Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68056.t1 | XP_003612158.1 | 93.3 | 283 | 17 | 2 | 1 | 283 | 22 | 302 | 9.60E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68056.t1 | Q6YBV1 | 45.1 | 273 | 115 | 6 | 4 | 274 | 35 | 274 | 1.1e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68056.t1 | B7UCW4 | 93.3 | 283 | 17 | 2 | 1 | 283 | 22 | 302 | 6.9e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68056.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68056.t1 | MTR_5g021930 | 96.466 | 283 | 8 | 2 | 1 | 283 | 22 | 302 | 0.0 | 565 |
| MS.gene68056.t1 | MTR_4g084550 | 67.164 | 67 | 21 | 1 | 5 | 71 | 60 | 125 | 9.73e-27 | 103 |
| MS.gene68056.t1 | MTR_8g107210 | 70.769 | 65 | 18 | 1 | 7 | 71 | 94 | 157 | 1.52e-25 | 104 |
| MS.gene68056.t1 | MTR_5g081990 | 59.459 | 74 | 26 | 2 | 9 | 79 | 33 | 105 | 1.89e-24 | 97.4 |
| MS.gene68056.t1 | MTR_7g060630 | 67.692 | 65 | 20 | 1 | 7 | 71 | 6 | 69 | 6.43e-24 | 96.7 |
| MS.gene68056.t1 | MTR_4g063735 | 68.254 | 63 | 19 | 1 | 9 | 71 | 25 | 86 | 1.22e-23 | 97.1 |
| MS.gene68056.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.64e-22 | 93.2 |
| MS.gene68056.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 2.07e-22 | 93.2 |
| MS.gene68056.t1 | MTR_8g095580 | 78.723 | 47 | 10 | 0 | 25 | 71 | 97 | 143 | 2.44e-19 | 83.2 |
| MS.gene68056.t1 | MTR_3g088485 | 76.596 | 47 | 11 | 0 | 25 | 71 | 95 | 141 | 3.98e-19 | 82.8 |
| MS.gene68056.t1 | MTR_7g025010 | 48.438 | 64 | 32 | 1 | 9 | 72 | 47 | 109 | 1.10e-14 | 74.3 |
| MS.gene68056.t1 | MTR_2g015000 | 44.928 | 69 | 37 | 1 | 3 | 71 | 49 | 116 | 4.41e-14 | 72.4 |
| MS.gene68056.t1 | MTR_7g066060 | 87.879 | 33 | 4 | 0 | 54 | 86 | 465 | 497 | 7.73e-13 | 68.6 |
| MS.gene68056.t1 | MTR_4g088070 | 43.548 | 62 | 34 | 1 | 9 | 70 | 29 | 89 | 1.42e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68056.t1 | AT2G17950 | 42.085 | 259 | 102 | 9 | 4 | 236 | 33 | 269 | 2.13e-46 | 157 |
| MS.gene68056.t1 | AT5G59340 | 69.697 | 66 | 19 | 1 | 6 | 71 | 11 | 75 | 1.01e-25 | 102 |
| MS.gene68056.t1 | AT3G18010 | 70.769 | 65 | 18 | 1 | 7 | 71 | 74 | 137 | 1.02e-25 | 104 |
| MS.gene68056.t1 | AT2G28610 | 65.152 | 66 | 22 | 1 | 6 | 71 | 5 | 69 | 2.43e-23 | 95.9 |
| MS.gene68056.t1 | AT3G11260 | 65.079 | 63 | 21 | 1 | 9 | 71 | 24 | 85 | 4.25e-23 | 94.0 |
| MS.gene68056.t1 | AT5G05770 | 62.319 | 69 | 25 | 1 | 9 | 77 | 29 | 96 | 5.06e-23 | 91.7 |
| MS.gene68056.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.20e-22 | 92.8 |
| MS.gene68056.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 7.95e-22 | 92.0 |
| MS.gene68056.t1 | AT2G01500 | 61.017 | 59 | 22 | 1 | 6 | 64 | 58 | 115 | 5.20e-19 | 84.7 |
| MS.gene68056.t1 | AT5G45980 | 52.381 | 63 | 29 | 1 | 9 | 71 | 55 | 116 | 5.48e-15 | 74.3 |
| MS.gene68056.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.17e-14 | 73.9 |
| MS.gene68056.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.20e-14 | 73.6 |
| MS.gene68056.t1 | AT1G20700 | 39.130 | 69 | 41 | 1 | 9 | 77 | 33 | 100 | 7.90e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5.3:+12716217 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5.3:+12716080 | None:intergenic |
| CTATTATTGCTGCTGCTAAT+TGG | 0.230551 | 5.3:-12717032 | MS.gene68056:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5.3:+12715897 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5.3:+12716173 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 5.3:+12716131 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5.3:+12717207 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5.3:-12716107 | MS.gene68056:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5.3:+12717267 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5.3:-12716779 | MS.gene68056:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5.3:-12716011 | MS.gene68056:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5.3:+12716062 | None:intergenic |
| GCAATAATAGTATTGTTGTT+TGG | 0.407919 | 5.3:+12717045 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5.3:-12716785 | MS.gene68056:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5.3:-12717180 | MS.gene68056:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5.3:+12717006 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5.3:-12715923 | MS.gene68056:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 5.3:-12716952 | MS.gene68056:intron |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5.3:-12715952 | MS.gene68056:CDS |
| ATGAAATGTTGTAATTAGAA+AGG | 0.429559 | 5.3:+12716959 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5.3:+12716063 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5.3:-12717110 | MS.gene68056:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5.3:+12717062 | None:intergenic |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 5.3:+12716780 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5.3:+12717063 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5.3:-12715930 | MS.gene68056:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 5.3:-12716135 | MS.gene68056:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5.3:-12716794 | MS.gene68056:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5.3:+12716015 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5.3:-12717259 | MS.gene68056:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 5.3:-12716813 | MS.gene68056:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 5.3:-12716212 | MS.gene68056:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5.3:-12717240 | MS.gene68056:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5.3:-12717168 | MS.gene68056:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5.3:-12716245 | MS.gene68056:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 5.3:-12716266 | MS.gene68056:CDS |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5.3:-12716050 | MS.gene68056:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5.3:-12715984 | MS.gene68056:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5.3:-12716217 | MS.gene68056:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5.3:-12715972 | MS.gene68056:CDS |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5.3:+12716054 | None:intergenic |
