Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67973.t1 | XP_024634655.1 | 75.8 | 207 | 35 | 1 | 8 | 214 | 1 | 192 | 1.10E-69 | 273.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67973.t1 | Q5JMK6 | 43.9 | 98 | 55 | 0 | 108 | 205 | 137 | 234 | 5.3e-12 | 72.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67973.t1 | A0A2K3MUT1 | 56.5 | 193 | 81 | 3 | 14 | 205 | 1 | 191 | 4.2e-42 | 181.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene67973.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67973.t1 | MTR_3g465280 | 68.000 | 75 | 20 | 3 | 22 | 95 | 9 | 80 | 1.45e-25 | 101 |
MS.gene67973.t1 | MTR_3g465280 | 42.017 | 119 | 59 | 5 | 1 | 117 | 83 | 193 | 3.20e-17 | 78.6 |
MS.gene67973.t1 | MTR_4g079500 | 43.158 | 95 | 54 | 0 | 108 | 202 | 194 | 288 | 1.90e-17 | 79.7 |
MS.gene67973.t1 | MTR_2g090900 | 43.158 | 95 | 54 | 0 | 108 | 202 | 191 | 285 | 3.86e-17 | 79.0 |
MS.gene67973.t1 | MTR_2g090900 | 43.158 | 95 | 54 | 0 | 108 | 202 | 191 | 285 | 5.08e-17 | 78.6 |
MS.gene67973.t1 | MTR_5g075390 | 33.071 | 127 | 77 | 1 | 82 | 200 | 125 | 251 | 1.77e-11 | 62.8 |
MS.gene67973.t1 | MTR_3g467120 | 38.298 | 94 | 58 | 0 | 107 | 200 | 176 | 269 | 3.89e-11 | 62.0 |
MS.gene67973.t1 | MTR_4g072090 | 35.922 | 103 | 66 | 0 | 108 | 210 | 360 | 462 | 8.21e-11 | 61.2 |
MS.gene67973.t1 | MTR_2g099050 | 36.458 | 96 | 61 | 0 | 107 | 202 | 220 | 315 | 8.65e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67973.t1 | AT2G42380 | 40.179 | 112 | 67 | 0 | 91 | 202 | 169 | 280 | 1.83e-18 | 82.4 |
MS.gene67973.t1 | AT3G58120 | 40.708 | 113 | 66 | 1 | 90 | 202 | 185 | 296 | 1.90e-18 | 82.4 |
MS.gene67973.t1 | AT2G42380 | 41.667 | 96 | 56 | 0 | 91 | 186 | 169 | 264 | 5.43e-16 | 75.1 |
MS.gene67973.t1 | AT3G58120 | 42.268 | 97 | 55 | 1 | 90 | 186 | 185 | 280 | 6.15e-16 | 75.1 |
MS.gene67973.t1 | AT2G42380 | 35.714 | 112 | 61 | 1 | 91 | 202 | 169 | 269 | 1.60e-13 | 68.6 |
MS.gene67973.t1 | AT5G07160 | 40.860 | 93 | 55 | 0 | 108 | 200 | 48 | 140 | 3.85e-12 | 62.4 |
MS.gene67973.t1 | AT1G43700 | 39.362 | 94 | 57 | 0 | 107 | 200 | 193 | 286 | 1.52e-11 | 63.2 |
MS.gene67973.t1 | AT2G40620 | 38.298 | 94 | 58 | 0 | 107 | 200 | 147 | 240 | 4.18e-11 | 62.0 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 7.54e-11 | 61.2 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 9.63e-11 | 60.8 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 9.63e-11 | 60.8 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 9.63e-11 | 60.8 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 9.63e-11 | 60.8 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 9.63e-11 | 60.8 |
