AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68185

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68185.t1 MTR_3g117380 94.020 301 14 1 1 297 15 315 0.0 539
MS.gene68185.t1 MTR_4g071590 56.688 314 99 9 1 296 1 295 8.48e-102 300
MS.gene68185.t1 MTR_4g471590 56.688 314 99 9 1 296 1 295 8.48e-102 300
MS.gene68185.t1 MTR_8g076340 41.135 282 136 8 21 287 25 291 1.40e-53 176
MS.gene68185.t1 MTR_3g109760 40.824 267 127 8 36 281 21 277 6.90e-46 157
MS.gene68185.t1 MTR_5g021340 39.198 324 152 9 1 282 51 371 8.95e-46 159
MS.gene68185.t1 MTR_8g013950 37.868 272 130 7 39 280 33 295 1.71e-45 157
MS.gene68185.t1 MTR_1g006650 34.323 303 154 8 18 281 8 304 1.86e-42 149
MS.gene68185.t1 MTR_1g046680 62.637 91 34 0 190 280 151 241 4.00e-34 124
MS.gene68185.t1 MTR_1g116010 37.156 218 102 7 93 275 11 228 6.76e-34 124
MS.gene68185.t1 MTR_1g094930 76.923 65 15 0 211 275 147 211 3.18e-33 122
MS.gene68185.t1 MTR_1g094930 76.923 65 15 0 211 275 242 306 1.50e-32 122
MS.gene68185.t1 MTR_7g085410 38.333 240 97 9 80 275 20 252 2.16e-32 120
MS.gene68185.t1 MTR_6g032830 37.054 224 85 8 107 275 34 256 3.13e-32 120
MS.gene68185.t1 MTR_2g094600 68.493 73 23 0 203 275 208 280 5.57e-32 120
MS.gene68185.t1 MTR_4g058910 73.134 67 18 0 211 277 314 380 1.06e-30 119
MS.gene68185.t1 MTR_5g007600 63.636 77 28 0 202 278 250 326 2.92e-29 114
MS.gene68185.t1 MTR_5g007600 54.945 91 41 0 192 282 138 228 4.32e-27 108
MS.gene68185.t1 MTR_7g446110 58.730 63 26 0 210 272 186 248 3.49e-21 90.5
MS.gene68185.t1 MTR_7g445950 55.556 63 28 0 210 272 119 181 9.86e-20 85.1
MS.gene68185.t1 MTR_7g445980 56.923 65 27 1 209 272 31 95 1.58e-19 82.0
MS.gene68185.t1 MTR_7g446070 56.061 66 27 1 211 276 132 195 6.93e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68185.t1 AT4G36240 43.426 251 101 7 40 278 10 231 1.08e-52 172
MS.gene68185.t1 AT5G66320 39.936 313 145 9 8 278 5 316 1.42e-49 167
MS.gene68185.t1 AT5G66320 39.936 313 145 9 8 278 5 316 1.42e-49 167
MS.gene68185.t1 AT4G34680 42.123 292 114 11 6 286 7 254 1.22e-46 158
MS.gene68185.t1 AT4G34680 42.123 292 114 11 6 286 7 254 1.22e-46 158
MS.gene68185.t1 AT4G32890 40.426 282 129 14 21 280 2 266 1.35e-46 159
MS.gene68185.t1 AT5G25830 38.596 285 122 13 40 280 13 288 1.22e-41 147
MS.gene68185.t1 AT3G60530 46.277 188 73 5 94 278 63 225 1.77e-41 144
MS.gene68185.t1 AT2G45050 40.000 210 93 5 87 281 58 249 1.40e-38 137
