AlfalfaGEDB | MS.gene67799

M. sativa cultivar XinJiangDaYe / MS.gene67799

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67799.t1	PNX89523.1	39.6	338	188	5	17	352	11	334	1.50E-10	77.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67799.t1	A0A2K3MFE8	39.6	338	188	5	17	352	11	334	1.1e-10	77.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene67799.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 121 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAAGAAATTATGTGG+AGG	0.696121	3.3:-2620723	None:intergenic
AACATCAATGCCAAGATCGA+TGG	0.539611	3.3:-2620559	None:intergenic
AACGATGAAGATGTGGAAGA+TGG	0.513612	3.3:+2620765	MS.gene67799:CDS
AAGTGGTTGTTGAAGTATGA+TGG	0.538484	3.3:-2620195	None:intergenic
AATGGTGAAAACATGGGTGC+AGG	0.619307	3.3:+2620843	MS.gene67799:CDS
AATTATGTGGAGGCGGATTT+TGG	0.148513	3.3:-2620713	None:intergenic
ACAGGAGTTGAAGGAGGTGC+AGG	0.491094	3.3:-2620591	None:intergenic
ACATCAACATCCGCTGGATC+CGG	0.472816	3.3:-2620621	None:intergenic
ACCCATATGTTATGTATGCT+AGG	0.529159	3.3:+2621268	MS.gene67799:CDS
ACGGAGAACCGGCTGGCAGT+TGG	0.492128	3.3:+2621213	MS.gene67799:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATATTGCAGAGTGACA+AGG	-	chr3.3:2619821-2619840	None:intergenic	30.0%
AGTACACATTATCGTAGATA+CGG	-	chr3.3:2619925-2619944	None:intergenic	30.0%
TATAATTCATACTCCTCCAA+GGG	-	chr3.3:2620498-2620517	None:intergenic	30.0%
TTGTTACTAAACTTTGAGTG+TGG	+	chr3.3:2619522-2619541	MS.gene67799:intron	30.0%
AAAATCTACCGGATACCAAA+AGG	-	chr3.3:2619596-2619615	None:intergenic	35.0%
AAATCTACCGGATACCAAAA+GGG	-	chr3.3:2619595-2619614	None:intergenic	35.0%
AAGTGGTTGTTGAAGTATGA+TGG	-	chr3.3:2620198-2620217	None:intergenic	35.0%
ACCCATATGTTATGTATGCT+AGG	+	chr3.3:2621268-2621287	MS.gene67799:CDS	35.0%
ACTCCTTAGCCTATAGAAAA+AGG	-	chr3.3:2620307-2620326	None:intergenic	35.0%
ATACTGCGTCTAAGTTACAA+CGG	+	chr3.3:2620360-2620379	MS.gene67799:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	2619443	2621311	2619443	ID=MS.gene67799
chr3.3	mRNA	2619443	2621311	2619443	ID=MS.gene67799.t1;Parent=MS.gene67799
chr3.3	exon	2619443	2619493	2619443	ID=MS.gene67799.t1.exon1;Parent=MS.gene67799.t1
chr3.3	CDS	2619443	2619493	2619443	ID=cds.MS.gene67799.t1;Parent=MS.gene67799.t1
chr3.3	exon	2620180	2620944	2620180	ID=MS.gene67799.t1.exon2;Parent=MS.gene67799.t1
chr3.3	CDS	2620180	2620944	2620180	ID=cds.MS.gene67799.t1;Parent=MS.gene67799.t1
chr3.3	exon	2621048	2621311	2621048	ID=MS.gene67799.t1.exon3;Parent=MS.gene67799.t1
chr3.3	CDS	2621048	2621311	2621048	ID=cds.MS.gene67799.t1;Parent=MS.gene67799.t1

