3.3:2658159-2658178 | MS.gene67793:intron | 50.0% |
| !!! | GTATTTTTCAGGGGCGGTTG+GGG | - | chr3.3:2658160-2658179 | MS.gene67793:intron | 50.0% |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr3.3:2656593-2656612 | MS.gene67793:CDS | 55.0% | |
| CGGTCAACCCAAACCAGGTA+TGG | - | chr3.3:2656204-2656223 | MS.gene67793:CDS | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr3.3:2656594-2656613 | MS.gene67793:CDS | 55.0% | |
| CTGAATCTGGGCTACTGCAG+CGG | + | chr3.3:2657712-2657731 | None:intergenic | 55.0% | |
| GCTGCTGCTATTGTGGGTTC+TGG | - | chr3.3:2657492-2657511 | MS.gene67793:intron | 55.0% | |
| GGCGGTGGTTGCTTCTATTC+AGG | - | chr3.3:2657204-2657223 | MS.gene67793:CDS | 55.0% | |
| GTTCCACCGGGTTTCGAAGT+AGG | - | chr3.3:2657570-2657589 | MS.gene67793:intron | 55.0% | |
| TACGGAGAGATCAATGGCGG+TGG | - | chr3.3:2657189-2657208 | MS.gene67793:CDS | 55.0% | |
| TGCACATGGCAATCCCCAGT+TGG | - | chr3.3:2657836-2657855 | MS.gene67793:intron | 55.0% | |
| TGTTCCTGACCCAGTACCAG+TGG | - | chr3.3:2657662-2657681 | MS.gene67793:intron | 55.0% | |
| ! | GCTCGCCGAGCAAATTTTGC+TGG | + | chr3.3:2658037-2658056 | None:intergenic | 55.0% |
| !! | GGTTCTGGTGTTGCTGTTGG+TGG | - | chr3.3:2657507-2657526 | MS.gene67793:intron | 55.0% |
| !! | GTGGGTTCTGGTGTTGCTGT+TGG | - | chr3.3:2657504-2657523 | MS.gene67793:intron | 55.0% |
| !!! | CGGTATTTTTCAGGGGCGGT+TGG | - | chr3.3:2658158-2658177 | MS.gene67793:intron | 55.0% |
| AACTGTCCTGCACGTGAGGC+AGG | - | chr3.3:2658252-2658271 | MS.gene67793:CDS | 60.0% | |
| ACCCAACTGTCCTGCACGTG+AGG | - | chr3.3:2658248-2658267 | MS.gene67793:CDS | 60.0% | |
| AGCTTACGGCTCGTGTCCCA+TGG | - | chr3.3:2657085-2657104 | MS.gene67793:CDS | 60.0% | |
| CATCGCGGTCAACCCAAACC+AGG | - | chr3.3:2656199-2656218 | MS.gene67793:CDS | 60.0% | |
| CCACCGGGTTTCGAAGTAGG+AGG | - | chr3.3:2657573-2657592 | MS.gene67793:intron | 60.0% | |
| CCTCCTACTTCGAAACCCGG+TGG | + | chr3.3:2657576-2657595 | None:intergenic | 60.0% | |
| CTCGCCGGGCCTTAGAACAA+TGG | - | chr3.3:2656887-2656906 | MS.gene67793:intron | 60.0% | |
| GCACGTGAGGCAGGTCGTTA+TGG | - | chr3.3:2658261-2658280 | MS.gene67793:CDS | 60.0% | |
| GCCTCACGTGCAGGACAGTT+GGG | + | chr3.3:2658252-2658271 | None:intergenic | 60.0% | |
| GCTACTGCAGCGGCAGTTTG+TGG | + | chr3.3:2657702-2657721 | None:intergenic | 60.0% | |
| GGGCCTCCTACTTCGAAACC+CGG | + | chr3.3:2657579-2657598 | None:intergenic | 60.0% | |
| TAACGACCTGCCTCACGTGC+AGG | + | chr3.3:2658261-2658280 | None:intergenic | 60.0% | |
| TCCTGACCCAGTACCAGTGG+TGG | - | chr3.3:2657665-2657684 | MS.gene67793:intron | 60.0% | |
| TCGAAACCCGGTGGAACTGC+TGG | + | chr3.3:2657567-2657586 | None:intergenic | 60.0% | |
| TGCCTCACGTGCAGGACAGT+TGG | + | chr3.3:2658253-2658272 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr3.3:2656589-2656608 | None:intergenic | 60.0% |
| ! | TCCACCACTGGTACTGGGTC+AGG | + | chr3.3:2657669-2657688 | None:intergenic | 60.0% |
| ! | GTGTTGTGAGTGGCGGAGCC+AGG | - | chr3.3:2656673-2656692 | MS.gene67793:CDS | 65.0% |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr3.3:2656588-2656607 | None:intergenic | 65.0% |
| !! | GTTCTAAGGCCCGGCGAGCC+CGG | + | chr3.3:2656885-2656904 | None:intergenic | 70.0% |
| !! | TTCTAAGGCCCGGCGAGCCC+GGG | + | chr3.3:2656884-2656903 | None:intergenic | 70.0% |
| ! | TCGGAGCCCGGGCGAGTGCC+CGG | - | chr3.3:2656863-2656882 | MS.gene67793:CDS | 80.0% |
| ! | CGGAGCCCGGGCGAGTGCCC+GGG | - | chr3.3:2656864-2656883 | MS.gene67793:CDS | 85.0% |
| ! | GCGAGCCCGGGCACTCGCCC+GGG | + | chr3.3:2656872-2656891 | None:intergenic | 85.0% |
| ! | GGCGAGCCCGGGCACTCGCC+CGG | + | chr3.3:2656873-2656892 | None:intergenic | 85.0% |
| ! | GGCGAGTGCCCGGGCTCGCC+GGG | - | chr3.3:2656873-2656892 | MS.gene67793:CDS | 85.0% |
| ! | GGGCGAGTGCCCGGGCTCGC+CGG | - | chr3.3:2656872-2656891 | MS.gene67793:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 2656173 | 2658288 | 2656173 | ID=MS.gene67793 |
| chr3.3 | mRNA | 2656173 | 2658288 | 2656173 | ID=MS.gene67793.t1;Parent=MS.gene67793 |
| chr3.3 | exon | 2658241 | 2658288 | 2658241 | ID=MS.gene67793.t1.exon1;Parent=MS.gene67793.t1 |
| chr3.3 | CDS | 2658241 | 2658288 | 2658241 | ID=cds.MS.gene67793.t1;Parent=MS.gene67793.t1 |
| chr3.3 | exon | 2657059 | 2657374 | 2657059 | ID=MS.gene67793.t1.exon2;Parent=MS.gene67793.t1 |
| chr3.3 | CDS | 2657059 | 2657374 | 2657059 | ID=cds.MS.gene67793.t1;Parent=MS.gene67793.t1 |
| chr3.3 | exon | 2656553 | 2656893 | 2656553 | ID=MS.gene67793.t1.exon3;Parent=MS.gene67793.t1 |
| chr3.3 | CDS | 2656553 | 2656893 | 2656553 | ID=cds.MS.gene67793.t1;Parent=MS.gene67793.t1 |
| chr3.3 | exon | 2656173 | 2656433 | 2656173 | ID=MS.gene67793.t1.exon4;Parent=MS.gene67793.t1 |
| chr3.3 | CDS | 2656173 | 2656433 | 2656173 | ID=cds.MS.gene67793.t1;Parent=MS.gene67793.t1 |
| Gene Sequence |
| Protein sequence |
