Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67799.t1 | PNX89523.1 | 39.6 | 338 | 188 | 5 | 17 | 352 | 11 | 334 | 1.50E-10 | 77.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67799.t1 | A0A2K3MFE8 | 39.6 | 338 | 188 | 5 | 17 | 352 | 11 | 334 | 1.1e-10 | 77.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67799.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 121 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGTGGAGGCGGATTT+TGG | 0.148513 | 3.3:-2620713 | None:intergenic |
| AGATTTGTTGCACGAGTGTT+TGG | 0.301888 | 3.3:+2621060 | MS.gene67799:CDS |
| TTCCTCCAGCGGCATTTCTC+AGG | 0.312507 | 3.3:+2621169 | MS.gene67799:CDS |
| CCTGATTGCTGCCGAGATAC+TGG | 0.331416 | 3.3:+2620470 | MS.gene67799:CDS |
| TTCGGGATGAGGAGGAGAAT+TGG | 0.336432 | 3.3:-2620649 | None:intergenic |
| ACTCGTGCAACAAATCTTCT+TGG | 0.342234 | 3.3:-2621054 | None:intergenic |
| GGTGGGAATGTGGCTAATAA+TGG | 0.350488 | 3.3:+2620864 | MS.gene67799:CDS |
| CTATAGGCTAAGGAGTTTGC+TGG | 0.354712 | 3.3:+2620311 | MS.gene67799:CDS |
| ACTCCTTAGCCTATAGAAAA+AGG | 0.359699 | 3.3:-2620304 | None:intergenic |
| TAAGACACACTTACCTTGTC+TGG | 0.362065 | 3.3:-2619485 | None:intergenic |
| TTCAACTCCTGTGGCAGAAC+CGG | 0.369949 | 3.3:+2620602 | MS.gene67799:CDS |
| TCCCTAGCATACATAACATA+TGG | 0.379144 | 3.3:-2621270 | None:intergenic |
| GACACAAGAGGTTCGAGGTT+TGG | 0.386987 | 3.3:+2620252 | MS.gene67799:CDS |
| TCATGGCCGCGCTTACATTC+AGG | 0.392786 | 3.3:+2619441 | None:intergenic |
| TGGCAGTTGGGAAAAGTGTT+AGG | 0.395161 | 3.3:+2621226 | MS.gene67799:CDS |
| GGCATTGTGTGGTTGTTGAT+TGG | 0.403874 | 3.3:-2620682 | None:intergenic |
| TGATTGGCATCATGAACTTC+GGG | 0.411728 | 3.3:-2620666 | None:intergenic |
| CGGAGAACCGGCTGGCAGTT+GGG | 0.421662 | 3.3:+2621214 | MS.gene67799:CDS |
| TGATGCTGCTGCTGTTGCCA+TGG | 0.428743 | 3.3:+2620815 | MS.gene67799:CDS |
| TCCTCCAGCGGCATTTCTCA+GGG | 0.443998 | 3.3:+2621170 | MS.gene67799:CDS |
| CGGACAGGGGCTGTTCTACA+TGG | 0.447788 | 3.3:+2620380 | MS.gene67799:CDS |
| TCGGGATGAGGAGGAGAATT+GGG | 0.451241 | 3.3:-2620648 | None:intergenic |
| GACGATGATTCCATCGATCT+TGG | 0.451452 | 3.3:+2620549 | MS.gene67799:CDS |
| GATTTGTTGCACGAGTGTTT+GGG | 0.452697 | 3.3:+2621061 | MS.gene67799:CDS |
| AGAGATTTGTTACGGAGAAC+CGG | 0.452877 | 3.3:+2621202 | MS.gene67799:CDS |
| GTGGGAATGTGGCTAATAAT+GGG | 0.456886 | 3.3:+2620865 | MS.gene67799:CDS |
| CCAGTATCTCGGCAGCAATC+AGG | 0.457630 | 3.3:-2620470 | None:intergenic |
| GAGCACTTCCACCAGCCGTT+AGG | 0.466631 | 3.3:+2620333 | MS.gene67799:CDS |
| CGAGATACTGGATCCCTTGG+AGG | 0.468114 | 3.3:+2620482 | MS.gene67799:CDS |
| ATCGTCGTCGTTGTCTTCAT+CGG | 0.472155 | 3.3:-2620532 | None:intergenic |
| ACATCAACATCCGCTGGATC+CGG | 0.472816 | 3.3:-2620621 | None:intergenic |
| TTGATTGGCATCATGAACTT+CGG | 0.473733 | 3.3:-2620667 | None:intergenic |
| CAGCGGCATTTCTCAGGGGC+GGG | 0.478818 | 3.3:+2621175 | MS.gene67799:CDS |
| ATGAACTACGACACAGAGTC+TGG | 0.481562 | 3.3:+2620223 | MS.gene67799:CDS |
| ACAGGAGTTGAAGGAGGTGC+AGG | 0.491094 | 3.3:-2620591 | None:intergenic |