MS.gene67973.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 9.63e-11 | 60.8 |
Find 45 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCTATTTCAAGTCTTAAT+TGG | 0.226858 | 6.4:-10968448 | None:intergenic |
GCTCGATTATATTGCTGATT+TGG | 0.235809 | 6.4:+10967790 | MS.gene67973:CDS |
TTCGATCGTGGCAACCTTCT+TGG | 0.258760 | 6.4:+10967035 | MS.gene67973:CDS |
GCATGACCAAGATTTGATTT+TGG | 0.261059 | 6.4:-10967145 | None:intergenic |
TTTGTACCAGTCATTCTCTT+TGG | 0.270280 | 6.4:-10966932 | None:intergenic |
CTAACCATGTTTGATTTCTT+AGG | 0.274809 | 6.4:-10966983 | None:intergenic |
GTATACCGTTTGAGCCTCTT+TGG | 0.278573 | 6.4:-10967244 | None:intergenic |
TTGTACCAGTCATTCTCTTT+GGG | 0.334410 | 6.4:-10966931 | None:intergenic |
ATAAGAGAGCTGAGGTGAAT+AGG | 0.348904 | 6.4:+10968602 | MS.gene67973:CDS |
AGTGTACCAAAATCAAATCT+TGG | 0.459311 | 6.4:+10967139 | MS.gene67973:CDS |
TATTGCTGATTTGGAGCGGA+TGG | 0.492832 | 6.4:+10967799 | MS.gene67973:CDS |
TCTTAATTGGTGGTGTTCCA+TGG | 0.506174 | 6.4:-10968435 | None:intergenic |
CTATTTCAAGTCTTAATTGG+TGG | 0.506362 | 6.4:-10968445 | None:intergenic |
TGGATCCAAAGAGGCTCAAA+CGG | 0.511736 | 6.4:+10967239 | MS.gene67973:CDS |
AAACAAGAGGCGAGTAGCAG+TGG | 0.525757 | 6.4:+10967076 | MS.gene67973:CDS |
GAGCTGAGGTGAATAGGCTG+AGG | 0.526514 | 6.4:+10968608 | MS.gene67973:CDS |
GGCATCCCAAAGAGAATGAC+TGG | 0.538746 | 6.4:+10966926 | MS.gene67973:CDS |
GTGCAGAAATTCGATTTGCT+AGG | 0.542578 | 6.4:-10967748 | None:intergenic |
AACATGTTGCACACAGAAGA+GGG | 0.550817 | 6.4:+10966953 | MS.gene67973:CDS |
TTGCACACAGAAGAGGGACC+TGG | 0.552875 | 6.4:+10966959 | MS.gene67973:CDS |
ATGTTTGATTTCTTAGGCCC+AGG | 0.557475 | 6.4:-10966977 | None:intergenic |
AGACTTCAACTTGTGGGCGA+AGG | 0.559195 | 6.4:-10968388 | None:intergenic |
GATTGAGAATAAGAGAGCTG+AGG | 0.559603 | 6.4:+10968594 | MS.gene67973:CDS |
GCATCTGCATGTGTTGGTGT+TGG | 0.564639 | 6.4:+10967196 | MS.gene67973:CDS |
AGGTCGATGCTCTTCCAAGA+AGG | 0.590978 | 6.4:-10967049 | None:intergenic |
ATGGTTAGACCCTCCTCACA+TGG | 0.592096 | 6.4:+10966998 | MS.gene67973:CDS |
ATGCACTACCGCCACTGATG+TGG | 0.592583 | 6.4:-10967177 | None:intergenic |
TGCACACAGAAGAGGGACCT+GGG | 0.596481 | 6.4:+10966960 | MS.gene67973:CDS |
TTGCTGAAGCACAAAACAAG+AGG | 0.602002 | 6.4:+10968650 | MS.gene67973:CDS |
