Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68150.t1 | XP_003603927.1 | 81.5 | 455 | 63 | 8 | 1 | 452 | 1 | 437 | 1.80E-194 | 688.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68150.t1 | P70371 | 34.5 | 139 | 74 | 5 | 326 | 448 | 279 | 416 | 4.9e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68150.t1 | G7J729 | 81.5 | 455 | 63 | 8 | 1 | 452 | 1 | 437 | 1.3e-194 | 688.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68150.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68150.t1 | MTR_3g116690 | 81.538 | 455 | 63 | 8 | 1 | 452 | 1 | 437 | 0.0 | 676 |
| MS.gene68150.t1 | MTR_3g117790 | 81.538 | 455 | 63 | 8 | 1 | 452 | 1 | 437 | 0.0 | 668 |
| MS.gene68150.t1 | MTR_3g117790 | 79.560 | 455 | 63 | 9 | 1 | 452 | 1 | 428 | 0.0 | 641 |
| MS.gene68150.t1 | MTR_3g014420 | 81.667 | 120 | 21 | 1 | 194 | 313 | 17 | 135 | 6.02e-61 | 195 |
| MS.gene68150.t1 | MTR_3g467090 | 32.443 | 262 | 120 | 5 | 216 | 448 | 387 | 620 | 2.52e-30 | 124 |
| MS.gene68150.t1 | MTR_3g467090 | 33.333 | 213 | 113 | 9 | 6 | 214 | 8 | 195 | 1.43e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68150.t1 | AT5G58340 | 26.440 | 382 | 240 | 15 | 89 | 446 | 81 | 445 | 1.65e-13 | 72.8 |
| MS.gene68150.t1 | AT5G58340 | 26.440 | 382 | 240 | 15 | 89 | 446 | 81 | 445 | 1.65e-13 | 72.8 |
| MS.gene68150.t1 | AT1G15720 | 28.689 | 366 | 193 | 16 | 89 | 446 | 81 | 386 | 5.82e-13 | 70.5 |
Find 110 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATCATTGTTAACATTT+AGG | 0.186976 | 3.1:-92685837 | None:intergenic |
| AAAGAAATAACCAACCATTA+TGG | 0.218651 | 3.1:-92685011 | None:intergenic |
| CTGCTTGGAGGTAGTGTTTA+GGG | 0.228026 | 3.1:-92684741 | None:intergenic |
| CTCTTGAATGGCTTTCCTTC+TGG | 0.254243 | 3.1:-92684908 | None:intergenic |
| TCCAAGCAGTTGACAGAATA+TGG | 0.254939 | 3.1:+92684755 | MS.gene68150:CDS |
| TAAGTGAATCCCCGTTCTTT+TGG | 0.273307 | 3.1:-92685651 | None:intergenic |
| TAACTCCAAAATTGAGATTC+TGG | 0.273343 | 3.1:+92684818 | MS.gene68150:CDS |
| GTCTGGCATACAAATAGAAT+TGG | 0.288931 | 3.1:-92685719 | None:intergenic |
| TGAGTACGAGCAGAACTATT+TGG | 0.294065 | 3.1:-92685919 | None:intergenic |
| GCATCGCTAATAGGTGGATT+AGG | 0.298127 | 3.1:-92684637 | None:intergenic |
| AAAGACAATGGAAGGCTTAA+AGG | 0.299896 | 3.1:+92685541 | MS.gene68150:CDS |
| ACTGCTTGGAGGTAGTGTTT+AGG | 0.310482 | 3.1:-92684742 | None:intergenic |
| TATAGAGAGTGAGCATATTA+AGG | 0.313329 | 3.1:+92684438 | MS.gene68150:CDS |
| TCAGAATTGGAGAAGGAAAC+TGG | 0.354877 | 3.1:+92686915 | MS.gene68150:intron |
| AAGAAATAACCAACCATTAT+GGG | 0.366017 | 3.1:-92685010 | None:intergenic |
| CATCTTCCGATTATCGATTT+CGG | 0.378562 | 3.1:-92684488 | None:intergenic |
| GATGATGAACATCACTTTGA+TGG | 0.379549 | 3.1:-92685882 | None:intergenic |
| CATCGCTAATAGGTGGATTA+GGG | 0.381491 | 3.1:-92684636 | None:intergenic |
| CCATTCATCGATAGATGCTT+TGG | 0.387362 | 3.1:-92684551 | None:intergenic |
| GATTTCATGGCATCGCTAAT+AGG | 0.391784 | 3.1:-92684646 | None:intergenic |
| GTAGACATAAGCAGATTTCA+TGG | 0.396640 | 3.1:-92684659 | None:intergenic |
| GGAAAGGTTAGGGTGGTGTT+TGG | 0.397081 | 3.1:+92684387 | MS.gene68150:CDS |
| TGTTGTTGTTGTTGAGGTAA+TGG | 0.400125 | 3.1:+92685579 | MS.gene68150:CDS |
| TTTGTATGCCAGACATTGTA+AGG | 0.401380 | 3.1:+92685728 | MS.gene68150:CDS |
| GAAGAAGCTTTCTCCGTTGA+AGG | 0.405658 | 3.1:+92686460 | MS.gene68150:CDS |
| CACCTGCACCTGCTGCTTCA+AGG | 0.406135 | 3.1:-92684708 | None:intergenic |
| GGAAGTTGCCTTCGTAAGAT+TGG | 0.411891 | 3.1:-92685860 | None:intergenic |
| TGGTGTTTGGAATTCGTTCT+TGG | 0.411975 | 3.1:+92684400 | MS.gene68150:CDS |
| GCTCAAAATCAATCCCATAA+TGG | 0.413594 | 3.1:+92684997 | MS.gene68150:CDS |