| CATGGTGAAGACTAGCAATC+TGG | 0.491937 | 3.3:+2620923 | MS.gene67799:CDS |
| ACGGAGAACCGGCTGGCAGT+TGG | 0.492128 | 3.3:+2621213 | MS.gene67799:CDS |
| GCTGGATCCGGTTCTGCCAC+AGG | 0.493035 | 3.3:-2620609 | None:intergenic |
| GATGCTGCTGCTGTTGCCAT+GGG | 0.497052 | 3.3:+2620816 | MS.gene67799:CDS |
| TGGGCTTTGACTTTCCGTGC+AGG | 0.505024 | 3.3:+2621121 | MS.gene67799:CDS |
| CGGCATTTCTCAGGGGCGGG+TGG | 0.507786 | 3.3:+2621178 | MS.gene67799:CDS |
| CCCTAGCATACATAACATAT+GGG | 0.511261 | 3.3:-2621269 | None:intergenic |
| GCATCATGAACTTCGGGATG+AGG | 0.512150 | 3.3:-2620660 | None:intergenic |
| GGTTCTGCCACAGGAGTTGA+AGG | 0.512252 | 3.3:-2620600 | None:intergenic |
| TCATAGGAAGTGAGGGGACG+CGG | 0.513245 | 3.3:+2620280 | MS.gene67799:CDS |
| AACGATGAAGATGTGGAAGA+TGG | 0.513612 | 3.3:+2620765 | MS.gene67799:CDS |
| CCAGCGGCATTTCTCAGGGG+CGG | 0.516500 | 3.3:+2621174 | MS.gene67799:CDS |
| GCAAAATCAAAGAAATTATG+TGG | 0.521917 | 3.3:-2620726 | None:intergenic |
| TGCCGAGATACTGGATCCCT+TGG | 0.522650 | 3.3:+2620479 | MS.gene67799:CDS |
| TCATACTTCAACAACCACTT+TGG | 0.527976 | 3.3:+2620198 | MS.gene67799:CDS |
| ACCCATATGTTATGTATGCT+AGG | 0.529159 | 3.3:+2621268 | MS.gene67799:CDS |
| GTATGCTAGGGAAGCTCGGA+TGG | 0.537149 | 3.3:+2621281 | MS.gene67799:CDS |
| AAGTGGTTGTTGAAGTATGA+TGG | 0.538484 | 3.3:-2620195 | None:intergenic |
| AACATCAATGCCAAGATCGA+TGG | 0.539611 | 3.3:-2620559 | None:intergenic |
| GCGTCTAAGTTACAACGGAC+AGG | 0.542298 | 3.3:+2620365 | MS.gene67799:CDS |
| CCGCCCCTGAGAAATGCCGC+TGG | 0.546065 | 3.3:-2621174 | None:intergenic |
| CATCCTACTTACAGATGCCA+TGG | 0.546268 | 3.3:+2621101 | MS.gene67799:CDS |
| ATTTGTTACGGAGAACCGGC+TGG | 0.553165 | 3.3:+2621206 | MS.gene67799:CDS |
| TCAAAGAAATTATGTGGAGG+CGG | 0.554584 | 3.3:-2620720 | None:intergenic |
| ATCTTCATCGTTGATATCCA+TGG | 0.554841 | 3.3:-2620754 | None:intergenic |
| CCCATATGTTATGTATGCTA+GGG | 0.556719 | 3.3:+2621269 | MS.gene67799:CDS |
| ACTCGACATGACCGAGCTAA+CGG | 0.557804 | 3.3:+2620413 | MS.gene67799:CDS |
| CTCCAAGGGATCCAGTATCT+CGG | 0.558445 | 3.3:-2620481 | None:intergenic |
| TAGAAGACACAAGAGGTTCG+AGG | 0.561323 | 3.3:+2620247 | MS.gene67799:CDS |
| TGTGGCTAATAATGGGAGAG+TGG | 0.562385 | 3.3:+2620872 | MS.gene67799:CDS |
| TGCACCTCCTTCAACTCCTG+TGG | 0.569911 | 3.3:+2620593 | MS.gene67799:CDS |
| GGTGCAACATCAACATCCGC+TGG | 0.570592 | 3.3:-2620627 | None:intergenic |
| GTATAATTCATACTCCTCCA+AGG | 0.570762 | 3.3:-2620496 | None:intergenic |
| TTATGTATGCTAGGGAAGCT+CGG | 0.572454 | 3.3:+2621277 | MS.gene67799:CDS |
| GGCATCTGTAAGTAGGATGG+TGG | 0.575659 | 3.3:-2621097 | None:intergenic |
| CGTCTAAGTTACAACGGACA+GGG | 0.576116 | 3.3:+2620366 | MS.gene67799:CDS |
| GGTGAAAACATGGGTGCAGG+TGG | 0.578164 | 3.3:+2620846 | MS.gene67799:CDS |
| ACTTTCCGTGCAGGATCAAG+TGG | 0.580280 | 3.3:+2621130 | MS.gene67799:CDS |
| AGGATCAAGTGGAAGGATAG+AGG | 0.581052 | 3.3:+2621141 | MS.gene67799:CDS |
| CATGGGTGCAGGTGGGAATG+TGG | 0.582106 | 3.3:+2620854 | MS.gene67799:CDS |
| TCCTTCCACTTGATCCTGCA+CGG | 0.582536 | 3.3:-2621135 | None:intergenic |