AAACATGTTGCACACAGAAG+AGG | 0.606246 | 6.4:+10966952 | MS.gene67973:CDS |
GGTAGTGCATCTGCATGTGT+TGG | 0.606657 | 6.4:+10967190 | MS.gene67973:CDS |
TCAGCAGTGGTTGTTGACCA+TGG | 0.606900 | 6.4:+10968418 | MS.gene67973:CDS |
AGCTGAGGTGAATAGGCTGA+GGG | 0.614102 | 6.4:+10968609 | MS.gene67973:CDS |
CGTCATCAACATTTCGATCG+TGG | 0.618192 | 6.4:+10967023 | MS.gene67973:CDS |
ATTATATTGCTGATTTGGAG+CGG | 0.619255 | 6.4:+10967795 | MS.gene67973:CDS |
AAAGAAAGGATACTTCAAGA+AGG | 0.624481 | 6.4:+10968479 | MS.gene67973:CDS |
CATCGACCTCGGTAAACAAG+AGG | 0.645201 | 6.4:+10967063 | MS.gene67973:CDS |
GCTGAGAAGAACCACATCAG+TGG | 0.645935 | 6.4:+10967166 | MS.gene67973:CDS |
GATGACGATCCATGTGAGGA+GGG | 0.655591 | 6.4:-10967007 | None:intergenic |
TACTCGCCTCTTGTTTACCG+AGG | 0.656052 | 6.4:-10967069 | None:intergenic |
GAGAAGAACCACATCAGTGG+CGG | 0.665888 | 6.4:+10967169 | MS.gene67973:CDS |
TCTTGGAAGAGCATCGACCT+CGG | 0.683098 | 6.4:+10967052 | MS.gene67973:CDS |
TGATGACGATCCATGTGAGG+AGG | 0.690718 | 6.4:-10967008 | None:intergenic |
TGGGCCTAAGAAATCAAACA+TGG | 0.705886 | 6.4:+10966979 | MS.gene67973:CDS |
TGTTGATGACGATCCATGTG+AGG | 0.709103 | 6.4:-10967011 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAATAAATCTATATGT+TGG | + | chr6.4:10967522-10967541 | MS.gene67973:intron | 10.0% |
!! | CTGAAAAAAAAATTAATAAT+GGG | + | chr6.4:10967405-10967424 | MS.gene67973:intron | 10.0% |
!! | AAAATTGAAACAAAATATCT+CGG | + | chr6.4:10967652-10967671 | MS.gene67973:intron | 15.0% |
!! | GCTGAAAAAAAAATTAATAA+TGG | + | chr6.4:10967404-10967423 | MS.gene67973:intron | 15.0% |
!!! | AAAAAAAAATTAATAATGGG+AGG | + | chr6.4:10967408-10967427 | MS.gene67973:intron | 15.0% |
!!! | GATTTTTTTCAATTTCAATT+TGG | - | chr6.4:10967998-10968017 | None:intergenic | 15.0% |
!! | ACTCATACATGATAAAAATA+TGG | + | chr6.4:10968794-10968813 | MS.gene67973:intron | 20.0% |
!! | GTCGATTATTTGTATTAATT+TGG | + | chr6.4:10968097-10968116 | MS.gene67973:intron | 20.0% |
!!! | ATATTATATCGATTATGTGT+AGG | - | chr6.4:10967688-10967707 | None:intergenic | 20.0% |
!!! | CAAATTCGTTTTTTGTTTTA+AGG | - | chr6.4:10969016-10969035 | None:intergenic | 20.0% |
!!! | TTATTAGTTTTTTTGTCTTG+TGG | - | chr6.4:10967115-10967134 | None:intergenic | 20.0% |
! | ACATAGTCATGTGAAATAAA+TGG | - | chr6.4:10968560-10968579 | None:intergenic | 25.0% |
! | ATAGATCGATTATGATTGAA+TGG | - | chr6.4:10968158-10968177 | None:intergenic | 25.0% |