| TTAACGAGGCCCAAAAGAAC+GGG | 0.420375 | 3.1:+92685641 | MS.gene68150:CDS |
| TCCATATTCTGTCAACTGCT+TGG | 0.421745 | 3.1:-92684756 | None:intergenic |
| GGTGGATTAGGGTTTGAAGA+AGG | 0.424767 | 3.1:-92684625 | None:intergenic |
| TTTAGGCAAGCATGTGGGTT+GGG | 0.424815 | 3.1:-92685820 | None:intergenic |
| AAAACTACTTCTAATTGATT+GGG | 0.433610 | 3.1:+92684600 | MS.gene68150:CDS |
| GCATGTATCGTGAGTTGAAA+AGG | 0.433870 | 3.1:-92684861 | None:intergenic |
| GCAAATAACTTCTTCCCTCC+AGG | 0.443932 | 3.1:-92684795 | None:intergenic |
| TGGACAACAACTCATCTTCA+AGG | 0.456297 | 3.1:-92684531 | None:intergenic |
| AATGGGAAGAGGATAATCTA+AGG | 0.459156 | 3.1:+92686534 | MS.gene68150:CDS |
| GGAGAAAGCTTCTTCCTCTC+TGG | 0.461592 | 3.1:-92686452 | None:intergenic |
| CACAAATCAGGAGCCACAAA+TGG | 0.462731 | 3.1:+92685771 | MS.gene68150:CDS |
| TACTACTGTTGTTGTTGTTG+AGG | 0.467147 | 3.1:+92685573 | MS.gene68150:CDS |
| TGGAGAAATTTGAAGCGGTC+TGG | 0.467731 | 3.1:+92687073 | MS.gene68150:CDS |
| ATTTGAAAATGGAAAGGTTA+GGG | 0.470688 | 3.1:+92684377 | None:intergenic |
| ACATCAGACCTTACAATGTC+TGG | 0.471043 | 3.1:-92685736 | None:intergenic |
| GTACATTTGCATCTTTACTC+TGG | 0.471288 | 3.1:-92685798 | None:intergenic |
| TGATTCGATCGATGGATTGC+AGG | 0.471350 | 3.1:+92686388 | MS.gene68150:CDS |
| AATTTGAAAATGGAAAGGTT+AGG | 0.473595 | 3.1:+92684376 | None:intergenic |
| GAAGATGAAAATGCTTCTGT+TGG | 0.479184 | 3.1:+92684504 | MS.gene68150:CDS |
| TACCTTGAAGCAGCAGGTGC+AGG | 0.480680 | 3.1:+92684706 | MS.gene68150:CDS |
| GCAACAGAGTGAAGAAAGGA+AGG | 0.481758 | 3.1:-92684973 | None:intergenic |
| GGCAATTGAAGACACAAATC+AGG | 0.483604 | 3.1:+92685759 | MS.gene68150:CDS |
| CAGTCACCGAAATCGATAAT+CGG | 0.485524 | 3.1:+92684482 | MS.gene68150:CDS |
| GATGCTCGGAATAACCTTGT+AGG | 0.496320 | 3.1:+92684949 | MS.gene68150:CDS |
| TCTGGCATACAAATAGAATT+GGG | 0.497185 | 3.1:-92685718 | None:intergenic |
| ATATTCTGTCAACTGCTTGG+AGG | 0.502799 | 3.1:-92684753 | None:intergenic |
| CTATTTGGTTTCATCAAGCT+AGG | 0.506498 | 3.1:-92685904 | None:intergenic |
| AAGTACATACAGTTTAATTC+CGG | 0.506549 | 3.1:-92686558 | None:intergenic |
| ATGAAAATGCTTCTGTTGGA+AGG | 0.511456 | 3.1:+92684508 | MS.gene68150:CDS |
| CCAAAGCATCTATCGATGAA+TGG | 0.516478 | 3.1:+92684551 | MS.gene68150:CDS |
| TGAAAAGGGAAGCATCGATT+CGG | 0.518415 | 3.1:-92684846 | None:intergenic |
| TTGTCTTTGTCGAGTTCCAT+CGG | 0.525502 | 3.1:-92685526 | None:intergenic |
| GTGGATTAGGGTTTGAAGAA+GGG | 0.529616 | 3.1:-92684624 | None:intergenic |
| AGCAGCAACAGAGTGAAGAA+AGG | 0.530298 | 3.1:-92684977 | None:intergenic |
| CATGTATCGTGAGTTGAAAA+GGG | 0.536326 | 3.1:-92684860 | None:intergenic |
| TAGTGGGATGATTCGATCGA+TGG | 0.537188 | 3.1:+92686380 | MS.gene68150:intron |
| GATTGCAGGCAGGAACATCA+AGG | 0.543132 | 3.1:+92686402 | MS.gene68150:CDS |
| TTCACTTAAATGCAATTCTG+TGG | 0.545122 | 3.1:+92685666 | MS.gene68150:CDS |
| TCGATCGATGGATTGCAGGC+AGG | 0.547141 | 3.1:+92686392 | MS.gene68150:CDS |
| TTTGGTTCATACTCCTTCAA+CGG | 0.551515 | 3.1:-92686473 | None:intergenic |
| AAAATGGAGTCAATGGGAAG+AGG | 0.556320 | 3.1:+92686523 | MS.gene68150:CDS |
| ATTTAGGCAAGCATGTGGGT+TGG | 0.556821 | 3.1:-92685821 | None:intergenic |
| AAAGGAATTTGAAAATGGAA+AGG | 0.559315 | 3.1:+92684371 | None:intergenic |
| GAACCGTAGGTTTCAAAACC+TGG | 0.560313 | 3.1:+92684777 | MS.gene68150:CDS |
| ATGATGAACATCACTTTGAT+GGG | 0.562151 | 3.1:-92685881 | None:intergenic |
| GAAGAGGATAATCTAAGGAC+CGG | 0.564580 | 3.1:+92686539 | MS.gene68150:CDS |
| GTTAACGAGGCCCAAAAGAA+CGG | 0.567267 | 3.1:+92685640 | MS.gene68150:CDS |
| GAAGAAAGGAAGGGCCTACA+AGG | 0.570430 | 3.1:-92684963 | None:intergenic |
| CTTCATTGTCTGATACCAGA+AGG | 0.585689 | 3.1:+92684893 | MS.gene68150:CDS |