MS.gene68185.t1 AT3G51080 70.000 90 23 2 211 296 221 310 1.91e-36 132
MS.gene68185.t1 AT3G24050 65.476 84 28 1 194 277 178 260 5.60e-32 120
MS.gene68185.t1 AT3G54810 73.529 68 18 0 211 278 229 296 5.65e-32 121
MS.gene68185.t1 AT3G54810 73.529 68 18 0 211 278 229 296 5.65e-32 121
MS.gene68185.t1 AT1G08010 63.636 77 28 0 201 277 210 286 5.50e-31 118
MS.gene68185.t1 AT1G08010 63.636 77 28 0 201 277 210 286 5.50e-31 118
MS.gene68185.t1 AT1G08010 63.636 77 28 0 201 277 210 286 5.50e-31 118
MS.gene68185.t1 AT1G08000 56.383 94 34 1 191 277 191 284 1.41e-29 114
MS.gene68185.t1 AT1G08000 56.383 94 34 1 191 277 191 284 1.41e-29 114
MS.gene68185.t1 AT3G45170 55.422 83 37 0 196 278 100 182 2.51e-27 105
MS.gene68185.t1 AT2G28340 61.538 65 25 0 213 277 193 257 6.93e-25 101

Find 83 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTAACTGACCCTCTTCT+TGG 0.222887 3.1:-92383272 None:intergenic
GAGTAATTCGGTTGAGAAAA+TGG 0.282779 3.1:-92382858 None:intergenic
TTCTCATCTCCAACACTTTA+CGG 0.294944 3.1:-92383467 None:intergenic
CAACACTTTACGGTGGCTAT+TGG 0.312622 3.1:-92383457 None:intergenic
CTCAGCAAGTGGTAACCATT+TGG 0.349550 3.1:-92383536 None:intergenic
GAAAACCCAACCCTCGCGTT+TGG 0.352223 3.1:+92383160 MS.gene68185:CDS
ACCGCCAACACGGTGGTTGC+CGG 0.362678 3.1:+92382674 MS.gene68185:CDS
TTCTTGGGCCTCAAGAGCCT+CGG 0.380431 3.1:-92383256 None:intergenic
GGATGATGACGTGGCAGGTC+TGG 0.383333 3.1:+92382966 MS.gene68185:intron
TGGACCGGAACCCGGTTTAC+CGG 0.387691 3.1:+92383506 MS.gene68185:CDS
TTGGGTCTGAGCCGGTAAAC+CGG 0.389320 3.1:-92383517 None:intergenic
TGAGCCCAAACGCGAGGGTT+GGG 0.405637 3.1:-92383165 None:intergenic
AAAACCCAACCCTCGCGTTT+GGG 0.407277 3.1:+92383161 MS.gene68185:CDS
GTGTTGGTTTGAATTTGAAC+CGG 0.408949 3.1:-92383042 None:intergenic
TGAATTTCACTGCTGAAAGT+TGG 0.418828 3.1:-92383432 None:intergenic
TTGTAACTGACCCTCTTCTT+GGG 0.419497 3.1:-92383271 None:intergenic
GGGTAGAGAAGAGATAGTTC+TGG 0.431245 3.1:-92383021 None:intergenic
TCAGCAAGTGGTAACCATTT+GGG 0.434470 3.1:-92383535 None:intergenic
GAATTTCACTGCTGAAAGTT+GGG 0.435175 3.1:-92383431 None:intergenic
ACTGCTGAAAGTTGGGCTAC+AGG 0.440191 3.1:-92383424 None:intergenic
TGCGGGGTTCGTTATAAATC+AGG 0.450021 3.1:+92383375 MS.gene68185:CDS
ACTCACGGGAACGAGTAATT+CGG 0.455413 3.1:-92382870 None:intergenic
CTGAGCCCAAACGCGAGGGT+TGG 0.457925 3.1:-92383166 None:intergenic
TGAGCCGGTAAACCGGGTTC+CGG 0.459738 3.1:-92383510 None:intergenic