! | CAAATCAACTATATTAGTCA+GGG | - | chr6.4:10967597-10967616 | None:intergenic | 25.0% |
! | CAGTTGGCAAATTAAAAATA+TGG | + | chr6.4:10967304-10967323 | MS.gene67973:intron | 25.0% |
! | CATAACACTAAAAGTTTGAT+GGG | + | chr6.4:10967346-10967365 | MS.gene67973:intron | 25.0% |
! | TCAAATCAACTATATTAGTC+AGG | - | chr6.4:10967598-10967617 | None:intergenic | 25.0% |
! | TCATAACACTAAAAGTTTGA+TGG | + | chr6.4:10967345-10967364 | MS.gene67973:intron | 25.0% |
! | TCTTGATCTGATTATTTGAA+TGG | + | chr6.4:10968236-10968255 | MS.gene67973:intron | 25.0% |
!! | AAAGTGAGAGTATATATAGA+AGG | + | chr6.4:10968871-10968890 | MS.gene67973:intron | 25.0% |
!! | CAAATTGAAATTCTTTGAAG+TGG | - | chr6.4:10968078-10968097 | None:intergenic | 25.0% |
!!! | ATATGTTGGTTTAAGTTTCA+TGG | + | chr6.4:10967536-10967555 | MS.gene67973:intron | 25.0% |
!!! | ATGACTATGTTTATTTTCAG+TGG | + | chr6.4:10968570-10968589 | MS.gene67973:intron | 25.0% |
!!! | GATTTTTTTTTTGTACATGC+AGG | + | chr6.4:10968352-10968371 | MS.gene67973:intron | 25.0% |
AAAGAAAGGATACTTCAAGA+AGG | + | chr6.4:10968479-10968498 | MS.gene67973:CDS | 30.0% | |
AGTGTACCAAAATCAAATCT+TGG | + | chr6.4:10967139-10967158 | MS.gene67973:CDS | 30.0% | |
AGTTTGATGGGAATAGTATT+TGG | + | chr6.4:10967358-10967377 | MS.gene67973:intron | 30.0% | |
CATTCTCATCAAAAGACTAT+AGG | - | chr6.4:10967952-10967971 | None:intergenic | 30.0% | |
GAAAATACACACAAACACAA+AGG | - | chr6.4:10968824-10968843 | None:intergenic | 30.0% | |
TAGTATACCGATATATGTTG+CGG | + | chr6.4:10969040-10969059 | MS.gene67973:intron | 30.0% | |
TATAATTATATGTGTGCTCG+CGG | + | chr6.4:10968953-10968972 | MS.gene67973:intron | 30.0% | |
TCACGTATCAACTTCTAATT+TGG | + | chr6.4:10968178-10968197 | MS.gene67973:intron | 30.0% | |
TGTTTGATCCAAAACAACAA+GGG | + | chr6.4:10968274-10968293 | MS.gene67973:intron | 30.0% | |
TTGTTTGATCCAAAACAACA+AGG | + | chr6.4:10968273-10968292 | MS.gene67973:intron | 30.0% | |
! | ACTCTTCACAAGTTTTTGTT+TGG | - | chr6.4:10968323-10968342 | None:intergenic | 30.0% |
! | CAGCTATTTCAAGTCTTAAT+TGG | - | chr6.4:10968451-10968470 | None:intergenic | 30.0% |
! | CTAACCATGTTTGATTTCTT+AGG | - | chr6.4:10966986-10967005 | None:intergenic | 30.0% |
! | CTATTTCAAGTCTTAATTGG+TGG | - | chr6.4:10968448-10968467 | None:intergenic | 30.0% |
! | TTTTGTAGACTTCAACTTGT+GGG | - | chr6.4:10968397-10968416 | None:intergenic | 30.0% |
! | TTTTGTCTTCTGTTGATCTT+AGG | + | chr6.4:10967723-10967742 | MS.gene67973:intron | 30.0% |