| AATATGGATCAACATGATGA+TGG | 0.557603 | 5.3:+12716189 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5.3:+12715935 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5.3:+12716053 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5.3:-12716803 | MS.gene68056:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5.3:-12716004 | MS.gene68056:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5.3:-12716008 | MS.gene68056:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5.3:-12716221 | MS.gene68056:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5.3:-12716765 | MS.gene68056:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5.3:-12717194 | MS.gene68056:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5.3:+12715922 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 5.3:+12716210 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5.3:-12717296 | MS.gene68056:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 5.3:+12716209 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5.3:+12716066 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5.3:+12716067 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5.3:-12716119 | MS.gene68056:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5.3:-12717293 | MS.gene68056:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | 5.3:-12716047 | MS.gene68056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5.3:12716523-12716542 | None:intergenic | 10.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5.3:12716524-12716543 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5.3:12716815-12716834 | MS.gene68056:CDS | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5.3:12716659-12716678 | MS.gene68056:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5.3:12716719-12716738 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | + | chr5.3:12716290-12716309 | None:intergenic | 15.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5.3:12717191-12717210 | MS.gene68056:CDS | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5.3:12716346-12716365 | None:intergenic | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+AGG | + | chr5.3:12716246-12716265 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5.3:12716690-12716709 | None:intergenic | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5.3:12715943-12715962 | MS.gene68056:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5.3:12716053-12716072 | MS.gene68056:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | + | chr5.3:12716160-12716179 | None:intergenic | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5.3:12717190-12717209 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | - | chr5.3:12716917-12716936 | MS.gene68056:intron | 25.0% |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5.3:12717067-12717086 | MS.gene68056:CDS | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5.3:12715962-12715981 | MS.gene68056:CDS | 30.0% | |
| AATATGGATCAACATGATGA+TGG | + | chr5.3:12717016-12717035 | None:intergenic | 30.0% | |
| AATTACAACATTTCATCTGC+TGG | - | chr5.3:12716250-12716269 | MS.gene68056:CDS | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5.3:12717083-12717102 | MS.gene68056:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5.3:12715938-12715957 | None:intergenic | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5.3:12717095-12717114 | MS.gene68056:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5.3:12717194-12717213 | MS.gene68056:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5.3:12717074-12717093 | None:intergenic | 30.0% | |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5.3:12716701-12716720 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5.3:12717032-12717051 | None:intergenic | 30.0% | |
| TTTGTGTGTGTGTTTATGTA+GGG | - | chr5.3:12716355-12716374 | MS.gene68056:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5.3:12716677-12716696 | None:intergenic | 30.0% |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | - | chr5.3:12716354-12716373 | MS.gene68056:intron | 30.0% |
| !! | AAAAGCATTAACTCTCTTGT+TGG | + | chr5.3:12716788-12716807 | None:intergenic | 30.0% |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5.3:12716034-12716053 | MS.gene68056:CDS | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5.3:12716585-12716604 | MS.gene68056:intron | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5.3:12717198-12717217 | MS.gene68056:CDS | 35.0% | |
| CATATCCATAGTTACCAATC+TGG | + | chr5.3:12716425-12716444 | None:intergenic | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5.3:12716092-12716111 | MS.gene68056:CDS | 35.0% | |