CAGTGGAGAACCGGTCCGTT+GGG 0.465140 3.1:+92383330 MS.gene68185:CDS
AAGACGCCGCAGTGGAGAAC+CGG 0.467079 3.1:+92383321 MS.gene68185:CDS
CTTTGAAACCGAGTTTAAGA+AGG 0.468143 3.1:+92382606 MS.gene68185:CDS
AAACCCTTTGTAACGCGTGC+GGG 0.468327 3.1:+92383358 MS.gene68185:CDS
ACCGGCAACCACCGTGTTGG+CGG 0.469757 3.1:-92382675 None:intergenic
CTTCACGGTTCTGGTCTTCG+TGG 0.473101 3.1:-92383133 None:intergenic
TCTTGGGCCTCAAGAGCCTC+GGG 0.483424 3.1:-92383255 None:intergenic
GGTAGAGAAGAGATAGTTCT+GGG 0.490371 3.1:-92383020 None:intergenic
TTCTTCTGTTTCTTCGCTGG+TGG 0.490862 3.1:-92383228 None:intergenic
ACTGCGGCGTCTTCTGCACC+TGG 0.496651 3.1:-92383311 None:intergenic
GCAGTGGAGAACCGGTCCGT+TGG 0.505231 3.1:+92383329 MS.gene68185:CDS
CTCCTTGACTTCTCTAACGG+CGG 0.512576 3.1:+92382719 MS.gene68185:CDS
ATGACGTGGCAGGTCTGGAA+TGG 0.521490 3.1:+92382971 MS.gene68185:CDS
AACCCCGCACGCGTTACAAA+GGG 0.526943 3.1:-92383361 None:intergenic
TGAGAAAATGGAAGAATCAA+AGG 0.527539 3.1:-92382846 None:intergenic
AAGTGTTGGAGATGAGAAAG+AGG 0.539631 3.1:+92383472 MS.gene68185:CDS
ACGACGGTGTAGTCATTGCC+AGG 0.543797 3.1:+92383293 MS.gene68185:CDS
CTGAAAGTTGGGCTACAGGC+CGG 0.545068 3.1:-92383420 None:intergenic
TGGGTCTGAGCCGGTAAACC+GGG 0.551116 3.1:-92383516 None:intergenic
GGAATGGTTGGACCGGAACC+CGG 0.552734 3.1:+92383498 MS.gene68185:CDS
GAGGAAAGGAATGGTTGGAC+CGG 0.555733 3.1:+92383491 MS.gene68185:CDS
AACCCTTTGTAACGCGTGCG+GGG 0.556096 3.1:+92383359 MS.gene68185:CDS
CAATAGCCACCGTAAAGTGT+TGG 0.557110 3.1:+92383458 MS.gene68185:CDS
AGAAAGAGGAAAGGAATGGT+TGG 0.560194 3.1:+92383486 MS.gene68185:CDS
ACAAACTCCCTTCTTAAACT+CGG 0.560314 3.1:-92382614 None:intergenic
GAACCCCGCACGCGTTACAA+AGG 0.560484 3.1:-92383362 None:intergenic
TTACAGGATGATGACGTGGC+AGG 0.560919 3.1:+92382961 MS.gene68185:intron
GCTCTTGAGGCCCAAGAAGA+GGG 0.561687 3.1:+92383261 MS.gene68185:CDS
GTAACCATTTGGGTCTGAGC+CGG 0.562666 3.1:-92383525 None:intergenic
TTGGAGATGAGAAAGAGGAA+AGG 0.563009 3.1:+92383477 MS.gene68185:CDS
GGGCGCTGAGCCCAAACGCG+AGG 0.563588 3.1:-92383171 None:intergenic
TTTGAAACCGAGTTTAAGAA+GGG 0.567414 3.1:+92382607 MS.gene68185:CDS
GGCTCTTGAGGCCCAAGAAG+AGG 0.567428 3.1:+92383260 MS.gene68185:CDS
GAAGTCAAGGAGGTCGTCAA+CGG 0.569324 3.1:-92382708 None:intergenic
CACCGCCGTTAGAGAAGTCA+AGG 0.571693 3.1:-92382721 None:intergenic
ATCTTCTGAGAGTGATTGAG+AGG 0.572536 3.1:-92382798 None:intergenic
TTTACCGGCTCAGACCCAAA+TGG 0.575540 3.1:+92383521 MS.gene68185:CDS
