AlfalfaGEDB | MS.gene67992

M. sativa cultivar XinJiangDaYe / MS.gene67992

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67992.t1	XP_024632961.1	86.5	311	18	3	1	287	1	311	3.40E-130	474.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67992.t1	Q9SZL8	27.1	255	173	5	42	290	72	319	3.2e-20	100.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67992.t1	A0A072TE13	80.5	303	36	3	1	287	1	296	1.0e-128	469.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene67992.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67992.t1	MTR_0558s0020	86.469	303	18	3	1	287	1	296	0.0	529
MS.gene67992.t1	MTR_1g083640	84.965	286	19	3	1	262	1	286	5.42e-176	487
MS.gene67992.t1	MTR_8g446020	73.597	303	17	4	1	287	1	256	6.55e-151	422
MS.gene67992.t1	MTR_2g014100	85.714	245	18	3	1	228	1	245	1.08e-146	412
MS.gene67992.t1	MTR_6g090505	86.087	230	16	2	73	286	1	230	3.86e-141	402
MS.gene67992.t1	MTR_0337s0040	69.030	268	21	4	1	252	1	222	1.99e-119	342
MS.gene67992.t1	MTR_3g008240	80.476	210	18	3	1	194	1	203	1.56e-114	328
MS.gene67992.t1	MTR_4g040430	79.524	210	15	4	1	194	1	198	4.60e-111	319
MS.gene67992.t1	MTR_5g071590	73.333	180	27	3	1	159	1	180	2.04e-88	261
MS.gene67992.t1	MTR_0019s0290	78.947	152	16	2	90	225	9	160	1.16e-78	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67992.t1	AT4G38180	27.059	255	173	5	42	290	72	319	5.19e-21	93.6
MS.gene67992.t1	AT5G28530	25.101	247	165	7	48	279	60	301	5.00e-14	72.8
MS.gene67992.t1	AT5G28530	25.101	247	165	7	48	279	60	301	5.37e-14	72.4
MS.gene67992.t1	AT5G28530	25.101	247	165	7	48	279	60	301	5.37e-14	72.4
MS.gene67992.t1	AT1G10240	23.504	234	175	4	57	287	62	294	1.60e-11	65.1
MS.gene67992.t1	AT1G10240	23.504	234	175	4	57	287	62	294	1.60e-11	65.1

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Find 38 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCCCTGGTTTATGTAA+TGG	0.529222	6.4:-11311099	None:intergenic
AACAAACAAGGTTTCAAGAA+GGG	0.554561	6.4:+11310949	MS.gene67992:CDS
AACAATCAATATCGCCCATT+AGG	0.430510	6.4:+11311501	MS.gene67992:CDS
AATTCGTCAAAAGGAGATGG+TGG	0.636402	6.4:+11311293	MS.gene67992:CDS
ACAAAATAAGAAATCAGATA+AGG	0.530342	6.4:+11310903	MS.gene67992:CDS
ACAAACTCAATAAAGTTGTT+AGG	0.316138	6.4:-11310985	None:intergenic
AGAACGTCTTATGAAGTTAT+GGG	0.466325	6.4:+11311204	MS.gene67992:CDS
ATAACACTGGATTCTCTATT+AGG	0.309117	6.4:+11310854	MS.gene67992:CDS
ATGTCTATAAGATATATAGA+TGG	0.423693	6.4:+11311058	MS.gene67992:CDS
CAACTAGATTATTCTCTATT+TGG	0.147857	6.4:+11311444	MS.gene67992:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAACAAGGTTTCAAGAA+GGG	+	chr6.4:11310949-11310968	MS.gene67992:CDS	30.0%
AGAACGTCTTATGAAGTTAT+GGG	+	chr6.4:11311204-11311223	MS.gene67992:CDS	30.0%
ATAACACTGGATTCTCTATT+AGG	+	chr6.4:11310854-11310873	MS.gene67992:CDS	30.0%
CGTTATGTTTGTAACAAACA+AGG	+	chr6.4:11310937-11310956	MS.gene67992:CDS	30.0%
GGTAATTATGCATATAACAC+TGG	+	chr6.4:11310841-11310860	MS.gene67992:CDS	30.0%
GTGAAAGTGAAAGAAAAACT+TGG	+	chr6.4:11311006-11311025	MS.gene67992:CDS	30.0%
TAACAAACAAGGTTTCAAGA+AGG	+	chr6.4:11310948-11310967	MS.gene67992:CDS	30.0%
TAAGATATATAGATGGGATG+TGG	+	chr6.4:11311065-11311084	MS.gene67992:CDS	30.0%
TCCATGATTCTTTATTGCTA+GGG	-	chr6.4:11310777-11310796	None:intergenic	30.0%
TCTAATGACAATTCGTCAAA+AGG	+	chr6.4:11311284-11311303	MS.gene67992:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	11310664	11311622	11310664	ID=MS.gene67992
chr6.4	mRNA	11310664	11311622	11310664	ID=MS.gene67992.t1;Parent=MS.gene67992
chr6.4	exon	11310664	11311522	11310664	ID=MS.gene67992.t1.exon1;Parent=MS.gene67992.t1
chr6.4	CDS	11310664	11311522	11310664	ID=cds.MS.gene67992.t1;Parent=MS.gene67992.t1
chr6.4	exon	11311606	11311622	11311606	ID=MS.gene67992.t1.exon2;Parent=MS.gene67992.t1
chr6.4	CDS	11311606	11311622	11311606	ID=cds.MS.gene67992.t1;Parent=MS.gene67992.t1

Gene Sequence

>MS.gene67992

ATGGATTTGATATCAACTTCATCTGAGAGTGAACAATTGACTGTTGAAACTTCATCACTGATTCTTGCTGATAGTTCACTGATTCATGCTGATAGTTCTCAATGTTACTCCCCTAGCAATAAAGAATCATGGAAGTCTTTAGTCTTTGAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTCTCTATTAGGAGTATGTTGAAGTCGAAGAACAATTCACAAAATAAGAAATCAGATAAGGTACATTATGTGCGTTATGTTTGTAACAAACAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAACAACTTTATTGAGTTTGTGAAAGTGAAAGAAAAACTTGGAATAATTTTGAAGTTGGATGAAGTTTTGAATGTCTATAAGATATATAGATGGGATGTGGCTCACTGTCATCCATTACATAAACCAGGGCATTTGTGTTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTCGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGGTTTTCGGACTTAAAGAACTATCTAATGACAATTCGTCAAAAGGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATGAAGGTCTCTCGAAACCATCTTTTTACTATGATATCCAAGTTGATGCTGCACAAGACATAGCTAGCATTTTTTGGGCATATGGAATTATGCAACTAGATTATTCTCTATTTGGCGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATCAATATCGCCCATTAGGTTAGTATTTTGTACTTCTCTCAGGTTTTAAATTAGTGTTTACTTTCATTATGTTGTATTTTGTTCTGGCATGGATAGTATAGGTAGGAGTACCTTTTGA

Protein sequence

>MS.gene67992.t1

MDLISTSSESEQLTVETSSLILADSSLIHADSSQCYSPSNKESWKSLVFESIKEIEDFYGNYAYNTGFSIRSMLKSKNNSQNKKSDKVHYVRYVCNKQGFKKGSLLNPNNFIEFVKVKEKLGIILKLDEVLNVYKIYRWDVAHCHPLHKPGHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTIRQKEMVVGEATVIQEFFRNEGLSKPSFYYDIQVDAAQDIASIFWAYGIMQLDYSLFGDVISFDTTYRTNNQYRPLGRSTF