! | TTTTTGTAGACTTCAACTTG+TGG | - | chr6.4:10968398-10968417 | None:intergenic | 30.0% |
!! | AGTTTTTGTTTGGGTAGATA+TGG | - | chr6.4:10968313-10968332 | None:intergenic | 30.0% |
!! | ATTATATTGCTGATTTGGAG+CGG | + | chr6.4:10967795-10967814 | MS.gene67973:CDS | 30.0% |
!! | CTCTTCACAAGTTTTTGTTT+GGG | - | chr6.4:10968322-10968341 | None:intergenic | 30.0% |
!!! | AATGGGAGGTTGTTTTATTT+AGG | + | chr6.4:10967422-10967441 | MS.gene67973:intron | 30.0% |
!!! | TGTTTTATTTAGGCTTGTCA+TGG | + | chr6.4:10967432-10967451 | MS.gene67973:intron | 30.0% |
AAGTCTACAAAAATCAGCAG+TGG | + | chr6.4:10968405-10968424 | MS.gene67973:CDS | 35.0% | |
TAGCTGTACGAGAAAAAGAA+AGG | + | chr6.4:10968465-10968484 | MS.gene67973:CDS | 35.0% | |
TGAGCAACACAAAAATCAGT+TGG | + | chr6.4:10967288-10967307 | MS.gene67973:intron | 35.0% | |
TGATCAAGCAACACAAAAAC+TGG | + | chr6.4:10967219-10967238 | MS.gene67973:CDS | 35.0% | |
TTGTACCAGTCATTCTCTTT+GGG | - | chr6.4:10966934-10966953 | None:intergenic | 35.0% | |
TTTGTACCAGTCATTCTCTT+TGG | - | chr6.4:10966935-10966954 | None:intergenic | 35.0% | |
TTTGTTTGGGTAGATATGGT+GGG | - | chr6.4:10968309-10968328 | None:intergenic | 35.0% | |
! | GCTCGATTATATTGCTGATT+TGG | + | chr6.4:10967790-10967809 | MS.gene67973:CDS | 35.0% |
!! | GCATGACCAAGATTTGATTT+TGG | - | chr6.4:10967148-10967167 | None:intergenic | 35.0% |
!! | TTTTGTTTGGGTAGATATGG+TGG | - | chr6.4:10968310-10968329 | None:intergenic | 35.0% |
!!! | ATATGGATCCCTTGTTGTTT+TGG | - | chr6.4:10968285-10968304 | None:intergenic | 35.0% |
AAACATGTTGCACACAGAAG+AGG | + | chr6.4:10966952-10966971 | MS.gene67973:CDS | 40.0% | |
AACATGTTGCACACAGAAGA+GGG | + | chr6.4:10966953-10966972 | MS.gene67973:CDS | 40.0% | |
AGACTATAGGCTTTCACGAT+CGG | - | chr6.4:10967939-10967958 | None:intergenic | 40.0% | |
ATAAGAGAGCTGAGGTGAAT+AGG | + | chr6.4:10968602-10968621 | MS.gene67973:CDS | 40.0% | |
CACAAAAACTGGATCCAAAG+AGG | + | chr6.4:10967230-10967249 | MS.gene67973:CDS | 40.0% | |
GATTGAGAATAAGAGAGCTG+AGG | + | chr6.4:10968594-10968613 | MS.gene67973:CDS | 40.0% | |
GCGGATGGAAAAATATTTGC+AGG | + | chr6.4:10967814-10967833 | MS.gene67973:CDS | 40.0% | |
TGGGCCTAAGAAATCAAACA+TGG | + | chr6.4:10966979-10966998 | MS.gene67973:CDS | 40.0% | |
TTGCTGAAGCACAAAACAAG+AGG | + | chr6.4:10968650-10968669 | MS.gene67973:CDS | 40.0% | |
! | ATGTTTGATTTCTTAGGCCC+AGG | - | chr6.4:10966980-10966999 | None:intergenic | 40.0% |
! | GTGCAGAAATTCGATTTGCT+AGG | - | chr6.4:10967751-10967770 | None:intergenic | 40.0% |