TGTTGGTTTGAATTTGAACC+GGG 0.578403 3.1:-92383041 None:intergenic
GATGAGAAAGAGGAAAGGAA+TGG 0.578460 3.1:+92383482 MS.gene68185:CDS
TGACGTGGCAGGTCTGGAAT+GGG 0.589105 3.1:+92382972 MS.gene68185:CDS
TCTCTTCTTCATCTCCGTCG+TGG 0.602523 3.1:-92382754 None:intergenic
AGAATCAAAGGAAGCGTCGG+TGG 0.602647 3.1:-92382834 None:intergenic
GGCGCTGAGCCCAAACGCGA+GGG 0.608307 3.1:-92383170 None:intergenic
GGAAGAATCAAAGGAAGCGT+CGG 0.616525 3.1:-92382837 None:intergenic
TTCACCGGCAACCACCGTGT+TGG 0.618211 3.1:-92382678 None:intergenic
CAATTTACAGGATGATGACG+TGG 0.618285 3.1:+92382957 MS.gene68185:intron
CTAATGAATGACTCAGCAAG+TGG 0.621278 3.1:-92383547 None:intergenic
AGGTGCAGAAGACGCCGCAG+TGG 0.632590 3.1:+92383313 MS.gene68185:CDS
AGAACTATCTCTTCTCTACC+CGG 0.632934 3.1:+92383023 MS.gene68185:CDS
GGGTTCGTTATAAATCAGGT+CGG 0.635663 3.1:+92383379 MS.gene68185:CDS
GTCAACGGAGAAATCTTCAC+CGG 0.637583 3.1:-92382693 None:intergenic
GACCTCCTTGACTTCTCTAA+CGG 0.644071 3.1:+92382716 MS.gene68185:CDS
AAAACCCTTTGTAACGCGTG+CGG 0.650760 3.1:+92383357 MS.gene68185:CDS
TCATCTCCAACACTTTACGG+TGG 0.668782 3.1:-92383464 None:intergenic
AACGGACCGGTTCTCCACTG+CGG 0.699688 3.1:-92383327 None:intergenic
TAGCTTCACCGCCAACACGG+TGG 0.733444 3.1:+92382667 MS.gene68185:CDS
CGCCGTTAGAGAAGTCAAGG+AGG 0.737377 3.1:-92382718 None:intergenic
AAGAGGGTCAGTTACAACGA+CGG 0.739560 3.1:+92383277 MS.gene68185:CDS
GGTGATATTCTTCACCACGA+CGG 0.777931 3.1:+92382740 MS.gene68185:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTAATTGAAATTGAAATT+GGG + chr3.1:92382930-92382949 MS.gene68185:intron 15.0%
!! TTAGTAATTGAAATTGAAAT+TGG + chr3.1:92382929-92382948 MS.gene68185:intron 15.0%
!! TTTCAATTACTAATACAAAA+CGG - chr3.1:92382922-92382941 None:intergenic 15.0%
!! AGTAATTGAAATTGAAATTG+GGG + chr3.1:92382931-92382950 MS.gene68185:intron 20.0%
! GTAATTGAAATTGAAATTGG+GGG + chr3.1:92382932-92382951 MS.gene68185:intron 25.0%
TGAGAAAATGGAAGAATCAA+AGG - chr3.1:92382849-92382868 None:intergenic 30.0%
! TTTGAAACCGAGTTTAAGAA+GGG + chr3.1:92382607-92382626 MS.gene68185:CDS 30.0%
!! TTTGTTTTTCAGCAAACTCT+CGG + chr3.1:92382632-92382651 MS.gene68185:CDS 30.0%
AAATTGGGGGTTCAATTTAC+AGG + chr3.1:92382945-92382964 MS.gene68185:intron 35.0%
AACGAAGAGAGAAAAACTCA+CGG - chr3.1:92382888-92382907 None:intergenic 35.0%
ACAAACTCCCTTCTTAAACT+CGG - chr3.1:92382617-92382636 None:intergenic 35.0%
GAATTTCACTGCTGAAAGTT+GGG - chr3.1:92383434-92383453 None:intergenic 35.0%