| AACTCGACAAAGACAATGGA+AGG | 0.587275 | 3.1:+92685533 | MS.gene68150:CDS |
| CAATGGAAGGCTTAAAGGCA+AGG | 0.588132 | 3.1:+92685546 | MS.gene68150:CDS |
| TTGCTGTGGAATGTACCGTT+AGG | 0.589094 | 3.1:+92684683 | MS.gene68150:CDS |
| TTCATGGCATCGCTAATAGG+TGG | 0.591268 | 3.1:-92684643 | None:intergenic |
| AGGTTGATTTGAAAGACAAG+TGG | 0.593616 | 3.1:+92687053 | MS.gene68150:intron |
| TTGACAGAATATGGAACCGT+AGG | 0.599653 | 3.1:+92684764 | MS.gene68150:CDS |
| TGACTCTTTGCCAGTTAACG+AGG | 0.601690 | 3.1:+92685627 | MS.gene68150:CDS |
| TGCTTATGTCTACATTGCTG+TGG | 0.602167 | 3.1:+92684669 | MS.gene68150:CDS |
| TTAACATTTAGGCAAGCATG+TGG | 0.604145 | 3.1:-92685826 | None:intergenic |
| CTTGAAGCAGCAGGTGCAGG+TGG | 0.604795 | 3.1:+92684709 | MS.gene68150:CDS |
| TCTCATATTAGAGTCTCCGA+TGG | 0.606409 | 3.1:+92685510 | MS.gene68150:intron |
| ATTGCAGGCAGGAACATCAA+GGG | 0.616311 | 3.1:+92686403 | MS.gene68150:CDS |
| GTTAGGTACCTTGAAGCAGC+AGG | 0.617125 | 3.1:+92684700 | MS.gene68150:CDS |
| ATTATCGATTTCGGTGACTG+AGG | 0.617150 | 3.1:-92684479 | None:intergenic |
| ATGGAACTCGACAAAGACAA+TGG | 0.617169 | 3.1:+92685529 | MS.gene68150:CDS |
| TGAAAATGGAAAGGTTAGGG+TGG | 0.628807 | 3.1:+92684380 | None:intergenic |
| CCTAAATGTTAACAATGATG+AGG | 0.630277 | 3.1:+92685837 | MS.gene68150:CDS |
| TGCTGCTTCAAGGTACCTAA+CGG | 0.634086 | 3.1:-92684698 | None:intergenic |
| ATACAAATAGAATTGGGCAC+AGG | 0.635848 | 3.1:-92685712 | None:intergenic |
| ATGGATGCTTGAACTTCTCG+AGG | 0.640307 | 3.1:+92684570 | MS.gene68150:CDS |
| TTGCAGGCAGGAACATCAAG+GGG | 0.642905 | 3.1:+92686404 | MS.gene68150:CDS |
| TTCGTTTGCGTAGTCCAGAG+AGG | 0.651598 | 3.1:+92686438 | MS.gene68150:CDS |
| CAACAGAGTGAAGAAAGGAA+GGG | 0.656227 | 3.1:-92684972 | None:intergenic |
| CGTAGGTTTCAAAACCTGGA+GGG | 0.661614 | 3.1:+92684781 | MS.gene68150:CDS |
| CAGAAGGAAAGCCATTCAAG+AGG | 0.668057 | 3.1:+92684909 | MS.gene68150:CDS |
| TAACATTTAGGCAAGCATGT+GGG | 0.675244 | 3.1:-92685825 | None:intergenic |
| ACAAGTGGAGAAATTTGAAG+CGG | 0.678726 | 3.1:+92687068 | MS.gene68150:CDS |
| AGACATTGTAAGGTCTGATG+TGG | 0.687030 | 3.1:+92685738 | MS.gene68150:CDS |
| CCGTAGGTTTCAAAACCTGG+AGG | 0.690526 | 3.1:+92684780 | MS.gene68150:CDS |
| TAGTTCTGCTCGTACTCACG+AGG | 0.692042 | 3.1:+92685924 | MS.gene68150:CDS |
| TGATGAGGCCAATCTTACGA+AGG | 0.699645 | 3.1:+92685852 | MS.gene68150:CDS |
| TAACGAGGCCCAAAAGAACG+GGG | 0.712659 | 3.1:+92685642 | MS.gene68150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTGAATAGTAAAA+TGG | - | chr3.1:92686792-92686811 | None:intergenic | 10.0% |
| !! | AAATATTATAGTAACTTGAT+TGG | - | chr3.1:92686591-92686610 | None:intergenic | 15.0% |
| !! | TAAAATAAGCAATAAAATCA+AGG | - | chr3.1:92686358-92686377 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTTTTGTATTTC+TGG | + | chr3.1:92685956-92685975 | MS.gene68150:intron | 15.0% |
| !! | AAAAACTACTTCTAATTGAT+TGG | + | chr3.1:92684599-92684618 | MS.gene68150:CDS | 20.0% |
| !! | AAAAATGTATGACAAAGTAA+AGG | - | chr3.1:92686681-92686700 | None:intergenic | 20.0% |
| !! | AAAACTACTTCTAATTGATT+GGG | + | chr3.1:92684600-92684619 | MS.gene68150:CDS | 20.0% |
| !! | AAAGGAGAAAGAAAAAAAAA+TGG | + | chr3.1:92686507-92686526 | MS.gene68150:CDS | 20.0% |
| !! | AACCAAAAAATATTACGAAA+AGG | + | chr3.1:92686489-92686508 | MS.gene68150:CDS | 20.0% |
| !! | AATTGAAGCATAAATAGTTA+GGG | - | chr3.1:92686817-92686836 | None:intergenic | 20.0% |
| !!! | ATACAATGTTTTTTCGTTTT+TGG | + | chr3.1:92686628-92686647 | MS.gene68150:intron | 20.0% |
| !!! | CTTTTTTCTTTTTTCAGAAT+TGG | + | chr3.1:92686902-92686921 | MS.gene68150:intron | 20.0% |