Gene Sequence

>MS.gene67799

ATGGCCGCGCTTACATTCAGGAAGTTCTTCACAACAATCGATCCAGACAAGGTAAGTGTGTCTTAATATTCACTAACTTTTGTTACTAAACTTTGAGTGTGGAGTAGATTTTTTAATCAAAAGTATGTTGATTGATTATTTTCCTGTCTCCCTTTTGGTATCCGGTAGATTTTGCATGGCTTCATTTGTTGTTACATGTTTAAGGATTTTGACTATGTTTGCCTTCTTGTTGGTTGGATGATGATGAATCTGTAAGTATAATTTATTTCCACTATTATGCACACACAAGAAACCGTATCTAAGATTTTGTGTACTCTGATTGCTAGATTGATAATTCCTGTTTGTTGTCACTCTGTAATGTTAGTTTGATATTTTCCTTGTCACTCTGCAATATATTTTGACCATGTTTGCCTTGTTGTTGGTTGGATGATGATGAATTGATAACTGTATTTTTTTCAACTATTATGCACACAAAAAAACCGTATCTACGATAATGTGTACTCTGATTGTTACTTTGATATTCCCAGTTTGTTGTCACTCTGTAATGTTAGTTTGAAATTTCCAGTTTGATGTCACTCTGTAAATCACATCGTCGTCAAATGACATCTCAATAAACATCAGTTGTATCTTAAGTAAATTATTTAAAAAAGAACACAGGTTTGTTATTTTCATGAGATATAGTATCTTTCAAATCATTTGTTGTAAAATGACTAATGAAGTTGTCACTTGTAATGTAGGATGAGGCTGATATTCCATCATACTTCAACAACCACTTTGGTGATGAACTACGACACAGAGTCTGGTTAGAAGACACAAGAGGTTCGAGGTTTGGTGTTTTCATAGGAAGTGAGGGGACGCGGACCTTTTTCTATAGGCTAAGGAGTTTGCTGGAGCACTTCCACCAGCCGTTAGGTCTCATACTGCGTCTAAGTTACAACGGACAGGGGCTGTTCTACATGGGTGCGCTTACACTCGACATGACCGAGCTAACGGTTCGTGAGAGGCGTACTTATGAACACCCTCCTTTCCTGATTGCTGCCGAGATACTGGATCCCTTGGAGGAGTATGAATTATACAATACCTCGTCATCCGATGAAGACAACGACGACGATGATTCCATCGATCTTGGCATTGATGTTGATGTTCCTCCTGCACCTCCTTCAACTCCTGTGGCAGAACCGGATCCAGCGGATGTTGATGTTGCACCCAATTCTCCTCCTCATCCCGAAGTTCATGATGCCAATCAACAACCACACAATGCCGATGATGCCCAAAATCCGCCTCCACATAATTTCTTTGATTTTGCTGCTGCCATGGATATCAACGATGAAGATGTGGAAGATGGAGCACAAAATCCTCCGCATAACTTCTTTGATGCTGCTGCTGTTGCCATGGGTAACAATGGTGAAAACATGGGTGCAGGTGGGAATGTGGCTAATAATGGGAGAGTGGAGAGCTGTGTTGTCAGACTTGCAGAATACATGGTGAAGACTAGCAATCTGGTAGGTGAATTGCATAACTGCTAATGCATAATGTAATTACTGTTATATAGTTTTTGGTAGATATGTCTAACGCCTGTTTTAAATTGTTATCATTTGCATGCAGTACCTACCAAGAAGATTTGTTGCACGAGTGTTTGGGAATGCAACACCGCCCACCATCCTACTTACAGATGCCATGGGCTTTGACTTTCCGTGCAGGATCAAGTGGAAGGATAGAGGCCATCTTCCTCCAGCGGCATTTCTCAGGGGCGGGTGGAAGAGATTTGTTACGGAGAACCGGCTGGCAGTTGGGAAAAGTGTTAGGTTGTCTGTCAACTTAGACAACCCATATGTTATGTATGCTAGGGAAGCTCGGATGGAGATTTGA

Protein sequence

>MS.gene67799.t1

MAALTFRKFFTTIDPDKDEADIPSYFNNHFGDELRHRVWLEDTRGSRFGVFIGSEGTRTFFYRLRSLLEHFHQPLGLILRLSYNGQGLFYMGALTLDMTELTVRERRTYEHPPFLIAAEILDPLEEYELYNTSSSDEDNDDDDSIDLGIDVDVPPAPPSTPVAEPDPADVDVAPNSPPHPEVHDANQQPHNADDAQNPPPHNFFDFAAAMDINDEDVEDGAQNPPHNFFDAAAVAMGNNGENMGAGGNVANNGRVESCVVRLAEYMVKTSNLYLPRRFVARVFGNATPPTILLTDAMGFDFPCRIKWKDRGHLPPAAFLRGGWKRFVTENRLAVGKSVRLSVNLDNPYVMYAREARMEI