!! | TCTTAATTGGTGGTGTTCCA+TGG | - | chr6.4:10968438-10968457 | None:intergenic | 40.0% |
!! | TTCTTTGAAGTGGTAACCAG+CGG | - | chr6.4:10968068-10968087 | None:intergenic | 40.0% |
ACCGATATATGTTGCGGTTG+TGG | + | chr6.4:10969046-10969065 | MS.gene67973:intron | 45.0% | |
ACTATAGGCTTTCACGATCG+GGG | - | chr6.4:10967937-10967956 | None:intergenic | 45.0% | |
CGTCATCAACATTTCGATCG+TGG | + | chr6.4:10967023-10967042 | MS.gene67973:CDS | 45.0% | |
GACTATAGGCTTTCACGATC+GGG | - | chr6.4:10967938-10967957 | None:intergenic | 45.0% | |
GCCACAACCGCAACATATAT+CGG | - | chr6.4:10969050-10969069 | None:intergenic | 45.0% | |
GTATACCGTTTGAGCCTCTT+TGG | - | chr6.4:10967247-10967266 | None:intergenic | 45.0% | |
TGGATCCAAAGAGGCTCAAA+CGG | + | chr6.4:10967239-10967258 | MS.gene67973:CDS | 45.0% | |
! | GGGTAGATATGGTGGGAATA+TGG | - | chr6.4:10968302-10968321 | None:intergenic | 45.0% |
!! | TATTGCTGATTTGGAGCGGA+TGG | + | chr6.4:10967799-10967818 | MS.gene67973:CDS | 45.0% |
!! | TGTTGATGACGATCCATGTG+AGG | - | chr6.4:10967014-10967033 | None:intergenic | 45.0% |
!!! | TTTTTCAAAATTTATAATTA+GGG | + | chr6.4:10968745-10968764 | MS.gene67973:intron | 5.0% |
!!! | TTTTTTCAAAATTTATAATT+AGG | + | chr6.4:10968744-10968763 | MS.gene67973:intron | 5.0% |
AAACAAGAGGCGAGTAGCAG+TGG | + | chr6.4:10967076-10967095 | MS.gene67973:CDS | 50.0% | |
AGACTTCAACTTGTGGGCGA+AGG | - | chr6.4:10968391-10968410 | None:intergenic | 50.0% | |
AGCTGAGGTGAATAGGCTGA+GGG | + | chr6.4:10968609-10968628 | MS.gene67973:CDS | 50.0% | |
AGGTCGATGCTCTTCCAAGA+AGG | - | chr6.4:10967052-10967071 | None:intergenic | 50.0% | |
ATGGTTAGACCCTCCTCACA+TGG | + | chr6.4:10966998-10967017 | MS.gene67973:CDS | 50.0% | |
ATGTTGCGGTTGTGGCATGT+GGG | + | chr6.4:10969054-10969073 | MS.gene67973:intron | 50.0% | |
CATCGACCTCGGTAAACAAG+AGG | + | chr6.4:10967063-10967082 | MS.gene67973:CDS | 50.0% | |
GAGAAGAACCACATCAGTGG+CGG | + | chr6.4:10967169-10967188 | MS.gene67973:CDS | 50.0% | |
GATGACGATCCATGTGAGGA+GGG | - | chr6.4:10967010-10967029 | None:intergenic | 50.0% | |
GCTGAGAAGAACCACATCAG+TGG | + | chr6.4:10967166-10967185 | MS.gene67973:CDS | 50.0% | |
GGCATCCCAAAGAGAATGAC+TGG | + | chr6.4:10966926-10966945 | MS.gene67973:CDS | 50.0% | |
GGTAGTGCATCTGCATGTGT+TGG | + | chr6.4:10967190-10967209 | MS.gene67973:CDS | 50.0% | |
TATGTTGCGGTTGTGGCATG+TGG | + | chr6.4:10969053-10969072 | MS.gene67973:intron | 50.0% | |