| !!! | TATTGCTTATTTTATGTAGT+GGG | + | chr3.1:92686364-92686383 | MS.gene68150:intron | 20.0% |
| !!! | TGAATCAAATTTTGTTTATC+AGG | + | chr3.1:92687033-92687052 | MS.gene68150:intron | 20.0% |
| !!! | TTATTGCTTATTTTATGTAG+TGG | + | chr3.1:92686363-92686382 | MS.gene68150:intron | 20.0% |
| !!! | TTTTTAGAGTAAAAAGGAAT+GGG | - | chr3.1:92686270-92686289 | None:intergenic | 20.0% |
| ! | AAAGAAATAACCAACCATTA+TGG | - | chr3.1:92685014-92685033 | None:intergenic | 25.0% |
| ! | AAAGTAAAGGTAAAAGCAAA+AGG | - | chr3.1:92686668-92686687 | None:intergenic | 25.0% |
| ! | AACAACAACAACAGAAAAAA+GGG | - | chr3.1:92685039-92685058 | None:intergenic | 25.0% |
| ! | AAGAAATAACCAACCATTAT+GGG | - | chr3.1:92685013-92685032 | None:intergenic | 25.0% |
| ! | AAGTACATACAGTTTAATTC+CGG | - | chr3.1:92686561-92686580 | None:intergenic | 25.0% |
| ! | AATTTCATTGCAAAATGCAT+AGG | + | chr3.1:92685341-92685360 | MS.gene68150:intron | 25.0% |
| ! | AGAAAAAAAAATGGAGTCAA+TGG | + | chr3.1:92686516-92686535 | MS.gene68150:CDS | 25.0% |
| ! | AGAACAAAAAATTACAAGCA+TGG | - | chr3.1:92686328-92686347 | None:intergenic | 25.0% |
| ! | AGAGAGAGATATATATAAAG+CGG | - | chr3.1:92685079-92685098 | None:intergenic | 25.0% |
| ! | ATTTCATTGCAAAATGCATA+GGG | + | chr3.1:92685342-92685361 | MS.gene68150:intron | 25.0% |
| ! | CAATTGAAGCATAAATAGTT+AGG | - | chr3.1:92686818-92686837 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATGGAGTCAAT+GGG | + | chr3.1:92686517-92686536 | MS.gene68150:CDS | 25.0% |
| ! | TTGCAATTTATCTGCATTTA+GGG | - | chr3.1:92686046-92686065 | None:intergenic | 25.0% |
| ! | TTTGCAATTTATCTGCATTT+AGG | - | chr3.1:92686047-92686066 | None:intergenic | 25.0% |
| !! | AACAGGTATTTTTCATAACT+CGG | - | chr3.1:92685451-92685470 | None:intergenic | 25.0% |
| !! | CTCCTTTTCGTAATATTTTT+TGG | - | chr3.1:92686494-92686513 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAAAAGCAAAC+AGG | - | chr3.1:92685468-92685487 | None:intergenic | 25.0% |
| !!! | CTAGTGTTTTTAGAGTAAAA+AGG | - | chr3.1:92686276-92686295 | None:intergenic | 25.0% |
| !!! | GTTTTTAGAGTAAAAAGGAA+TGG | - | chr3.1:92686271-92686290 | None:intergenic | 25.0% |
| AAAAAGTTGAACCTCTTGAA+TGG | - | chr3.1:92684923-92684942 | None:intergenic | 30.0% | |
| AAAATCAATCCCATAATGGT+TGG | + | chr3.1:92685001-92685020 | MS.gene68150:intron | 30.0% | |
| AACTGAAGTAAGTCTAGTAA+AGG | + | chr3.1:92686973-92686992 | MS.gene68150:intron | 30.0% | |
| AAGCAATAAAATCAAGGCAT+CGG | - | chr3.1:92686352-92686371 | None:intergenic | 30.0% | |
| ACAACAACAACAGAAAAAAG+GGG | - | chr3.1:92685038-92685057 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr3.1:92686075-92686094 | None:intergenic | 30.0% | |
| ATGATGAACATCACTTTGAT+GGG | - | chr3.1:92685884-92685903 | None:intergenic | 30.0% | |
| CAACAACAACAACAGAAAAA+AGG | - | chr3.1:92685040-92685059 | None:intergenic | 30.0% | |
| CCTAAATGTTAACAATGATG+AGG | + | chr3.1:92685837-92685856 | MS.gene68150:CDS | 30.0% | |
| CCTCATCATTGTTAACATTT+AGG | - | chr3.1:92685840-92685859 | None:intergenic | 30.0% | |
| TAACTCCAAAATTGAGATTC+TGG | + | chr3.1:92684818-92684837 | MS.gene68150:CDS | 30.0% | |
| TATAGAGAGTGAGCATATTA+AGG | + | chr3.1:92684438-92684457 | MS.gene68150:CDS | 30.0% | |
| TCAGGGACTAAATTAACTAA+CGG | - | chr3.1:92686122-92686141 | None:intergenic | 30.0% | |
| TCTGGCATACAAATAGAATT+GGG | - | chr3.1:92685721-92685740 | None:intergenic | 30.0% | |
| TTCACTTAAATGCAATTCTG+TGG | + | chr3.1:92685666-92685685 | MS.gene68150:CDS | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr3.1:92686196-92686215 | MS.gene68150:intron | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr3.1:92686195-92686214 | MS.gene68150:intron | 30.0% | |