| CCTCTCACGAACCGTTAGCT+CGG | 0.586517 | 3.3:-2620424 | None:intergenic |
| CGGGTGGAAGAGATTTGTTA+CGG | 0.590170 | 3.3:+2621194 | MS.gene67799:CDS |
| GAAATGCCGCTGGAGGAAGA+TGG | 0.590786 | 3.3:-2621164 | None:intergenic |
| CCGAGCTAACGGTTCGTGAG+AGG | 0.592918 | 3.3:+2620424 | MS.gene67799:CDS |
| CCTCCAGCGGCATTTCTCAG+GGG | 0.594266 | 3.3:+2621171 | MS.gene67799:CDS |
| GGAGTTGAAGGAGGTGCAGG+AGG | 0.595751 | 3.3:-2620588 | None:intergenic |
| GGGTAACAATGGTGAAAACA+TGG | 0.597431 | 3.3:+2620836 | MS.gene67799:CDS |
| TGTGGCAGAACCGGATCCAG+CGG | 0.598738 | 3.3:+2620611 | MS.gene67799:CDS |
| CCCCTGAGAAATGCCGCTGG+AGG | 0.603022 | 3.3:-2621171 | None:intergenic |
| TCATGAACTTCGGGATGAGG+AGG | 0.603718 | 3.3:-2620657 | None:intergenic |
| CATGGCATCTGTAAGTAGGA+TGG | 0.604155 | 3.3:-2621100 | None:intergenic |
| GTGCAACAAATCTTCTTGGT+AGG | 0.604465 | 3.3:-2621050 | None:intergenic |
| TCGGCAGCAATCAGGAAAGG+AGG | 0.606699 | 3.3:-2620462 | None:intergenic |
| GCAGTATGAGACCTAACGGC+TGG | 0.608111 | 3.3:-2620344 | None:intergenic |
| AGCCCATGGCATCTGTAAGT+AGG | 0.608677 | 3.3:-2621104 | None:intergenic |
| CACAACAATCGATCCAGACA+AGG | 0.610416 | 3.3:+2619472 | MS.gene67799:CDS |
| ATCTCGGCAGCAATCAGGAA+AGG | 0.610893 | 3.3:-2620465 | None:intergenic |
| ATCCTACTTACAGATGCCAT+GGG | 0.611432 | 3.3:+2621102 | MS.gene67799:CDS |
| TGTCAGACTTGCAGAATACA+TGG | 0.612787 | 3.3:+2620905 | MS.gene67799:CDS |
| GGATATCAACGATGAAGATG+TGG | 0.616665 | 3.3:+2620758 | MS.gene67799:CDS |
| TATAATTCATACTCCTCCAA+GGG | 0.616989 | 3.3:-2620495 | None:intergenic |
| GTATGAGACCTAACGGCTGG+TGG | 0.617542 | 3.3:-2620341 | None:intergenic |
| CGGCAGCAATCAGGAAAGGA+GGG | 0.618638 | 3.3:-2620461 | None:intergenic |
| AATGGTGAAAACATGGGTGC+AGG | 0.619307 | 3.3:+2620843 | MS.gene67799:CDS |
| GCATCTGTAAGTAGGATGGT+GGG | 0.632206 | 3.3:-2621096 | None:intergenic |
| GCACGGAAAGTCAAAGCCCA+TGG | 0.634938 | 3.3:-2621118 | None:intergenic |
| TCCGTGCAGGATCAAGTGGA+AGG | 0.635551 | 3.3:+2621134 | MS.gene67799:CDS |
| TGGGCATCATCGGCATTGTG+TGG | 0.641687 | 3.3:-2620693 | None:intergenic |
| GTCGTAGTTCATCACCAAAG+TGG | 0.648562 | 3.3:-2620212 | None:intergenic |
| AGACGCAGTATGAGACCTAA+CGG | 0.653534 | 3.3:-2620348 | None:intergenic |
| GCTGTTGCCATGGGTAACAA+TGG | 0.655928 | 3.3:+2620825 | MS.gene67799:CDS |
| GCAGCATCAAAGAAGTTATG+CGG | 0.656305 | 3.3:-2620801 | None:intergenic |
| GGACAGGGGCTGTTCTACAT+GGG | 0.657468 | 3.3:+2620381 | MS.gene67799:CDS |
| TAGAGGCCATCTTCCTCCAG+CGG | 0.669990 | 3.3:+2621158 | MS.gene67799:CDS |
| GAACTTCCTGAATGTAAGCG+CGG | 0.670661 | 3.3:-2619447 | None:intergenic |
| GTGAAAACATGGGTGCAGGT+GGG | 0.671071 | 3.3:+2620847 | MS.gene67799:CDS |
| GTTGTCTTCATCGGATGACG+AGG | 0.675992 | 3.3:-2620523 | None:intergenic |
| GCATCAAAGAAGTTATGCGG+AGG | 0.686757 | 3.3:-2620798 | None:intergenic |
| GTCTGGTTAGAAGACACAAG+AGG | 0.687596 | 3.3:+2620240 | MS.gene67799:CDS |
| ATACTGCGTCTAAGTTACAA+CGG | 0.691908 | 3.3:+2620360 | MS.gene67799:CDS |
| AAATCAAAGAAATTATGTGG+AGG | 0.696121 | 3.3:-2620723 | None:intergenic |
| TCTGCCACAGGAGTTGAAGG+AGG | 0.696157 | 3.3:-2620597 | None:intergenic |