GAGTAATTCGGTTGAGAAAA+TGG - chr3.1:92382861-92382880 None:intergenic 35.0%
GTCCTCAAAAACATGAAACT+CGG + chr3.1:92383067-92383086 MS.gene68185:CDS 35.0%
TGAATTTCACTGCTGAAAGT+TGG - chr3.1:92383435-92383454 None:intergenic 35.0%
TTCTCATCTCCAACACTTTA+CGG - chr3.1:92383470-92383489 None:intergenic 35.0%
! GTTGGGTTTTCTATTCTTCA+CGG - chr3.1:92383151-92383170 None:intergenic 35.0%
! TTTTCTATTCTTCACGGTTC+TGG - chr3.1:92383145-92383164 None:intergenic 35.0%
!! CTTTGAAACCGAGTTTAAGA+AGG + chr3.1:92382606-92382625 MS.gene68185:CDS 35.0%
!! GTGTTGGTTTGAATTTGAAC+CGG - chr3.1:92383045-92383064 None:intergenic 35.0%
!! TGTTGGTTTGAATTTGAACC+GGG - chr3.1:92383044-92383063 None:intergenic 35.0%
!! TTTTTCTTCTGTTTCTTCGC+TGG - chr3.1:92383234-92383253 None:intergenic 35.0%
!!! TAAATCAGGTCGGCTTTTTT+CGG + chr3.1:92383389-92383408 MS.gene68185:CDS 35.0%
ACGAAGAGAGAAAAACTCAC+GGG - chr3.1:92382887-92382906 None:intergenic 40.0%
AGAAAGAGGAAAGGAATGGT+TGG + chr3.1:92383486-92383505 MS.gene68185:CDS 40.0%
AGAACTATCTCTTCTCTACC+CGG + chr3.1:92383023-92383042 MS.gene68185:CDS 40.0%
CAAAAACATGAAACTCGGCA+TGG + chr3.1:92383072-92383091 MS.gene68185:CDS 40.0%
GATGAGAAAGAGGAAAGGAA+TGG + chr3.1:92383482-92383501 MS.gene68185:CDS 40.0%
GGGTTCGTTATAAATCAGGT+CGG + chr3.1:92383379-92383398 MS.gene68185:CDS 40.0%
GGTAGAGAAGAGATAGTTCT+GGG - chr3.1:92383023-92383042 None:intergenic 40.0%
TCAGCAAGTGGTAACCATTT+GGG - chr3.1:92383538-92383557 None:intergenic 40.0%
TTGGAGATGAGAAAGAGGAA+AGG + chr3.1:92383477-92383496 MS.gene68185:CDS 40.0%
TTGTAACTGACCCTCTTCTT+GGG - chr3.1:92383274-92383293 None:intergenic 40.0%
! ATCTTCTGAGAGTGATTGAG+AGG - chr3.1:92382801-92382820 None:intergenic 40.0%
! CAATTTACAGGATGATGACG+TGG + chr3.1:92382957-92382976 MS.gene68185:intron 40.0%
!! AAGTGTTGGAGATGAGAAAG+AGG + chr3.1:92383472-92383491 MS.gene68185:CDS 40.0%
!! ATGTTTTTGAGGACACGTGT+TGG - chr3.1:92383061-92383080 None:intergenic 40.0%
!! TGCCGAGTTTCATGTTTTTG+AGG - chr3.1:92383072-92383091 None:intergenic 40.0%
!!! GCTTTTTTCGGAGTATAGAC+CGG + chr3.1:92383401-92383420 MS.gene68185:CDS 40.0%
AAAACCCTTTGTAACGCGTG+CGG + chr3.1:92383357-92383376 MS.gene68185:CDS 45.0%
AAGAGGGTCAGTTACAACGA+CGG + chr3.1:92383277-92383296 MS.gene68185:CDS 45.0%
ACTCACGGGAACGAGTAATT+CGG - chr3.1:92382873-92382892 None:intergenic 45.0%
CAACACTTTACGGTGGCTAT+TGG - chr3.1:92383460-92383479 None:intergenic 45.0%