| ! | AGTAAGTCTAGTAAAGGTAT+TGG | + | chr3.1:92686979-92686998 | MS.gene68150:intron | 30.0% |
| ! | CTTTTCCAGAATCTCAATTT+TGG | - | chr3.1:92684826-92684845 | None:intergenic | 30.0% |
| !!! | ATTTCTGGTTGATTCCTTTT+TGG | + | chr3.1:92685971-92685990 | MS.gene68150:intron | 30.0% |
| !!! | TCAAGAGGTTCAACTTTTTT+TGG | + | chr3.1:92684924-92684943 | MS.gene68150:CDS | 30.0% |
| !!! | TCTTTTTTCAGAATTGGAGA+AGG | + | chr3.1:92686908-92686927 | MS.gene68150:intron | 30.0% |
| !!! | TTTCTGGTTGATTCCTTTTT+GGG | + | chr3.1:92685972-92685991 | MS.gene68150:intron | 30.0% |
| AAAGACAATGGAAGGCTTAA+AGG | + | chr3.1:92685541-92685560 | MS.gene68150:CDS | 35.0% | |
| AAGTGACTAATTCCCCAAAA+AGG | - | chr3.1:92685988-92686007 | None:intergenic | 35.0% | |
| AATGGGAAGAGGATAATCTA+AGG | + | chr3.1:92686534-92686553 | MS.gene68150:CDS | 35.0% | |
| ACAAGTGGAGAAATTTGAAG+CGG | + | chr3.1:92687068-92687087 | MS.gene68150:CDS | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | - | chr3.1:92686139-92686158 | None:intergenic | 35.0% | |
| ATACAAATAGAATTGGGCAC+AGG | - | chr3.1:92685715-92685734 | None:intergenic | 35.0% | |
| ATGAAAATGCTTCTGTTGGA+AGG | + | chr3.1:92684508-92684527 | MS.gene68150:CDS | 35.0% | |
| ATGAAGCACAAGCACATATA+CGG | - | chr3.1:92685240-92685259 | None:intergenic | 35.0% | |
| CCTAACCAATGAATGATTCA+TGG | - | chr3.1:92685371-92685390 | None:intergenic | 35.0% | |
| GAAGATGAAAATGCTTCTGT+TGG | + | chr3.1:92684504-92684523 | MS.gene68150:CDS | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr3.1:92686076-92686095 | None:intergenic | 35.0% | |
| GATGATGAACATCACTTTGA+TGG | - | chr3.1:92685885-92685904 | None:intergenic | 35.0% | |
| GCTCAAAATCAATCCCATAA+TGG | + | chr3.1:92684997-92685016 | MS.gene68150:CDS | 35.0% | |
| GTACATTTGCATCTTTACTC+TGG | - | chr3.1:92685801-92685820 | None:intergenic | 35.0% | |
| GTAGACATAAGCAGATTTCA+TGG | - | chr3.1:92684662-92684681 | None:intergenic | 35.0% | |
| GTCTGGCATACAAATAGAAT+TGG | - | chr3.1:92685722-92685741 | None:intergenic | 35.0% | |
| TAACATTTAGGCAAGCATGT+GGG | - | chr3.1:92685828-92685847 | None:intergenic | 35.0% | |
| TATATGTGCTTGTGCTTCAT+AGG | + | chr3.1:92685240-92685259 | MS.gene68150:intron | 35.0% | |
| TCTCTCTCCCAAAGTATATA+AGG | - | chr3.1:92685322-92685341 | None:intergenic | 35.0% | |
| TTAACATTTAGGCAAGCATG+TGG | - | chr3.1:92685829-92685848 | None:intergenic | 35.0% | |
| TTTGTATGCCAGACATTGTA+AGG | + | chr3.1:92685728-92685747 | MS.gene68150:CDS | 35.0% | |
| ! | AGTGAGAGCCTTATATACTT+TGG | + | chr3.1:92685311-92685330 | MS.gene68150:intron | 35.0% |
| ! | CATGGTTCGATAAGAAGTAT+AGG | - | chr3.1:92685146-92685165 | None:intergenic | 35.0% |
| ! | CATGTATCGTGAGTTGAAAA+GGG | - | chr3.1:92684863-92684882 | None:intergenic | 35.0% |
| ! | CCATGAATCATTCATTGGTT+AGG | + | chr3.1:92685368-92685387 | MS.gene68150:intron | 35.0% |
| ! | CTATTTGGTTTCATCAAGCT+AGG | - | chr3.1:92685907-92685926 | None:intergenic | 35.0% |
| ! | GTGAGAGCCTTATATACTTT+GGG | + | chr3.1:92685312-92685331 | MS.gene68150:intron | 35.0% |
| ! | TACTACTGTTGTTGTTGTTG+AGG | + | chr3.1:92685573-92685592 | MS.gene68150:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGAGGTAA+TGG | + | chr3.1:92685579-92685598 | MS.gene68150:CDS | 35.0% |
| ! | TTTGGTTCATACTCCTTCAA+CGG | - | chr3.1:92686476-92686495 | None:intergenic | 35.0% |
| !! | AGGTTGATTTGAAAGACAAG+TGG | + | chr3.1:92687053-92687072 | MS.gene68150:intron | 35.0% |
| !! | CATCTTCCGATTATCGATTT+CGG | - | chr3.1:92684491-92684510 | None:intergenic | 35.0% |
| !! | TTCTGGTTGATTCCTTTTTG+GGG | + | chr3.1:92685973-92685992 | MS.gene68150:intron | 35.0% |
| !!! | AACTTTTTTTGGAGGATGCT+CGG | + | chr3.1:92684935-92684954 | MS.gene68150:CDS | 35.0% |