| TCTGTAAGTAGGATGGTGGG+CGG | 0.704271 | 3.3:-2621093 | None:intergenic |
| GTCTAAGTTACAACGGACAG+GGG | 0.730281 | 3.3:+2620367 | MS.gene67799:CDS |
| GGTAACAATGGTGAAAACAT+GGG | 0.742892 | 3.3:+2620837 | MS.gene67799:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTAAAAAAGAACAC+AGG | + | chr3.3:2620078-2620097 | MS.gene67799:intron | 15.0% |
| !!! | AAATGATAACAATTTAAAAC+AGG | - | chr3.3:2621020-2621039 | None:intergenic | 15.0% |
| !!! | AATTACTGTTATATAGTTTT+TGG | + | chr3.3:2620979-2620998 | MS.gene67799:intron | 15.0% |
| ! | AAATCAAAGAAATTATGTGG+AGG | - | chr3.3:2620726-2620745 | None:intergenic | 25.0% |
| ! | AGTACACAAAATCTTAGATA+CGG | - | chr3.3:2619738-2619757 | None:intergenic | 25.0% |
| ! | GCAAAATCAAAGAAATTATG+TGG | - | chr3.3:2620729-2620748 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTTACATGTTTA+AGG | + | chr3.3:2619625-2619644 | MS.gene67799:intron | 25.0% |
| AAATATATTGCAGAGTGACA+AGG | - | chr3.3:2619821-2619840 | None:intergenic | 30.0% | |
| AGTACACATTATCGTAGATA+CGG | - | chr3.3:2619925-2619944 | None:intergenic | 30.0% | |
| TATAATTCATACTCCTCCAA+GGG | - | chr3.3:2620498-2620517 | None:intergenic | 30.0% | |
| TTGTTACTAAACTTTGAGTG+TGG | + | chr3.3:2619522-2619541 | MS.gene67799:intron | 30.0% | |
| AAAATCTACCGGATACCAAA+AGG | - | chr3.3:2619596-2619615 | None:intergenic | 35.0% | |
| AAATCTACCGGATACCAAAA+GGG | - | chr3.3:2619595-2619614 | None:intergenic | 35.0% | |
| AAGTGGTTGTTGAAGTATGA+TGG | - | chr3.3:2620198-2620217 | None:intergenic | 35.0% | |
| ACCCATATGTTATGTATGCT+AGG | + | chr3.3:2621268-2621287 | MS.gene67799:CDS | 35.0% | |
| ACTCCTTAGCCTATAGAAAA+AGG | - | chr3.3:2620307-2620326 | None:intergenic | 35.0% | |
| ATACTGCGTCTAAGTTACAA+CGG | + | chr3.3:2620360-2620379 | MS.gene67799:CDS | 35.0% | |
| ATCTTCATCGTTGATATCCA+TGG | - | chr3.3:2620757-2620776 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+AGG | - | chr3.3:2619782-2619801 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+TGG | - | chr3.3:2619782-2619801 | None:intergenic | 35.0% | |
| CCCATATGTTATGTATGCTA+GGG | + | chr3.3:2621269-2621288 | MS.gene67799:CDS | 35.0% | |
| CCCTAGCATACATAACATAT+GGG | - | chr3.3:2621272-2621291 | None:intergenic | 35.0% | |
| GGTAACAATGGTGAAAACAT+GGG | + | chr3.3:2620837-2620856 | MS.gene67799:CDS | 35.0% | |
| GTATAATTCATACTCCTCCA+AGG | - | chr3.3:2620499-2620518 | None:intergenic | 35.0% | |
| TCAAAGAAATTATGTGGAGG+CGG | - | chr3.3:2620723-2620742 | None:intergenic | 35.0% | |
| TCATACTTCAACAACCACTT+TGG | + | chr3.3:2620198-2620217 | MS.gene67799:CDS | 35.0% | |
| TCCCTAGCATACATAACATA+TGG | - | chr3.3:2621273-2621292 | None:intergenic | 35.0% | |
| TTACAGAGTGACAACAAACT+GGG | - | chr3.3:2619968-2619987 | None:intergenic | 35.0% | |
| TTCTTGTGTGTGCATAATAG+TGG | - | chr3.3:2619714-2619733 | None:intergenic | 35.0% | |
| TTGATTGGCATCATGAACTT+CGG | - | chr3.3:2620670-2620689 | None:intergenic | 35.0% | |
| TTTACAGAGTGACATCAAAC+TGG | - | chr3.3:2620007-2620026 | None:intergenic | 35.0% | |