CAATAGCCACCGTAAAGTGT+TGG + chr3.1:92383458-92383477 MS.gene68185:CDS 45.0%
CCAAAAACAACAGACGGTGA+CGG - chr3.1:92383204-92383223 None:intergenic 45.0%
GAAACAGAAGAAAAAGCCCG+AGG + chr3.1:92383239-92383258 MS.gene68185:CDS 45.0%
GACCTCCTTGACTTCTCTAA+CGG + chr3.1:92382716-92382735 MS.gene68185:CDS 45.0%
GGGTAGAGAAGAGATAGTTC+TGG - chr3.1:92383024-92383043 None:intergenic 45.0%
GGTGATATTCTTCACCACGA+CGG + chr3.1:92382740-92382759 MS.gene68185:CDS 45.0%
GTCAACGGAGAAATCTTCAC+CGG - chr3.1:92382696-92382715 None:intergenic 45.0%
GTTGTAACTGACCCTCTTCT+TGG - chr3.1:92383275-92383294 None:intergenic 45.0%
TCATCTCCAACACTTTACGG+TGG - chr3.1:92383467-92383486 None:intergenic 45.0%
TGCGGGGTTCGTTATAAATC+AGG + chr3.1:92383375-92383394 MS.gene68185:CDS 45.0%
! GGAAGAATCAAAGGAAGCGT+CGG - chr3.1:92382840-92382859 None:intergenic 45.0%
! TTCTTCTGTTTCTTCGCTGG+TGG - chr3.1:92383231-92383250 None:intergenic 45.0%
!! ACAGACGGTGACGGAAAAAA+CGG - chr3.1:92383195-92383214 None:intergenic 45.0%
!! CAAAGGGTTTTAGCACCCAA+CGG - chr3.1:92383348-92383367 None:intergenic 45.0%
!!! CGTCACCGTCTGTTGTTTTT+GGG + chr3.1:92383202-92383221 MS.gene68185:CDS 45.0%
!!! GTCACCGTCTGTTGTTTTTG+GGG + chr3.1:92383203-92383222 MS.gene68185:CDS 45.0%
!!! TCACCGTCTGTTGTTTTTGG+GGG + chr3.1:92383204-92383223 MS.gene68185:CDS 45.0%
!!! TTTTAGCTTCACCGCCAACA+CGG + chr3.1:92382664-92382683 MS.gene68185:CDS 45.0%
AAAACCCAACCCTCGCGTTT+GGG + chr3.1:92383161-92383180 MS.gene68185:CDS 50.0%
AAACCCTTTGTAACGCGTGC+GGG + chr3.1:92383358-92383377 MS.gene68185:CDS 50.0%
ACTGCTGAAAGTTGGGCTAC+AGG - chr3.1:92383427-92383446 None:intergenic 50.0%
CTCCTTGACTTCTCTAACGG+CGG + chr3.1:92382719-92382738 MS.gene68185:CDS 50.0%
GAAGTCAAGGAGGTCGTCAA+CGG - chr3.1:92382711-92382730 None:intergenic 50.0%
GAGGAAAGGAATGGTTGGAC+CGG + chr3.1:92383491-92383510 MS.gene68185:CDS 50.0%
GGTCCCCCAAAAACAACAGA+CGG - chr3.1:92383210-92383229 None:intergenic 50.0%
GTAACCATTTGGGTCTGAGC+CGG - chr3.1:92383528-92383547 None:intergenic 50.0%
TCTCTTCTTCATCTCCGTCG+TGG - chr3.1:92382757-92382776 None:intergenic 50.0%
! TTACAGGATGATGACGTGGC+AGG + chr3.1:92382961-92382980 MS.gene68185:intron 50.0%
! TTTTCAGCAAACTCTCGGCG+AGG + chr3.1:92382637-92382656 MS.gene68185:CDS 50.0%
!! AGAATCAAAGGAAGCGTCGG+TGG - chr3.1:92382837-92382856 None:intergenic 50.0%
!! CAGACGGTGACGGAAAAAAC+GGG - chr3.1:92383194-92383213 None:intergenic 50.0%
!! TTTACCGGCTCAGACCCAAA+TGG + chr3.1:92383521-92383540 MS.gene68185:CDS 50.0%