| !!! | AGAGGTTCAACTTTTTTTGG+AGG | + | chr3.1:92684927-92684946 | MS.gene68150:CDS | 35.0% |
| !!! | TTACTCTGGTTTTCCATTTG+TGG | - | chr3.1:92685787-92685806 | None:intergenic | 35.0% |
| AAAATGGAGTCAATGGGAAG+AGG | + | chr3.1:92686523-92686542 | MS.gene68150:CDS | 40.0% | |
| AACTCGACAAAGACAATGGA+AGG | + | chr3.1:92685533-92685552 | MS.gene68150:CDS | 40.0% | |
| ACATCAGACCTTACAATGTC+TGG | - | chr3.1:92685739-92685758 | None:intergenic | 40.0% | |
| AGACATTGTAAGGTCTGATG+TGG | + | chr3.1:92685738-92685757 | MS.gene68150:CDS | 40.0% | |
| ATATTCTGTCAACTGCTTGG+AGG | - | chr3.1:92684756-92684775 | None:intergenic | 40.0% | |
| ATGGAACTCGACAAAGACAA+TGG | + | chr3.1:92685529-92685548 | MS.gene68150:CDS | 40.0% | |
| CAACAGAGTGAAGAAAGGAA+GGG | - | chr3.1:92684975-92684994 | None:intergenic | 40.0% | |
| CAGTCACCGAAATCGATAAT+CGG | + | chr3.1:92684482-92684501 | MS.gene68150:CDS | 40.0% | |
| CCATTCATCGATAGATGCTT+TGG | - | chr3.1:92684554-92684573 | None:intergenic | 40.0% | |
| CTTCATTGTCTGATACCAGA+AGG | + | chr3.1:92684893-92684912 | MS.gene68150:CDS | 40.0% | |
| GAAGAGGATAATCTAAGGAC+CGG | + | chr3.1:92686539-92686558 | MS.gene68150:CDS | 40.0% | |
| GACTAACGAAGTCTACATTC+AGG | - | chr3.1:92686140-92686159 | None:intergenic | 40.0% | |
| GATTTCATGGCATCGCTAAT+AGG | - | chr3.1:92684649-92684668 | None:intergenic | 40.0% | |
| GGCAATTGAAGACACAAATC+AGG | + | chr3.1:92685759-92685778 | MS.gene68150:CDS | 40.0% | |
| GGTAAAAGCAAAAGGAGATG+AGG | - | chr3.1:92686660-92686679 | None:intergenic | 40.0% | |
| GGTCTCCATGAATCATTCAT+TGG | + | chr3.1:92685363-92685382 | MS.gene68150:intron | 40.0% | |
| GTGTCAAGTCAACATTGTGT+CGG | - | chr3.1:92685176-92685195 | None:intergenic | 40.0% | |
| TCAGAATTGGAGAAGGAAAC+TGG | + | chr3.1:92686915-92686934 | MS.gene68150:intron | 40.0% | |
| TCCAAGCAGTTGACAGAATA+TGG | + | chr3.1:92684755-92684774 | MS.gene68150:CDS | 40.0% | |
| TCCATATTCTGTCAACTGCT+TGG | - | chr3.1:92684759-92684778 | None:intergenic | 40.0% | |
| TCTCATATTAGAGTCTCCGA+TGG | + | chr3.1:92685510-92685529 | MS.gene68150:intron | 40.0% | |
| TGAGTACGAGCAGAACTATT+TGG | - | chr3.1:92685922-92685941 | None:intergenic | 40.0% | |
| TGCTTATGTCTACATTGCTG+TGG | + | chr3.1:92684669-92684688 | MS.gene68150:CDS | 40.0% | |
| TGGACAACAACTCATCTTCA+AGG | - | chr3.1:92684534-92684553 | None:intergenic | 40.0% | |
| TTGACAGAATATGGAACCGT+AGG | + | chr3.1:92684764-92684783 | MS.gene68150:CDS | 40.0% | |
| TTGTCTTTGTCGAGTTCCAT+CGG | - | chr3.1:92685529-92685548 | None:intergenic | 40.0% | |
| ! | AAGTGAATCCCCGTTCTTTT+GGG | - | chr3.1:92685653-92685672 | None:intergenic | 40.0% |
| ! | AGAGTCAATTTTGCTACAGC+TGG | - | chr3.1:92685614-92685633 | None:intergenic | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr3.1:92686000-92686019 | MS.gene68150:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3.1:92686019-92686000 | None:intergenic | 40.0% |
| ! | ATAACTCGGAAAGCGTGAAT+GGG | - | chr3.1:92685437-92685456 | None:intergenic | 40.0% |
| ! | CCAAAGCATCTATCGATGAA+TGG | + | chr3.1:92684551-92684570 | MS.gene68150:CDS | 40.0% |
| ! | GCATGTATCGTGAGTTGAAA+AGG | - | chr3.1:92684864-92684883 | None:intergenic | 40.0% |
| ! | TAAGTGAATCCCCGTTCTTT+TGG | - | chr3.1:92685654-92685673 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr3.1:92685999-92686018 | MS.gene68150:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3.1:92686018-92685999 | None:intergenic | 40.0% |
| ! | TGGTGTTTGGAATTCGTTCT+TGG | + | chr3.1:92684400-92684419 | MS.gene68150:CDS | 40.0% |
| !! | ATTATCGATTTCGGTGACTG+AGG | - | chr3.1:92684482-92684501 | None:intergenic | 40.0% |
| !! | CATCGCTAATAGGTGGATTA+GGG | - | chr3.1:92684639-92684658 | None:intergenic | 40.0% |
| !! | GTGGATTAGGGTTTGAAGAA+GGG | - | chr3.1:92684627-92684646 | None:intergenic | 40.0% |
| !! | TGAAAAGGGAAGCATCGATT+CGG | - | chr3.1:92684849-92684868 | None:intergenic | 40.0% |
| AACTAACGGAGTCTGCATTC+AGG | - | chr3.1:92686108-92686127 | None:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr3.1:92686107-92686126 | None:intergenic | 45.0% | |
| ACTGCTTGGAGGTAGTGTTT+AGG | - | chr3.1:92684745-92684764 | None:intergenic | 45.0% | |
| AGCAGCAACAGAGTGAAGAA+AGG | - | chr3.1:92684980-92684999 | None:intergenic | 45.0% | |
| ATGGATGCTTGAACTTCTCG+AGG | + | chr3.1:92684570-92684589 | MS.gene68150:CDS | 45.0% | |
| ATTGCAGGCAGGAACATCAA+GGG | + | chr3.1:92686403-92686422 | MS.gene68150:CDS | 45.0% | |
| ATTTAGGCAAGCATGTGGGT+TGG | - | chr3.1:92685824-92685843 | None:intergenic | 45.0% | |
| CAATGGAAGGCTTAAAGGCA+AGG | + | chr3.1:92685546-92685565 | MS.gene68150:CDS | 45.0% | |
| CACAAATCAGGAGCCACAAA+TGG | + | chr3.1:92685771-92685790 | MS.gene68150:CDS | 45.0% | |
| CAGAAGGAAAGCCATTCAAG+AGG | + | chr3.1:92684909-92684928 | MS.gene68150:CDS | 45.0% | |
| CGTAGGTTTCAAAACCTGGA+GGG | + | chr3.1:92684781-92684800 | MS.gene68150:CDS | 45.0% | |
| CTCTTGAATGGCTTTCCTTC+TGG | - | chr3.1:92684911-92684930 | None:intergenic | 45.0% | |
| CTGCTTGGAGGTAGTGTTTA+GGG | - | chr3.1:92684744-92684763 | None:intergenic | 45.0% | |
| GAACCGTAGGTTTCAAAACC+TGG | + | chr3.1:92684777-92684796 | MS.gene68150:CDS | 45.0% | |
| GAAGAAGCTTTCTCCGTTGA+AGG | + | chr3.1:92686460-92686479 | MS.gene68150:CDS | 45.0% | |
| GACAAATCGTTCCCCATTCA+GGG | + | chr3.1:92686227-92686246 | MS.gene68150:intron | 45.0% | |
| GACGAATCGTTTCCCATTCA+GGG | - | chr3.1:92686015-92686034 | None:intergenic | 45.0% | |
| GATGCTCGGAATAACCTTGT+AGG | + | chr3.1:92684949-92684968 | MS.gene68150:CDS | 45.0% | |
| GCAAATAACTTCTTCCCTCC+AGG | - | chr3.1:92684798-92684817 | None:intergenic | 45.0% | |
| GCAACAGAGTGAAGAAAGGA+AGG | - | chr3.1:92684976-92684995 | None:intergenic | 45.0% | |
| GGAAGTTGCCTTCGTAAGAT+TGG | - | chr3.1:92685863-92685882 | None:intergenic | 45.0% | |
| GTTAACGAGGCCCAAAAGAA+CGG | + | chr3.1:92685640-92685659 | MS.gene68150:CDS | 45.0% | |
| TAGTGGGATGATTCGATCGA+TGG | + | chr3.1:92686380-92686399 | MS.gene68150:intron | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr3.1:92686183-92686202 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3.1:92686167-92686186 | MS.gene68150:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3.1:92686171-92686190 | None:intergenic | 45.0% | |
| TGACAAATCGTTCCCCATTC+AGG | + | chr3.1:92686226-92686245 | MS.gene68150:intron | 45.0% | |
| TGACGAATCGTTTCCCATTC+AGG | - | chr3.1:92686016-92686035 | None:intergenic | 45.0% | |
| TGACTCTTTGCCAGTTAACG+AGG | + | chr3.1:92685627-92685646 | MS.gene68150:CDS | 45.0% | |
| TGATGAGGCCAATCTTACGA+AGG | + | chr3.1:92685852-92685871 | MS.gene68150:CDS | 45.0% | |
| TTAACGAGGCCCAAAAGAAC+GGG | + | chr3.1:92685641-92685660 | MS.gene68150:CDS | 45.0% | |
| TTCATGGCATCGCTAATAGG+TGG | - | chr3.1:92684646-92684665 | None:intergenic | 45.0% | |
| TTGCTGTGGAATGTACCGTT+AGG | + | chr3.1:92684683-92684702 | MS.gene68150:CDS | 45.0% | |
| TTTAGGCAAGCATGTGGGTT+GGG | - | chr3.1:92685823-92685842 | None:intergenic | 45.0% | |
| ! | CATAACTCGGAAAGCGTGAA+TGG | - | chr3.1:92685438-92685457 | None:intergenic | 45.0% |
| ! | GCATCGCTAATAGGTGGATT+AGG | - | chr3.1:92684640-92684659 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr3.1:92686020-92686001 | None:intergenic | 45.0% |
| ! | TAACTCGGAAAGCGTGAATG+GGG | - | chr3.1:92685436-92685455 | None:intergenic | 45.0% |
| ! | TGCTGCTTCAAGGTACCTAA+CGG | - | chr3.1:92684701-92684720 | None:intergenic | 45.0% |
| ! | TGGAGAAATTTGAAGCGGTC+TGG | + | chr3.1:92687073-92687092 | MS.gene68150:CDS | 45.0% |
| ! | TTCTTTTGGGCCTCGTTAAC+TGG | - | chr3.1:92685640-92685659 | None:intergenic | 45.0% |
| !! | GGTGGATTAGGGTTTGAAGA+AGG | - | chr3.1:92684628-92684647 | None:intergenic | 45.0% |
| !! | TGATTCGATCGATGGATTGC+AGG | + | chr3.1:92686388-92686407 | MS.gene68150:CDS | 45.0% |
| !!! | CCTCCAGGTTTTGAAACCTA+CGG | - | chr3.1:92684783-92684802 | None:intergenic | 45.0% |
| AAAGCGTGAATGGGGGATTC+AGG | - | chr3.1:92685428-92685447 | None:intergenic | 50.0% | |
| AAGCGTGAATGGGGGATTCA+GGG | - | chr3.1:92685427-92685446 | None:intergenic | 50.0% | |
| CCGTAGGTTTCAAAACCTGG+AGG | + | chr3.1:92684780-92684799 | MS.gene68150:CDS | 50.0% | |
| GAAGAAAGGAAGGGCCTACA+AGG | - | chr3.1:92684966-92684985 | None:intergenic | 50.0% | |
| GATTGCAGGCAGGAACATCA+AGG | + | chr3.1:92686402-92686421 | MS.gene68150:CDS | 50.0% | |
| GGAAAGGTTAGGGTGGTGTT+TGG | + | chr3.1:92684387-92684406 | MS.gene68150:CDS | 50.0% | |
| GGAGAAAGCTTCTTCCTCTC+TGG | - | chr3.1:92686455-92686474 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3.1:92686166-92686185 | MS.gene68150:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3.1:92686172-92686191 | None:intergenic | 50.0% | |
| GTTAGGTACCTTGAAGCAGC+AGG | + | chr3.1:92684700-92684719 | MS.gene68150:CDS | 50.0% | |
| TAACGAGGCCCAAAAGAACG+GGG | + | chr3.1:92685642-92685661 | MS.gene68150:CDS | 50.0% | |
| TTCGTTTGCGTAGTCCAGAG+AGG | + | chr3.1:92686438-92686457 | MS.gene68150:CDS | 50.0% | |
| TTGCAGGCAGGAACATCAAG+GGG | + | chr3.1:92686404-92686423 | MS.gene68150:CDS | 50.0% | |
| ! | AACTCGGAAAGCGTGAATGG+GGG | - | chr3.1:92685435-92685454 | None:intergenic | 50.0% |
| ! | TAGTTCTGCTCGTACTCACG+AGG | + | chr3.1:92685924-92685943 | MS.gene68150:CDS | 50.0% |
| !! | CATTGTGTCGGTGTCAGACA+TGG | - | chr3.1:92685164-92685183 | None:intergenic | 50.0% |
| TACCTTGAAGCAGCAGGTGC+AGG | + | chr3.1:92684706-92684725 | MS.gene68150:CDS | 55.0% | |
| !! | TCGATCGATGGATTGCAGGC+AGG | + | chr3.1:92686392-92686411 | MS.gene68150:CDS | 55.0% |
| CGTGAATGGGGGATTCAGGG+AGG | - | chr3.1:92685424-92685443 | None:intergenic | 60.0% | |
| CTTGAAGCAGCAGGTGCAGG+TGG | + | chr3.1:92684709-92684728 | MS.gene68150:CDS | 60.0% | |
| ! | CACCTGCACCTGCTGCTTCA+AGG | - | chr3.1:92684711-92684730 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92684385 | 92687105 | 92684385 | ID=MS.gene68150 |
| chr3.1 | mRNA | 92684385 | 92687105 | 92684385 | ID=MS.gene68150.t1;Parent=MS.gene68150 |
| chr3.1 | exon | 92684385 | 92685018 | 92684385 | ID=MS.gene68150.t1.exon1;Parent=MS.gene68150.t1 |
| chr3.1 | CDS | 92684385 | 92685018 | 92684385 | ID=cds.MS.gene68150.t1;Parent=MS.gene68150.t1 |
| chr3.1 | exon | 92685521 | 92685945 | 92685521 | ID=MS.gene68150.t1.exon2;Parent=MS.gene68150.t1 |
| chr3.1 | CDS | 92685521 | 92685945 | 92685521 | ID=cds.MS.gene68150.t1;Parent=MS.gene68150.t1 |
| chr3.1 | exon | 92686383 | 92686570 | 92686383 | ID=MS.gene68150.t1.exon3;Parent=MS.gene68150.t1 |
| chr3.1 | CDS | 92686383 | 92686570 | 92686383 | ID=cds.MS.gene68150.t1;Parent=MS.gene68150.t1 |
| chr3.1 | exon | 92686919 | 92686979 | 92686919 | ID=MS.gene68150.t1.exon4;Parent=MS.gene68150.t1 |
| chr3.1 | CDS | 92686919 | 92686979 | 92686919 | ID=cds.MS.gene68150.t1;Parent=MS.gene68150.t1 |
| chr3.1 | exon | 92687055 | 92687105 | 92687055 | ID=MS.gene68150.t1.exon5;Parent=MS.gene68150.t1 |
| chr3.1 | CDS | 92687055 | 92687105 | 92687055 | ID=cds.MS.gene68150.t1;Parent=MS.gene68150.t1 |
| Gene Sequence |
| Protein sequence |