| CTATTATTGCTGCTGCTAAT+TGG | - | chr5.3:12716170-12716189 | MS.gene68056:CDS | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5.3:12716620-12716639 | None:intergenic | 35.0% | |
| GCTACATACACATTAGACAA+AGG | + | chr5.3:12716555-12716574 | None:intergenic | 35.0% | |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5.3:12716456-12716475 | None:intergenic | 35.0% |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5.3:12716423-12716442 | MS.gene68056:intron | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5.3:12716452-12716471 | MS.gene68056:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5.3:12716455-12716474 | None:intergenic | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5.3:12716451-12716470 | MS.gene68056:intron | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5.3:12716199-12716218 | None:intergenic | 35.0% |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5.3:12716142-12716161 | None:intergenic | 35.0% |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5.3:12717125-12717144 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5.3:12716008-12716027 | MS.gene68056:CDS | 40.0% | |
| AGCATTAACTCTCTTGTTGG+TGG | + | chr5.3:12716785-12716804 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5.3:12716981-12717000 | MS.gene68056:CDS | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5.3:12717138-12717157 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5.3:12717152-12717171 | MS.gene68056:CDS | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5.3:12717142-12717161 | None:intergenic | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5.3:12717272-12717291 | MS.gene68056:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5.3:12717230-12717249 | MS.gene68056:CDS | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5.3:12717151-12717170 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5.3:12717143-12717162 | None:intergenic | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5.3:12716022-12716041 | MS.gene68056:CDS | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5.3:12717152-12717171 | None:intergenic | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5.3:12716389-12716408 | MS.gene68056:intron | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5.3:12716143-12716162 | None:intergenic | 40.0% |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5.3:12716990-12717009 | MS.gene68056:CDS | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5.3:12717283-12717302 | None:intergenic | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5.3:12717270-12717289 | None:intergenic | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5.3:12716408-12716427 | MS.gene68056:intron | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5.3:12717139-12717158 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5.3:12717155-12717174 | MS.gene68056:CDS | 45.0% | |
| CATGGATGCATGAACCATGA+TGG | + | chr5.3:12716602-12716621 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5.3:12716985-12717004 | MS.gene68056:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5.3:12716988-12717007 | None:intergenic | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5.3:12715998-12716017 | None:intergenic | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5.3:12715909-12715928 | MS.gene68056:CDS | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5.3:12715906-12715925 | MS.gene68056:CDS | 45.0% | |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5.3:12716957-12716976 | MS.gene68056:CDS | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5.3:12716399-12716418 | MS.gene68056:intron | 45.0% | |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5.3:12716437-12716456 | MS.gene68056:intron | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5.3:12717218-12717237 | MS.gene68056:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5.3:12717250-12717269 | MS.gene68056:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5.3:12716417-12716436 | MS.gene68056:intron | 45.0% |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5.3:12716936-12716955 | MS.gene68056:intron | 45.0% |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5.3:12716595-12716614 | None:intergenic | 45.0% |
| !!! | CTTTTAAATTAAAATTAAAA+TGG | + | chr5.3:12716892-12716911 | None:intergenic | 5.0% |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5.3:12717279-12717298 | MS.gene68056:CDS | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5.3:12716995-12717014 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5.3:12716996-12717015 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12715902 | 12717322 | 12715902 | ID=MS.gene68056 |
| chr5.3 | mRNA | 12715902 | 12717322 | 12715902 | ID=MS.gene68056.t1;Parent=MS.gene68056 |
| chr5.3 | exon | 12716953 | 12717322 | 12716953 | ID=MS.gene68056.t1.exon1;Parent=MS.gene68056.t1 |
| chr5.3 | CDS | 12716953 | 12717322 | 12716953 | ID=cds.MS.gene68056.t1;Parent=MS.gene68056.t1 |
| chr5.3 | exon | 12716751 | 12716848 | 12716751 | ID=MS.gene68056.t1.exon2;Parent=MS.gene68056.t1 |
| chr5.3 | CDS | 12716751 | 12716848 | 12716751 | ID=cds.MS.gene68056.t1;Parent=MS.gene68056.t1 |
| chr5.3 | exon | 12715902 | 12716285 | 12715902 | ID=MS.gene68056.t1.exon3;Parent=MS.gene68056.t1 |
| chr5.3 | CDS | 12715902 | 12716285 | 12715902 | ID=cds.MS.gene68056.t1;Parent=MS.gene68056.t1 |
| Gene Sequence |
| Protein sequence |