!!! CCGTCACCGTCTGTTGTTTT+TGG + chr3.1:92383201-92383220 MS.gene68185:CDS 50.0%
AACCCCGCACGCGTTACAAA+GGG - chr3.1:92383364-92383383 None:intergenic 55.0%
AACCCTTTGTAACGCGTGCG+GGG + chr3.1:92383359-92383378 MS.gene68185:CDS 55.0%
ACGACGGTGTAGTCATTGCC+AGG + chr3.1:92383293-92383312 MS.gene68185:CDS 55.0%
ATGACGTGGCAGGTCTGGAA+TGG + chr3.1:92382971-92382990 MS.gene68185:CDS 55.0%
CACCGCCGTTAGAGAAGTCA+AGG - chr3.1:92382724-92382743 None:intergenic 55.0%
CGCCGTTAGAGAAGTCAAGG+AGG - chr3.1:92382721-92382740 None:intergenic 55.0%
CTGAAAGTTGGGCTACAGGC+CGG - chr3.1:92383423-92383442 None:intergenic 55.0%
GAAAAAGCCCGAGGCTCTTG+AGG + chr3.1:92383248-92383267 MS.gene68185:CDS 55.0%
GAAAACCCAACCCTCGCGTT+TGG + chr3.1:92383160-92383179 MS.gene68185:CDS 55.0%
GCTCTTGAGGCCCAAGAAGA+GGG + chr3.1:92383261-92383280 MS.gene68185:CDS 55.0%
TTCTTGGGCCTCAAGAGCCT+CGG - chr3.1:92383259-92383278 None:intergenic 55.0%
TTGGGTCTGAGCCGGTAAAC+CGG - chr3.1:92383520-92383539 None:intergenic 55.0%
! CTTCACGGTTCTGGTCTTCG+TGG - chr3.1:92383136-92383155 None:intergenic 55.0%
! TGACGTGGCAGGTCTGGAAT+GGG + chr3.1:92382972-92382991 MS.gene68185:CDS 55.0%
!! GGTTTTAGCACCCAACGGAC+CGG - chr3.1:92383343-92383362 None:intergenic 55.0%
AAGACGCCGCAGTGGAGAAC+CGG + chr3.1:92383321-92383340 MS.gene68185:CDS 60.0%
CAGTGGAGAACCGGTCCGTT+GGG + chr3.1:92383330-92383349 MS.gene68185:CDS 60.0%
GAACCCCGCACGCGTTACAA+AGG - chr3.1:92383365-92383384 None:intergenic 60.0%
GGAATGGTTGGACCGGAACC+CGG + chr3.1:92383498-92383517 MS.gene68185:CDS 60.0%
GGCTCTTGAGGCCCAAGAAG+AGG + chr3.1:92383260-92383279 MS.gene68185:CDS 60.0%
TAGCTTCACCGCCAACACGG+TGG + chr3.1:92382667-92382686 MS.gene68185:CDS 60.0%
TCTTGGGCCTCAAGAGCCTC+GGG - chr3.1:92383258-92383277 None:intergenic 60.0%
TGAGCCCAAACGCGAGGGTT+GGG - chr3.1:92383168-92383187 None:intergenic 60.0%
TGAGCCGGTAAACCGGGTTC+CGG - chr3.1:92383513-92383532 None:intergenic 60.0%
TGGACCGGAACCCGGTTTAC+CGG + chr3.1:92383506-92383525 MS.gene68185:CDS 60.0%
TGGGTCTGAGCCGGTAAACC+GGG - chr3.1:92383519-92383538 None:intergenic 60.0%
TTCACCGGCAACCACCGTGT+TGG - chr3.1:92382681-92382700 None:intergenic 60.0%
! AACGGACCGGTTCTCCACTG+CGG - chr3.1:92383330-92383349 None:intergenic 60.0%
! GGATGATGACGTGGCAGGTC+TGG + chr3.1:92382966-92382985 MS.gene68185:intron 60.0%
ACCGCCAACACGGTGGTTGC+CGG + chr3.1:92382674-92382693 MS.gene68185:CDS 65.0%