| ! | GAAGTTGTCACTTGTAATGT+AGG | + | chr3.3:2620158-2620177 | MS.gene67799:intron | 35.0% |
| ! | TTATTTTCCTGTCTCCCTTT+TGG | + | chr3.3:2619578-2619597 | MS.gene67799:intron | 35.0% |
| AACATCAATGCCAAGATCGA+TGG | - | chr3.3:2620562-2620581 | None:intergenic | 40.0% | |
| AACCAACAACAAGGCAAACA+TGG | - | chr3.3:2619847-2619866 | None:intergenic | 40.0% | |
| AACGATGAAGATGTGGAAGA+TGG | + | chr3.3:2620765-2620784 | MS.gene67799:CDS | 40.0% | |
| ACTCGTGCAACAAATCTTCT+TGG | - | chr3.3:2621057-2621076 | None:intergenic | 40.0% | |
| ATCCTACTTACAGATGCCAT+GGG | + | chr3.3:2621102-2621121 | MS.gene67799:CDS | 40.0% | |
| ATGTTTGCCTTCTTGTTGGT+TGG | + | chr3.3:2619657-2619676 | MS.gene67799:intron | 40.0% | |
| GACTATGTTTGCCTTCTTGT+TGG | + | chr3.3:2619653-2619672 | MS.gene67799:intron | 40.0% | |
| GCAGCATCAAAGAAGTTATG+CGG | - | chr3.3:2620804-2620823 | None:intergenic | 40.0% | |
| GGATATCAACGATGAAGATG+TGG | + | chr3.3:2620758-2620777 | MS.gene67799:CDS | 40.0% | |
| GGGTAACAATGGTGAAAACA+TGG | + | chr3.3:2620836-2620855 | MS.gene67799:CDS | 40.0% | |
| GTCACTTGTAATGTAGGATG+AGG | + | chr3.3:2620164-2620183 | MS.gene67799:intron | 40.0% | |
| GTGCAACAAATCTTCTTGGT+AGG | - | chr3.3:2621053-2621072 | None:intergenic | 40.0% | |
| GTGGGAATGTGGCTAATAAT+GGG | + | chr3.3:2620865-2620884 | MS.gene67799:CDS | 40.0% | |
| TAAGACACACTTACCTTGTC+TGG | - | chr3.3:2619488-2619507 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAACA+AGG | - | chr3.3:2619856-2619875 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAAGA+AGG | - | chr3.3:2619667-2619686 | None:intergenic | 40.0% | |
| TGAAGCCATGCAAAATCTAC+CGG | - | chr3.3:2619607-2619626 | None:intergenic | 40.0% | |
| TGATTGGCATCATGAACTTC+GGG | - | chr3.3:2620669-2620688 | None:intergenic | 40.0% | |
| TGTCAGACTTGCAGAATACA+TGG | + | chr3.3:2620905-2620924 | MS.gene67799:CDS | 40.0% | |
| TTATGTATGCTAGGGAAGCT+CGG | + | chr3.3:2621277-2621296 | MS.gene67799:CDS | 40.0% | |
| ! | GGACCTTTTTCTATAGGCTA+AGG | + | chr3.3:2620301-2620320 | MS.gene67799:CDS | 40.0% |
| ! | GGTGTTTTCATAGGAAGTGA+GGG | + | chr3.3:2620273-2620292 | MS.gene67799:CDS | 40.0% |
| ! | GTGTTTTCATAGGAAGTGAG+GGG | + | chr3.3:2620274-2620293 | MS.gene67799:CDS | 40.0% |
| ! | GTTTTCACCATTGTTACCCA+TGG | - | chr3.3:2620835-2620854 | None:intergenic | 40.0% |
| ! | TGGTGTTTTCATAGGAAGTG+AGG | + | chr3.3:2620272-2620291 | MS.gene67799:CDS | 40.0% |
| !! | AATTATGTGGAGGCGGATTT+TGG | - | chr3.3:2620716-2620735 | None:intergenic | 40.0% |
| !! | AGAGATTTGTTACGGAGAAC+CGG | + | chr3.3:2621202-2621221 | MS.gene67799:CDS | 40.0% |
| !! | AGATTTGTTGCACGAGTGTT+TGG | + | chr3.3:2621060-2621079 | MS.gene67799:CDS | 40.0% |
| !! | ATGTTTGCCTTGTTGTTGGT+TGG | + | chr3.3:2619846-2619865 | MS.gene67799:intron | 40.0% |
| !! | ATTATGTGGAGGCGGATTTT+GGG | - | chr3.3:2620715-2620734 | None:intergenic | 40.0% |
| !! | GATTTGTTGCACGAGTGTTT+GGG | + | chr3.3:2621061-2621080 | MS.gene67799:CDS | 40.0% |
| !!! | TCGAGGTTTGGTGTTTTCAT+AGG | + | chr3.3:2620264-2620283 | MS.gene67799:CDS | 40.0% |
| AATGGTGAAAACATGGGTGC+AGG | + | chr3.3:2620843-2620862 | MS.gene67799:CDS | 45.0% | |
| AGACGCAGTATGAGACCTAA+CGG | - | chr3.3:2620351-2620370 | None:intergenic | 45.0% | |
| AGGATCAAGTGGAAGGATAG+AGG | + | chr3.3:2621141-2621160 | MS.gene67799:CDS | 45.0% | |
| ATCGTCGTCGTTGTCTTCAT+CGG | - | chr3.3:2620535-2620554 | None:intergenic | 45.0% | |
| ATGAACTACGACACAGAGTC+TGG | + | chr3.3:2620223-2620242 | MS.gene67799:CDS | 45.0% | |
| CACAACAATCGATCCAGACA+AGG | + | chr3.3:2619472-2619491 | MS.gene67799:CDS | 45.0% | |
| CATCCTACTTACAGATGCCA+TGG | + | chr3.3:2621101-2621120 | MS.gene67799:CDS | 45.0% | |
| CATGGCATCTGTAAGTAGGA+TGG | - | chr3.3:2621103-2621122 | None:intergenic | 45.0% | |
| CATGGTGAAGACTAGCAATC+TGG | + | chr3.3:2620923-2620942 | MS.gene67799:CDS | 45.0% | |
| CGTCTAAGTTACAACGGACA+GGG | + | chr3.3:2620366-2620385 | MS.gene67799:CDS | 45.0% | |
| CTATAGGCTAAGGAGTTTGC+TGG | + | chr3.3:2620311-2620330 | MS.gene67799:CDS | 45.0% | |
| GAACTTCCTGAATGTAAGCG+CGG | - | chr3.3:2619450-2619469 | None:intergenic | 45.0% | |
| GACGATGATTCCATCGATCT+TGG | + | chr3.3:2620549-2620568 | MS.gene67799:CDS | 45.0% | |
| GCATCAAAGAAGTTATGCGG+AGG | - | chr3.3:2620801-2620820 | None:intergenic | 45.0% | |
| GCATCTGTAAGTAGGATGGT+GGG | - | chr3.3:2621099-2621118 | None:intergenic | 45.0% | |
| GGCATTGTGTGGTTGTTGAT+TGG | - | chr3.3:2620685-2620704 | None:intergenic | 45.0% | |
| GGTGGGAATGTGGCTAATAA+TGG | + | chr3.3:2620864-2620883 | MS.gene67799:CDS | 45.0% | |
| GTCGTAGTTCATCACCAAAG+TGG | - | chr3.3:2620215-2620234 | None:intergenic | 45.0% | |
| GTCTAAGTTACAACGGACAG+GGG | + | chr3.3:2620367-2620386 | MS.gene67799:CDS | 45.0% | |
| GTCTGGTTAGAAGACACAAG+AGG | + | chr3.3:2620240-2620259 | MS.gene67799:CDS | 45.0% | |
| GTGAAGACTAGCAATCTGGT+AGG | + | chr3.3:2620927-2620946 | MS.gene67799:intron | 45.0% | |
| TAGAAGACACAAGAGGTTCG+AGG | + | chr3.3:2620247-2620266 | MS.gene67799:CDS | 45.0% | |
| ! | GACCATGTTTGCCTTGTTGT+TGG | + | chr3.3:2619842-2619861 | MS.gene67799:intron | 45.0% |
| ! | GGTATCCGGTAGATTTTGCA+TGG | + | chr3.3:2619599-2619618 | MS.gene67799:intron | 45.0% |
| ! | TGTGGCTAATAATGGGAGAG+TGG | + | chr3.3:2620872-2620891 | MS.gene67799:CDS | 45.0% |
| !! | CGGGTGGAAGAGATTTGTTA+CGG | + | chr3.3:2621194-2621213 | MS.gene67799:CDS | 45.0% |
| !! | CTTTGATTTTGCTGCTGCCA+TGG | + | chr3.3:2620737-2620756 | MS.gene67799:CDS | 45.0% |
| !! | TGGCAGTTGGGAAAAGTGTT+AGG | + | chr3.3:2621226-2621245 | MS.gene67799:CDS | 45.0% |
| ACATCAACATCCGCTGGATC+CGG | - | chr3.3:2620624-2620643 | None:intergenic | 50.0% | |
| ACTCGACATGACCGAGCTAA+CGG | + | chr3.3:2620413-2620432 | MS.gene67799:CDS | 50.0% | |
| ACTTTCCGTGCAGGATCAAG+TGG | + | chr3.3:2621130-2621149 | MS.gene67799:CDS | 50.0% | |
| AGCCCATGGCATCTGTAAGT+AGG | - | chr3.3:2621107-2621126 | None:intergenic | 50.0% | |
| ATCTCGGCAGCAATCAGGAA+AGG | - | chr3.3:2620468-2620487 | None:intergenic | 50.0% | |
| CTCCAAGGGATCCAGTATCT+CGG | - | chr3.3:2620484-2620503 | None:intergenic | 50.0% | |
| GACACAAGAGGTTCGAGGTT+TGG | + | chr3.3:2620252-2620271 | MS.gene67799:CDS | 50.0% | |
| GCATCATGAACTTCGGGATG+AGG | - | chr3.3:2620663-2620682 | None:intergenic | 50.0% | |
| GCGTCTAAGTTACAACGGAC+AGG | + | chr3.3:2620365-2620384 | MS.gene67799:CDS | 50.0% | |
| GCTGTTGCCATGGGTAACAA+TGG | + | chr3.3:2620825-2620844 | MS.gene67799:CDS | 50.0% | |
| GGCATCTGTAAGTAGGATGG+TGG | - | chr3.3:2621100-2621119 | None:intergenic | 50.0% | |
| GTGAAAACATGGGTGCAGGT+GGG | + | chr3.3:2620847-2620866 | MS.gene67799:CDS | 50.0% | |
| GTTGTCTTCATCGGATGACG+AGG | - | chr3.3:2620526-2620545 | None:intergenic | 50.0% | |
| TCATGAACTTCGGGATGAGG+AGG | - | chr3.3:2620660-2620679 | None:intergenic | 50.0% | |
| TCCTTCCACTTGATCCTGCA+CGG | - | chr3.3:2621138-2621157 | None:intergenic | 50.0% | |
| TCGGGATGAGGAGGAGAATT+GGG | - | chr3.3:2620651-2620670 | None:intergenic | 50.0% | |
| TTCAACTCCTGTGGCAGAAC+CGG | + | chr3.3:2620602-2620621 | MS.gene67799:CDS | 50.0% | |
| TTCGGGATGAGGAGGAGAAT+TGG | - | chr3.3:2620652-2620671 | None:intergenic | 50.0% | |
| ! | ATTTGTTACGGAGAACCGGC+TGG | + | chr3.3:2621206-2621225 | MS.gene67799:CDS | 50.0% |
| ! | CCTGTCTCCCTTTTGGTATC+CGG | + | chr3.3:2619585-2619604 | MS.gene67799:intron | 50.0% |
| ! | GGACGCGGACCTTTTTCTAT+AGG | + | chr3.3:2620295-2620314 | MS.gene67799:CDS | 50.0% |
| !! | AGGCGGATTTTGGGCATCAT+CGG | - | chr3.3:2620706-2620725 | None:intergenic | 50.0% |
| !! | TCTGTAAGTAGGATGGTGGG+CGG | - | chr3.3:2621096-2621115 | None:intergenic | 50.0% |
| CCAGTATCTCGGCAGCAATC+AGG | - | chr3.3:2620473-2620492 | None:intergenic | 55.0% | |
| CCGGATACCAAAAGGGAGAC+AGG | - | chr3.3:2619588-2619607 | None:intergenic | 55.0% | |
| CCTCTCACGAACCGTTAGCT+CGG | - | chr3.3:2620427-2620446 | None:intergenic | 55.0% | |
| CCTGATTGCTGCCGAGATAC+TGG | + | chr3.3:2620470-2620489 | MS.gene67799:CDS | 55.0% | |
| CGAGATACTGGATCCCTTGG+AGG | + | chr3.3:2620482-2620501 | MS.gene67799:CDS | 55.0% | |
| CGGCAGCAATCAGGAAAGGA+GGG | - | chr3.3:2620464-2620483 | None:intergenic | 55.0% | |
| GAAATGCCGCTGGAGGAAGA+TGG | - | chr3.3:2621167-2621186 | None:intergenic | 55.0% | |
| GATGCTGCTGCTGTTGCCAT+GGG | + | chr3.3:2620816-2620835 | MS.gene67799:CDS | 55.0% | |
| GCACGGAAAGTCAAAGCCCA+TGG | - | chr3.3:2621121-2621140 | None:intergenic | 55.0% | |
| GCAGTATGAGACCTAACGGC+TGG | - | chr3.3:2620347-2620366 | None:intergenic | 55.0% | |
| GGACAGGGGCTGTTCTACAT+GGG | + | chr3.3:2620381-2620400 | MS.gene67799:CDS | 55.0% | |
| GGTGAAAACATGGGTGCAGG+TGG | + | chr3.3:2620846-2620865 | MS.gene67799:CDS | 55.0% | |
| GGTGCAACATCAACATCCGC+TGG | - | chr3.3:2620630-2620649 | None:intergenic | 55.0% | |
| GGTTCTGCCACAGGAGTTGA+AGG | - | chr3.3:2620603-2620622 | None:intergenic | 55.0% | |
| GTATGAGACCTAACGGCTGG+TGG | - | chr3.3:2620344-2620363 | None:intergenic | 55.0% | |
| GTATGCTAGGGAAGCTCGGA+TGG | + | chr3.3:2621281-2621300 | MS.gene67799:CDS | 55.0% | |
| TAGAGGCCATCTTCCTCCAG+CGG | + | chr3.3:2621158-2621177 | MS.gene67799:CDS | 55.0% | |
| TCATAGGAAGTGAGGGGACG+CGG | + | chr3.3:2620280-2620299 | MS.gene67799:CDS | 55.0% | |
| TCCGTGCAGGATCAAGTGGA+AGG | + | chr3.3:2621134-2621153 | MS.gene67799:CDS | 55.0% | |
| TCCTCCAGCGGCATTTCTCA+GGG | + | chr3.3:2621170-2621189 | MS.gene67799:CDS | 55.0% | |
| TCGGCAGCAATCAGGAAAGG+AGG | - | chr3.3:2620465-2620484 | None:intergenic | 55.0% | |
| TCTGCCACAGGAGTTGAAGG+AGG | - | chr3.3:2620600-2620619 | None:intergenic | 55.0% | |
| TGATGCTGCTGCTGTTGCCA+TGG | + | chr3.3:2620815-2620834 | MS.gene67799:CDS | 55.0% | |
| TGCACCTCCTTCAACTCCTG+TGG | + | chr3.3:2620593-2620612 | MS.gene67799:CDS | 55.0% | |
| TGCCGAGATACTGGATCCCT+TGG | + | chr3.3:2620479-2620498 | MS.gene67799:CDS | 55.0% | |
| TGGGCATCATCGGCATTGTG+TGG | - | chr3.3:2620696-2620715 | None:intergenic | 55.0% | |
| TTCCTCCAGCGGCATTTCTC+AGG | + | chr3.3:2621169-2621188 | MS.gene67799:CDS | 55.0% | |
| ! | ACAGGAGTTGAAGGAGGTGC+AGG | - | chr3.3:2620594-2620613 | None:intergenic | 55.0% |
| ! | CACTTTTCCCAACTGCCAGC+CGG | - | chr3.3:2621224-2621243 | None:intergenic | 55.0% |
| ! | TGGGCTTTGACTTTCCGTGC+AGG | + | chr3.3:2621121-2621140 | MS.gene67799:CDS | 55.0% |
| CATGGGTGCAGGTGGGAATG+TGG | + | chr3.3:2620854-2620873 | MS.gene67799:CDS | 60.0% | |
| CCGAGCTAACGGTTCGTGAG+AGG | + | chr3.3:2620424-2620443 | MS.gene67799:CDS | 60.0% | |
| CCTCCAGCGGCATTTCTCAG+GGG | + | chr3.3:2621171-2621190 | MS.gene67799:CDS | 60.0% | |
| CGGACAGGGGCTGTTCTACA+TGG | + | chr3.3:2620380-2620399 | MS.gene67799:CDS | 60.0% | |
| GAGCACTTCCACCAGCCGTT+AGG | + | chr3.3:2620333-2620352 | MS.gene67799:CDS | 60.0% | |
| TGTGGCAGAACCGGATCCAG+CGG | + | chr3.3:2620611-2620630 | MS.gene67799:CDS | 60.0% | |
| ! | GGAGTTGAAGGAGGTGCAGG+AGG | - | chr3.3:2620591-2620610 | None:intergenic | 60.0% |
| ACGGAGAACCGGCTGGCAGT+TGG | + | chr3.3:2621213-2621232 | MS.gene67799:CDS | 65.0% | |
| CAGCGGCATTTCTCAGGGGC+GGG | + | chr3.3:2621175-2621194 | MS.gene67799:CDS | 65.0% | |
| CCAGCGGCATTTCTCAGGGG+CGG | + | chr3.3:2621174-2621193 | MS.gene67799:CDS | 65.0% | |
| CCCCTGAGAAATGCCGCTGG+AGG | - | chr3.3:2621174-2621193 | None:intergenic | 65.0% | |
| CGGAGAACCGGCTGGCAGTT+GGG | + | chr3.3:2621214-2621233 | MS.gene67799:CDS | 65.0% | |
| GCTGGATCCGGTTCTGCCAC+AGG | - | chr3.3:2620612-2620631 | None:intergenic | 65.0% | |
| CCGCCCCTGAGAAATGCCGC+TGG | - | chr3.3:2621177-2621196 | None:intergenic | 70.0% | |
| CGGCATTTCTCAGGGGCGGG+TGG | + | chr3.3:2621178-2621197 | MS.gene67799:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 2619443 | 2621311 | 2619443 | ID=MS.gene67799 |
| chr3.3 | mRNA | 2619443 | 2621311 | 2619443 | ID=MS.gene67799.t1;Parent=MS.gene67799 |
| chr3.3 | exon | 2619443 | 2619493 | 2619443 | ID=MS.gene67799.t1.exon1;Parent=MS.gene67799.t1 |
| chr3.3 | CDS | 2619443 | 2619493 | 2619443 | ID=cds.MS.gene67799.t1;Parent=MS.gene67799.t1 |
| chr3.3 | exon | 2620180 | 2620944 | 2620180 | ID=MS.gene67799.t1.exon2;Parent=MS.gene67799.t1 |
| chr3.3 | CDS | 2620180 | 2620944 | 2620180 | ID=cds.MS.gene67799.t1;Parent=MS.gene67799.t1 |
| chr3.3 | exon | 2621048 | 2621311 | 2621048 | ID=MS.gene67799.t1.exon3;Parent=MS.gene67799.t1 |
| chr3.3 | CDS | 2621048 | 2621311 | 2621048 | ID=cds.MS.gene67799.t1;Parent=MS.gene67799.t1 |
| Gene Sequence |
| Protein sequence |