TCAGCAGTGGTTGTTGACCA+TGG | + | chr6.4:10968418-10968437 | MS.gene67973:CDS | 50.0% | |
TTCGATCGTGGCAACCTTCT+TGG | + | chr6.4:10967035-10967054 | MS.gene67973:CDS | 50.0% | |
! | GCATCTGCATGTGTTGGTGT+TGG | + | chr6.4:10967196-10967215 | MS.gene67973:CDS | 50.0% |
! | TACTCGCCTCTTGTTTACCG+AGG | - | chr6.4:10967072-10967091 | None:intergenic | 50.0% |
! | TGATGACGATCCATGTGAGG+AGG | - | chr6.4:10967011-10967030 | None:intergenic | 50.0% |
!! | TCTTGGAAGAGCATCGACCT+CGG | + | chr6.4:10967052-10967071 | MS.gene67973:CDS | 50.0% |
ATGCACTACCGCCACTGATG+TGG | - | chr6.4:10967180-10967199 | None:intergenic | 55.0% | |
GAGCTGAGGTGAATAGGCTG+AGG | + | chr6.4:10968608-10968627 | MS.gene67973:CDS | 55.0% | |
TGCACACAGAAGAGGGACCT+GGG | + | chr6.4:10966960-10966979 | MS.gene67973:CDS | 55.0% | |
TGCTCTACATGTAGAGCCGC+TGG | + | chr6.4:10968049-10968068 | MS.gene67973:intron | 55.0% | |
TTGCACACAGAAGAGGGACC+TGG | + | chr6.4:10966959-10966978 | MS.gene67973:CDS | 55.0% | |
CGGTTGTGGCATGTGGGTAG+GGG | + | chr6.4:10969060-10969079 | MS.gene67973:intron | 60.0% | |
GCGGTTGTGGCATGTGGGTA+GGG | + | chr6.4:10969059-10969078 | MS.gene67973:intron | 60.0% | |
TGCGGTTGTGGCATGTGGGT+AGG | + | chr6.4:10969058-10969077 | MS.gene67973:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 10966920 | 10969089 | 10966920 | ID=MS.gene67973 |
chr6.4 | mRNA | 10966920 | 10969089 | 10966920 | ID=MS.gene67973.t1;Parent=MS.gene67973 |
chr6.4 | exon | 10966920 | 10967260 | 10966920 | ID=MS.gene67973.t1.exon1;Parent=MS.gene67973.t1 |
chr6.4 | CDS | 10966920 | 10967260 | 10966920 | ID=cds.MS.gene67973.t1;Parent=MS.gene67973.t1 |
chr6.4 | exon | 10967745 | 10967835 | 10967745 | ID=MS.gene67973.t1.exon2;Parent=MS.gene67973.t1 |
chr6.4 | CDS | 10967745 | 10967835 | 10967745 | ID=cds.MS.gene67973.t1;Parent=MS.gene67973.t1 |
chr6.4 | exon | 10968374 | 10968500 | 10968374 | ID=MS.gene67973.t1.exon3;Parent=MS.gene67973.t1 |
chr6.4 | CDS | 10968374 | 10968500 | 10968374 | ID=cds.MS.gene67973.t1;Parent=MS.gene67973.t1 |
chr6.4 | exon | 10968590 | 10968671 | 10968590 | ID=MS.gene67973.t1.exon4;Parent=MS.gene67973.t1 |
chr6.4 | CDS | 10968590 | 10968671 | 10968590 | ID=cds.MS.gene67973.t1;Parent=MS.gene67973.t1 |
chr6.4 | exon | 10969080 | 10969089 | 10969080 | ID=MS.gene67973.t1.exon5;Parent=MS.gene67973.t1 |
chr6.4 | CDS | 10969080 | 10969089 | 10969080 | ID=cds.MS.gene67973.t1;Parent=MS.gene67973.t1 |
Gene Sequence |
Protein sequence |