ACCGGCAACCACCGTGTTGG+CGG - chr3.1:92382678-92382697 None:intergenic 65.0%
ACTGCGGCGTCTTCTGCACC+TGG - chr3.1:92383314-92383333 None:intergenic 65.0%
AGGTGCAGAAGACGCCGCAG+TGG + chr3.1:92383313-92383332 MS.gene68185:CDS 65.0%
CTGAGCCCAAACGCGAGGGT+TGG - chr3.1:92383169-92383188 None:intergenic 65.0%
GCAGTGGAGAACCGGTCCGT+TGG + chr3.1:92383329-92383348 MS.gene68185:CDS 65.0%
! GGCGCTGAGCCCAAACGCGA+GGG - chr3.1:92383173-92383192 None:intergenic 70.0%
!! GGGCGCTGAGCCCAAACGCG+AGG - chr3.1:92383174-92383193 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 92382584 92383557 92382584 ID=MS.gene68185
chr3.1 mRNA 92382584 92383557 92382584 ID=MS.gene68185.t1;Parent=MS.gene68185
chr3.1 exon 92382584 92382886 92382584 ID=MS.gene68185.t1.exon1;Parent=MS.gene68185.t1
chr3.1 CDS 92382584 92382886 92382584 ID=cds.MS.gene68185.t1;Parent=MS.gene68185.t1
chr3.1 exon 92382967 92383557 92382967 ID=MS.gene68185.t1.exon2;Parent=MS.gene68185.t1
chr3.1 CDS 92382967 92383557 92382967 ID=cds.MS.gene68185.t1;Parent=MS.gene68185.t1
Gene Sequence

>MS.gene68185

ATGGAGTTTGCAGTAGCAAAAGCTTTGAAACCGAGTTTAAGAAGGGAGTTTGTTTTTCAGCAAACTCTCGGCGAGGAACTTTTTAGCTTCACCGCCAACACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTCCTTGACTTCTCTAACGGCGGTGATATTCTTCACCACGACGGAGATGAAGAAGAGAAAGATAGCAGTTTATCTCTTTCCTCTCAATCACTCTCAGAAGATAACAACTCAAATTCCACCGACGCTTCCTTTGATTCTTCCATTTTCTCAACCGAATTACTCGTTCCCGTGAGTTTTTCTCTCTTCGTTTCTTTTTCTCTCCGTTTTGTATTAGTAATTGAAATTGAAATTGGGGGTTCAATTTACAGGATGATGACGTGGCAGGTCTGGAATGGGTTTCACACTTTGTAGATGATTCTCTCCCAGAACTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACACGTGTCCTCAAAAACATGAAACTCGGCATGGAAAAACTTTACGTTTTTCAACTGAAAAAATGAAAATTACCACGAAGACCAGAACCGTGAAGAATAGAAAACCCAACCCTCGCGTTTGGGCTCAGCGCCCGTTTTTTCCGTCACCGTCTGTTGTTTTTGGGGGACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCTCTTGAGGCCCAAGAAGAGGGTCAGTTACAACGACGGTGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTGGGTGCTAAAACCCTTTGTAACGCGTGCGGGGTTCGTTATAAATCAGGTCGGCTTTTTTCGGAGTATAGACCGGCCTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGAAAGAGGAAAGGAATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACCACTTGCTGA
Protein sequence

>MS.gene68185.t1

MEFAVAKALKPSLRREFVFQQTLGEELFSFTANTVVAGEDFSVDDLLDFSNGGDILHHDGDEEEKDSSLSLSSQSLSEDNNSNSTDASFDSSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNTCPQKHETRHGKTLRFSTEKMKITTKTRTVKNRKPNPRVWAQRPFFPSPSVVFGGPPAKKQKKKPEALEAQEEGQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPAQTQMVTTC